Multiple sequence alignment - TraesCS6B01G374700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G374700 chr6B 100.000 8709 0 0 1 8709 648084773 648093481 0.000000e+00 16083.0
1 TraesCS6B01G374700 chr6B 96.293 1106 34 3 7004 8107 648126647 648127747 0.000000e+00 1808.0
2 TraesCS6B01G374700 chr6B 97.033 337 9 1 6613 6949 648126312 648126647 4.560000e-157 566.0
3 TraesCS6B01G374700 chr6B 94.937 237 10 1 8402 8638 648127741 648127975 3.840000e-98 370.0
4 TraesCS6B01G374700 chr6B 85.714 70 7 3 5683 5749 508947095 508947164 4.360000e-08 71.3
5 TraesCS6B01G374700 chr6A 96.967 5407 120 25 1 5380 575294606 575299995 0.000000e+00 9036.0
6 TraesCS6B01G374700 chr6A 95.797 2403 66 18 5720 8107 575299996 575302378 0.000000e+00 3845.0
7 TraesCS6B01G374700 chr6A 87.552 241 26 4 5459 5698 532024624 532024861 8.610000e-70 276.0
8 TraesCS6B01G374700 chr6A 87.421 159 13 4 5286 5440 263886860 263887015 8.990000e-40 176.0
9 TraesCS6B01G374700 chr6A 79.856 278 17 13 8382 8643 575302354 575302608 5.410000e-37 167.0
10 TraesCS6B01G374700 chr6D 96.815 4647 98 19 1 4622 429836791 429841412 0.000000e+00 7716.0
11 TraesCS6B01G374700 chr6D 97.160 2923 60 11 5189 8107 429841982 429844885 0.000000e+00 4916.0
12 TraesCS6B01G374700 chr6D 97.383 535 13 1 4678 5211 429841416 429841950 0.000000e+00 909.0
13 TraesCS6B01G374700 chr6D 83.333 264 18 7 8402 8645 429844879 429845136 4.090000e-53 220.0
14 TraesCS6B01G374700 chr6D 89.062 64 3 4 8642 8704 429845287 429845347 9.380000e-10 76.8
15 TraesCS6B01G374700 chr2B 98.616 289 4 0 8105 8393 439218781 439218493 6.030000e-141 512.0
16 TraesCS6B01G374700 chr2B 90.909 154 13 1 5288 5440 237348015 237348168 1.150000e-48 206.0
17 TraesCS6B01G374700 chr2B 100.000 29 0 0 5205 5233 794269185 794269213 4.000000e-03 54.7
18 TraesCS6B01G374700 chr3B 95.724 304 12 1 8104 8407 612802653 612802955 1.020000e-133 488.0
19 TraesCS6B01G374700 chr3B 82.051 312 49 5 5442 5749 686493634 686493942 8.670000e-65 259.0
20 TraesCS6B01G374700 chr4A 97.865 281 6 0 8107 8387 677117237 677116957 3.650000e-133 486.0
21 TraesCS6B01G374700 chr4A 94.366 284 15 1 8106 8388 38632311 38632594 1.340000e-117 435.0
22 TraesCS6B01G374700 chr2A 96.897 290 8 1 8105 8393 500526199 500525910 1.310000e-132 484.0
23 TraesCS6B01G374700 chr2A 96.786 280 8 1 8105 8384 147784568 147784846 4.760000e-127 466.0
24 TraesCS6B01G374700 chr2A 96.429 280 10 0 8105 8384 692413656 692413377 6.160000e-126 462.0
25 TraesCS6B01G374700 chr2A 85.113 309 36 8 5442 5745 669882567 669882870 3.050000e-79 307.0
26 TraesCS6B01G374700 chr2A 91.558 154 12 1 5288 5440 195313134 195313287 2.460000e-50 211.0
27 TraesCS6B01G374700 chr2A 92.857 42 2 1 5192 5233 763252027 763251987 9.440000e-05 60.2
28 TraesCS6B01G374700 chr5A 97.080 274 8 0 8107 8380 469115977 469115704 6.160000e-126 462.0
29 TraesCS6B01G374700 chr5A 93.243 148 9 1 5290 5436 396688833 396688686 5.290000e-52 217.0
30 TraesCS6B01G374700 chr7A 95.439 285 12 1 8105 8389 413650556 413650839 3.710000e-123 453.0
31 TraesCS6B01G374700 chr7A 88.050 318 32 4 5442 5754 563503578 563503262 1.070000e-98 372.0
32 TraesCS6B01G374700 chr7A 82.019 317 40 15 5442 5751 32763935 32764241 4.040000e-63 254.0
33 TraesCS6B01G374700 chr7D 88.679 318 30 4 5442 5754 497967554 497967238 4.930000e-102 383.0
34 TraesCS6B01G374700 chr7D 100.000 32 0 0 5248 5279 634865837 634865868 9.440000e-05 60.2
35 TraesCS6B01G374700 chr7D 100.000 29 0 0 5248 5276 634877666 634877694 4.000000e-03 54.7
36 TraesCS6B01G374700 chr7D 96.875 32 1 0 5248 5279 634990542 634990511 4.000000e-03 54.7
37 TraesCS6B01G374700 chr7D 96.875 32 1 0 5248 5279 635438177 635438146 4.000000e-03 54.7
38 TraesCS6B01G374700 chr4D 88.760 258 25 4 5442 5698 359635924 359636178 6.560000e-81 313.0
39 TraesCS6B01G374700 chr3D 82.109 313 47 7 5442 5749 520825711 520826019 8.670000e-65 259.0
40 TraesCS6B01G374700 chr3D 82.374 278 39 6 5439 5715 75351977 75352245 5.260000e-57 233.0
41 TraesCS6B01G374700 chr5B 89.634 164 13 3 5284 5445 208523459 208523298 1.150000e-48 206.0
42 TraesCS6B01G374700 chr2D 90.260 154 14 1 5288 5440 180881027 180881180 5.330000e-47 200.0
43 TraesCS6B01G374700 chr5D 88.415 164 15 3 5284 5445 204323392 204323231 2.480000e-45 195.0
44 TraesCS6B01G374700 chr5D 86.905 168 20 2 5283 5449 285256872 285256706 4.150000e-43 187.0
45 TraesCS6B01G374700 chr5D 86.364 154 19 2 5291 5443 82322187 82322035 5.410000e-37 167.0
46 TraesCS6B01G374700 chr1D 85.455 165 20 4 5286 5447 314013531 314013694 1.500000e-37 169.0
47 TraesCS6B01G374700 chr1B 84.756 164 22 3 5286 5447 424083758 424083920 2.520000e-35 161.0
48 TraesCS6B01G374700 chr3A 94.444 36 2 0 5250 5285 77660972 77660937 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G374700 chr6B 648084773 648093481 8708 False 16083.000000 16083 100.000000 1 8709 1 chr6B.!!$F2 8708
1 TraesCS6B01G374700 chr6B 648126312 648127975 1663 False 914.666667 1808 96.087667 6613 8638 3 chr6B.!!$F3 2025
2 TraesCS6B01G374700 chr6A 575294606 575302608 8002 False 4349.333333 9036 90.873333 1 8643 3 chr6A.!!$F3 8642
3 TraesCS6B01G374700 chr6D 429836791 429845347 8556 False 2767.560000 7716 92.750600 1 8704 5 chr6D.!!$F1 8703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
78 79 0.760945 CCCTCTGGCGGAGTAATCCT 60.761 60.000 21.38 0.0 40.30 3.24 F
396 401 1.251527 ATACTCCCGCGCCTCCTATG 61.252 60.000 0.00 0.0 0.00 2.23 F
665 671 2.103263 GTGTCGGCTTTATGGAGATCCT 59.897 50.000 0.00 0.0 36.82 3.24 F
832 838 2.949644 GCAACTTTATAGACCCGCCAAT 59.050 45.455 0.00 0.0 0.00 3.16 F
848 854 3.308401 GCCAATCCCCAGGTTTGAATAT 58.692 45.455 6.09 0.0 35.17 1.28 F
2830 2871 1.070601 GGCACCAGGTTTGCTCATTTT 59.929 47.619 2.21 0.0 40.07 1.82 F
3618 3659 0.596600 TTCGTGCTCTGACGTTGACC 60.597 55.000 0.00 0.0 40.34 4.02 F
4122 4163 1.302993 TTGGTTTAGGTGCTCCCGC 60.303 57.895 0.00 0.0 38.74 6.13 F
4224 4265 5.801531 AAGGTATTTGAAAGAAACCCACC 57.198 39.130 3.99 0.0 0.00 4.61 F
5032 5079 2.098607 TCGACTCACGTCAAGTCTGTTT 59.901 45.455 19.90 0.0 40.82 2.83 F
5638 5740 0.529773 TCATGCGTAGATTGGACGGC 60.530 55.000 0.00 0.0 40.66 5.68 F
6720 6825 0.392998 CAGATACACCCCCACACTGC 60.393 60.000 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1023 1029 4.092237 TGCGGTTCTATTTACGTGTGAATG 59.908 41.667 0.00 0.00 0.00 2.67 R
2331 2361 3.625764 TGCAACAGTCCACAAAGTACTTC 59.374 43.478 8.95 0.00 0.00 3.01 R
2663 2703 1.541147 AGCACTGCGCAATTGTGTTAT 59.459 42.857 23.89 11.67 46.13 1.89 R
2768 2809 5.447818 GCCTAGCAATGAGTGTGAACATAAC 60.448 44.000 0.00 0.00 0.00 1.89 R
3145 3186 7.391275 TCTCATGCACTGACAAAATGAGAAATA 59.609 33.333 10.40 0.00 46.24 1.40 R
4375 4416 0.391793 GGCAGCTTGGGAGACACTAC 60.392 60.000 0.00 0.00 0.00 2.73 R
4527 4573 2.106511 TGTTAAAGTTCAGAGGCCAGCT 59.893 45.455 5.01 0.00 0.00 4.24 R
