Multiple sequence alignment - TraesCS6B01G372300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G372300 chr6B 100.000 3648 0 0 1 3648 645662206 645658559 0.000000e+00 6737.0
1 TraesCS6B01G372300 chr6B 97.315 1043 22 5 1 1039 645979257 645980297 0.000000e+00 1766.0
2 TraesCS6B01G372300 chr6B 95.925 859 30 2 1077 1931 645980467 645981324 0.000000e+00 1387.0
3 TraesCS6B01G372300 chr6B 88.832 394 41 3 1521 1913 645981514 645981905 7.080000e-132 481.0
4 TraesCS6B01G372300 chr6B 99.115 113 1 0 1933 2045 645981399 645981511 1.720000e-48 204.0
5 TraesCS6B01G372300 chr6B 100.000 36 0 0 1 36 645949817 645949852 2.350000e-07 67.6
6 TraesCS6B01G372300 chr6D 91.676 901 59 8 1029 1915 428981785 428980887 0.000000e+00 1234.0
7 TraesCS6B01G372300 chr6D 83.066 1122 120 28 1975 3053 428979957 428978863 0.000000e+00 955.0
8 TraesCS6B01G372300 chr6D 93.132 597 15 8 1 596 428983616 428983045 0.000000e+00 852.0
9 TraesCS6B01G372300 chr6D 90.727 399 30 6 1521 1915 428980580 428980185 3.230000e-145 525.0
10 TraesCS6B01G372300 chr6D 97.368 114 3 0 1908 2021 428980703 428980590 1.030000e-45 195.0
11 TraesCS6B01G372300 chr6D 98.214 56 1 0 769 824 428983052 428982997 8.340000e-17 99.0
12 TraesCS6B01G372300 chr6A 93.236 547 29 4 1139 1680 574213633 574214176 0.000000e+00 798.0
13 TraesCS6B01G372300 chr6A 93.223 546 29 4 1140 1680 573644591 573644049 0.000000e+00 797.0
14 TraesCS6B01G372300 chr6A 82.169 673 99 12 1975 2627 573643175 573642504 3.180000e-155 558.0
15 TraesCS6B01G372300 chr6A 82.309 667 97 12 1975 2621 574215050 574215715 3.180000e-155 558.0
16 TraesCS6B01G372300 chr6A 89.663 445 22 7 2533 2958 574215725 574216164 2.480000e-151 545.0
17 TraesCS6B01G372300 chr6A 90.727 399 30 6 1521 1915 573643960 573643565 3.230000e-145 525.0
18 TraesCS6B01G372300 chr6A 90.476 399 31 6 1521 1915 574214265 574214660 1.500000e-143 520.0
19 TraesCS6B01G372300 chr6A 89.125 377 19 8 2533 2889 573642500 573642126 2.000000e-122 449.0
20 TraesCS6B01G372300 chr6A 90.055 181 11 4 2826 3004 573642152 573641977 1.020000e-55 228.0
21 TraesCS6B01G372300 chr6A 92.857 112 6 2 1 110 574213510 574213621 1.050000e-35 161.0
22 TraesCS6B01G372300 chr6A 91.964 112 7 2 1 110 573644715 573644604 4.880000e-34 156.0
23 TraesCS6B01G372300 chr6A 97.727 88 2 0 1934 2021 573644057 573643970 6.310000e-33 152.0
24 TraesCS6B01G372300 chr6A 97.727 88 2 0 1934 2021 574214168 574214255 6.310000e-33 152.0
25 TraesCS6B01G372300 chr6A 90.196 102 7 2 3118 3219 574216369 574216467 2.960000e-26 130.0
26 TraesCS6B01G372300 chr5D 89.014 355 23 11 3249 3591 526877802 526878152 3.370000e-115 425.0
27 TraesCS6B01G372300 chr5D 86.721 369 31 9 3235 3590 411789674 411789311 9.490000e-106 394.0
28 TraesCS6B01G372300 chr5D 87.324 355 30 9 3249 3590 362192877 362192525 3.410000e-105 392.0
29 TraesCS6B01G372300 chr5D 85.955 356 26 14 3249 3590 540196028 540195683 3.460000e-95 359.0
30 TraesCS6B01G372300 chr7A 87.838 370 24 11 3236 3591 195411755 195412117 7.290000e-112 414.0
31 TraesCS6B01G372300 chr7A 87.805 369 26 12 3236 3590 545066042 545065679 7.290000e-112 414.0
32 TraesCS6B01G372300 chr7A 87.675 357 27 11 3249 3590 150237167 150237521 2.040000e-107 399.0
33 TraesCS6B01G372300 chr1D 88.406 345 17 17 3261 3590 376282932 376283268 9.490000e-106 394.0
34 TraesCS6B01G372300 chr1B 86.885 366 26 10 3240 3590 648790255 648790613 1.230000e-104 390.0
35 TraesCS6B01G372300 chr7D 89.577 307 23 7 3235 3538 194498805 194499105 7.390000e-102 381.0
