Multiple sequence alignment - TraesCS6B01G373100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G373100 chr6B 100.000 4963 0 0 1 4963 646257156 646262118 0.000000e+00 9166.0
1 TraesCS6B01G373100 chr6B 92.857 56 4 0 4765 4820 574023808 574023753 1.150000e-11 82.4
2 TraesCS6B01G373100 chr6D 87.133 2829 259 48 1935 4679 429024118 429026925 0.000000e+00 3110.0
3 TraesCS6B01G373100 chr6D 88.745 1937 161 22 1 1922 429022015 429023909 0.000000e+00 2316.0
4 TraesCS6B01G373100 chr6D 90.000 60 6 0 4765 4824 383747869 383747810 1.480000e-10 78.7
5 TraesCS6B01G373100 chr6D 95.745 47 2 0 4771 4817 431932158 431932204 5.330000e-10 76.8
6 TraesCS6B01G373100 chr6A 86.483 2064 183 49 2971 4953 574273932 574275980 0.000000e+00 2178.0
7 TraesCS6B01G373100 chr6A 88.281 1536 133 19 395 1924 574265463 574266957 0.000000e+00 1796.0
8 TraesCS6B01G373100 chr6A 87.768 1071 104 12 1935 2980 574271146 574272214 0.000000e+00 1227.0
9 TraesCS6B01G373100 chr6A 89.744 390 40 0 3 392 574264796 574265185 2.670000e-137 499.0
10 TraesCS6B01G373100 chr6A 95.122 41 2 0 4780 4820 525994925 525994885 1.150000e-06 65.8
11 TraesCS6B01G373100 chr5B 94.231 52 2 1 4771 4822 39738084 39738134 1.480000e-10 78.7
12 TraesCS6B01G373100 chr3A 72.632 285 53 21 3502 3773 46988843 46989115 2.480000e-08 71.3
13 TraesCS6B01G373100 chr1D 92.857 42 3 0 4776 4817 87762532 87762573 1.490000e-05 62.1
14 TraesCS6B01G373100 chr1B 94.872 39 2 0 4779 4817 141291393 141291431 1.490000e-05 62.1
15 TraesCS6B01G373100 chr1A 92.857 42 3 0 4776 4817 84009952 84009993 1.490000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G373100 chr6B 646257156 646262118 4962 False 9166.0 9166 100.0000 1 4963 1 chr6B.!!$F1 4962
1 TraesCS6B01G373100 chr6D 429022015 429026925 4910 False 2713.0 3110 87.9390 1 4679 2 chr6D.!!$F2 4678
2 TraesCS6B01G373100 chr6A 574271146 574275980 4834 False 1702.5 2178 87.1255 1935 4953 2 chr6A.!!$F2 3018
3 TraesCS6B01G373100 chr6A 574264796 574266957 2161 False 1147.5 1796 89.0125 3 1924 2 chr6A.!!$F1 1921

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
612 888 0.103755 TGGTTTGCACGTGTACGGTA 59.896 50.0 18.38 0.0 44.95 4.02 F
1434 1715 0.039978 CTGAGGCTATCTACACCGCG 60.040 60.0 0.00 0.0 0.00 6.46 F
2294 2795 0.039165 CTTGTGGCGCTTTTCTTCCC 60.039 55.0 7.64 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2101 2582 0.105408 AAAGCTACCACGTCAACGGT 59.895 50.000 7.53 0.57 44.95 4.83 R
2586 3092 0.962356 CTCCACAAGACACCCCATGC 60.962 60.000 0.00 0.00 0.00 4.06 R
4032 6302 1.134401 CGCTGGTGGGAAGTATCATGT 60.134 52.381 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 0.679640 GGGGACGCAAATGACCATCA 60.680 55.000 0.00 0.00 0.00 3.07
75 76 4.014406 TCAAAGATGACTCGCCACTACTA 58.986 43.478 0.00 0.00 0.00 1.82
118 119 3.276846 GGCCACAAACGCACGACT 61.277 61.111 0.00 0.00 0.00 4.18
120 121 2.631428 CCACAAACGCACGACTGG 59.369 61.111 0.00 0.00 0.00 4.00
136 137 4.135306 CGACTGGCCTTCTGTATAGTCTA 58.865 47.826 3.32 0.00 34.05 2.59
146 147 6.263617 CCTTCTGTATAGTCTAGAACCTCACC 59.736 46.154 0.00 0.00 0.00 4.02
149 150 7.411808 TCTGTATAGTCTAGAACCTCACCTTT 58.588 38.462 0.00 0.00 0.00 3.11
194 195 4.392921 AAGATATCAACACTAGTGCGCT 57.607 40.909 22.90 4.58 0.00 5.92
238 239 2.030457 GCAACCCGTAAATCACATCTCG 59.970 50.000 0.00 0.00 0.00 4.04
243 244 2.782192 CCGTAAATCACATCTCGTCGTC 59.218 50.000 0.00 0.00 0.00 4.20
255 256 0.592637 TCGTCGTCTAAGGCAAACGA 59.407 50.000 0.00 0.00 42.59 3.85
259 260 2.155155 GTCGTCTAAGGCAAACGAAGTG 59.845 50.000 0.00 0.00 45.00 3.16
276 277 2.032681 GGACACTTTCCCAGCGCT 59.967 61.111 2.64 2.64 38.70 5.92
287 288 2.042259 CCAGCGCTGCCTTCATCAA 61.042 57.895 31.96 0.00 0.00 2.57
290 291 2.334946 GCGCTGCCTTCATCAACCA 61.335 57.895 0.00 0.00 0.00 3.67
351 352 6.677913 CGGCAAAAATAAGAAAAGGAAGAGA 58.322 36.000 0.00 0.00 0.00 3.10
380 381 1.837499 GACATAGGGCTAGGGCGGT 60.837 63.158 0.00 0.00 39.81 5.68
383 384 3.406113 ATAGGGCTAGGGCGGTGGT 62.406 63.158 0.00 0.00 39.81 4.16
384 385 2.027434 ATAGGGCTAGGGCGGTGGTA 62.027 60.000 0.00 0.00 39.81 3.25
392 393 2.750237 GGCGGTGGTAGGCTTTGG 60.750 66.667 0.00 0.00 0.00 3.28
393 669 2.750237 GCGGTGGTAGGCTTTGGG 60.750 66.667 0.00 0.00 0.00 4.12
421 697 3.459969 AGGAAGAAGTCACTCCCAAACTT 59.540 43.478 0.00 0.00 36.00 2.66
451 727 5.936372 TCATCAGGACATGCTATTAAGATGC 59.064 40.000 0.00 0.00 32.58 3.91
455 731 4.993584 AGGACATGCTATTAAGATGCTTCG 59.006 41.667 0.00 0.00 0.00 3.79
466 742 4.489679 AAGATGCTTCGGTTCAGTTTTC 57.510 40.909 0.00 0.00 0.00 2.29
478 754 3.799137 TCAGTTTTCGTACGCCATTTC 57.201 42.857 11.24 0.00 0.00 2.17
504 780 7.201821 CCACACATTTCCTTTTCAAGAGTACTT 60.202 37.037 0.00 0.00 36.73 2.24
505 781 7.857885 CACACATTTCCTTTTCAAGAGTACTTC 59.142 37.037 0.00 0.00 33.70 3.01
506 782 7.072030 CACATTTCCTTTTCAAGAGTACTTCG 58.928 38.462 0.00 0.00 33.70 3.79
515 791 8.706492 TTTTCAAGAGTACTTCGTCTGTAAAA 57.294 30.769 0.00 0.00 33.70 1.52
557 833 6.344500 AGTACATGATAACCAGCTTTCTCTG 58.656 40.000 0.00 0.00 0.00 3.35
580 856 3.102052 TCAAACTCGTGTAAGGACCAC 57.898 47.619 0.00 0.00 0.00 4.16
605 881 0.862490 TACGACATGGTTTGCACGTG 59.138 50.000 12.28 12.28 40.22 4.49
606 882 1.092921 ACGACATGGTTTGCACGTGT 61.093 50.000 18.38 0.58 39.16 4.49
607 883 0.862490 CGACATGGTTTGCACGTGTA 59.138 50.000 18.38 10.46 0.00 2.90
608 884 1.397945 CGACATGGTTTGCACGTGTAC 60.398 52.381 18.38 12.56 0.00 2.90
609 885 0.584396 ACATGGTTTGCACGTGTACG 59.416 50.000 18.38 2.43 46.33 3.67
610 886 0.110419 CATGGTTTGCACGTGTACGG 60.110 55.000 18.38 3.44 44.95 4.02
611 887 0.533308 ATGGTTTGCACGTGTACGGT 60.533 50.000 18.38 3.08 44.95 4.83
612 888 0.103755 TGGTTTGCACGTGTACGGTA 59.896 50.000 18.38 0.00 44.95 4.02
613 889 0.508213 GGTTTGCACGTGTACGGTAC 59.492 55.000 18.38 11.33 44.95 3.34
614 890 1.490621 GTTTGCACGTGTACGGTACT 58.509 50.000 18.38 0.00 44.95 2.73
615 891 2.606795 GGTTTGCACGTGTACGGTACTA 60.607 50.000 18.38 3.51 44.95 1.82
616 892 2.330231 TTGCACGTGTACGGTACTAC 57.670 50.000 18.38 13.26 44.95 2.73
617 893 1.233919 TGCACGTGTACGGTACTACA 58.766 50.000 18.38 7.34 44.95 2.74
618 894 1.197492 TGCACGTGTACGGTACTACAG 59.803 52.381 18.38 12.53 44.95 2.74
619 895 1.197721 GCACGTGTACGGTACTACAGT 59.802 52.381 18.38 13.00 44.95 3.55
645 921 8.871686 ATACATGTGAAGAACAAAAGGAAAAC 57.128 30.769 9.11 0.00 43.61 2.43
646 922 6.696411 ACATGTGAAGAACAAAAGGAAAACA 58.304 32.000 0.00 0.00 43.61 2.83
649 925 8.971321 CATGTGAAGAACAAAAGGAAAACATAG 58.029 33.333 0.00 0.00 43.61 2.23
650 926 8.287439 TGTGAAGAACAAAAGGAAAACATAGA 57.713 30.769 0.00 0.00 35.24 1.98
704 980 1.337703 TGCACCATCACTCACTTTTGC 59.662 47.619 0.00 0.00 0.00 3.68