4975 5022 4.097741 ACAACTTGTTACTGCATGCTGAAA 59.902 37.500 28.74 14.49 0.00 2.69 R
5198 5299 4.104383 ACATCTTACATTATGGGGCAGG 57.896 45.455 0.00 0.00 0.00 4.85 R
6638 6743 4.096984 GGATGAACCTGCAGTTATTTGGAG 59.903 45.833 13.81 0.00 39.40 3.86 R
7687 7809 0.820871 AAAACCAAAAGCTGTCGCCA 59.179 45.000 0.00 0.00 36.60 5.69 R
8273 8397 0.035056 GTGAGGGAGGGATGTGGTTG 60.035 60.000 0.00 0.00 0.00 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 5.948742 AGTTAGATTTCTTCTCCCTCTGG 57.051 43.478 0.00 0.00 35.79 3.86
78 79 0.760945 CCCTCTGGCGGAGTAATCCT 60.761 60.000 21.38 0.00 40.30 3.24
130 132 6.030228 GTCCATGATTCTCGAAATGGTTTTC 58.970 40.000 0.00 0.00 40.44 2.29
184 187 3.099002 GGAGGTCCCTCTACGTCTC 57.901 63.158 12.88 0.00 42.38 3.36
229 234 4.410883 TGTGGTTACTCAGGAGAGGAAAAA 59.589 41.667 2.79 0.00 46.07 1.94
368 373 1.470098 GCTGCCGATGAAGACATTGTT 59.530 47.619 0.00 0.00 36.82 2.83
396 401 1.251527 ATACTCCCGCGCCTCCTATG 61.252 60.000 0.00 0.00 0.00 2.23
665 671 2.103263 GTGTCGGCTTTATGGAGATCCT 59.897 50.000 0.00 0.00 36.82 3.24
832 838 2.949644 GCAACTTTATAGACCCGCCAAT 59.050 45.455 0.00 0.00 0.00 3.16
848 854 3.308401 GCCAATCCCCAGGTTTGAATAT 58.692 45.455 6.09 0.00 35.17 1.28
966 972 6.589830 ACTGTTATAGTTTGATTGCTAGCG 57.410 37.500 10.77 0.00 35.67 4.26
986 992 3.707793 CGGGTAGCAACTCTGTTAGATC 58.292 50.000 0.00 0.00 0.00 2.75
1023 1029 5.581126 TGGTGACAAGCATTTATGATTCC 57.419 39.130 0.00 0.00 33.58 3.01
1045 1051 4.493545 CCATTCACACGTAAATAGAACCGC 60.494 45.833 0.00 0.00 0.00 5.68
1174 1180 4.216257 AGTTGATCAATTTCCTGGTTCACG 59.784 41.667 12.12 0.00 0.00 4.35
1215 1221 8.637986 ACCAAAATTGAGCTGAGTATGTTTTTA 58.362 29.630 0.00 0.00 0.00 1.52
1318 1324 5.877012 GGAAACATCAGAGCTTGACATAGAA 59.123 40.000 0.00 0.00 38.99 2.10
1761 1786 7.034685 TGATGGAGCAGAATTATTGTTGATG 57.965 36.000 0.00 0.00 0.00 3.07
1762 1787 6.829811 TGATGGAGCAGAATTATTGTTGATGA 59.170 34.615 0.00 0.00 0.00 2.92
1763 1788 7.339976 TGATGGAGCAGAATTATTGTTGATGAA 59.660 33.333 0.00 0.00 0.00 2.57
1764 1789 7.465353 TGGAGCAGAATTATTGTTGATGAAA 57.535 32.000 0.00 0.00 0.00 2.69
2091 2117 7.845617 TTTTAAGAACCGAAACATGAATTCG 57.154 32.000 22.59 22.59 46.86 3.34
2431 2461 6.406370 TGCTATATAATGCCCACAGATGTAC 58.594 40.000 0.00 0.00 0.00 2.90
2569 2606 5.759763 CCCCCACTTTCTTTCTTCATTTTTG 59.240 40.000 0.00 0.00 0.00 2.44
2633 2673 9.607333 TCTATAATACCAATCTTGATCCAGTCT 57.393 33.333 0.00 0.00 0.00 3.24
2708 2748 9.750125 CTGGTCTTAGATTAATAAATTTTGCCC 57.250 33.333 0.00 0.00 0.00 5.36
2715 2755 8.379428 AGATTAATAAATTTTGCCCCTGAACT 57.621 30.769 0.00 0.00 0.00 3.01
2768 2809 2.620251 TGCAATATCTGGGAAGGACG 57.380 50.000 0.00 0.00 0.00 4.79
2824 2865 2.914097 GCTGGCACCAGGTTTGCT 60.914 61.111 18.14 0.00 43.77 3.91
2830 2871 1.070601 GGCACCAGGTTTGCTCATTTT 59.929 47.619 2.21 0.00 40.07 1.82
3221 3262 6.070596 AGCTTCATTTTGAAAATCTTAGGGGG 60.071 38.462 0.00 0.00 35.73 5.40
3309 3350 4.137116 AGCAACATCTTTGGATACGCTA 57.863 40.909 0.00 0.00 42.51 4.26
3618 3659 0.596600 TTCGTGCTCTGACGTTGACC 60.597 55.000 0.00 0.00 40.34 4.02
3737 3778 8.700051 CCCCAATATGGTTTGTTTGATACATAA 58.300 33.333 0.00 0.00 34.17 1.90
3840 3881 4.645136 TCTTTATAGGCACAGTCACGATCT 59.355 41.667 0.00 0.00 0.00 2.75
4122 4163 1.302993 TTGGTTTAGGTGCTCCCGC 60.303 57.895 0.00 0.00 38.74 6.13
4224 4265 5.801531 AAGGTATTTGAAAGAAACCCACC 57.198 39.130 3.99 0.00 0.00 4.61
4428 4471 8.258007 AGCAGTTACACATAATAGCAACTTCTA 58.742 33.333 0.00 0.00 0.00 2.10
4493 4539 9.126151 TGAACTGTAACCAAAAGTTGAATGATA 57.874 29.630 0.00 0.00 39.67 2.15
4527 4573 8.475639 GTCTTTCCTATGGTTTCTAGATGTGTA 58.524 37.037 0.00 0.00 0.00 2.90
4618 4664 7.661847 GGGGAATACCACAAGATACTAAGATTG 59.338 40.741 0.00 0.00 42.91 2.67
4793 4840 8.954950 TTTGATTTCATGTTTGGTTGTACAAT 57.045 26.923 12.26 0.00 0.00 2.71
4975 5022 7.660208 ACTTGTACGTTTTACTGAGAATCCATT 59.340 33.333 0.00 0.00 0.00 3.16
5032 5079 2.098607 TCGACTCACGTCAAGTCTGTTT 59.901 45.455 19.90 0.00 40.82 2.83
5198 5299 7.892241 TCCACCTTACACTATCATATACTACCC 59.108 40.741 0.00 0.00 0.00 3.69
5217 5318 2.379907 CCCCTGCCCCATAATGTAAGAT 59.620 50.000 0.00 0.00 0.00 2.40
5271 5372 1.340248 CTAGACGATACCCCGCACATT 59.660 52.381 0.00 0.00 0.00 2.71
5382 5484 8.746922 AGTGAACAAATACACTAAAATGCATG 57.253 30.769 0.00 0.00 44.06 4.06
5440 5542 7.719633 TGTCTTATATTTGTTTATGGAGGGAGC 59.280 37.037 0.00 0.00 0.00 4.70
5638 5740 0.529773 TCATGCGTAGATTGGACGGC 60.530 55.000 0.00 0.00 40.66 5.68
5703 5805 1.402968 GATGATGTGGAAGCACGCATT 59.597 47.619 4.08 0.00 41.31 3.56
6161 6266 7.982224 TGTGCACATTTTCAAATTTTCAATGA 58.018 26.923 17.42 0.00 0.00 2.57
6474 6579 4.058124 TGATGTCAGTACTGAGTTGCAAC 58.942 43.478 25.81 22.17 40.75 4.17
6518 6623 9.438291 GATTTGGTGTATGAAAATGAGATTACG 57.562 33.333 0.00 0.00 0.00 3.18
6638 6743 5.526111 TCACTAGAAGGTAAAACTGTGTTGC 59.474 40.000 0.00 0.00 0.00 4.17
6667 6772 8.902806 CAAATAACTGCAGGTTCATCCTTTATA 58.097 33.333 19.93 0.00 45.67 0.98
6720 6825 0.392998 CAGATACACCCCCACACTGC 60.393 60.000 0.00 0.00 0.00 4.40
6914 7019 6.527423 ACATCGACCCTTTAACTTGACTAAA 58.473 36.000 0.00 0.00 0.00 1.85
7274 7383 1.089920 CCGCTCATTGCTTTACTGCT 58.910 50.000 0.00 0.00 40.11 4.24
7275 7384 1.063174 CCGCTCATTGCTTTACTGCTC 59.937 52.381 0.00 0.00 40.11 4.26
7687 7809 0.319083 TCGTGCAGTGGGTTAACGAT 59.681 50.000 0.00 0.00 38.26 3.73
7755 7877 1.237285 CCTGGTTGCTTGGAAGACCG 61.237 60.000 0.00 0.00 39.42 4.79
8007 8129 9.756571 TTAGAGGAGAGTAGATAGAGTTTTTGT 57.243 33.333 0.00 0.00 0.00 2.83
8131 8255 9.930158 ATCTCTACTCCTATAAAAGACTCAGTT 57.070 33.333 0.00 0.00 0.00 3.16
8132 8256 9.179909 TCTCTACTCCTATAAAAGACTCAGTTG 57.820 37.037 0.00 0.00 0.00 3.16
8133 8257 9.179909 CTCTACTCCTATAAAAGACTCAGTTGA 57.820 37.037 0.00 0.00 0.00 3.18
8134 8258 9.702253 TCTACTCCTATAAAAGACTCAGTTGAT 57.298 33.333 0.00 0.00 0.00 2.57
8135 8259 9.743057 CTACTCCTATAAAAGACTCAGTTGATG 57.257 37.037 0.00 0.00 0.00 3.07
8136 8260 8.367660 ACTCCTATAAAAGACTCAGTTGATGA 57.632 34.615 0.00 0.00 36.21 2.92
8137 8261 8.986991 ACTCCTATAAAAGACTCAGTTGATGAT 58.013 33.333 0.00 0.00 37.28 2.45
8138 8262 9.258826 CTCCTATAAAAGACTCAGTTGATGATG 57.741 37.037 0.00 0.00 37.28 3.07
8139 8263 8.981659 TCCTATAAAAGACTCAGTTGATGATGA 58.018 33.333 0.00 0.00 37.28 2.92
8140 8264 9.775854 CCTATAAAAGACTCAGTTGATGATGAT 57.224 33.333 0.00 0.00 37.28 2.45
8142 8266 6.754702 AAAAGACTCAGTTGATGATGATGG 57.245 37.500 0.00 0.00 37.28 3.51
8143 8267 5.432680 AAGACTCAGTTGATGATGATGGT 57.567 39.130 0.00 0.00 37.28 3.55
8144 8268 4.767478 AGACTCAGTTGATGATGATGGTG 58.233 43.478 0.00 0.00 37.28 4.17
8145 8269 4.224594 AGACTCAGTTGATGATGATGGTGT 59.775 41.667 0.00 0.00 37.28 4.16
8146 8270 4.259356 ACTCAGTTGATGATGATGGTGTG 58.741 43.478 0.00 0.00 37.28 3.82
8147 8271 4.259356 CTCAGTTGATGATGATGGTGTGT 58.741 43.478 0.00 0.00 37.28 3.72