720 996 8.334263 TCACTTTTGCTGTTGTGATGATATTA 57.666 30.769 0.00 0.00 34.94 0.98
758 1034 4.982701 GGCAGGGTGGTTGCAGCT 62.983 66.667 0.00 0.00 43.28 4.24
862 1138 1.742831 GCGGTGCTAACATTCCAATCA 59.257 47.619 0.00 0.00 0.00 2.57
871 1147 8.338259 GTGCTAACATTCCAATCACAATACTAG 58.662 37.037 0.00 0.00 0.00 2.57
885 1161 4.406003 ACAATACTAGTCCGAGAAAGGCAT 59.594 41.667 0.00 0.00 0.00 4.40
897 1173 5.007724 CCGAGAAAGGCATAACCAAAGATAC 59.992 44.000 0.00 0.00 43.14 2.24
931 1207 0.599060 TGCATCCAATGTGTGTGCAG 59.401 50.000 0.00 0.00 40.51 4.41
945 1221 3.118775 TGTGTGCAGCTATAGGGTAAGTG 60.119 47.826 1.04 0.00 0.00 3.16
950 1226 4.653801 TGCAGCTATAGGGTAAGTGATTCA 59.346 41.667 1.04 0.00 0.00 2.57
957 1233 2.124411 GGGTAAGTGATTCAGGGCCTA 58.876 52.381 5.28 0.00 0.00 3.93
966 1242 0.698238 TTCAGGGCCTAAGTGCACAT 59.302 50.000 21.04 10.23 37.02 3.21
977 1253 5.049129 GCCTAAGTGCACATCCAATATCTTC 60.049 44.000 21.04 0.00 0.00 2.87
987 1263 5.163258 ACATCCAATATCTTCGCTTCTTCCT 60.163 40.000 0.00 0.00 0.00 3.36
990 1266 4.443457 CCAATATCTTCGCTTCTTCCTGGA 60.443 45.833 0.00 0.00 0.00 3.86
1007 1283 1.382692 GGAAGCTCTGCAATGGAGGC 61.383 60.000 1.05 4.60 0.00 4.70
1014 1290 3.285484 CTCTGCAATGGAGGCTAATGTT 58.715 45.455 1.05 0.00 0.00 2.71
1043 1319 3.839432 GCGCCGGCTCTACCTCTT 61.839 66.667 26.68 0.00 35.61 2.85
1068 1344 4.335594 GTCTATAATTGGGCTGCGTTCTTT 59.664 41.667 0.00 0.00 0.00 2.52
1085 1361 4.437682 TCTTTGGATGGTCAGTTGTTCT 57.562 40.909 0.00 0.00 0.00 3.01
1089 1365 2.906389 TGGATGGTCAGTTGTTCTAGCT 59.094 45.455 0.00 0.00 0.00 3.32
1090 1366 3.265791 GGATGGTCAGTTGTTCTAGCTG 58.734 50.000 0.00 0.00 38.82 4.24
1101 1377 7.966204 TCAGTTGTTCTAGCTGTTGTTTTTAAC 59.034 33.333 0.00 0.00 38.61 2.01
1150 1426 5.774690 TGTTTGGCAGAGGATGAAACTTATT 59.225 36.000 0.00 0.00 30.61 1.40
1213 1494 2.230508 TGAACACACCCGATCTCTACAC 59.769 50.000 0.00 0.00 0.00 2.90
1228 1509 4.080919 TCTCTACACAATTAGGCTGCACAT 60.081 41.667 0.50 0.00 0.00 3.21
1237 1518 1.813513 AGGCTGCACATAGTCAACAC 58.186 50.000 0.50 0.00 0.00 3.32
1246 1527 6.459923 TGCACATAGTCAACACTAACATACA 58.540 36.000 0.00 0.00 38.66 2.29
1248 1529 6.453791 GCACATAGTCAACACTAACATACACG 60.454 42.308 0.00 0.00 38.66 4.49
1251 1532 3.739300 AGTCAACACTAACATACACGCAC 59.261 43.478 0.00 0.00 0.00 5.34
1262 1543 3.120683 ACATACACGCACAAAGAATCACG 60.121 43.478 0.00 0.00 0.00 4.35
1264 1545 0.235665 CACGCACAAAGAATCACGCT 59.764 50.000 0.00 0.00 0.00 5.07
1273 1554 2.712057 AGAATCACGCTGGCAAAAAG 57.288 45.000 0.00 0.00 0.00 2.27
1294 1575 4.612932 GCAAAGTCATGCAAAACCAAAA 57.387 36.364 0.00 0.00 45.70 2.44
1295 1576 5.172460 GCAAAGTCATGCAAAACCAAAAT 57.828 34.783 0.00 0.00 45.70 1.82
1342 1623 8.352942 AGAGGTCATTTGTTACTTTGTTTGATC 58.647 33.333 0.00 0.00 0.00 2.92
1412 1693 2.205022 TTGGCATTGTTGGAGAGGAG 57.795 50.000 0.00 0.00 0.00 3.69
1434 1715 0.039978 CTGAGGCTATCTACACCGCG 60.040 60.000 0.00 0.00 0.00 6.46
1458 1739 4.063967 CGGCCGCTACTGGTCACA 62.064 66.667 14.67 0.00 31.24 3.58
1482 1763 1.271926 ACTGCCGCTTTAATGGAGGTT 60.272 47.619 0.00 0.00 0.00 3.50
1493 1774 7.576856 CGCTTTAATGGAGGTTTGGTATTCTTT 60.577 37.037 0.00 0.00 0.00 2.52
1494 1775 7.545615 GCTTTAATGGAGGTTTGGTATTCTTTG 59.454 37.037 0.00 0.00 0.00 2.77
1506 1787 8.564574 GTTTGGTATTCTTTGTCATGTCAGTTA 58.435 33.333 0.00 0.00 0.00 2.24
1507 1788 8.862325 TTGGTATTCTTTGTCATGTCAGTTAT 57.138 30.769 0.00 0.00 0.00 1.89
1636 1917 1.335810 CGCCCGCTATAGTCACACTTA 59.664 52.381 0.84 0.00 0.00 2.24
1637 1918 2.030185 CGCCCGCTATAGTCACACTTAT 60.030 50.000 0.84 0.00 0.00 1.73
1638 1919 3.189910 CGCCCGCTATAGTCACACTTATA 59.810 47.826 0.84 0.00 0.00 0.98
1639 1920 4.142447 CGCCCGCTATAGTCACACTTATAT 60.142 45.833 0.84 0.00 0.00 0.86
1668 1949 3.196685 ACTCTTGTCTCAGATAACCTGGC 59.803 47.826 0.00 0.00 43.12 4.85
1681 1966 2.271944 ACCTGGCCAACTTAGTGTTC 57.728 50.000 7.01 0.00 36.63 3.18
1690 1975 4.689345 GCCAACTTAGTGTTCGTAATGTCT 59.311 41.667 0.00 0.00 36.63 3.41
1706 1991 3.088194 TGTCTTCTTGTCGGTGTGTAC 57.912 47.619 0.00 0.00 0.00 2.90
1714 1999 3.364889 TGTCGGTGTGTACTTCTCTTG 57.635 47.619 0.00 0.00 0.00 3.02
1715 2000 2.059541 GTCGGTGTGTACTTCTCTTGC 58.940 52.381 0.00 0.00 0.00 4.01
1718 2003 3.570975 TCGGTGTGTACTTCTCTTGCTTA 59.429 43.478 0.00 0.00 0.00 3.09
1720 2005 4.929808 CGGTGTGTACTTCTCTTGCTTATT 59.070 41.667 0.00 0.00 0.00 1.40
1721 2006 5.062308 CGGTGTGTACTTCTCTTGCTTATTC 59.938 44.000 0.00 0.00 0.00 1.75
1722 2007 5.062308 GGTGTGTACTTCTCTTGCTTATTCG 59.938 44.000 0.00 0.00 0.00 3.34
1724 2009 5.862323 TGTGTACTTCTCTTGCTTATTCGTC 59.138 40.000 0.00 0.00 0.00 4.20
1725 2010 5.862323 GTGTACTTCTCTTGCTTATTCGTCA 59.138 40.000 0.00 0.00 0.00 4.35
1726 2011 6.531948 GTGTACTTCTCTTGCTTATTCGTCAT 59.468 38.462 0.00 0.00 0.00 3.06
1727 2012 7.063544 GTGTACTTCTCTTGCTTATTCGTCATT 59.936 37.037 0.00 0.00 0.00 2.57
1728 2013 8.248253 TGTACTTCTCTTGCTTATTCGTCATTA 58.752 33.333 0.00 0.00 0.00 1.90
1729 2014 7.763172 ACTTCTCTTGCTTATTCGTCATTAG 57.237 36.000 0.00 0.00 0.00 1.73
1783 2068 5.096443 TGGTACATCAATCATACACTGCA 57.904 39.130 0.00 0.00 0.00 4.41
1799 2084 3.414700 CACTCGCCGGTGCAGAAC 61.415 66.667 11.05 0.00 37.32 3.01
1842 2127 3.045634 ACTATGCTAACATGTGGGCCTA 58.954 45.455 17.04 12.07 37.04 3.93
1912 2197 1.302993 TTTTAGCCTTCGCCCGCTT 60.303 52.632 0.00 0.00 36.53 4.68
1951 2432 5.292834 TCGGATACATAGTCGGTCGATAATC 59.707 44.000 0.00 0.00 0.00 1.75
1952 2433 5.064325 CGGATACATAGTCGGTCGATAATCA 59.936 44.000 0.00 0.00 0.00 2.57
1969 2450 8.642432 TCGATAATCAGGTTAAATGACTCAGAT 58.358 33.333 0.00 0.00 0.00 2.90
2031 2512 2.183858 TTCTCGTGCGACCGTCTCTG 62.184 60.000 0.00 0.00 0.00 3.35
2034 2515 2.885861 GTGCGACCGTCTCTGGAT 59.114 61.111 0.00 0.00 0.00 3.41
2040 2521 2.014857 CGACCGTCTCTGGATAGTTGA 58.985 52.381 0.00 0.00 0.00 3.18
2049 2530 5.998363 GTCTCTGGATAGTTGAACCAAAAGT 59.002 40.000 0.00 0.00 33.14 2.66
2051 2532 6.043243 TCTCTGGATAGTTGAACCAAAAGTCT 59.957 38.462 0.00 0.00 33.14 3.24
2058 2539 9.331282 GATAGTTGAACCAAAAGTCTATATGCT 57.669 33.333 0.00 0.00 0.00 3.79
2063 2544 5.041191 ACCAAAAGTCTATATGCTCCTGG 57.959 43.478 0.00 0.00 0.00 4.45
2074 2555 2.401766 GCTCCTGGGCATTCACACG 61.402 63.158 0.00 0.00 0.00 4.49
2087 2568 4.641954 CATTCACACGCAGAAGTAATGAC 58.358 43.478 0.00 0.00 0.00 3.06
2088 2569 2.683968 TCACACGCAGAAGTAATGACC 58.316 47.619 0.00 0.00 0.00 4.02
2090 2571 3.002791 CACACGCAGAAGTAATGACCAT 58.997 45.455 0.00 0.00 0.00 3.55
2091 2572 3.002791 ACACGCAGAAGTAATGACCATG 58.997 45.455 0.00 0.00 0.00 3.66
2094 2575 3.270027 CGCAGAAGTAATGACCATGGAA 58.730 45.455 21.47 6.54 0.00 3.53
2095 2576 3.310774 CGCAGAAGTAATGACCATGGAAG 59.689 47.826 21.47 0.00 0.00 3.46
2096 2577 3.629398 GCAGAAGTAATGACCATGGAAGG 59.371 47.826 21.47 0.00 0.00 3.46
2097 2578 4.626287 GCAGAAGTAATGACCATGGAAGGA 60.626 45.833 21.47 0.00 0.00 3.36
2098 2579 5.688807 CAGAAGTAATGACCATGGAAGGAT 58.311 41.667 21.47 0.00 0.00 3.24
2100 2581 6.039047 CAGAAGTAATGACCATGGAAGGATTG 59.961 42.308 21.47 0.41 0.00 2.67
2101 2582 5.715439 AGTAATGACCATGGAAGGATTGA 57.285 39.130 21.47 0.00 0.00 2.57
2102 2583 5.440610 AGTAATGACCATGGAAGGATTGAC 58.559 41.667 21.47 5.76 0.00 3.18
2103 2584 2.806945 TGACCATGGAAGGATTGACC 57.193 50.000 21.47 0.00 39.35 4.02
2104 2585 1.065491 TGACCATGGAAGGATTGACCG 60.065 52.381 21.47 0.00 44.74 4.79
2106 2587 1.354368 ACCATGGAAGGATTGACCGTT 59.646 47.619 21.47 0.00 44.74 4.44
2156 2638 7.289310 TGCCAAGAAATTGGTATAGATGATCA 58.711 34.615 0.00 0.00 43.90 2.92
2173 2655 7.478322 AGATGATCAGTTAAACATGCAATCAC 58.522 34.615 0.09 0.00 0.00 3.06
2177 2659 5.316167 TCAGTTAAACATGCAATCACTCCT 58.684 37.500 0.00 0.00 0.00 3.69
2236 2737 4.870123 TTTTTGGATGACAACATGGGAG 57.130 40.909 0.00 0.00 39.19 4.30
2244 2745 0.968901 ACAACATGGGAGGCATGCTG 60.969 55.000 18.92 9.29 33.70 4.41
2249 2750 1.866483 ATGGGAGGCATGCTGACCAA 61.866 55.000 24.08 16.30 0.00 3.67
2255 2756 1.547372 AGGCATGCTGACCAAAATGTC 59.453 47.619 18.92 0.00 35.77 3.06
2294 2795 0.039165 CTTGTGGCGCTTTTCTTCCC 60.039 55.000 7.64 0.00 0.00 3.97
2299 2800 1.303317 GCGCTTTTCTTCCCTGGGA 60.303 57.895 12.53 12.53 0.00 4.37
2301 2802 1.308783 CGCTTTTCTTCCCTGGGAGC 61.309 60.000 16.38 13.49 31.21 4.70
2302 2803 0.967887 GCTTTTCTTCCCTGGGAGCC 60.968 60.000 16.38 0.00 31.21 4.70
2309 2810 1.284785 CTTCCCTGGGAGCCATTTGTA 59.715 52.381 16.38 0.00 31.21 2.41
2371 2874 9.696917 AGGTTTTTATTCTTTGAACATGATGAC 57.303 29.630 0.00 0.00 0.00 3.06
2387 2890 2.543777 TGACTGTGAGTTGCTAACCC 57.456 50.000 0.00 0.00 0.00 4.11
2411 2914 2.203266 TGTTGCATGGTGACGGCA 60.203 55.556 0.00 0.00 40.84 5.69
2412 2915 2.255252 GTTGCATGGTGACGGCAC 59.745 61.111 14.74 14.74 42.03 5.01
2420 2923 1.034838 TGGTGACGGCACTGCTTTTT 61.035 50.000 23.08 0.00 44.52 1.94
2489 2992 9.244292 TCTTCTAGTTGTACAGTATCATGTTCT 57.756 33.333 0.00 0.00 34.56 3.01
2624 3130 3.323979 GGAGCTTTCCCGAGGTATCAATA 59.676 47.826 0.00 0.00 0.00 1.90
2629 3135 5.179555 GCTTTCCCGAGGTATCAATATGAAC 59.820 44.000 0.00 0.00 0.00 3.18
2633 3139 4.755123 CCCGAGGTATCAATATGAACAACC 59.245 45.833 0.00 0.00 31.68 3.77
2637 3143 6.073058 CGAGGTATCAATATGAACAACCCATG 60.073 42.308 6.38 0.00 31.81 3.66
2662 3168 4.935352 AAGCAAGTCTGGAGCTATAGAG 57.065 45.455 3.21 0.00 37.70 2.43
2702 3208 7.275888 TCTCTTTATGATGCACAAAACAAGT 57.724 32.000 0.00 0.00 0.00 3.16
2715 3221 8.655092 TGCACAAAACAAGTTCTTGATTTAAAG 58.345 29.630 17.75 11.88 0.00 1.85
2719 3225 8.663911 CAAAACAAGTTCTTGATTTAAAGGCAA 58.336 29.630 17.75 0.45 0.00 4.52
2731 3237 9.434420 TTGATTTAAAGGCAATTGGTAAATGAG 57.566 29.630 7.72 0.00 0.00 2.90
2735 3241 9.838339 TTTAAAGGCAATTGGTAAATGAGAAAA 57.162 25.926 7.72 0.00 0.00 2.29
2777 3283 3.133901 TGCAACTCCTGAAAGTAGACACA 59.866 43.478 0.00 0.00 0.00 3.72
2778 3284 4.202357 TGCAACTCCTGAAAGTAGACACAT 60.202 41.667 0.00 0.00 0.00 3.21
2780 3286 6.109359 GCAACTCCTGAAAGTAGACACATAT 58.891 40.000 0.00 0.00 0.00 1.78
2781 3287 6.256757 GCAACTCCTGAAAGTAGACACATATC 59.743 42.308 0.00 0.00 0.00 1.63
2782 3288 7.323420 CAACTCCTGAAAGTAGACACATATCA 58.677 38.462 0.00 0.00 0.00 2.15
2822 3350 7.665559 TCATCAAATAGCCCATGGTAATACTTC 59.334 37.037 11.73 0.00 0.00 3.01
2876 3404 4.280929 ACTGTAAATTCAAAAGTGGAGCCC 59.719 41.667 0.00 0.00 0.00 5.19
2877 3405 4.219115 TGTAAATTCAAAAGTGGAGCCCA 58.781 39.130 0.00 0.00 0.00 5.36
2928 3456 9.817809 AGTAGTATCAATTAATGTTGTCGATGT 57.182 29.630 0.00 0.00 0.00 3.06
2942 3470 6.039941 TGTTGTCGATGTTGGTAATTTCCTTT 59.960 34.615 2.53 0.00 0.00 3.11
3003 5257 5.581605 TCTACACGTATGATTAACGGGAAC 58.418 41.667 4.72 0.00 46.58 3.62
3010 5264 5.464057 CGTATGATTAACGGGAACATAAGCA 59.536 40.000 0.00 0.00 36.71 3.91
3014 5268 7.867305 TGATTAACGGGAACATAAGCAAATA 57.133 32.000 0.00 0.00 28.54 1.40
3016 5270 8.740906 TGATTAACGGGAACATAAGCAAATAAA 58.259 29.630 0.00 0.00 28.54 1.40
3018 5272 8.918961 TTAACGGGAACATAAGCAAATAAATG 57.081 30.769 0.00 0.00 0.00 2.32
3033 5287 7.986889 AGCAAATAAATGTTTGGTTTCTCAACT 59.013 29.630 2.11 0.00 44.68 3.16
3053 5307 8.327941 TCAACTATATTGCCTGATCATTAAGC 57.672 34.615 0.00 0.00 0.00 3.09
3060 5314 3.441222 TGCCTGATCATTAAGCACACTTG 59.559 43.478 0.00 0.00 36.57 3.16
3116 5370 3.181436 CCTTGATCCTAGCATGGTCCATT 60.181 47.826 0.00 0.00 0.00 3.16
3203 5457 6.414408 AGAAAGCAGAATCAACATAAGACG 57.586 37.500 0.00 0.00 0.00 4.18
3206 5460 5.011090 AGCAGAATCAACATAAGACGCTA 57.989 39.130 0.00 0.00 0.00 4.26
3213 5467 5.933187 TCAACATAAGACGCTAAAAAGCA 57.067 34.783 0.00 0.00 34.41 3.91
3218 5472 3.898517 AAGACGCTAAAAAGCAACTCC 57.101 42.857 0.00 0.00 34.41 3.85
3232 5486 2.485814 GCAACTCCTGGTTCTTCATGTC 59.514 50.000 0.00 0.00 35.74 3.06
3234 5488 3.409026 ACTCCTGGTTCTTCATGTCAC 57.591 47.619 0.00 0.00 0.00 3.67
3240 5494 6.484288 TCCTGGTTCTTCATGTCACAATAAT 58.516 36.000 0.00 0.00 0.00 1.28
3257 5511 8.668353 TCACAATAATGCTTGAAGATCACTAAC 58.332 33.333 0.00 0.00 0.00 2.34
3259 5513 8.887717 ACAATAATGCTTGAAGATCACTAACTC 58.112 33.333 0.00 0.00 0.00 3.01
3266 5520 6.419484 TTGAAGATCACTAACTCAAGACCA 57.581 37.500 0.00 0.00 0.00 4.02
3268 5522 5.775195 TGAAGATCACTAACTCAAGACCAGA 59.225 40.000 0.00 0.00 0.00 3.86
3274 5528 7.540474 TCACTAACTCAAGACCAGAAGTTAT 57.460 36.000 0.00 0.00 0.00 1.89
3279 5533 5.542779 ACTCAAGACCAGAAGTTATGACAC 58.457 41.667 0.00 0.00 0.00 3.67
3313 5567 9.710900 GTTGAACCTAATCAATCCAAGATTTTT 57.289 29.630 0.00 0.00 41.09 1.94
3314 5568 9.927668 TTGAACCTAATCAATCCAAGATTTTTC 57.072 29.630 0.00 0.00 37.02 2.29
3413 5669 4.151121 TGAAGGAGACATTTGGATTTGCA 58.849 39.130 0.00 0.00 0.00 4.08
3453 5709 5.163237 TGGCTTAGGTTGGTATTGGATCTAC 60.163 44.000 0.00 0.00 0.00 2.59
3455 5711 6.354130 GCTTAGGTTGGTATTGGATCTACAA 58.646 40.000 0.00 0.00 34.41 2.41
3457 5713 7.012421 GCTTAGGTTGGTATTGGATCTACAAAG 59.988 40.741 0.00 0.00 33.48 2.77
3459 5715 6.415573 AGGTTGGTATTGGATCTACAAAGAC 58.584 40.000 0.00 0.00 33.57 3.01
3473 5729 7.776618 TCTACAAAGACCTCACATCTTAGAA 57.223 36.000 0.00 0.00 35.31 2.10
3545 5812 8.661257 CGATTGTTTGTAGGTATAACATGTTCA 58.339 33.333 15.85 1.78 32.39 3.18
3548 5815 8.192068 TGTTTGTAGGTATAACATGTTCATCG 57.808 34.615 15.85 0.00 0.00 3.84
3562 5829 8.046294 ACATGTTCATCGTACTCTATCCTATC 57.954 38.462 0.00 0.00 0.00 2.08