8148 8272 4.256110 TCAGTTGATGATGATGGTGTGTC 58.744 43.478 0.00 0.00 31.12 3.67
8149 8273 4.019950 TCAGTTGATGATGATGGTGTGTCT 60.020 41.667 0.00 0.00 31.12 3.41
8150 8274 4.094442 CAGTTGATGATGATGGTGTGTCTG 59.906 45.833 0.00 0.00 0.00 3.51
8151 8275 2.635714 TGATGATGATGGTGTGTCTGC 58.364 47.619 0.00 0.00 0.00 4.26
8152 8276 1.945394 GATGATGATGGTGTGTCTGCC 59.055 52.381 0.00 0.00 0.00 4.85
8153 8277 0.691904 TGATGATGGTGTGTCTGCCA 59.308 50.000 0.00 0.00 39.33 4.92
8157 8281 1.078214 ATGGTGTGTCTGCCATCCG 60.078 57.895 0.00 0.00 41.24 4.18
8158 8282 1.841302 ATGGTGTGTCTGCCATCCGT 61.841 55.000 0.00 0.00 41.24 4.69
8159 8283 1.741770 GGTGTGTCTGCCATCCGTC 60.742 63.158 0.00 0.00 0.00 4.79
8160 8284 1.005037 GTGTGTCTGCCATCCGTCA 60.005 57.895 0.00 0.00 0.00 4.35
8161 8285 0.391661 GTGTGTCTGCCATCCGTCAT 60.392 55.000 0.00 0.00 0.00 3.06
8162 8286 0.324614 TGTGTCTGCCATCCGTCATT 59.675 50.000 0.00 0.00 0.00 2.57
8163 8287 1.271325 TGTGTCTGCCATCCGTCATTT 60.271 47.619 0.00 0.00 0.00 2.32
8164 8288 1.398390 GTGTCTGCCATCCGTCATTTC 59.602 52.381 0.00 0.00 0.00 2.17
8165 8289 1.278985 TGTCTGCCATCCGTCATTTCT 59.721 47.619 0.00 0.00 0.00 2.52
8166 8290 2.499693 TGTCTGCCATCCGTCATTTCTA 59.500 45.455 0.00 0.00 0.00 2.10
8167 8291 3.055458 TGTCTGCCATCCGTCATTTCTAA 60.055 43.478 0.00 0.00 0.00 2.10
8168 8292 3.309954 GTCTGCCATCCGTCATTTCTAAC 59.690 47.826 0.00 0.00 0.00 2.34
8169 8293 2.614057 CTGCCATCCGTCATTTCTAACC 59.386 50.000 0.00 0.00 0.00 2.85
8170 8294 2.026729 TGCCATCCGTCATTTCTAACCA 60.027 45.455 0.00 0.00 0.00 3.67
8171 8295 3.214328 GCCATCCGTCATTTCTAACCAT 58.786 45.455 0.00 0.00 0.00 3.55
8172 8296 3.251004 GCCATCCGTCATTTCTAACCATC 59.749 47.826 0.00 0.00 0.00 3.51
8173 8297 4.450976 CCATCCGTCATTTCTAACCATCA 58.549 43.478 0.00 0.00 0.00 3.07
8174 8298 4.512944 CCATCCGTCATTTCTAACCATCAG 59.487 45.833 0.00 0.00 0.00 2.90
8175 8299 5.359756 CATCCGTCATTTCTAACCATCAGA 58.640 41.667 0.00 0.00 0.00 3.27
8176 8300 5.614324 TCCGTCATTTCTAACCATCAGAT 57.386 39.130 0.00 0.00 0.00 2.90
8177 8301 5.601662 TCCGTCATTTCTAACCATCAGATC 58.398 41.667 0.00 0.00 0.00 2.75
8178 8302 5.363868 TCCGTCATTTCTAACCATCAGATCT 59.636 40.000 0.00 0.00 0.00 2.75
8179 8303 5.464722 CCGTCATTTCTAACCATCAGATCTG 59.535 44.000 17.07 17.07 0.00 2.90
8180 8304 5.050499 CGTCATTTCTAACCATCAGATCTGC 60.050 44.000 18.36 0.00 0.00 4.26
8181 8305 5.819379 GTCATTTCTAACCATCAGATCTGCA 59.181 40.000 18.36 7.53 0.00 4.41
8182 8306 6.485984 GTCATTTCTAACCATCAGATCTGCAT 59.514 38.462 18.36 9.52 0.00 3.96
8183 8307 6.709397 TCATTTCTAACCATCAGATCTGCATC 59.291 38.462 18.36 0.00 0.00 3.91
8184 8308 5.883685 TTCTAACCATCAGATCTGCATCT 57.116 39.130 18.36 3.90 40.32 2.90
8185 8309 6.983906 TTCTAACCATCAGATCTGCATCTA 57.016 37.500 18.36 0.17 37.25 1.98
8186 8310 6.983906 TCTAACCATCAGATCTGCATCTAA 57.016 37.500 18.36 0.00 37.25 2.10
8187 8311 7.550597 TCTAACCATCAGATCTGCATCTAAT 57.449 36.000 18.36 2.09 37.25 1.73
8188 8312 7.384477 TCTAACCATCAGATCTGCATCTAATG 58.616 38.462 18.36 14.13 37.25 1.90
8189 8313 5.820404 ACCATCAGATCTGCATCTAATGA 57.180 39.130 18.36 0.00 37.03 2.57
8190 8314 6.375830 ACCATCAGATCTGCATCTAATGAT 57.624 37.500 18.36 0.00 37.03 2.45
8191 8315 6.780901 ACCATCAGATCTGCATCTAATGATT 58.219 36.000 18.36 3.56 37.03 2.57
8192 8316 6.655425 ACCATCAGATCTGCATCTAATGATTG 59.345 38.462 18.36 5.65 37.03 2.67
8193 8317 6.655425 CCATCAGATCTGCATCTAATGATTGT 59.345 38.462 18.36 0.00 37.03 2.71
8194 8318 7.361286 CCATCAGATCTGCATCTAATGATTGTG 60.361 40.741 18.36 0.00 37.03 3.33
8195 8319 6.823497 TCAGATCTGCATCTAATGATTGTGA 58.177 36.000 18.36 0.00 37.25 3.58
8196 8320 6.929606 TCAGATCTGCATCTAATGATTGTGAG 59.070 38.462 18.36 0.00 37.25 3.51
8197 8321 6.147985 CAGATCTGCATCTAATGATTGTGAGG 59.852 42.308 10.38 0.00 37.25 3.86
8198 8322 5.363562 TCTGCATCTAATGATTGTGAGGT 57.636 39.130 0.00 0.00 0.00 3.85
8199 8323 6.484364 TCTGCATCTAATGATTGTGAGGTA 57.516 37.500 0.00 0.00 0.00 3.08
8200 8324 6.888105 TCTGCATCTAATGATTGTGAGGTAA 58.112 36.000 0.00 0.00 0.00 2.85
8201 8325 6.988580 TCTGCATCTAATGATTGTGAGGTAAG 59.011 38.462 0.00 0.00 0.00 2.34
8202 8326 5.528690 TGCATCTAATGATTGTGAGGTAAGC 59.471 40.000 0.00 0.00 0.00 3.09
8203 8327 5.762218 GCATCTAATGATTGTGAGGTAAGCT 59.238 40.000 0.00 0.00 0.00 3.74
8204 8328 6.293298 GCATCTAATGATTGTGAGGTAAGCTG 60.293 42.308 0.00 0.00 0.00 4.24
8205 8329 6.299805 TCTAATGATTGTGAGGTAAGCTGT 57.700 37.500 0.00 0.00 0.00 4.40
8206 8330 6.108687 TCTAATGATTGTGAGGTAAGCTGTG 58.891 40.000 0.00 0.00 0.00 3.66
8207 8331 3.057969 TGATTGTGAGGTAAGCTGTGG 57.942 47.619 0.00 0.00 0.00 4.17
8208 8332 1.740025 GATTGTGAGGTAAGCTGTGGC 59.260 52.381 0.00 0.00 39.06 5.01
8209 8333 0.472044 TTGTGAGGTAAGCTGTGGCA 59.528 50.000 0.00 0.00 41.70 4.92
8210 8334 0.692476 TGTGAGGTAAGCTGTGGCAT 59.308 50.000 0.00 0.00 41.70 4.40
8211 8335 1.073763 TGTGAGGTAAGCTGTGGCATT 59.926 47.619 0.00 0.00 41.70 3.56
8212 8336 2.162681 GTGAGGTAAGCTGTGGCATTT 58.837 47.619 0.00 0.00 41.70 2.32
8213 8337 2.558359 GTGAGGTAAGCTGTGGCATTTT 59.442 45.455 0.00 0.00 41.70 1.82
8214 8338 3.005791 GTGAGGTAAGCTGTGGCATTTTT 59.994 43.478 0.00 0.00 41.70 1.94
8215 8339 3.005684 TGAGGTAAGCTGTGGCATTTTTG 59.994 43.478 0.00 0.00 41.70 2.44
8216 8340 2.068519 GGTAAGCTGTGGCATTTTTGC 58.931 47.619 0.00 0.00 41.70 3.68
8217 8341 2.547642 GGTAAGCTGTGGCATTTTTGCA 60.548 45.455 0.00 0.00 41.70 4.08
8218 8342 2.328819 AAGCTGTGGCATTTTTGCAA 57.671 40.000 0.00 0.00 41.70 4.08
8219 8343 1.585297 AGCTGTGGCATTTTTGCAAC 58.415 45.000 0.00 0.00 41.70 4.17
8220 8344 1.134461 AGCTGTGGCATTTTTGCAACA 60.134 42.857 0.00 7.85 45.54 3.33
8221 8345 1.669779 GCTGTGGCATTTTTGCAACAA 59.330 42.857 9.29 0.00 46.76 2.83
8222 8346 2.286536 GCTGTGGCATTTTTGCAACAAG 60.287 45.455 9.29 5.45 46.76 3.16
8223 8347 2.286872 TGTGGCATTTTTGCAACAAGG 58.713 42.857 5.72 5.65 44.85 3.61
8224 8348 1.002576 GTGGCATTTTTGCAACAAGGC 60.003 47.619 22.90 22.90 38.55 4.35
8225 8349 0.592637 GGCATTTTTGCAACAAGGCC 59.407 50.000 30.98 30.98 42.20 5.19
8226 8350 0.592637 GCATTTTTGCAACAAGGCCC 59.407 50.000 21.01 0.00 34.41 5.80
8227 8351 1.237533 CATTTTTGCAACAAGGCCCC 58.762 50.000 0.00 0.00 0.00 5.80
8228 8352 0.842635 ATTTTTGCAACAAGGCCCCA 59.157 45.000 0.00 0.00 0.00 4.96
8229 8353 0.107459 TTTTTGCAACAAGGCCCCAC 60.107 50.000 0.00 0.00 0.00 4.61
8230 8354 0.980231 TTTTGCAACAAGGCCCCACT 60.980 50.000 0.00 0.00 0.00 4.00
8231 8355 0.980231 TTTGCAACAAGGCCCCACTT 60.980 50.000 0.00 0.00 0.00 3.16
8232 8356 1.398958 TTGCAACAAGGCCCCACTTC 61.399 55.000 0.00 0.00 0.00 3.01
8233 8357 1.531602 GCAACAAGGCCCCACTTCT 60.532 57.895 0.00 0.00 0.00 2.85
8234 8358 1.527433 GCAACAAGGCCCCACTTCTC 61.527 60.000 0.00 0.00 0.00 2.87
8235 8359 0.111253 CAACAAGGCCCCACTTCTCT 59.889 55.000 0.00 0.00 0.00 3.10
8236 8360 0.111253 AACAAGGCCCCACTTCTCTG 59.889 55.000 0.00 0.00 0.00 3.35
8237 8361 1.676967 CAAGGCCCCACTTCTCTGC 60.677 63.158 0.00 0.00 0.00 4.26
8238 8362 1.849823 AAGGCCCCACTTCTCTGCT 60.850 57.895 0.00 0.00 0.00 4.24
8239 8363 1.846712 AAGGCCCCACTTCTCTGCTC 61.847 60.000 0.00 0.00 0.00 4.26
8240 8364 2.270527 GCCCCACTTCTCTGCTCC 59.729 66.667 0.00 0.00 0.00 4.70
8241 8365 2.596851 GCCCCACTTCTCTGCTCCA 61.597 63.158 0.00 0.00 0.00 3.86
8242 8366 2.069776 CCCCACTTCTCTGCTCCAA 58.930 57.895 0.00 0.00 0.00 3.53
8243 8367 0.622665 CCCCACTTCTCTGCTCCAAT 59.377 55.000 0.00 0.00 0.00 3.16
8244 8368 1.005215 CCCCACTTCTCTGCTCCAATT 59.995 52.381 0.00 0.00 0.00 2.32
8245 8369 2.556114 CCCCACTTCTCTGCTCCAATTT 60.556 50.000 0.00 0.00 0.00 1.82
8246 8370 2.490903 CCCACTTCTCTGCTCCAATTTG 59.509 50.000 0.00 0.00 0.00 2.32
8247 8371 2.094854 CCACTTCTCTGCTCCAATTTGC 60.095 50.000 0.00 0.00 0.00 3.68
8248 8372 2.555325 CACTTCTCTGCTCCAATTTGCA 59.445 45.455 0.00 0.00 37.63 4.08
8255 8379 3.110447 TGCTCCAATTTGCAGAAAACC 57.890 42.857 0.00 0.00 34.84 3.27
8256 8380 2.224257 TGCTCCAATTTGCAGAAAACCC 60.224 45.455 0.00 0.00 34.84 4.11
8257 8381 2.871637 GCTCCAATTTGCAGAAAACCCC 60.872 50.000 0.00 0.00 0.00 4.95
8258 8382 2.634453 CTCCAATTTGCAGAAAACCCCT 59.366 45.455 0.00 0.00 0.00 4.79
8259 8383 3.044894 TCCAATTTGCAGAAAACCCCTT 58.955 40.909 0.00 0.00 0.00 3.95
8260 8384 4.227197 TCCAATTTGCAGAAAACCCCTTA 58.773 39.130 0.00 0.00 0.00 2.69
8261 8385 4.039852 TCCAATTTGCAGAAAACCCCTTAC 59.960 41.667 0.00 0.00 0.00 2.34
8262 8386 4.040339 CCAATTTGCAGAAAACCCCTTACT 59.960 41.667 0.00 0.00 0.00 2.24
8263 8387 5.245075 CCAATTTGCAGAAAACCCCTTACTA 59.755 40.000 0.00 0.00 0.00 1.82
8264 8388 6.070824 CCAATTTGCAGAAAACCCCTTACTAT 60.071 38.462 0.00 0.00 0.00 2.12
8265 8389 6.775594 ATTTGCAGAAAACCCCTTACTATC 57.224 37.500 0.00 0.00 0.00 2.08
8266 8390 5.514500 TTGCAGAAAACCCCTTACTATCT 57.486 39.130 0.00 0.00 0.00 1.98
8267 8391 5.514500 TGCAGAAAACCCCTTACTATCTT 57.486 39.130 0.00 0.00 0.00 2.40
8268 8392 5.253330 TGCAGAAAACCCCTTACTATCTTG 58.747 41.667 0.00 0.00 0.00 3.02
8269 8393 5.013704 TGCAGAAAACCCCTTACTATCTTGA 59.986 40.000 0.00 0.00 0.00 3.02
8270 8394 5.944007 GCAGAAAACCCCTTACTATCTTGAA 59.056 40.000 0.00 0.00 0.00 2.69
8271 8395 6.433093 GCAGAAAACCCCTTACTATCTTGAAA 59.567 38.462 0.00 0.00 0.00 2.69
8272 8396 7.575155 GCAGAAAACCCCTTACTATCTTGAAAC 60.575 40.741 0.00 0.00 0.00 2.78
8273 8397 6.946583 AGAAAACCCCTTACTATCTTGAAACC 59.053 38.462 0.00 0.00 0.00 3.27
8274 8398 5.853572 AACCCCTTACTATCTTGAAACCA 57.146 39.130 0.00 0.00 0.00 3.67
8275 8399 5.853572 ACCCCTTACTATCTTGAAACCAA 57.146 39.130 0.00 0.00 0.00 3.67
8276 8400 5.567430 ACCCCTTACTATCTTGAAACCAAC 58.433 41.667 0.00 0.00 0.00 3.77
8277 8401 4.948004 CCCCTTACTATCTTGAAACCAACC 59.052 45.833 0.00 0.00 0.00 3.77
8278 8402 5.515886 CCCCTTACTATCTTGAAACCAACCA 60.516 44.000 0.00 0.00 0.00 3.67
8279 8403 5.414765 CCCTTACTATCTTGAAACCAACCAC 59.585 44.000 0.00 0.00 0.00 4.16
8280 8404 6.001460 CCTTACTATCTTGAAACCAACCACA 58.999 40.000 0.00 0.00 0.00 4.17
8281 8405 6.659242 CCTTACTATCTTGAAACCAACCACAT 59.341 38.462 0.00 0.00 0.00 3.21
8282 8406 7.148239 CCTTACTATCTTGAAACCAACCACATC 60.148 40.741 0.00 0.00 0.00 3.06
8283 8407 5.010282 ACTATCTTGAAACCAACCACATCC 58.990 41.667 0.00 0.00 0.00 3.51
8284 8408 2.593026 TCTTGAAACCAACCACATCCC 58.407 47.619 0.00 0.00 0.00 3.85
8285 8409 2.176798 TCTTGAAACCAACCACATCCCT 59.823 45.455 0.00 0.00 0.00 4.20
8286 8410 2.286365 TGAAACCAACCACATCCCTC 57.714 50.000 0.00 0.00 0.00 4.30
8287 8411 1.203001 TGAAACCAACCACATCCCTCC 60.203 52.381 0.00 0.00 0.00 4.30
8288 8412 0.114364 AAACCAACCACATCCCTCCC 59.886 55.000 0.00 0.00 0.00 4.30
8289 8413 0.776080 AACCAACCACATCCCTCCCT 60.776 55.000 0.00 0.00 0.00 4.20
8290 8414 1.208165 ACCAACCACATCCCTCCCTC 61.208 60.000 0.00 0.00 0.00 4.30
8291 8415 1.207488 CCAACCACATCCCTCCCTCA 61.207 60.000 0.00 0.00 0.00 3.86
8292 8416 0.035056 CAACCACATCCCTCCCTCAC 60.035 60.000 0.00 0.00 0.00 3.51
8293 8417 1.208165 AACCACATCCCTCCCTCACC 61.208 60.000 0.00 0.00 0.00 4.02
8294 8418 1.307343 CCACATCCCTCCCTCACCT 60.307 63.158 0.00 0.00 0.00 4.00
8295 8419 1.341156 CCACATCCCTCCCTCACCTC 61.341 65.000 0.00 0.00 0.00 3.85
8296 8420 0.618680 CACATCCCTCCCTCACCTCA 60.619 60.000 0.00 0.00 0.00 3.86
8297 8421 0.344790 ACATCCCTCCCTCACCTCAT 59.655 55.000 0.00 0.00 0.00 2.90
8298 8422 1.274650 ACATCCCTCCCTCACCTCATT 60.275 52.381 0.00 0.00 0.00 2.57
8299 8423 1.419387 CATCCCTCCCTCACCTCATTC 59.581 57.143 0.00 0.00 0.00 2.67
8300 8424 0.326618 TCCCTCCCTCACCTCATTCC 60.327 60.000 0.00 0.00 0.00 3.01
8301 8425 0.327000 CCCTCCCTCACCTCATTCCT 60.327 60.000 0.00 0.00 0.00 3.36
8302 8426 1.589414 CCTCCCTCACCTCATTCCTT 58.411 55.000 0.00 0.00 0.00 3.36
8303 8427 2.629639 CCCTCCCTCACCTCATTCCTTA 60.630 54.545 0.00 0.00 0.00 2.69
8304 8428 2.436173 CCTCCCTCACCTCATTCCTTAC 59.564 54.545 0.00 0.00 0.00 2.34
8305 8429 3.379452 CTCCCTCACCTCATTCCTTACT 58.621 50.000 0.00 0.00 0.00 2.24
8306 8430 4.547671 CTCCCTCACCTCATTCCTTACTA 58.452 47.826 0.00 0.00 0.00 1.82
8307 8431 4.547671 TCCCTCACCTCATTCCTTACTAG 58.452 47.826 0.00 0.00 0.00 2.57
8308 8432 4.232122 TCCCTCACCTCATTCCTTACTAGA 59.768 45.833 0.00 0.00 0.00 2.43
8309 8433 4.586841 CCCTCACCTCATTCCTTACTAGAG 59.413 50.000 0.00 0.00 0.00 2.43
8310 8434 5.205056 CCTCACCTCATTCCTTACTAGAGT 58.795 45.833 0.00 0.00 0.00 3.24
8311 8435 5.068460 CCTCACCTCATTCCTTACTAGAGTG 59.932 48.000 0.00 0.00 0.00 3.51
8312 8436 5.580998 TCACCTCATTCCTTACTAGAGTGT 58.419 41.667 0.00 0.00 0.00 3.55
8313 8437 6.017192 TCACCTCATTCCTTACTAGAGTGTT 58.983 40.000 0.00 0.00 0.00 3.32
8314 8438 6.497259 TCACCTCATTCCTTACTAGAGTGTTT 59.503 38.462 0.00 0.00 0.00 2.83
8315 8439 7.016268 TCACCTCATTCCTTACTAGAGTGTTTT 59.984 37.037 0.00 0.00 0.00 2.43
8316 8440 7.661847 CACCTCATTCCTTACTAGAGTGTTTTT 59.338 37.037 0.00 0.00 0.00 1.94
8317 8441 7.878644 ACCTCATTCCTTACTAGAGTGTTTTTC 59.121 37.037 0.00 0.00 0.00 2.29
8318 8442 8.097662 CCTCATTCCTTACTAGAGTGTTTTTCT 58.902 37.037 0.00 0.00 0.00 2.52
8319 8443 9.495572 CTCATTCCTTACTAGAGTGTTTTTCTT 57.504 33.333 0.00 0.00 0.00 2.52
8320 8444 9.847224 TCATTCCTTACTAGAGTGTTTTTCTTT 57.153 29.630 0.00 0.00 0.00 2.52
8322 8446 9.847224 ATTCCTTACTAGAGTGTTTTTCTTTCA 57.153 29.630 0.00 0.00 0.00 2.69
8323 8447 9.675464 TTCCTTACTAGAGTGTTTTTCTTTCAA 57.325 29.630 0.00 0.00 0.00 2.69
8324 8448 9.326413 TCCTTACTAGAGTGTTTTTCTTTCAAG 57.674 33.333 0.00 0.00 0.00 3.02
8325 8449 9.110502 CCTTACTAGAGTGTTTTTCTTTCAAGT 57.889 33.333 0.00 0.00 0.00 3.16
8329 8453 8.793592 ACTAGAGTGTTTTTCTTTCAAGTTTGT 58.206 29.630 0.00 0.00 0.00 2.83
8330 8454 7.873739 AGAGTGTTTTTCTTTCAAGTTTGTG 57.126 32.000 0.00 0.00 0.00 3.33
8331 8455 7.657336 AGAGTGTTTTTCTTTCAAGTTTGTGA 58.343 30.769 0.00 0.00 0.00 3.58
8332 8456 8.141268 AGAGTGTTTTTCTTTCAAGTTTGTGAA 58.859 29.630 0.00 0.00 35.72 3.18