3569 5836 5.114780 TCGTACTCTATCCTATCGGTATGC 58.885 45.833 0.00 0.00 0.00 3.14
3599 5866 3.196901 AGTTGGCCTCATATACGTCACAA 59.803 43.478 3.32 0.00 0.00 3.33
3701 5970 5.734720 ACAGTTCTATATTGTGGGTGACTG 58.265 41.667 0.00 0.00 0.00 3.51
3702 5971 5.248477 ACAGTTCTATATTGTGGGTGACTGT 59.752 40.000 0.00 0.00 0.00 3.55
3723 5992 5.765510 TGTTGTCAGGCCTCCAATAAATAT 58.234 37.500 15.57 0.00 0.00 1.28
3810 6079 5.540400 TGGGTATCTATTTTCCAGGTACG 57.460 43.478 0.00 0.00 31.51 3.67
3886 6155 3.868077 CCTCTTCGTTTCATCTGGATGAC 59.132 47.826 12.18 3.22 46.49 3.06
3907 6176 3.181445 ACTGCAGGATTTCCACACTTGTA 60.181 43.478 19.93 0.00 38.89 2.41
3910 6179 2.742053 CAGGATTTCCACACTTGTACCG 59.258 50.000 0.00 0.00 38.89 4.02
3921 6190 4.506654 CACACTTGTACCGTTATATGCTCC 59.493 45.833 0.00 0.00 0.00 4.70
3941 6210 2.237392 CCTTAGGAGGAAGGTGGTCTTG 59.763 54.545 0.00 0.00 46.74 3.02
3954 6223 3.181466 GGTGGTCTTGTCAAAGGCAAAAT 60.181 43.478 0.00 0.00 39.96 1.82
3961 6230 1.994779 GTCAAAGGCAAAATCCGCATG 59.005 47.619 0.00 0.00 0.00 4.06
3965 6234 4.341806 TCAAAGGCAAAATCCGCATGATAT 59.658 37.500 0.00 0.00 31.83 1.63
3966 6235 4.942761 AAGGCAAAATCCGCATGATATT 57.057 36.364 0.00 0.00 31.83 1.28
3967 6236 6.040278 TCAAAGGCAAAATCCGCATGATATTA 59.960 34.615 0.00 0.00 31.83 0.98
3994 6263 8.526667 TCACAAGCTTTCTAGAGTATATGTCT 57.473 34.615 0.00 0.00 0.00 3.41
3995 6264 8.625651 TCACAAGCTTTCTAGAGTATATGTCTC 58.374 37.037 0.00 2.73 0.00 3.36
3997 6266 8.972127 ACAAGCTTTCTAGAGTATATGTCTCAA 58.028 33.333 0.00 0.00 34.73 3.02
3998 6267 9.462174 CAAGCTTTCTAGAGTATATGTCTCAAG 57.538 37.037 0.00 7.40 34.73 3.02
4007 6277 7.995289 AGAGTATATGTCTCAAGTGACTTCTG 58.005 38.462 0.00 0.00 37.79 3.02
4014 6284 5.053145 GTCTCAAGTGACTTCTGAATGTGT 58.947 41.667 0.00 0.00 34.39 3.72
4018 6288 4.679373 AGTGACTTCTGAATGTGTGAGT 57.321 40.909 0.00 0.00 0.00 3.41
4019 6289 5.028549 AGTGACTTCTGAATGTGTGAGTT 57.971 39.130 0.00 0.00 0.00 3.01
4031 6301 1.064060 GTGTGAGTTGTGTGCTTCCAC 59.936 52.381 0.00 0.00 42.40 4.02
4048 6323 2.238646 TCCACACATGATACTTCCCACC 59.761 50.000 0.00 0.00 0.00 4.61
4051 6326 2.292267 CACATGATACTTCCCACCAGC 58.708 52.381 0.00 0.00 0.00 4.85
4074 6349 7.059602 CAGCGTATATCTACTATTTGTGTGACG 59.940 40.741 0.00 0.00 0.00 4.35
4081 6356 6.509656 TCTACTATTTGTGTGACGTTGTTCT 58.490 36.000 0.00 0.00 0.00 3.01
4089 6364 4.155099 TGTGTGACGTTGTTCTCATGTTTT 59.845 37.500 0.00 0.00 0.00 2.43
4093 6368 6.481976 TGTGACGTTGTTCTCATGTTTTCTAT 59.518 34.615 0.00 0.00 0.00 1.98
4095 6370 6.128929 TGACGTTGTTCTCATGTTTTCTATCG 60.129 38.462 0.00 0.00 0.00 2.92
4097 6372 6.202188 ACGTTGTTCTCATGTTTTCTATCGTT 59.798 34.615 0.00 0.00 0.00 3.85
4100 6375 7.129109 TGTTCTCATGTTTTCTATCGTTTCC 57.871 36.000 0.00 0.00 0.00 3.13
4101 6376 6.148811 TGTTCTCATGTTTTCTATCGTTTCCC 59.851 38.462 0.00 0.00 0.00 3.97
4124 6399 3.885976 TCAATAAAGTTGGGGTGGTGA 57.114 42.857 0.00 0.00 0.00 4.02
4126 6401 2.215942 ATAAAGTTGGGGTGGTGAGC 57.784 50.000 0.00 0.00 0.00 4.26
4138 6413 2.358737 GTGAGCGTTCCCCACCTG 60.359 66.667 0.00 0.00 0.00 4.00
4142 6417 2.358737 GCGTTCCCCACCTGAGTG 60.359 66.667 0.00 0.00 44.12 3.51
4144 6419 2.836154 GTTCCCCACCTGAGTGCA 59.164 61.111 0.00 0.00 43.09 4.57
4159 6434 4.264543 GAGTGCAATTACTCAATCGGTG 57.735 45.455 3.88 0.00 45.03 4.94
4160 6435 3.932710 GAGTGCAATTACTCAATCGGTGA 59.067 43.478 3.88 0.00 45.03 4.02
4239 6538 4.525912 AAACTTTTGCATTCCTAGCCAG 57.474 40.909 0.00 0.00 0.00 4.85
4244 6543 2.148446 TGCATTCCTAGCCAGCAAAT 57.852 45.000 0.00 0.00 31.42 2.32
4266 6565 3.431922 TTTCCATACGACGAGGATGAC 57.568 47.619 0.00 0.00 44.10 3.06
4268 6567 2.371306 TCCATACGACGAGGATGACAA 58.629 47.619 0.00 0.00 44.10 3.18
4277 6576 2.894126 ACGAGGATGACAACTTCAGTCT 59.106 45.455 0.00 0.00 37.77 3.24
4285 6592 6.590292 GGATGACAACTTCAGTCTAAATCGAA 59.410 38.462 0.00 0.00 37.77 3.71
4288 6595 7.851508 TGACAACTTCAGTCTAAATCGAAAAG 58.148 34.615 0.00 0.00 36.94 2.27
4307 6614 4.568152 AAGTTGAGTATGTTGGTTGTGC 57.432 40.909 0.00 0.00 0.00 4.57
4316 6623 1.244816 GTTGGTTGTGCTAGGGTTCC 58.755 55.000 0.00 0.00 0.00 3.62
4336 6643 2.223021 CCGCACATCATTAAAGGACACG 60.223 50.000 0.00 0.00 0.00 4.49
4337 6644 2.670905 CGCACATCATTAAAGGACACGA 59.329 45.455 0.00 0.00 0.00 4.35
4363 6670 3.825014 GTGATGCCAATCTTATGGATGCT 59.175 43.478 0.00 0.00 43.54 3.79
4364 6671 3.824443 TGATGCCAATCTTATGGATGCTG 59.176 43.478 0.00 0.00 43.54 4.41
4382 6689 1.620819 CTGAAGTGGTAGCACAGAGGT 59.379 52.381 25.75 2.83 0.00 3.85
4413 6720 2.767505 GAGTTTCGGTGTGATCTTGGT 58.232 47.619 0.00 0.00 0.00 3.67
4416 6723 0.605319 TTCGGTGTGATCTTGGTGGC 60.605 55.000 0.00 0.00 0.00 5.01
4417 6724 1.302431 CGGTGTGATCTTGGTGGCA 60.302 57.895 0.00 0.00 0.00 4.92
4429 6736 2.113986 GTGGCACAGGCTGAGGTT 59.886 61.111 23.66 0.00 41.80 3.50
4449 6756 6.194235 AGGTTATCATTCAGGGTTTTATGCA 58.806 36.000 0.00 0.00 0.00 3.96
4450 6757 6.322201 AGGTTATCATTCAGGGTTTTATGCAG 59.678 38.462 0.00 0.00 0.00 4.41
4452 6759 7.147915 GGTTATCATTCAGGGTTTTATGCAGAA 60.148 37.037 0.00 0.00 0.00 3.02
4465 6772 7.602265 GGTTTTATGCAGAAGCTTTTCCATTTA 59.398 33.333 0.00 0.00 42.74 1.40
4468 6775 8.931385 TTATGCAGAAGCTTTTCCATTTAATC 57.069 30.769 0.00 0.00 42.74 1.75
4497 6807 7.168219 AGTTTGTCTCACATAAGGAGCATTTA 58.832 34.615 0.00 0.00 32.38 1.40
4516 6826 7.854534 GCATTTAGCAATGAAAGTTGAAGTTT 58.145 30.769 0.00 0.00 42.35 2.66
4558 6868 9.842775 TCATTAATAAAGCTCTTCTCATGATGT 57.157 29.630 0.00 0.00 0.00 3.06
4569 6879 3.613030 TCTCATGATGTGTTGATGGTGG 58.387 45.455 0.00 0.00 0.00 4.61
4642 6952 5.726980 ATTGATGCTTAAAGTTTGGCTGA 57.273 34.783 13.72 0.00 0.00 4.26
4654 6964 9.691362 TTAAAGTTTGGCTGATTTTCAGTATTC 57.309 29.630 6.40 0.00 45.94 1.75
4680 6997 5.468746 GGTGTGATTGTTGTAGCAAGTCTAA 59.531 40.000 0.00 0.00 0.00 2.10
4718 7035 8.840321 ACTTTCTTCCATCCATATTATTTGTCG 58.160 33.333 0.00 0.00 0.00 4.35
4721 7038 6.650807 TCTTCCATCCATATTATTTGTCGCTC 59.349 38.462 0.00 0.00 0.00 5.03
4722 7039 4.929211 TCCATCCATATTATTTGTCGCTCG 59.071 41.667 0.00 0.00 0.00 5.03
4727 7044 7.402811 TCCATATTATTTGTCGCTCGTTTAG 57.597 36.000 0.00 0.00 0.00 1.85
4731 7048 8.748582 CATATTATTTGTCGCTCGTTTAGTACA 58.251 33.333 0.00 0.00 0.00 2.90
4738 7055 5.976534 TGTCGCTCGTTTAGTACAAAGTTAA 59.023 36.000 0.00 0.00 0.00 2.01
4769 7108 7.463780 GCTTTATACTAAACCAGCGAGTTGTAC 60.464 40.741 0.00 0.00 0.00 2.90
4784 7123 8.137437 AGCGAGTTGTACTAACTTTGTACTAAA 58.863 33.333 12.73 0.67 40.44 1.85
4805 7144 7.822822 ACTAAACCAGTGACAAGTAATATGGAC 59.177 37.037 0.00 0.00 35.62 4.02
4807 7146 4.119862 CCAGTGACAAGTAATATGGACCG 58.880 47.826 0.00 0.00 0.00 4.79
4828 7167 3.542648 GGAGGGAGTAGTAAATTGCACC 58.457 50.000 0.00 0.00 0.00 5.01
4829 7168 3.195661 GAGGGAGTAGTAAATTGCACCG 58.804 50.000 0.00 0.00 0.00 4.94
4830 7169 2.835764 AGGGAGTAGTAAATTGCACCGA 59.164 45.455 0.00 0.00 0.00 4.69
4831 7170 2.934553 GGGAGTAGTAAATTGCACCGAC 59.065 50.000 0.00 0.00 0.00 4.79
4860 7199 2.238646 TGTGAAGTTGTCCAGACCACTT 59.761 45.455 15.00 15.00 46.05 3.16
4926 7265 7.696992 TTTTGTGTATCAAGTTATTCTCCCC 57.303 36.000 0.00 0.00 37.35 4.81
4953 7292 2.108250 ACAGAATAGCCCACACCAAACT 59.892 45.455 0.00 0.00 0.00 2.66
4954 7293 3.157087 CAGAATAGCCCACACCAAACTT 58.843 45.455 0.00 0.00 0.00 2.66
4955 7294 3.573967 CAGAATAGCCCACACCAAACTTT 59.426 43.478 0.00 0.00 0.00 2.66
4956 7295 3.573967 AGAATAGCCCACACCAAACTTTG 59.426 43.478 0.00 0.00 0.00 2.77
4957 7296 1.036707 TAGCCCACACCAAACTTTGC 58.963 50.000 0.00 0.00 0.00 3.68
4958 7297 0.975040 AGCCCACACCAAACTTTGCA 60.975 50.000 0.00 0.00 0.00 4.08
4959 7298 0.107945 GCCCACACCAAACTTTGCAA 60.108 50.000 0.00 0.00 0.00 4.08
4960 7299 1.677217 GCCCACACCAAACTTTGCAAA 60.677 47.619 12.14 12.14 0.00 3.68
4961 7300 2.006169 CCCACACCAAACTTTGCAAAC 58.994 47.619 8.05 0.00 0.00 2.93
4962 7301 1.658095 CCACACCAAACTTTGCAAACG 59.342 47.619 8.05 7.39 0.00 3.60
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 56 3.130693 GGTAGTAGTGGCGAGTCATCTTT 59.869 47.826 0.00 0.00 0.00 2.52
75 76 1.687996 CCCTTCAACAGGTTTGTGGGT 60.688 52.381 0.00 0.00 42.02 4.51
100 101 3.578272 GTCGTGCGTTTGTGGCCA 61.578 61.111 0.00 0.00 0.00 5.36
118 119 4.894114 GGTTCTAGACTATACAGAAGGCCA 59.106 45.833 5.01 0.00 0.00 5.36
120 121 5.828859 TGAGGTTCTAGACTATACAGAAGGC 59.171 44.000 0.00 0.00 0.00 4.35
194 195 2.170607 GCAAGAGAAGGTGGGTATAGCA 59.829 50.000 4.02 0.00 0.00 3.49
238 239 2.155155 CACTTCGTTTGCCTTAGACGAC 59.845 50.000 0.00 0.00 44.41 4.34
243 244 2.223377 GTGTCCACTTCGTTTGCCTTAG 59.777 50.000 0.00 0.00 0.00 2.18
267 268 3.687321 GATGAAGGCAGCGCTGGGA 62.687 63.158 36.47 0.00 0.00 4.37
276 277 1.877680 CGACACTGGTTGATGAAGGCA 60.878 52.381 0.00 0.00 0.00 4.75
287 288 1.485066 AGACAAAACCTCGACACTGGT 59.515 47.619 0.00 0.00 38.35 4.00
290 291 2.483188 GGTCAGACAAAACCTCGACACT 60.483 50.000 2.17 0.00 32.54 3.55
351 352 2.111043 CTATGTCCGCCCGCCAAT 59.889 61.111 0.00 0.00 0.00 3.16
380 381 0.476808 TCCCTTCCCAAAGCCTACCA 60.477 55.000 0.00 0.00 0.00 3.25
383 384 0.120377 TCCTCCCTTCCCAAAGCCTA 59.880 55.000 0.00 0.00 0.00 3.93
384 385 0.776080 TTCCTCCCTTCCCAAAGCCT 60.776 55.000 0.00 0.00 0.00 4.58
392 393 2.235155 GAGTGACTTCTTCCTCCCTTCC 59.765 54.545 0.00 0.00 0.00 3.46
393 669 2.235155 GGAGTGACTTCTTCCTCCCTTC 59.765 54.545 0.00 0.00 36.43 3.46
451 727 2.409371 GCGTACGAAAACTGAACCGAAG 60.409 50.000 21.65 0.00 0.00 3.79
455 731 1.219646 TGGCGTACGAAAACTGAACC 58.780 50.000 21.65 7.66 0.00 3.62
466 742 1.083489 ATGTGTGGAAATGGCGTACG 58.917 50.000 11.84 11.84 0.00 3.67
478 754 5.520376 ACTCTTGAAAAGGAAATGTGTGG 57.480 39.130 0.00 0.00 46.24 4.17
531 807 5.352284 AGAAAGCTGGTTATCATGTACTCG 58.648 41.667 0.00 0.00 0.00 4.18
557 833 4.151867 GTGGTCCTTACACGAGTTTGATTC 59.848 45.833 0.00 0.00 0.00 2.52
580 856 3.124636 GTGCAAACCATGTCGTAACTAGG 59.875 47.826 0.00 0.00 0.00 3.02
584 860 1.262151 ACGTGCAAACCATGTCGTAAC 59.738 47.619 0.00 0.00 39.46 2.50
605 881 7.482654 TCACATGTATACTGTAGTACCGTAC 57.517 40.000 6.71 0.00 32.72 3.67
606 882 7.986889 TCTTCACATGTATACTGTAGTACCGTA 59.013 37.037 0.00 6.99 32.72 4.02
607 883 6.825213 TCTTCACATGTATACTGTAGTACCGT 59.175 38.462 0.00 2.76 32.72 4.83
608 884 7.255491 TCTTCACATGTATACTGTAGTACCG 57.745 40.000 0.00 0.00 32.72 4.02
609 885 8.464404 TGTTCTTCACATGTATACTGTAGTACC 58.536 37.037 0.00 0.00 32.72 3.34
610 886 9.850628 TTGTTCTTCACATGTATACTGTAGTAC 57.149 33.333 0.00 3.04 34.43 2.73
612 888 9.772973 TTTTGTTCTTCACATGTATACTGTAGT 57.227 29.630 0.00 0.00 34.43 2.73
614 890 9.214957 CCTTTTGTTCTTCACATGTATACTGTA 57.785 33.333 0.00 0.00 34.43 2.74
615 891 7.936847 TCCTTTTGTTCTTCACATGTATACTGT 59.063 33.333 0.00 3.55 34.43 3.55
616 892 8.322906 TCCTTTTGTTCTTCACATGTATACTG 57.677 34.615 0.00 2.93 34.43 2.74
617 893 8.918202 TTCCTTTTGTTCTTCACATGTATACT 57.082 30.769 0.00 0.00 34.43 2.12
618 894 9.959749 TTTTCCTTTTGTTCTTCACATGTATAC 57.040 29.630 0.00 0.00 34.43 1.47
619 895 9.959749 GTTTTCCTTTTGTTCTTCACATGTATA 57.040 29.630 0.00 0.00 34.43 1.47
661 937 9.606631 TGCAATAACTTATGTTTTCCTTTTGTT 57.393 25.926 0.00 0.00 37.59 2.83
665 941 7.731054 TGGTGCAATAACTTATGTTTTCCTTT 58.269 30.769 0.00 0.00 37.59 3.11
667 943 6.909550 TGGTGCAATAACTTATGTTTTCCT 57.090 33.333 0.00 0.00 37.59 3.36
668 944 7.275560 GTGATGGTGCAATAACTTATGTTTTCC 59.724 37.037 0.00 0.00 37.59 3.13
669 945 8.028938 AGTGATGGTGCAATAACTTATGTTTTC 58.971 33.333 0.00 0.00 37.59 2.29
670 946 7.895759 AGTGATGGTGCAATAACTTATGTTTT 58.104 30.769 0.00 0.00 37.59 2.43
671 947 7.176515 TGAGTGATGGTGCAATAACTTATGTTT 59.823 33.333 0.00 0.00 37.59 2.83
672 948 6.658816 TGAGTGATGGTGCAATAACTTATGTT 59.341 34.615 0.00 0.00 39.98 2.71
673 949 6.094048 GTGAGTGATGGTGCAATAACTTATGT 59.906 38.462 0.00 0.00 0.00 2.29
674 950 6.317140 AGTGAGTGATGGTGCAATAACTTATG 59.683 38.462 0.00 0.00 22.92 1.90
675 951 6.418101 AGTGAGTGATGGTGCAATAACTTAT 58.582 36.000 0.00 0.00 22.92 1.73
676 952 5.804639 AGTGAGTGATGGTGCAATAACTTA 58.195 37.500 0.00 0.00 22.92 2.24
677 953 4.655963 AGTGAGTGATGGTGCAATAACTT 58.344 39.130 0.00 0.00 22.92 2.66
678 954 4.292186 AGTGAGTGATGGTGCAATAACT 57.708 40.909 0.00 0.00 0.00 2.24
679 955 5.376854 AAAGTGAGTGATGGTGCAATAAC 57.623 39.130 0.00 0.00 0.00 1.89
680 956 5.771469 CAAAAGTGAGTGATGGTGCAATAA 58.229 37.500 0.00 0.00 0.00 1.40
681 957 4.321156 GCAAAAGTGAGTGATGGTGCAATA 60.321 41.667 0.00 0.00 0.00 1.90
682 958 3.553508 GCAAAAGTGAGTGATGGTGCAAT 60.554 43.478 0.00 0.00 0.00 3.56
683 959 2.223782 GCAAAAGTGAGTGATGGTGCAA 60.224 45.455 0.00 0.00 0.00 4.08
704 980 8.645487 CGTGATCAGATAATATCATCACAACAG 58.355 37.037 22.50 10.55 42.31 3.16
720 996 4.561530 GCCATACCATACACGTGATCAGAT 60.562 45.833 25.01 0.00 0.00 2.90
758 1034 1.223487 GTTAGGGGGAGCGATTGCA 59.777 57.895 7.90 0.00 46.23 4.08
862 1138 3.767673 TGCCTTTCTCGGACTAGTATTGT 59.232 43.478 0.00 0.00 0.00 2.71
871 1147 2.396590 TGGTTATGCCTTTCTCGGAC 57.603 50.000 0.00 0.00 38.35 4.79
897 1173 7.283127 ACATTGGATGCACTTAAATACTACCAG 59.717 37.037 0.00 0.00 0.00 4.00
911 1187 0.314618 TGCACACACATTGGATGCAC 59.685 50.000 0.00 0.00 37.40 4.57
931 1207 4.563786 GCCCTGAATCACTTACCCTATAGC 60.564 50.000 0.00 0.00 0.00 2.97
945 1221 1.340017 TGTGCACTTAGGCCCTGAATC 60.340 52.381 19.41 0.00 0.00 2.52
950 1226 1.207488 TGGATGTGCACTTAGGCCCT 61.207 55.000 19.41 0.00 0.00 5.19