8333 8457 8.072238 AGTGTTTTTCTTTCAAGTTTGTGAAC 57.928 30.769 0.00 0.00 37.24 3.18
8334 8458 7.708752 AGTGTTTTTCTTTCAAGTTTGTGAACA 59.291 29.630 0.00 0.00 37.24 3.18
8335 8459 8.495148 GTGTTTTTCTTTCAAGTTTGTGAACAT 58.505 29.630 0.00 0.00 37.24 2.71
8336 8460 8.494347 TGTTTTTCTTTCAAGTTTGTGAACATG 58.506 29.630 0.00 0.00 37.24 3.21
8337 8461 8.495148 GTTTTTCTTTCAAGTTTGTGAACATGT 58.505 29.630 0.00 0.00 37.24 3.21
8338 8462 9.698309 TTTTTCTTTCAAGTTTGTGAACATGTA 57.302 25.926 0.00 0.00 37.24 2.29
8339 8463 9.868277 TTTTCTTTCAAGTTTGTGAACATGTAT 57.132 25.926 0.00 0.00 37.24 2.29
8340 8464 9.868277 TTTCTTTCAAGTTTGTGAACATGTATT 57.132 25.926 0.00 0.00 37.24 1.89
8353 8477 9.952030 TGTGAACATGTATTATTCTACTTTGGA 57.048 29.630 0.00 0.00 0.00 3.53
8357 8481 8.833231 ACATGTATTATTCTACTTTGGATCCG 57.167 34.615 7.39 0.00 0.00 4.18
8358 8482 8.429641 ACATGTATTATTCTACTTTGGATCCGT 58.570 33.333 7.39 1.29 0.00 4.69
8359 8483 9.273016 CATGTATTATTCTACTTTGGATCCGTT 57.727 33.333 7.39 0.00 0.00 4.44
8360 8484 8.657074 TGTATTATTCTACTTTGGATCCGTTG 57.343 34.615 7.39 1.61 0.00 4.10
8361 8485 6.619801 ATTATTCTACTTTGGATCCGTTGC 57.380 37.500 7.39 0.00 0.00 4.17
8362 8486 3.410631 TTCTACTTTGGATCCGTTGCA 57.589 42.857 7.39 0.00 0.00 4.08
8363 8487 3.410631 TCTACTTTGGATCCGTTGCAA 57.589 42.857 7.39 0.00 33.34 4.08
8364 8488 3.071479 TCTACTTTGGATCCGTTGCAAC 58.929 45.455 19.89 19.89 35.14 4.17
8373 8497 4.249020 CGTTGCAACGCACAGGCA 62.249 61.111 35.89 0.00 46.06 4.75
8374 8498 2.655044 GTTGCAACGCACAGGCAC 60.655 61.111 14.90 0.00 38.71 5.01
8375 8499 3.136791 TTGCAACGCACAGGCACA 61.137 55.556 0.00 0.00 38.71 4.57
8376 8500 2.488403 TTGCAACGCACAGGCACAT 61.488 52.632 0.00 0.00 38.71 3.21
8377 8501 2.014064 TTGCAACGCACAGGCACATT 62.014 50.000 0.00 0.00 38.71 2.71
8378 8502 2.017783 GCAACGCACAGGCACATTG 61.018 57.895 0.00 0.00 41.24 2.82
8379 8503 2.017783 CAACGCACAGGCACATTGC 61.018 57.895 0.00 0.00 44.08 3.56
8380 8504 2.195567 AACGCACAGGCACATTGCT 61.196 52.632 0.00 0.00 44.28 3.91
8381 8505 0.888736 AACGCACAGGCACATTGCTA 60.889 50.000 0.00 0.00 44.28 3.49
8382 8506 1.300971 ACGCACAGGCACATTGCTAG 61.301 55.000 0.00 0.00 44.28 3.42
8383 8507 1.300971 CGCACAGGCACATTGCTAGT 61.301 55.000 0.00 0.00 44.28 2.57
8384 8508 1.737838 GCACAGGCACATTGCTAGTA 58.262 50.000 0.00 0.00 44.28 1.82
8385 8509 2.292267 GCACAGGCACATTGCTAGTAT 58.708 47.619 0.00 0.00 44.28 2.12
8386 8510 3.466836 GCACAGGCACATTGCTAGTATA 58.533 45.455 0.00 0.00 44.28 1.47
8387 8511 4.067896 GCACAGGCACATTGCTAGTATAT 58.932 43.478 0.00 0.00 44.28 0.86
8388 8512 5.237815 GCACAGGCACATTGCTAGTATATA 58.762 41.667 0.00 0.00 44.28 0.86
8389 8513 5.877012 GCACAGGCACATTGCTAGTATATAT 59.123 40.000 0.00 0.00 44.28 0.86
8390 8514 7.041721 GCACAGGCACATTGCTAGTATATATA 58.958 38.462 0.00 0.00 44.28 0.86
8391 8515 7.712639 GCACAGGCACATTGCTAGTATATATAT 59.287 37.037 0.00 0.00 44.28 0.86
8530 8655 5.297776 CGATGCAAGGAATGAAGGAATACTT 59.702 40.000 0.00 0.00 43.65 2.24
8561 8686 1.745653 GCATCTAAGCCCTGTTTGGTC 59.254 52.381 0.00 0.00 0.00 4.02
8570 8695 1.950909 CCCTGTTTGGTCGCAAACTAA 59.049 47.619 16.28 0.00 43.36 2.24
8645 8790 6.426646 AAGTCTTCCTCATGTGAACTACTT 57.573 37.500 0.00 6.99 0.00 2.24
8647 8792 5.777732 AGTCTTCCTCATGTGAACTACTTCT 59.222 40.000 0.00 0.00 0.00 2.85
8680 8978 1.933247 ACTCGCAATAGCTTCTCTGC 58.067 50.000 0.00 0.00 39.10 4.26
8681 8979 1.205655 ACTCGCAATAGCTTCTCTGCA 59.794 47.619 0.00 0.00 39.10 4.41
8682 8980 2.158986 ACTCGCAATAGCTTCTCTGCAT 60.159 45.455 0.00 0.00 39.10 3.96
8683 8981 2.871022 CTCGCAATAGCTTCTCTGCATT 59.129 45.455 0.00 0.00 39.10 3.56
8685 8983 2.871022 CGCAATAGCTTCTCTGCATTCT 59.129 45.455 0.00 0.00 39.10 2.40
8686 8984 3.303197 CGCAATAGCTTCTCTGCATTCTG 60.303 47.826 0.00 0.00 39.10 3.02
8705 9003 1.767289 GAGTTCTGACTCGCGAAACA 58.233 50.000 19.46 16.19 42.60 2.83
8706 9004 1.452399 GAGTTCTGACTCGCGAAACAC 59.548 52.381 19.46 11.57 42.60 3.32
8707 9005 1.202371 AGTTCTGACTCGCGAAACACA 60.202 47.619 19.46 11.99 0.00 3.72
8708 9006 1.071436 GTTCTGACTCGCGAAACACAC 60.071 52.381 11.33 7.07 0.00 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 9.771140 AGAGGGAGAAGAAATCTAACTAAACTA 57.229 33.333 0.00 0.00 38.96 2.24
78 79 1.073763 ACACAAGGAACTAGCATGCCA 59.926 47.619 15.66 0.00 38.49 4.92
130 132 6.541969 TCACACACATTACAAATATCTTGCG 58.458 36.000 0.00 0.00 0.00 4.85
184 187 7.417797 CCACAAATAGAAACCCATAATCCCTTG 60.418 40.741 0.00 0.00 0.00 3.61
368 373 1.162181 CGCGGGAGTATAGGACGTGA 61.162 60.000 0.00 0.00 37.24 4.35
491 496 5.965747 TGAATGTGTTTCGAAGGACGTAGTT 60.966 40.000 0.00 0.00 37.93 2.24
492 497 4.500205 TGAATGTGTTTCGAAGGACGTAGT 60.500 41.667 0.00 0.00 39.98 2.73
665 671 3.398406 TCAAAATCAGCGCACTAGAACA 58.602 40.909 11.47 0.00 0.00 3.18
832 838 4.396357 ACAACATATTCAAACCTGGGGA 57.604 40.909 0.00 0.00 0.00 4.81
966 972 3.707793 CGATCTAACAGAGTTGCTACCC 58.292 50.000 0.00 0.00 0.00 3.69
986 992 0.458889 CACCATTTTGGATGCTGGCG 60.459 55.000 0.00 0.00 40.96 5.69
1023 1029 4.092237 TGCGGTTCTATTTACGTGTGAATG 59.908 41.667 0.00 0.00 0.00 2.67
1139 1145 6.910536 AATTGATCAACTTCTCATACGTCC 57.089 37.500 11.07 0.00 0.00 4.79
1174 1180 8.606040 TCAATTTTGGTTGGAAGAATGAAATC 57.394 30.769 0.00 0.00 0.00 2.17
1215 1221 9.933723 AAATATAAAATCTCTGCAAAGCAAAGT 57.066 25.926 0.00 0.00 38.41 2.66
1318 1324 8.407064 GCTTGTGTATATACAGTAGAACACTCT 58.593 37.037 15.93 0.00 38.38 3.24
2070 2096 6.788684 TTCGAATTCATGTTTCGGTTCTTA 57.211 33.333 23.43 8.85 44.55 2.10
2331 2361 3.625764 TGCAACAGTCCACAAAGTACTTC 59.374 43.478 8.95 0.00 0.00 3.01
2569 2606 7.568199 ACTATGTGATTATGTTAAACAGGGC 57.432 36.000 0.00 0.00 0.00 5.19
2663 2703 1.541147 AGCACTGCGCAATTGTGTTAT 59.459 42.857 23.89 11.67 46.13 1.89
2708 2748 7.388500 ACATGGCATAAAAATTGAAAGTTCAGG 59.612 33.333 0.00 0.00 38.61 3.86
2768 2809 5.447818 GCCTAGCAATGAGTGTGAACATAAC 60.448 44.000 0.00 0.00 0.00 1.89
3145 3186 7.391275 TCTCATGCACTGACAAAATGAGAAATA 59.609 33.333 10.40 0.00 46.24 1.40
3206 3247 5.222130 GCCATATCTCCCCCTAAGATTTTCA 60.222 44.000 0.00 0.00 35.20 2.69
3269 3310 5.282055 TGCTACTCCAGAATAAGATGGTG 57.718 43.478 0.00 0.00 37.84 4.17
3309 3350 6.946009 ACAGGGTAAATTAGCACTTATGTGTT 59.054 34.615 10.17 6.94 45.44 3.32
3618 3659 5.177511 TGCAACTTGACAATAGAAGAACTCG 59.822 40.000 0.00 0.00 0.00 4.18
3737 3778 8.345724 ACAGAAGAGCACAATAGAAATCAAAT 57.654 30.769 0.00 0.00 0.00 2.32
3840 3881 9.755804 TGTTGCTGTTTTCATCACAAAAATATA 57.244 25.926 0.00 0.00 0.00 0.86
4244 4285 2.631268 CCCCCTCCCTACCATTACAAGA 60.631 54.545 0.00 0.00 0.00 3.02
4375 4416 0.391793 GGCAGCTTGGGAGACACTAC 60.392 60.000 0.00 0.00 0.00 2.73
4409 4452 7.661536 TCTCCTAGAAGTTGCTATTATGTGT 57.338 36.000 0.00 0.00 0.00 3.72
4503 4549 7.439655 GCTACACATCTAGAAACCATAGGAAAG 59.560 40.741 0.00 0.00 0.00 2.62
4509 4555 5.453339 GCCAGCTACACATCTAGAAACCATA 60.453 44.000 0.00 0.00 0.00 2.74