957 1233 3.313526 GCGAAGATATTGGATGTGCACTT 59.686 43.478 19.41 12.28 0.00 3.16
966 1242 4.443457 CCAGGAAGAAGCGAAGATATTGGA 60.443 45.833 0.00 0.00 0.00 3.53
987 1263 0.034767 CCTCCATTGCAGAGCTTCCA 60.035 55.000 0.00 0.00 0.00 3.53
990 1266 0.914644 TAGCCTCCATTGCAGAGCTT 59.085 50.000 0.00 0.00 0.00 3.74
1007 1283 1.448985 CACCACCGGTCCAACATTAG 58.551 55.000 2.59 0.00 31.02 1.73
1043 1319 3.275617 ACGCAGCCCAATTATAGACAA 57.724 42.857 0.00 0.00 0.00 3.18
1068 1344 2.906389 AGCTAGAACAACTGACCATCCA 59.094 45.455 0.00 0.00 0.00 3.41
1085 1361 8.951787 TGTCTAGAAGTTAAAAACAACAGCTA 57.048 30.769 0.00 0.00 0.00 3.32
1089 1365 9.832445 AGATCTGTCTAGAAGTTAAAAACAACA 57.168 29.630 0.00 0.00 36.32 3.33
1101 1377 4.734398 AACAGCCAGATCTGTCTAGAAG 57.266 45.455 21.11 4.73 45.77 2.85
1127 1403 5.904362 ATAAGTTTCATCCTCTGCCAAAC 57.096 39.130 0.00 0.00 0.00 2.93
1191 1472 2.230508 TGTAGAGATCGGGTGTGTTCAC 59.769 50.000 0.00 0.00 43.19 3.18
1213 1494 4.395854 TGTTGACTATGTGCAGCCTAATTG 59.604 41.667 0.00 0.00 0.00 2.32
1228 1509 4.919168 GTGCGTGTATGTTAGTGTTGACTA 59.081 41.667 0.00 0.00 33.21 2.59
1237 1518 6.015504 GTGATTCTTTGTGCGTGTATGTTAG 58.984 40.000 0.00 0.00 0.00 2.34
1246 1527 0.235665 CAGCGTGATTCTTTGTGCGT 59.764 50.000 0.00 0.00 0.00 5.24
1248 1529 0.730494 GCCAGCGTGATTCTTTGTGC 60.730 55.000 0.00 0.00 0.00 4.57
1251 1532 2.420628 TTTGCCAGCGTGATTCTTTG 57.579 45.000 0.00 0.00 0.00 2.77
1262 1543 1.938625 TGACTTTGCTTTTTGCCAGC 58.061 45.000 0.00 0.00 42.00 4.85
1264 1545 2.211806 GCATGACTTTGCTTTTTGCCA 58.788 42.857 0.00 0.00 42.00 4.92
1273 1554 4.612932 TTTTGGTTTTGCATGACTTTGC 57.387 36.364 0.00 0.00 43.07 3.68
1283 1564 5.614449 CGTCAAGGCATAATTTTGGTTTTGC 60.614 40.000 0.00 0.00 35.96 3.68
1287 1568 3.829601 TCCGTCAAGGCATAATTTTGGTT 59.170 39.130 0.00 0.00 40.77 3.67
1294 1575 5.652014 TCTTTTTCATCCGTCAAGGCATAAT 59.348 36.000 0.00 0.00 40.77 1.28
1295 1576 5.007034 TCTTTTTCATCCGTCAAGGCATAA 58.993 37.500 0.00 0.00 40.77 1.90
1342 1623 4.766007 CATGATCGGAATTTAAGTGCTCG 58.234 43.478 0.00 0.00 0.00 5.03
1442 1723 2.434359 GTGTGACCAGTAGCGGCC 60.434 66.667 0.00 0.00 0.00 6.13
1458 1739 1.003118 TCCATTAAAGCGGCAGTCTGT 59.997 47.619 1.45 0.00 0.00 3.41
1482 1763 8.729756 CATAACTGACATGACAAAGAATACCAA 58.270 33.333 0.00 0.00 0.00 3.67
1493 1774 5.118286 CCATAGTGCATAACTGACATGACA 58.882 41.667 0.00 0.00 40.26 3.58
1494 1775 5.118990 ACCATAGTGCATAACTGACATGAC 58.881 41.667 0.00 0.00 40.26 3.06
1583 1864 6.292328 GCGTACCGTACCATCTATTTTAAACC 60.292 42.308 3.04 0.00 0.00 3.27
1591 1872 2.157738 GGAGCGTACCGTACCATCTAT 58.842 52.381 3.04 0.00 0.00 1.98
1613 1894 1.661821 GTGACTATAGCGGGCGCAG 60.662 63.158 10.83 3.20 44.88 5.18
1650 1931 2.265367 TGGCCAGGTTATCTGAGACAA 58.735 47.619 0.00 0.00 46.18 3.18
1652 1933 2.237392 AGTTGGCCAGGTTATCTGAGAC 59.763 50.000 5.11 0.00 46.18 3.36
1662 1943 1.542547 CGAACACTAAGTTGGCCAGGT 60.543 52.381 5.11 0.00 41.51 4.00
1664 1945 1.878953 ACGAACACTAAGTTGGCCAG 58.121 50.000 5.11 0.00 41.51 4.85
1668 1949 6.645415 AGAAGACATTACGAACACTAAGTTGG 59.355 38.462 0.00 0.00 41.51 3.77
1681 1966 3.121279 CACACCGACAAGAAGACATTACG 59.879 47.826 0.00 0.00 0.00 3.18
1690 1975 3.635373 AGAGAAGTACACACCGACAAGAA 59.365 43.478 0.00 0.00 0.00 2.52
1706 1991 6.201806 CCCTAATGACGAATAAGCAAGAGAAG 59.798 42.308 0.00 0.00 0.00 2.85
1714 1999 4.985409 CAGTCTCCCTAATGACGAATAAGC 59.015 45.833 0.00 0.00 38.16 3.09
1715 2000 5.069251 ACCAGTCTCCCTAATGACGAATAAG 59.931 44.000 0.00 0.00 38.16 1.73
1718 2003 3.375699 ACCAGTCTCCCTAATGACGAAT 58.624 45.455 0.00 0.00 38.16 3.34
1720 2005 2.376109 GACCAGTCTCCCTAATGACGA 58.624 52.381 0.00 0.00 38.16 4.20
1721 2006 1.065701 CGACCAGTCTCCCTAATGACG 59.934 57.143 0.00 0.00 38.16 4.35
1722 2007 2.100989 ACGACCAGTCTCCCTAATGAC 58.899 52.381 0.00 0.00 0.00 3.06
1724 2009 1.825474 ACACGACCAGTCTCCCTAATG 59.175 52.381 0.00 0.00 0.00 1.90
1725 2010 1.825474 CACACGACCAGTCTCCCTAAT 59.175 52.381 0.00 0.00 0.00 1.73
1726 2011 1.202964 TCACACGACCAGTCTCCCTAA 60.203 52.381 0.00 0.00 0.00 2.69
1727 2012 0.402887 TCACACGACCAGTCTCCCTA 59.597 55.000 0.00 0.00 0.00 3.53
1728 2013 0.469331 TTCACACGACCAGTCTCCCT 60.469 55.000 0.00 0.00 0.00 4.20
1729 2014 0.319641 GTTCACACGACCAGTCTCCC 60.320 60.000 0.00 0.00 0.00 4.30
1759 2044 5.528320 TGCAGTGTATGATTGATGTACCATG 59.472 40.000 0.00 0.00 0.00 3.66
1818 2103 3.278574 GCCCACATGTTAGCATAGTCAA 58.721 45.455 11.17 0.00 33.30 3.18
1829 2114 1.477553 CTGCAATAGGCCCACATGTT 58.522 50.000 0.00 0.00 43.89 2.71
1842 2127 9.146586 TGGAATATAATTTTCTTAGCCTGCAAT 57.853 29.630 0.00 0.00 0.00 3.56
1865 2150 6.515696 CGAGAGAGATATGCAGTTTGTATGGA 60.516 42.308 0.00 0.00 0.00 3.41
1875 2160 6.292061 GCTAAAACAACGAGAGAGATATGCAG 60.292 42.308 0.00 0.00 0.00 4.41
1876 2161 5.520288 GCTAAAACAACGAGAGAGATATGCA 59.480 40.000 0.00 0.00 0.00 3.96
1881 2166 4.810191 AGGCTAAAACAACGAGAGAGAT 57.190 40.909 0.00 0.00 0.00 2.75
1883 2168 3.365220 CGAAGGCTAAAACAACGAGAGAG 59.635 47.826 0.00 0.00 0.00 3.20
1884 2169 3.314553 CGAAGGCTAAAACAACGAGAGA 58.685 45.455 0.00 0.00 0.00 3.10
1924 2209 2.157279 CGACCGACTATGTATCCGAGTC 59.843 54.545 0.00 0.00 36.95 3.36
1925 2210 2.141517 CGACCGACTATGTATCCGAGT 58.858 52.381 0.00 0.00 0.00 4.18
1926 2211 2.410939 TCGACCGACTATGTATCCGAG 58.589 52.381 0.00 0.00 0.00 4.63
1927 2212 2.531522 TCGACCGACTATGTATCCGA 57.468 50.000 0.00 0.00 0.00 4.55
1930 2215 6.093771 ACCTGATTATCGACCGACTATGTATC 59.906 42.308 0.00 0.00 0.00 2.24
1931 2216 5.944599 ACCTGATTATCGACCGACTATGTAT 59.055 40.000 0.00 0.00 0.00 2.29
1932 2217 5.311265 ACCTGATTATCGACCGACTATGTA 58.689 41.667 0.00 0.00 0.00 2.29
1933 2218 4.142790 ACCTGATTATCGACCGACTATGT 58.857 43.478 0.00 0.00 0.00 2.29
1935 2220 6.889301 TTAACCTGATTATCGACCGACTAT 57.111 37.500 0.00 0.00 0.00 2.12
1969 2450 7.415318 GCTGGCGAGCTAGTAATAGATTATGTA 60.415 40.741 14.13 0.00 42.52 2.29
1971 2452 5.746245 GCTGGCGAGCTAGTAATAGATTATG 59.254 44.000 14.13 0.00 42.52 1.90
1975 2456 2.494073 GGCTGGCGAGCTAGTAATAGAT 59.506 50.000 20.62 0.00 45.44 1.98
1988 2469 0.825425 TCAACCAATTTGGCTGGCGA 60.825 50.000 15.49 2.50 42.67 5.54
1995 2476 6.034898 GCACGAGAATTATTCAACCAATTTGG 59.965 38.462 14.02 14.02 45.02 3.28
2013 2494 2.358369 AGAGACGGTCGCACGAGA 60.358 61.111 14.27 0.00 37.61 4.04
2014 2495 2.202362 CAGAGACGGTCGCACGAG 60.202 66.667 14.27 0.00 37.61 4.18
2031 2512 8.560374 GCATATAGACTTTTGGTTCAACTATCC 58.440 37.037 0.00 0.00 0.00 2.59
2034 2515 7.769044 GGAGCATATAGACTTTTGGTTCAACTA 59.231 37.037 0.00 0.00 0.00 2.24
2040 2521 5.440610 CCAGGAGCATATAGACTTTTGGTT 58.559 41.667 0.00 0.00 0.00 3.67
2058 2539 2.359850 GCGTGTGAATGCCCAGGA 60.360 61.111 0.00 0.00 0.00 3.86
2063 2544 1.438651 TACTTCTGCGTGTGAATGCC 58.561 50.000 0.00 0.00 0.00 4.40
2074 2555 3.629398 CCTTCCATGGTCATTACTTCTGC 59.371 47.826 12.58 0.00 0.00 4.26
2087 2568 1.745087 CAACGGTCAATCCTTCCATGG 59.255 52.381 4.97 4.97 0.00 3.66
2088 2569 2.420022 GTCAACGGTCAATCCTTCCATG 59.580 50.000 0.00 0.00 0.00 3.66
2090 2571 1.606994 CGTCAACGGTCAATCCTTCCA 60.607 52.381 0.00 0.00 35.37 3.53
2091 2572 1.076332 CGTCAACGGTCAATCCTTCC 58.924 55.000 0.00 0.00 35.37 3.46
2094 2575 0.320421 CCACGTCAACGGTCAATCCT 60.320 55.000 7.53 0.00 44.95 3.24
2095 2576 0.601841 ACCACGTCAACGGTCAATCC 60.602 55.000 7.53 0.00 44.95 3.01
2096 2577 1.990563 CTACCACGTCAACGGTCAATC 59.009 52.381 7.53 0.00 44.95 2.67
2097 2578 1.938016 GCTACCACGTCAACGGTCAAT 60.938 52.381 7.53 0.00 44.95 2.57
2098 2579 0.598158 GCTACCACGTCAACGGTCAA 60.598 55.000 7.53 0.00 44.95 3.18
2100 2581 0.319297 AAGCTACCACGTCAACGGTC 60.319 55.000 7.53 0.00 44.95 4.79
2101 2582 0.105408 AAAGCTACCACGTCAACGGT 59.895 50.000 7.53 0.57 44.95 4.83
2102 2583 0.511221 CAAAGCTACCACGTCAACGG 59.489 55.000 7.53 0.00 44.95 4.44
2103 2584 1.493772 TCAAAGCTACCACGTCAACG 58.506 50.000 0.12 0.12 46.33 4.10
2104 2585 3.128349 TCTTCAAAGCTACCACGTCAAC 58.872 45.455 0.00 0.00 0.00 3.18
2106 2587 3.678056 ATCTTCAAAGCTACCACGTCA 57.322 42.857 0.00 0.00 0.00 4.35
2156 2638 4.082571 GCAGGAGTGATTGCATGTTTAACT 60.083 41.667 0.00 0.00 0.00 2.24
2173 2655 2.427506 GAGTTTGTACCCTTGCAGGAG 58.572 52.381 0.00 0.00 37.67 3.69
2177 2659 2.092103 AGTTGGAGTTTGTACCCTTGCA 60.092 45.455 0.00 0.00 0.00 4.08
2215 2716 3.577848 CCTCCCATGTTGTCATCCAAAAA 59.422 43.478 0.00 0.00 34.07 1.94
2236 2737 1.273048 TGACATTTTGGTCAGCATGCC 59.727 47.619 15.66 0.00 42.56 4.40
2244 2745 8.696410 TCAAAGTACTTTTTGACATTTTGGTC 57.304 30.769 18.25 0.00 40.95 4.02
2255 2756 8.971321 CCACAAGAATCATCAAAGTACTTTTTG 58.029 33.333 18.25 17.75 38.97 2.44
2294 2795 5.888161 AGAGTTTAATACAAATGGCTCCCAG 59.112 40.000 0.00 0.00 36.75 4.45
2299 2800 9.255029 ACCATTAAGAGTTTAATACAAATGGCT 57.745 29.630 9.95 0.00 43.75 4.75
2371 2874 3.004734 CCAAAAGGGTTAGCAACTCACAG 59.995 47.826 2.46 0.00 33.06 3.66
2387 2890 2.472816 GTCACCATGCAACACCAAAAG 58.527 47.619 0.00 0.00 0.00 2.27
2420 2923 6.822667 ACAAGTGAATGAACAATCTATGCA 57.177 33.333 0.00 0.00 0.00 3.96
2464 2967 9.862371 AAGAACATGATACTGTACAACTAGAAG 57.138 33.333 0.00 0.00 0.00 2.85
2529 3035 2.352225 CGGAGACAGGAGACTTCACAAG 60.352 54.545 0.00 0.00 40.21 3.16
2579 3085 2.014010 AGACACCCCATGCAACAAAT 57.986 45.000 0.00 0.00 0.00 2.32
2586 3092 0.962356 CTCCACAAGACACCCCATGC 60.962 60.000 0.00 0.00 0.00 4.06
2624 3130 4.032960 TGCTTAGTCATGGGTTGTTCAT 57.967 40.909 0.00 0.00 0.00 2.57
2678 3184 7.275888 ACTTGTTTTGTGCATCATAAAGAGA 57.724 32.000 0.00 0.00 0.00 3.10
2680 3186 7.715657 AGAACTTGTTTTGTGCATCATAAAGA 58.284 30.769 0.00 0.00 0.00 2.52
2685 3191 5.904941 TCAAGAACTTGTTTTGTGCATCAT 58.095 33.333 13.15 0.00 41.16 2.45
2691 3197 8.116136 GCCTTTAAATCAAGAACTTGTTTTGTG 58.884 33.333 22.71 15.64 40.56 3.33
2715 3221 9.598517 TCAATATTTTCTCATTTACCAATTGCC 57.401 29.630 0.00 0.00 0.00 4.52
2807 3334 8.940397 ATTCTTTATGGAAGTATTACCATGGG 57.060 34.615 18.09 0.00 45.08 4.00
2822 3350 9.814899 TTGTTGCCATTGTATTATTCTTTATGG 57.185 29.630 0.00 0.00 35.34 2.74
2846 3374 7.224362 TCCACTTTTGAATTTACAGTGCAATTG 59.776 33.333 0.00 0.00 0.00 2.32
2853 3381 4.280929 GGGCTCCACTTTTGAATTTACAGT 59.719 41.667 0.00 0.00 0.00 3.55
2856 3384 4.864704 TGGGCTCCACTTTTGAATTTAC 57.135 40.909 0.00 0.00 0.00 2.01
2913 3441 8.024285 GGAAATTACCAACATCGACAACATTAA 58.976 33.333 0.00 0.00 0.00 1.40
2923 3451 7.067008 ACCATAGAAAGGAAATTACCAACATCG 59.933 37.037 0.00 0.00 0.00 3.84
2928 3456 8.581578 GTTTGACCATAGAAAGGAAATTACCAA 58.418 33.333 0.00 0.00 0.00 3.67
2973 3501 8.506437 CCGTTAATCATACGTGTAGAATACCTA 58.494 37.037 0.00 0.00 37.16 3.08
2976 5230 7.362662 TCCCGTTAATCATACGTGTAGAATAC 58.637 38.462 0.00 0.00 37.88 1.89
2987 5241 6.854496 TGCTTATGTTCCCGTTAATCATAC 57.146 37.500 0.00 0.00 0.00 2.39
2990 5244 6.767524 ATTTGCTTATGTTCCCGTTAATCA 57.232 33.333 0.00 0.00 0.00 2.57
2997 5251 7.201513 CCAAACATTTATTTGCTTATGTTCCCG 60.202 37.037 0.00 0.00 39.55 5.14
3014 5268 9.423061 GCAATATAGTTGAGAAACCAAACATTT 57.577 29.630 0.00 0.00 0.00 2.32
3016 5270 7.397192 AGGCAATATAGTTGAGAAACCAAACAT 59.603 33.333 0.00 0.00 0.00 2.71
3018 5272 7.029563 CAGGCAATATAGTTGAGAAACCAAAC 58.970 38.462 0.00 0.00 0.00 2.93
3033 5287 7.226441 AGTGTGCTTAATGATCAGGCAATATA 58.774 34.615 14.07 3.28 34.65 0.86
3071 5325 3.467803 AGTAACAAGAATATGAGGGCGC 58.532 45.455 0.00 0.00 0.00 6.53
3116 5370 3.199727 TGGAAGCAACATATACCTCAGCA 59.800 43.478 0.00 0.00 0.00 4.41
3203 5457 3.570125 AGAACCAGGAGTTGCTTTTTAGC 59.430 43.478 0.00 0.00 39.40 3.09
3206 5460 4.023291 TGAAGAACCAGGAGTTGCTTTTT 58.977 39.130 0.00 0.00 39.40 1.94
3213 5467 3.136443 TGTGACATGAAGAACCAGGAGTT 59.864 43.478 0.00 0.00 43.07 3.01
3218 5472 6.032094 GCATTATTGTGACATGAAGAACCAG 58.968 40.000 0.00 0.00 0.00 4.00
3232 5486 8.671921 AGTTAGTGATCTTCAAGCATTATTGTG 58.328 33.333 0.00 0.00 0.00 3.33
3234 5488 8.886719 TGAGTTAGTGATCTTCAAGCATTATTG 58.113 33.333 0.00 0.00 0.00 1.90
3240 5494 5.928839 GTCTTGAGTTAGTGATCTTCAAGCA 59.071 40.000 7.47 0.00 34.75 3.91
3257 5511 5.788450 AGTGTCATAACTTCTGGTCTTGAG 58.212 41.667 0.00 0.00 0.00 3.02
3268 5522 8.784043 GGTTCAACATAAGAAGTGTCATAACTT 58.216 33.333 0.00 0.00 43.08 2.66
3274 5528 8.154203 TGATTAGGTTCAACATAAGAAGTGTCA 58.846 33.333 0.63 0.00 27.34 3.58
3279 5533 9.177608 TGGATTGATTAGGTTCAACATAAGAAG 57.822 33.333 0.63 0.00 38.37 2.85
3288 5542 9.927668 GAAAAATCTTGGATTGATTAGGTTCAA 57.072 29.630 0.00 0.00 39.77 2.69
3363 5619 8.624670 ACCATAGTAAGGATATCTGATGACCTA 58.375 37.037 14.53 3.88 0.00 3.08
3413 5669 6.006449 CCTAAGCCATAATAGCCAGAAATGT 58.994 40.000 0.00 0.00 0.00 2.71
3494 5750 7.148983 CGGTACAAAAACAATGAAGCAATGTAG 60.149 37.037 0.00 0.00 26.56 2.74
3498 5754 5.837437 TCGGTACAAAAACAATGAAGCAAT 58.163 33.333 0.00 0.00 0.00 3.56
3562 5829 2.351726 GCCAACTTCACTTAGCATACCG 59.648 50.000 0.00 0.00 0.00 4.02
3569 5836 5.692204 CGTATATGAGGCCAACTTCACTTAG 59.308 44.000 5.01 0.00 0.00 2.18
3653 5920 9.730420 GTTAAGCAAAACTCTCATTGAAGTAAA 57.270 29.630 0.00 0.00 0.00 2.01
3655 5922 8.445275 TGTTAAGCAAAACTCTCATTGAAGTA 57.555 30.769 3.29 0.00 0.00 2.24
3701 5970 6.507023 CAATATTTATTGGAGGCCTGACAAC 58.493 40.000 12.00 0.00 39.42 3.32
3702 5971 5.068987 GCAATATTTATTGGAGGCCTGACAA 59.931 40.000 12.00 16.52 42.46 3.18
3723 5992 4.630644 TTTATTGGGCATTTGAAGGCAA 57.369 36.364 2.69 0.00 37.46 4.52