4527 4573 2.106511 TGTTAAAGTTCAGAGGCCAGCT 59.893 45.455 5.01 0.00 0.00 4.24
4593 4639 8.211629 ACAATCTTAGTATCTTGTGGTATTCCC 58.788 37.037 0.00 0.00 31.00 3.97
4793 4840 7.665559 ACCACATCAAAGAAAATTAGAGCAGTA 59.334 33.333 0.00 0.00 0.00 2.74
4975 5022 4.097741 ACAACTTGTTACTGCATGCTGAAA 59.902 37.500 28.74 14.49 0.00 2.69
5198 5299 4.104383 ACATCTTACATTATGGGGCAGG 57.896 45.455 0.00 0.00 0.00 4.85
5217 5318 6.094881 CCCTCTGTCTTTGAACTACAAAAACA 59.905 38.462 0.00 0.00 44.03 2.83
5237 5338 7.167535 GGTATCGTCTAGTTATTACTCCCTCT 58.832 42.308 0.00 0.00 35.78 3.69
5271 5372 7.015877 GGGGAGTATATATACAGTTCCACAACA 59.984 40.741 22.00 0.00 32.03 3.33
5346 5448 7.498900 AGTGTATTTGTTCACTCATTTCAGTCA 59.501 33.333 0.00 0.00 40.28 3.41
5382 5484 9.915629 ACTCTTTTCTGATTCGGATGTATATAC 57.084 33.333 5.89 5.89 0.00 1.47
5431 5533 5.975988 ATATTTAGAAACTGCTCCCTCCA 57.024 39.130 0.00 0.00 0.00 3.86
5432 5534 6.038714 CACAATATTTAGAAACTGCTCCCTCC 59.961 42.308 0.00 0.00 0.00 4.30
5520 5622 9.462174 TGCACAACTTTTCATGTTAAGATTTAG 57.538 29.630 13.83 0.00 0.00 1.85
5606 5708 5.073428 TCTACGCATGAGAATCTCTACCAT 58.927 41.667 11.92 0.00 34.92 3.55
5638 5740 5.521906 TTACTAGCTTGATCCACTAGCAG 57.478 43.478 1.04 8.05 46.56 4.24
5703 5805 8.429641 GTGATCCCCACTAGTAATTATCTCAAA 58.570 37.037 0.00 0.00 42.44 2.69
5762 5864 6.587206 TCTTTGGATTGCATACATGTGAAA 57.413 33.333 9.11 0.00 0.00 2.69
6161 6266 6.006449 ACAGAATCTTAGTGTTCCTTTGCAT 58.994 36.000 0.00 0.00 0.00 3.96
6474 6579 6.161381 CCAAATCAGACTCCATTTTTGAAGG 58.839 40.000 0.00 0.00 0.00 3.46
6518 6623 6.744112 TGACATTTTACTTTCAATGGGTGAC 58.256 36.000 0.00 0.00 35.39 3.67
6638 6743 4.096984 GGATGAACCTGCAGTTATTTGGAG 59.903 45.833 13.81 0.00 39.40 3.86
6667 6772 8.547967 TTTAGAGACGAATAAAGCTGTCAAAT 57.452 30.769 2.85 0.00 33.83 2.32
7193 7300 4.622701 ATTTCTAATTGGCTTCGCTGTC 57.377 40.909 0.00 0.00 0.00 3.51
7359 7468 1.347707 TCGGTTGAAAGGTGAGCATCT 59.652 47.619 0.00 0.00 34.92 2.90
7407 7516 6.018433 AGGGAATTTATGCTCACCATAGTT 57.982 37.500 0.00 0.00 37.68 2.24
7597 7719 7.557719 TCCTGAAAAGATTTGGATAAGGTGATC 59.442 37.037 0.00 0.00 0.00 2.92
7687 7809 0.820871 AAAACCAAAAGCTGTCGCCA 59.179 45.000 0.00 0.00 36.60 5.69
7755 7877 4.377841 CGACTGTTTGGAAAAGAGATGCTC 60.378 45.833 4.12 0.00 0.00 4.26
7851 7973 1.156736 CGAAATCCGGGATGGTATGC 58.843 55.000 10.96 0.00 39.52 3.14
7925 8047 2.567615 GCTTCACTAAAGGAGTCTGGGA 59.432 50.000 0.00 0.00 35.64 4.37
8105 8229 9.930158 AACTGAGTCTTTTATAGGAGTAGAGAT 57.070 33.333 0.00 0.00 0.00 2.75
8106 8230 9.179909 CAACTGAGTCTTTTATAGGAGTAGAGA 57.820 37.037 0.00 0.00 0.00 3.10
8107 8231 9.179909 TCAACTGAGTCTTTTATAGGAGTAGAG 57.820 37.037 0.00 0.00 0.00 2.43
8108 8232 9.702253 ATCAACTGAGTCTTTTATAGGAGTAGA 57.298 33.333 0.00 0.00 0.00 2.59
8109 8233 9.743057 CATCAACTGAGTCTTTTATAGGAGTAG 57.257 37.037 0.00 0.00 0.00 2.57
8110 8234 9.475620 TCATCAACTGAGTCTTTTATAGGAGTA 57.524 33.333 0.00 0.00 0.00 2.59
8111 8235 8.367660 TCATCAACTGAGTCTTTTATAGGAGT 57.632 34.615 0.00 0.00 0.00 3.85
8112 8236 9.258826 CATCATCAACTGAGTCTTTTATAGGAG 57.741 37.037 0.00 0.00 37.28 3.69
8113 8237 8.981659 TCATCATCAACTGAGTCTTTTATAGGA 58.018 33.333 0.00 0.00 37.28 2.94
8114 8238 9.775854 ATCATCATCAACTGAGTCTTTTATAGG 57.224 33.333 0.00 0.00 37.28 2.57
8116 8240 9.551734 CCATCATCATCAACTGAGTCTTTTATA 57.448 33.333 0.00 0.00 37.28 0.98
8117 8241 8.051535 ACCATCATCATCAACTGAGTCTTTTAT 58.948 33.333 0.00 0.00 37.28 1.40
8118 8242 7.335171 CACCATCATCATCAACTGAGTCTTTTA 59.665 37.037 0.00 0.00 37.28 1.52
8119 8243 6.150641 CACCATCATCATCAACTGAGTCTTTT 59.849 38.462 0.00 0.00 37.28 2.27
8120 8244 5.646793 CACCATCATCATCAACTGAGTCTTT 59.353 40.000 0.00 0.00 37.28 2.52
8121 8245 5.183969 CACCATCATCATCAACTGAGTCTT 58.816 41.667 0.00 0.00 37.28 3.01
8122 8246 4.224594 ACACCATCATCATCAACTGAGTCT 59.775 41.667 0.00 0.00 37.28 3.24
8123 8247 4.331992 CACACCATCATCATCAACTGAGTC 59.668 45.833 0.00 0.00 37.28 3.36
8124 8248 4.259356 CACACCATCATCATCAACTGAGT 58.741 43.478 0.00 0.00 37.28 3.41
8125 8249 4.259356 ACACACCATCATCATCAACTGAG 58.741 43.478 0.00 0.00 37.28 3.35
8126 8250 4.019950 AGACACACCATCATCATCAACTGA 60.020 41.667 0.00 0.00 38.53 3.41
8127 8251 4.094442 CAGACACACCATCATCATCAACTG 59.906 45.833 0.00 0.00 0.00 3.16
8128 8252 4.259356 CAGACACACCATCATCATCAACT 58.741 43.478 0.00 0.00 0.00 3.16
8129 8253 3.181503 GCAGACACACCATCATCATCAAC 60.182 47.826 0.00 0.00 0.00 3.18
8130 8254 3.011818 GCAGACACACCATCATCATCAA 58.988 45.455 0.00 0.00 0.00 2.57
8131 8255 2.635714 GCAGACACACCATCATCATCA 58.364 47.619 0.00 0.00 0.00 3.07
8132 8256 1.945394 GGCAGACACACCATCATCATC 59.055 52.381 0.00 0.00 0.00 2.92
8133 8257 1.282738 TGGCAGACACACCATCATCAT 59.717 47.619 0.00 0.00 0.00 2.45
8134 8258 0.691904 TGGCAGACACACCATCATCA 59.308 50.000 0.00 0.00 0.00 3.07
8135 8259 2.048444 ATGGCAGACACACCATCATC 57.952 50.000 0.00 0.00 43.26 2.92
8140 8264 2.347114 CGGATGGCAGACACACCA 59.653 61.111 0.00 0.00 41.06 4.17
8141 8265 1.741770 GACGGATGGCAGACACACC 60.742 63.158 0.00 0.00 0.00 4.16
8142 8266 0.391661 ATGACGGATGGCAGACACAC 60.392 55.000 0.00 0.00 0.00 3.82
8143 8267 0.324614 AATGACGGATGGCAGACACA 59.675 50.000 0.00 0.00 0.00 3.72
8144 8268 1.398390 GAAATGACGGATGGCAGACAC 59.602 52.381 0.00 0.00 0.00 3.67
8145 8269 1.278985 AGAAATGACGGATGGCAGACA 59.721 47.619 0.00 0.00 0.00 3.41
8146 8270 2.029838 AGAAATGACGGATGGCAGAC 57.970 50.000 0.00 0.00 0.00 3.51
8147 8271 3.531538 GTTAGAAATGACGGATGGCAGA 58.468 45.455 0.00 0.00 0.00 4.26
8148 8272 2.614057 GGTTAGAAATGACGGATGGCAG 59.386 50.000 0.00 0.00 0.00 4.85
8149 8273 2.026729 TGGTTAGAAATGACGGATGGCA 60.027 45.455 0.00 0.00 0.00 4.92
8150 8274 2.639065 TGGTTAGAAATGACGGATGGC 58.361 47.619 0.00 0.00 0.00 4.40
8151 8275 4.450976 TGATGGTTAGAAATGACGGATGG 58.549 43.478 0.00 0.00 0.00 3.51
8152 8276 5.359756 TCTGATGGTTAGAAATGACGGATG 58.640 41.667 0.00 0.00 0.00 3.51
8153 8277 5.614324 TCTGATGGTTAGAAATGACGGAT 57.386 39.130 0.00 0.00 0.00 4.18
8154 8278 5.363868 AGATCTGATGGTTAGAAATGACGGA 59.636 40.000 0.00 0.00 0.00 4.69
8155 8279 5.464722 CAGATCTGATGGTTAGAAATGACGG 59.535 44.000 18.34 0.00 0.00 4.79
8156 8280 5.050499 GCAGATCTGATGGTTAGAAATGACG 60.050 44.000 27.04 0.00 0.00 4.35
8157 8281 5.819379 TGCAGATCTGATGGTTAGAAATGAC 59.181 40.000 27.04 3.05 0.00 3.06
8158 8282 5.993055 TGCAGATCTGATGGTTAGAAATGA 58.007 37.500 27.04 0.00 0.00 2.57
8159 8283 6.711194 AGATGCAGATCTGATGGTTAGAAATG 59.289 38.462 27.04 0.00 37.56 2.32
8160 8284 6.839454 AGATGCAGATCTGATGGTTAGAAAT 58.161 36.000 27.04 3.30 37.56 2.17
8161 8285 6.244552 AGATGCAGATCTGATGGTTAGAAA 57.755 37.500 27.04 0.00 37.56 2.52
8162 8286 5.883685 AGATGCAGATCTGATGGTTAGAA 57.116 39.130 27.04 0.00 37.56 2.10
8163 8287 6.983906 TTAGATGCAGATCTGATGGTTAGA 57.016 37.500 27.04 1.76 39.44 2.10