3810 6079 8.925700 CCTTTGGTCAATAATTGTAAAGAAAGC 58.074 33.333 0.00 0.00 33.46 3.51
3849 6118 6.585695 ACGAAGAGGTGTCTTGTTAGATAA 57.414 37.500 0.00 0.00 43.50 1.75
3850 6119 6.585695 AACGAAGAGGTGTCTTGTTAGATA 57.414 37.500 0.00 0.00 43.50 1.98
3853 6122 5.047847 TGAAACGAAGAGGTGTCTTGTTAG 58.952 41.667 0.00 0.00 43.50 2.34
3855 6124 3.869065 TGAAACGAAGAGGTGTCTTGTT 58.131 40.909 0.00 0.00 43.50 2.83
3886 6155 2.233271 ACAAGTGTGGAAATCCTGCAG 58.767 47.619 6.78 6.78 36.82 4.41
3921 6190 2.907042 ACAAGACCACCTTCCTCCTAAG 59.093 50.000 0.00 0.00 31.42 2.18
3941 6210 1.994779 CATGCGGATTTTGCCTTTGAC 59.005 47.619 0.00 0.00 0.00 3.18
3954 6223 4.058124 GCTTGTGAGTAATATCATGCGGA 58.942 43.478 0.00 0.00 0.00 5.54
3966 6235 9.409918 ACATATACTCTAGAAAGCTTGTGAGTA 57.590 33.333 21.93 21.93 40.02 2.59
3967 6236 8.299990 ACATATACTCTAGAAAGCTTGTGAGT 57.700 34.615 20.03 20.03 38.21 3.41
3994 6263 5.022282 TCACACATTCAGAAGTCACTTGA 57.978 39.130 0.00 0.00 0.00 3.02
3995 6264 4.813161 ACTCACACATTCAGAAGTCACTTG 59.187 41.667 0.00 0.00 0.00 3.16
3997 6266 4.679373 ACTCACACATTCAGAAGTCACT 57.321 40.909 0.00 0.00 0.00 3.41
3998 6267 4.572389 ACAACTCACACATTCAGAAGTCAC 59.428 41.667 0.00 0.00 0.00 3.67
4007 6277 3.548818 GGAAGCACACAACTCACACATTC 60.549 47.826 0.00 0.00 0.00 2.67
4031 6301 2.292267 GCTGGTGGGAAGTATCATGTG 58.708 52.381 0.00 0.00 0.00 3.21
4032 6302 1.134401 CGCTGGTGGGAAGTATCATGT 60.134 52.381 0.00 0.00 0.00 3.21
4035 6305 1.855295 TACGCTGGTGGGAAGTATCA 58.145 50.000 0.00 0.00 0.00 2.15
4048 6323 7.059602 CGTCACACAAATAGTAGATATACGCTG 59.940 40.741 0.00 0.00 0.00 5.18
4051 6326 8.679385 CAACGTCACACAAATAGTAGATATACG 58.321 37.037 0.00 0.00 0.00 3.06
4074 6349 7.534239 GGAAACGATAGAAAACATGAGAACAAC 59.466 37.037 0.00 0.00 41.38 3.32
4095 6370 4.142249 CCCCAACTTTATTGATCGGGAAAC 60.142 45.833 0.00 0.00 33.83 2.78
4097 6372 3.010808 ACCCCAACTTTATTGATCGGGAA 59.989 43.478 6.50 0.00 33.83 3.97
4100 6375 2.687935 CCACCCCAACTTTATTGATCGG 59.312 50.000 0.00 0.00 0.00 4.18
4101 6376 3.128589 CACCACCCCAACTTTATTGATCG 59.871 47.826 0.00 0.00 0.00 3.69
4124 6399 2.526873 ACTCAGGTGGGGAACGCT 60.527 61.111 0.00 0.00 43.80 5.07
4126 6401 2.358737 GCACTCAGGTGGGGAACG 60.359 66.667 0.00 0.00 43.18 3.95
4138 6413 3.932710 TCACCGATTGAGTAATTGCACTC 59.067 43.478 1.97 1.97 44.37 3.51
4158 6433 6.791867 AACTATAGTTAGTGGCATGACTCA 57.208 37.500 16.60 0.00 38.69 3.41
4159 6434 9.595823 TTAAAACTATAGTTAGTGGCATGACTC 57.404 33.333 18.31 0.00 38.69 3.36
4160 6435 9.379791 GTTAAAACTATAGTTAGTGGCATGACT 57.620 33.333 18.31 0.00 38.69 3.41
4239 6538 4.095610 CCTCGTCGTATGGAAAAATTTGC 58.904 43.478 0.00 0.00 0.00 3.68
4244 6543 4.178540 GTCATCCTCGTCGTATGGAAAAA 58.821 43.478 8.03 0.00 33.20 1.94
4266 6565 8.335356 TCAACTTTTCGATTTAGACTGAAGTTG 58.665 33.333 15.62 15.62 46.87 3.16
4268 6567 7.711339 ACTCAACTTTTCGATTTAGACTGAAGT 59.289 33.333 0.00 0.00 0.00 3.01
4277 6576 8.385898 ACCAACATACTCAACTTTTCGATTTA 57.614 30.769 0.00 0.00 0.00 1.40
4285 6592 4.644685 AGCACAACCAACATACTCAACTTT 59.355 37.500 0.00 0.00 0.00 2.66
4288 6595 4.154195 CCTAGCACAACCAACATACTCAAC 59.846 45.833 0.00 0.00 0.00 3.18
4307 6614 2.332063 AATGATGTGCGGAACCCTAG 57.668 50.000 0.00 0.00 0.00 3.02
4316 6623 2.670905 TCGTGTCCTTTAATGATGTGCG 59.329 45.455 0.00 0.00 0.00 5.34
4321 6628 4.466370 TCACTCCTCGTGTCCTTTAATGAT 59.534 41.667 0.00 0.00 44.16 2.45
4336 6643 4.070716 CCATAAGATTGGCATCACTCCTC 58.929 47.826 0.00 0.00 0.00 3.71
4337 6644 3.718434 TCCATAAGATTGGCATCACTCCT 59.282 43.478 0.00 0.00 36.66 3.69
4349 6656 5.121380 ACCACTTCAGCATCCATAAGATT 57.879 39.130 0.00 0.00 30.59 2.40
4363 6670 1.717032 ACCTCTGTGCTACCACTTCA 58.283 50.000 0.00 0.00 42.54 3.02
4364 6671 3.090037 TCTACCTCTGTGCTACCACTTC 58.910 50.000 0.00 0.00 42.54 3.01
4413 6720 0.253044 GATAACCTCAGCCTGTGCCA 59.747 55.000 0.00 0.00 38.69 4.92
4416 6723 3.875727 CTGAATGATAACCTCAGCCTGTG 59.124 47.826 0.00 0.00 37.28 3.66
4417 6724 3.118112 CCTGAATGATAACCTCAGCCTGT 60.118 47.826 0.00 0.00 37.28 4.00
4429 6736 6.039717 GCTTCTGCATAAAACCCTGAATGATA 59.960 38.462 0.00 0.00 39.41 2.15
4465 6772 9.442047 CTCCTTATGTGAGACAAACTAAAGATT 57.558 33.333 0.00 0.00 31.26 2.40
4468 6775 6.650807 TGCTCCTTATGTGAGACAAACTAAAG 59.349 38.462 0.00 0.00 31.26 1.85
4482 6789 7.123247 ACTTTCATTGCTAAATGCTCCTTATGT 59.877 33.333 0.00 0.00 42.55 2.29
4536 6846 8.886719 CAACACATCATGAGAAGAGCTTTATTA 58.113 33.333 0.09 0.00 0.00 0.98
4569 6879 4.361420 GGAGAAGCTAACGAATGGTAGAC 58.639 47.826 0.00 0.00 0.00 2.59
4579 6889 2.296471 ACCCATATCGGAGAAGCTAACG 59.704 50.000 0.00 0.00 43.58 3.18
4642 6952 7.765695 ACAATCACACCAGAATACTGAAAAT 57.234 32.000 0.00 0.00 46.03 1.82
4654 6964 3.565482 ACTTGCTACAACAATCACACCAG 59.435 43.478 0.00 0.00 0.00 4.00
4695 7012 6.998074 AGCGACAAATAATATGGATGGAAGAA 59.002 34.615 0.00 0.00 0.00 2.52
4696 7013 6.533730 AGCGACAAATAATATGGATGGAAGA 58.466 36.000 0.00 0.00 0.00 2.87
4699 7016 4.929211 CGAGCGACAAATAATATGGATGGA 59.071 41.667 0.00 0.00 0.00 3.41
4701 7018 5.845985 ACGAGCGACAAATAATATGGATG 57.154 39.130 0.00 0.00 0.00 3.51
4704 7021 7.173863 ACTAAACGAGCGACAAATAATATGG 57.826 36.000 0.00 0.00 0.00 2.74
4713 7030 4.362279 ACTTTGTACTAAACGAGCGACAA 58.638 39.130 0.00 0.00 34.22 3.18
4738 7055 8.804204 ACTCGCTGGTTTAGTATAAAGCTATAT 58.196 33.333 11.44 0.00 0.00 0.86
4743 7060 5.350640 ACAACTCGCTGGTTTAGTATAAAGC 59.649 40.000 4.87 4.87 0.00 3.51
4769 7108 8.428186 TTGTCACTGGTTTAGTACAAAGTTAG 57.572 34.615 0.00 0.00 37.60 2.34
4784 7123 4.382685 CGGTCCATATTACTTGTCACTGGT 60.383 45.833 0.00 0.00 0.00 4.00
4805 7144 2.169769 TGCAATTTACTACTCCCTCCGG 59.830 50.000 0.00 0.00 0.00 5.14
4807 7146 3.542648 GGTGCAATTTACTACTCCCTCC 58.457 50.000 0.00 0.00 0.00 4.30
4814 7153 2.988493 TGTCGTCGGTGCAATTTACTAC 59.012 45.455 0.00 0.00 0.00 2.73
4819 7158 0.865769 GACTGTCGTCGGTGCAATTT 59.134 50.000 0.00 0.00 32.75 1.82
4828 7167 1.781429 CAACTTCACAGACTGTCGTCG 59.219 52.381 4.74 0.00 44.93 5.12
4829 7168 2.789893 GACAACTTCACAGACTGTCGTC 59.210 50.000 4.74 2.60 40.54 4.20
4830 7169 2.481449 GGACAACTTCACAGACTGTCGT 60.481 50.000 4.74 0.48 37.32 4.34
4831 7170 2.128035 GGACAACTTCACAGACTGTCG 58.872 52.381 4.74 1.99 37.32 4.35
4909 7248 4.223953 AGCTCGGGGAGAATAACTTGATA 58.776 43.478 0.00 0.00 0.00 2.15
4919 7258 2.160721 ATTCTGTAGCTCGGGGAGAA 57.839 50.000 0.00 0.00 0.00 2.87
4920 7259 2.865079 CTATTCTGTAGCTCGGGGAGA 58.135 52.381 0.00 0.00 0.00 3.71
4925 7264 1.040646 TGGGCTATTCTGTAGCTCGG 58.959 55.000 6.97 0.00 43.72 4.63
4926 7265 1.409064 TGTGGGCTATTCTGTAGCTCG 59.591 52.381 6.97 0.00 43.72 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.