8164 8288 7.384477 TCATTAGATGCAGATCTGATGGTTAG 58.616 38.462 27.04 8.95 46.01 2.34
8165 8289 7.307131 TCATTAGATGCAGATCTGATGGTTA 57.693 36.000 27.04 8.36 46.01 2.85
8166 8290 6.183810 TCATTAGATGCAGATCTGATGGTT 57.816 37.500 27.04 9.31 46.01 3.67
8167 8291 5.820404 TCATTAGATGCAGATCTGATGGT 57.180 39.130 27.04 9.80 46.01 3.55
8168 8292 6.655425 ACAATCATTAGATGCAGATCTGATGG 59.345 38.462 27.04 7.67 46.01 3.51
8169 8293 7.387948 TCACAATCATTAGATGCAGATCTGATG 59.612 37.037 27.04 18.19 46.77 3.07
8170 8294 7.450903 TCACAATCATTAGATGCAGATCTGAT 58.549 34.615 27.04 15.87 39.44 2.90
8171 8295 6.823497 TCACAATCATTAGATGCAGATCTGA 58.177 36.000 27.04 11.74 39.44 3.27
8172 8296 6.147985 CCTCACAATCATTAGATGCAGATCTG 59.852 42.308 18.84 18.84 39.44 2.90
8173 8297 6.183361 ACCTCACAATCATTAGATGCAGATCT 60.183 38.462 0.00 0.00 42.03 2.75
8174 8298 5.996513 ACCTCACAATCATTAGATGCAGATC 59.003 40.000 0.00 0.00 33.90 2.75
8175 8299 5.938279 ACCTCACAATCATTAGATGCAGAT 58.062 37.500 0.00 0.00 33.90 2.90
8176 8300 5.363562 ACCTCACAATCATTAGATGCAGA 57.636 39.130 0.00 0.00 33.90 4.26
8177 8301 6.293298 GCTTACCTCACAATCATTAGATGCAG 60.293 42.308 0.00 0.00 33.90 4.41
8178 8302 5.528690 GCTTACCTCACAATCATTAGATGCA 59.471 40.000 0.00 0.00 33.90 3.96
8179 8303 5.762218 AGCTTACCTCACAATCATTAGATGC 59.238 40.000 0.00 0.00 33.90 3.91
8180 8304 6.765036 ACAGCTTACCTCACAATCATTAGATG 59.235 38.462 0.00 0.00 33.90 2.90
8181 8305 6.765036 CACAGCTTACCTCACAATCATTAGAT 59.235 38.462 0.00 0.00 35.53 1.98
8182 8306 6.108687 CACAGCTTACCTCACAATCATTAGA 58.891 40.000 0.00 0.00 0.00 2.10
8183 8307 5.295292 CCACAGCTTACCTCACAATCATTAG 59.705 44.000 0.00 0.00 0.00 1.73
8184 8308 5.185454 CCACAGCTTACCTCACAATCATTA 58.815 41.667 0.00 0.00 0.00 1.90
8185 8309 4.012374 CCACAGCTTACCTCACAATCATT 58.988 43.478 0.00 0.00 0.00 2.57
8186 8310 3.614092 CCACAGCTTACCTCACAATCAT 58.386 45.455 0.00 0.00 0.00 2.45
8187 8311 2.875672 GCCACAGCTTACCTCACAATCA 60.876 50.000 0.00 0.00 35.50 2.57
8188 8312 1.740025 GCCACAGCTTACCTCACAATC 59.260 52.381 0.00 0.00 35.50 2.67
8189 8313 1.073763 TGCCACAGCTTACCTCACAAT 59.926 47.619 0.00 0.00 40.80 2.71
8190 8314 0.472044 TGCCACAGCTTACCTCACAA 59.528 50.000 0.00 0.00 40.80 3.33
8191 8315 0.692476 ATGCCACAGCTTACCTCACA 59.308 50.000 0.00 0.00 40.80 3.58
8192 8316 1.826385 AATGCCACAGCTTACCTCAC 58.174 50.000 0.00 0.00 40.80 3.51
8193 8317 2.584835 AAATGCCACAGCTTACCTCA 57.415 45.000 0.00 0.00 40.80 3.86
8194 8318 3.578688 CAAAAATGCCACAGCTTACCTC 58.421 45.455 0.00 0.00 40.80 3.85
8195 8319 2.289010 GCAAAAATGCCACAGCTTACCT 60.289 45.455 0.00 0.00 40.80 3.08
8196 8320 2.068519 GCAAAAATGCCACAGCTTACC 58.931 47.619 0.00 0.00 40.80 2.85
8197 8321 2.753296 TGCAAAAATGCCACAGCTTAC 58.247 42.857 0.00 0.00 40.80 2.34
8198 8322 3.129871 GTTGCAAAAATGCCACAGCTTA 58.870 40.909 0.00 0.00 40.80 3.09
8199 8323 1.941975 GTTGCAAAAATGCCACAGCTT 59.058 42.857 0.00 0.00 40.80 3.74
8200 8324 1.134461 TGTTGCAAAAATGCCACAGCT 60.134 42.857 0.00 0.00 35.87 4.24
8201 8325 1.297664 TGTTGCAAAAATGCCACAGC 58.702 45.000 0.00 0.00 35.87 4.40
8202 8326 2.288458 CCTTGTTGCAAAAATGCCACAG 59.712 45.455 1.65 3.75 40.66 3.66
8203 8327 2.286872 CCTTGTTGCAAAAATGCCACA 58.713 42.857 1.65 3.88 38.43 4.17
8204 8328 1.002576 GCCTTGTTGCAAAAATGCCAC 60.003 47.619 16.37 0.00 0.00 5.01
8205 8329 1.307097 GCCTTGTTGCAAAAATGCCA 58.693 45.000 16.37 0.00 0.00 4.92
8206 8330 0.592637 GGCCTTGTTGCAAAAATGCC 59.407 50.000 26.61 26.61 31.33 4.40
8207 8331 0.592637 GGGCCTTGTTGCAAAAATGC 59.407 50.000 18.34 18.34 0.00 3.56
8208 8332 1.237533 GGGGCCTTGTTGCAAAAATG 58.762 50.000 1.65 1.03 0.00 2.32
8209 8333 0.842635 TGGGGCCTTGTTGCAAAAAT 59.157 45.000 1.65 0.00 0.00 1.82
8210 8334 0.107459 GTGGGGCCTTGTTGCAAAAA 60.107 50.000 0.00 0.00 0.00 1.94
8211 8335 0.980231 AGTGGGGCCTTGTTGCAAAA 60.980 50.000 0.00 0.00 0.00 2.44
8212 8336 0.980231 AAGTGGGGCCTTGTTGCAAA 60.980 50.000 0.00 0.00 0.00 3.68
8213 8337 1.382420 AAGTGGGGCCTTGTTGCAA 60.382 52.632 0.84 0.00 0.00 4.08
8214 8338 1.832167 GAAGTGGGGCCTTGTTGCA 60.832 57.895 0.84 0.00 0.00 4.08
8215 8339 1.527433 GAGAAGTGGGGCCTTGTTGC 61.527 60.000 0.84 0.00 0.00 4.17
8216 8340 0.111253 AGAGAAGTGGGGCCTTGTTG 59.889 55.000 0.84 0.00 0.00 3.33
8217 8341 0.111253 CAGAGAAGTGGGGCCTTGTT 59.889 55.000 0.84 0.00 0.00 2.83
8218 8342 1.763770 CAGAGAAGTGGGGCCTTGT 59.236 57.895 0.84 0.00 0.00 3.16
8219 8343 1.676967 GCAGAGAAGTGGGGCCTTG 60.677 63.158 0.84 0.00 0.00 3.61
8220 8344 1.846712 GAGCAGAGAAGTGGGGCCTT 61.847 60.000 0.84 0.00 0.00 4.35
8221 8345 2.204059 AGCAGAGAAGTGGGGCCT 60.204 61.111 0.84 0.00 0.00 5.19
8222 8346 2.270527 GAGCAGAGAAGTGGGGCC 59.729 66.667 0.00 0.00 0.00 5.80
8223 8347 2.129555 TTGGAGCAGAGAAGTGGGGC 62.130 60.000 0.00 0.00 0.00 5.80
8224 8348 0.622665 ATTGGAGCAGAGAAGTGGGG 59.377 55.000 0.00 0.00 0.00 4.96
8225 8349 2.490903 CAAATTGGAGCAGAGAAGTGGG 59.509 50.000 0.00 0.00 0.00 4.61
8226 8350 2.094854 GCAAATTGGAGCAGAGAAGTGG 60.095 50.000 0.00 0.00 0.00 4.00
8227 8351 2.555325 TGCAAATTGGAGCAGAGAAGTG 59.445 45.455 0.00 0.00 35.51 3.16
8228 8352 2.867624 TGCAAATTGGAGCAGAGAAGT 58.132 42.857 0.00 0.00 35.51 3.01
8235 8359 2.224257 GGGTTTTCTGCAAATTGGAGCA 60.224 45.455 9.74 0.00 35.65 4.26
8236 8360 2.416747 GGGTTTTCTGCAAATTGGAGC 58.583 47.619 9.74 0.00 35.65 4.70
8237 8361 2.634453 AGGGGTTTTCTGCAAATTGGAG 59.366 45.455 8.26 8.26 37.15 3.86
8238 8362 2.688477 AGGGGTTTTCTGCAAATTGGA 58.312 42.857 0.00 0.00 0.00 3.53
8239 8363 3.490439 AAGGGGTTTTCTGCAAATTGG 57.510 42.857 0.00 0.00 0.00 3.16
8240 8364 5.213891 AGTAAGGGGTTTTCTGCAAATTG 57.786 39.130 0.00 0.00 0.00 2.32
8241 8365 6.954102 AGATAGTAAGGGGTTTTCTGCAAATT 59.046 34.615 0.00 0.00 0.00 1.82
8242 8366 6.494059 AGATAGTAAGGGGTTTTCTGCAAAT 58.506 36.000 0.00 0.00 0.00 2.32
8243 8367 5.887754 AGATAGTAAGGGGTTTTCTGCAAA 58.112 37.500 0.00 0.00 0.00 3.68
8244 8368 5.514500 AGATAGTAAGGGGTTTTCTGCAA 57.486 39.130 0.00 0.00 0.00 4.08
8245 8369 5.013704 TCAAGATAGTAAGGGGTTTTCTGCA 59.986 40.000 0.00 0.00 0.00 4.41
8246 8370 5.497474 TCAAGATAGTAAGGGGTTTTCTGC 58.503 41.667 0.00 0.00 0.00 4.26
8247 8371 7.094334 GGTTTCAAGATAGTAAGGGGTTTTCTG 60.094 40.741 0.00 0.00 0.00 3.02
8248 8372 6.946583 GGTTTCAAGATAGTAAGGGGTTTTCT 59.053 38.462 0.00 0.00 0.00 2.52
8249 8373 6.717997 TGGTTTCAAGATAGTAAGGGGTTTTC 59.282 38.462 0.00 0.00 0.00 2.29
8250 8374 6.616577 TGGTTTCAAGATAGTAAGGGGTTTT 58.383 36.000 0.00 0.00 0.00 2.43
8251 8375 6.208840 TGGTTTCAAGATAGTAAGGGGTTT 57.791 37.500 0.00 0.00 0.00 3.27
8252 8376 5.853572 TGGTTTCAAGATAGTAAGGGGTT 57.146 39.130 0.00 0.00 0.00 4.11
8253 8377 5.516062 GGTTGGTTTCAAGATAGTAAGGGGT 60.516 44.000 0.00 0.00 32.92 4.95
8254 8378 4.948004 GGTTGGTTTCAAGATAGTAAGGGG 59.052 45.833 0.00 0.00 32.92 4.79
8255 8379 5.414765 GTGGTTGGTTTCAAGATAGTAAGGG 59.585 44.000 0.00 0.00 32.92 3.95
8256 8380 6.001460 TGTGGTTGGTTTCAAGATAGTAAGG 58.999 40.000 0.00 0.00 32.92 2.69
8257 8381 7.148239 GGATGTGGTTGGTTTCAAGATAGTAAG 60.148 40.741 0.00 0.00 32.92 2.34
8258 8382 6.657541 GGATGTGGTTGGTTTCAAGATAGTAA 59.342 38.462 0.00 0.00 32.92 2.24
8259 8383 6.177610 GGATGTGGTTGGTTTCAAGATAGTA 58.822 40.000 0.00 0.00 32.92 1.82
8260 8384 5.010282 GGATGTGGTTGGTTTCAAGATAGT 58.990 41.667 0.00 0.00 32.92 2.12
8261 8385 4.399303 GGGATGTGGTTGGTTTCAAGATAG 59.601 45.833 0.00 0.00 32.92 2.08
8262 8386 4.044065 AGGGATGTGGTTGGTTTCAAGATA 59.956 41.667 0.00 0.00 32.92 1.98
8263 8387 3.165071 GGGATGTGGTTGGTTTCAAGAT 58.835 45.455 0.00 0.00 32.92 2.40
8264 8388 2.176798 AGGGATGTGGTTGGTTTCAAGA 59.823 45.455 0.00 0.00 32.92 3.02
8265 8389 2.558359 GAGGGATGTGGTTGGTTTCAAG 59.442 50.000 0.00 0.00 32.92 3.02
8266 8390 2.593026 GAGGGATGTGGTTGGTTTCAA 58.407 47.619 0.00 0.00 0.00 2.69
8267 8391 1.203001 GGAGGGATGTGGTTGGTTTCA 60.203 52.381 0.00 0.00 0.00 2.69
8268 8392 1.545841 GGAGGGATGTGGTTGGTTTC 58.454 55.000 0.00 0.00 0.00 2.78
8269 8393 0.114364 GGGAGGGATGTGGTTGGTTT 59.886 55.000 0.00 0.00 0.00 3.27
8270 8394 0.776080 AGGGAGGGATGTGGTTGGTT 60.776 55.000 0.00 0.00 0.00 3.67
8271 8395 1.151587 AGGGAGGGATGTGGTTGGT 60.152 57.895 0.00 0.00 0.00 3.67
8272 8396 1.207488 TGAGGGAGGGATGTGGTTGG 61.207 60.000 0.00 0.00 0.00 3.77
8273 8397 0.035056 GTGAGGGAGGGATGTGGTTG 60.035 60.000 0.00 0.00 0.00 3.77
8274 8398 1.208165 GGTGAGGGAGGGATGTGGTT 61.208 60.000 0.00 0.00 0.00 3.67
8275 8399 1.616628 GGTGAGGGAGGGATGTGGT 60.617 63.158 0.00 0.00 0.00 4.16
8276 8400 1.307343 AGGTGAGGGAGGGATGTGG 60.307 63.158 0.00 0.00 0.00 4.17
8277 8401 0.618680 TGAGGTGAGGGAGGGATGTG 60.619 60.000 0.00 0.00 0.00 3.21
8278 8402 0.344790 ATGAGGTGAGGGAGGGATGT 59.655 55.000 0.00 0.00 0.00 3.06
8279 8403 1.419387 GAATGAGGTGAGGGAGGGATG 59.581 57.143 0.00 0.00 0.00 3.51
8280 8404 1.697291 GGAATGAGGTGAGGGAGGGAT 60.697 57.143 0.00 0.00 0.00 3.85
8281 8405 0.326618 GGAATGAGGTGAGGGAGGGA 60.327 60.000 0.00 0.00 0.00 4.20
8282 8406 0.327000 AGGAATGAGGTGAGGGAGGG 60.327 60.000 0.00 0.00 0.00 4.30
8283 8407 1.589414 AAGGAATGAGGTGAGGGAGG 58.411 55.000 0.00 0.00 0.00 4.30
8284 8408 3.379452 AGTAAGGAATGAGGTGAGGGAG 58.621 50.000 0.00 0.00 0.00 4.30
8285 8409 3.491766 AGTAAGGAATGAGGTGAGGGA 57.508 47.619 0.00 0.00 0.00 4.20
8286 8410 4.547671 TCTAGTAAGGAATGAGGTGAGGG 58.452 47.826 0.00 0.00 0.00 4.30
8287 8411 5.068460 CACTCTAGTAAGGAATGAGGTGAGG 59.932 48.000 0.00 0.00 0.00 3.86
8288 8412 5.654650 ACACTCTAGTAAGGAATGAGGTGAG 59.345 44.000 0.00 0.00 0.00 3.51
8289 8413 5.580998 ACACTCTAGTAAGGAATGAGGTGA 58.419 41.667 0.00 0.00 0.00 4.02
8290 8414 5.923733 ACACTCTAGTAAGGAATGAGGTG 57.076 43.478 0.00 0.00 0.00 4.00
8291 8415 6.936968 AAACACTCTAGTAAGGAATGAGGT 57.063 37.500 0.00 0.00 0.00 3.85
8292 8416 8.097662 AGAAAAACACTCTAGTAAGGAATGAGG 58.902 37.037 0.00 0.00 0.00 3.86
8293 8417 9.495572 AAGAAAAACACTCTAGTAAGGAATGAG 57.504 33.333 0.00 0.00 0.00 2.90
8294 8418 9.847224 AAAGAAAAACACTCTAGTAAGGAATGA 57.153 29.630 0.00 0.00 0.00 2.57
8296 8420 9.847224 TGAAAGAAAAACACTCTAGTAAGGAAT 57.153 29.630 0.00 0.00 0.00 3.01
8297 8421 9.675464 TTGAAAGAAAAACACTCTAGTAAGGAA 57.325 29.630 0.00 0.00 0.00 3.36
8298 8422 9.326413 CTTGAAAGAAAAACACTCTAGTAAGGA 57.674 33.333 0.00 0.00 0.00 3.36
8299 8423 9.110502 ACTTGAAAGAAAAACACTCTAGTAAGG 57.889 33.333 0.00 0.00 0.00 2.69
8303 8427 8.793592 ACAAACTTGAAAGAAAAACACTCTAGT 58.206 29.630 0.00 0.00 0.00 2.57
8304 8428 9.065871 CACAAACTTGAAAGAAAAACACTCTAG 57.934 33.333 0.00 0.00 0.00 2.43
8305 8429 8.788806 TCACAAACTTGAAAGAAAAACACTCTA 58.211 29.630 0.00 0.00 0.00 2.43
8306 8430 7.657336 TCACAAACTTGAAAGAAAAACACTCT 58.343 30.769 0.00 0.00 0.00 3.24
8307 8431 7.867445 TCACAAACTTGAAAGAAAAACACTC 57.133 32.000 0.00 0.00 0.00 3.51
8308 8432 7.708752 TGTTCACAAACTTGAAAGAAAAACACT 59.291 29.630 0.00 0.00 37.24 3.55
8309 8433 7.846485 TGTTCACAAACTTGAAAGAAAAACAC 58.154 30.769 0.00 0.00 37.24 3.32
8310 8434 8.494347 CATGTTCACAAACTTGAAAGAAAAACA 58.506 29.630 0.00 0.00 40.97 2.83
8311 8435 8.495148 ACATGTTCACAAACTTGAAAGAAAAAC 58.505 29.630 10.12 0.00 40.97 2.43
8312 8436 8.600449 ACATGTTCACAAACTTGAAAGAAAAA 57.400 26.923 10.12 0.00 40.97 1.94
8313 8437 9.868277 ATACATGTTCACAAACTTGAAAGAAAA 57.132 25.926 2.30 0.00 40.97 2.29
8314 8438 9.868277 AATACATGTTCACAAACTTGAAAGAAA 57.132 25.926 2.30 0.00 40.97 2.52
8327 8451 9.952030 TCCAAAGTAGAATAATACATGTTCACA 57.048 29.630 2.30 0.00 0.00 3.58
8331 8455 9.273016 CGGATCCAAAGTAGAATAATACATGTT 57.727 33.333 13.41 0.00 0.00 2.71
8332 8456 8.429641 ACGGATCCAAAGTAGAATAATACATGT 58.570 33.333 13.41 2.69 0.00 3.21
8333 8457 8.833231 ACGGATCCAAAGTAGAATAATACATG 57.167 34.615 13.41 0.00 0.00 3.21
8334 8458 9.273016 CAACGGATCCAAAGTAGAATAATACAT 57.727 33.333 13.41 0.00 0.00 2.29
8335 8459 7.225931 GCAACGGATCCAAAGTAGAATAATACA 59.774 37.037 13.41 0.00 0.00 2.29
8336 8460 7.225931 TGCAACGGATCCAAAGTAGAATAATAC 59.774 37.037 13.41 0.00 0.00 1.89
8337 8461 7.276658 TGCAACGGATCCAAAGTAGAATAATA 58.723 34.615 13.41 0.00 0.00 0.98
8338 8462 6.119536 TGCAACGGATCCAAAGTAGAATAAT 58.880 36.000 13.41 0.00 0.00 1.28
8339 8463 5.492895 TGCAACGGATCCAAAGTAGAATAA 58.507 37.500 13.41 0.00 0.00 1.40
8340 8464 5.092554 TGCAACGGATCCAAAGTAGAATA 57.907 39.130 13.41 0.00 0.00 1.75
8341 8465 3.950397 TGCAACGGATCCAAAGTAGAAT 58.050 40.909 13.41 0.00 0.00 2.40
8342 8466 3.410631 TGCAACGGATCCAAAGTAGAA 57.589 42.857 13.41 0.00 0.00 2.10
8343 8467 3.071479 GTTGCAACGGATCCAAAGTAGA 58.929 45.455 14.90 0.00 0.00 2.59
8344 8468 3.471495 GTTGCAACGGATCCAAAGTAG 57.529 47.619 14.90 0.00 0.00 2.57
8357 8481 2.655044 GTGCCTGTGCGTTGCAAC 60.655 61.111 19.89 19.89 41.47 4.17
8358 8482 2.014064 AATGTGCCTGTGCGTTGCAA 62.014 50.000 0.00 0.00 41.47 4.08
8359 8483 2.488403 AATGTGCCTGTGCGTTGCA 61.488 52.632 0.00 0.00 41.78 4.08
8360 8484 2.017783 CAATGTGCCTGTGCGTTGC 61.018 57.895 0.00 0.00 41.78 4.17
8361 8485 2.017783 GCAATGTGCCTGTGCGTTG 61.018 57.895 0.00 0.00 41.78 4.10
8362 8486 0.888736 TAGCAATGTGCCTGTGCGTT 60.889 50.000 0.00 0.00 46.52 4.84
8363 8487 1.300971 CTAGCAATGTGCCTGTGCGT 61.301 55.000 0.00 0.00 46.52 5.24
8364 8488 1.300971 ACTAGCAATGTGCCTGTGCG 61.301 55.000 0.00 0.00 46.52 5.34
8365 8489 1.737838 TACTAGCAATGTGCCTGTGC 58.262 50.000 0.00 0.00 46.52 4.57
8403 8527 9.112725 GGCATGCACTTCAATCACATATATATA 57.887 33.333 21.36 0.00 0.00 0.86
8413 8537 1.179152 CCAGGCATGCACTTCAATCA 58.821 50.000 21.36 0.00 0.00 2.57
8548 8673 1.454847 TTTGCGACCAAACAGGGCT 60.455 52.632 0.00 0.00 46.64 5.19
8561 8686 6.582437 AACTTTGGTCAAAATTAGTTTGCG 57.418 33.333 0.00 0.00 45.38 4.85
8645 8790 2.095567 GCGAGTTACGGAGTACAACAGA 60.096 50.000 0.00 0.00 45.76 3.41
8647 8792 1.608109 TGCGAGTTACGGAGTACAACA 59.392 47.619 0.00 0.00 45.76 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.