36 TraesCS6B01G372300 chr3B 86.798 356 29 12 3249 3590 750348485 750348134 7.390000e-102 381.0
37 TraesCS6B01G372300 chr3A 88.968 281 16 9 3249 3516 57205767 57206045 2.100000e-87 333.0
38 TraesCS6B01G372300 chr3D 82.656 369 45 11 3235 3591 615347025 615347386 3.540000e-80 309.0
39 TraesCS6B01G372300 chr2A 81.843 369 46 18 3237 3591 593299234 593299595 1.280000e-74 291.0
40 TraesCS6B01G372300 chr4B 77.663 291 44 15 3246 3534 117108542 117108271 1.360000e-34 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G372300 chr6B 645658559 645662206 3647 True 6737.000000 6737 100.000000 1 3648 1 chr6B.!!$R1 3647
1 TraesCS6B01G372300 chr6B 645979257 645981905 2648 False 959.500000 1766 95.296750 1 2045 4 chr6B.!!$F2 2044
2 TraesCS6B01G372300 chr6D 428978863 428983616 4753 True 643.333333 1234 92.363833 1 3053 6 chr6D.!!$R1 3052
3 TraesCS6B01G372300 chr6A 573641977 573644715 2738 True 409.285714 797 90.712857 1 3004 7 chr6A.!!$R1 3003
4 TraesCS6B01G372300 chr6A 574213510 574216467 2957 False 409.142857 798 90.923429 1 3219 7 chr6A.!!$F1 3218

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 282 1.003118 CGTGTCCAAGATTCTTCCCCA 59.997 52.381 0.0 0.0 0.00 4.96 F
2252 4488 0.109226 GTCTGACCGTGTACCAGAGC 60.109 60.000 0.0 0.0 37.58 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2271 4507 0.321564 CATCTGTTCGGCCCACTGAA 60.322 55.0 11.87 0.56 38.90 3.02 R
3588 6084 0.178767 TATACTGCTGCTGGTGCTGG 59.821 55.0 11.29 0.00 40.48 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
279 282 1.003118 CGTGTCCAAGATTCTTCCCCA 59.997 52.381 0.00 0.00 0.00 4.96
584 588 3.775654 CTCCGGTGACCCTCTGCC 61.776 72.222 0.00 0.00 0.00 4.85
585 589 4.316823 TCCGGTGACCCTCTGCCT 62.317 66.667 0.00 0.00 0.00 4.75
759 763 3.816920 CGCTCGTCTGTTCGCACG 61.817 66.667 0.00 0.00 37.36 5.34
845 849 1.970114 GCCGGCAGATGGATCATGG 60.970 63.158 24.80 0.00 0.00 3.66
847 851 1.453235 CGGCAGATGGATCATGGGT 59.547 57.895 0.00 0.00 0.00 4.51
863 867 3.888093 GGTTCGATACCCATCCGAG 57.112 57.895 5.71 0.00 41.43 4.63
898 904 4.376340 AGCCTCCTTTTATTTTGCATCG 57.624 40.909 0.00 0.00 0.00 3.84
963 1592 8.015087 CCTGCAATCGAATTTATTATTTCGCTA 58.985 33.333 0.00 0.00 43.26 4.26
1014 1643 4.134563 TGCTGAACATGATGGATGATGAG 58.865 43.478 0.00 0.00 35.80 2.90
1065 2076 4.895668 TTTACCTGTCTTTCCACGGTAT 57.104 40.909 0.00 0.00 30.60 2.73
1126 2269 2.027192 TGAATAGGTTGGACACTGAGCC 60.027 50.000 0.00 0.00 0.00 4.70
1420 2571 2.743664 TGATGATTTCAAGCACCTGTCG 59.256 45.455 0.00 0.00 0.00 4.35
1443 2594 2.005451 GAATGCAGAAGATCGTGTGCT 58.995 47.619 26.28 11.43 38.55 4.40
1447 2598 1.470632 GCAGAAGATCGTGTGCTAGCT 60.471 52.381 20.82 0.00 35.03 3.32
1453 2604 3.257393 AGATCGTGTGCTAGCTTTTGAG 58.743 45.455 17.23 2.90 0.00 3.02
1530 2681 6.030548 TCTGAAATCACTGTCTTAGGTCAG 57.969 41.667 0.00 0.00 37.65 3.51
1542 2693 5.997746 TGTCTTAGGTCAGACATTTTCCAAG 59.002 40.000 2.17 0.00 46.76 3.61
1551 2702 7.428826 GTCAGACATTTTCCAAGTTCTGAATT 58.571 34.615 0.00 0.00 35.21 2.17
1642 2797 5.738619 TTCTGTATACTTGCTGTCTCCAA 57.261 39.130 4.17 0.00 0.00 3.53
1749 2904 2.173356 TGGAGCTGGCTAACTATGCAAT 59.827 45.455 0.00 0.00 0.00 3.56
1787 2942 8.886719 CAATGTATGATGACCATGGTATGTATC 58.113 37.037 19.80 18.29 36.71 2.24
2047 4277 4.520492 CCTTTCTGTTTGTACCTGCATCTT 59.480 41.667 0.00 0.00 0.00 2.40
2057 4287 2.522185 ACCTGCATCTTTGATGTGCTT 58.478 42.857 8.98 0.00 39.52 3.91
2058 4288 3.689347 ACCTGCATCTTTGATGTGCTTA 58.311 40.909 8.98 0.00 39.52 3.09
2063 4293 6.861572 CCTGCATCTTTGATGTGCTTATATTG 59.138 38.462 8.98 0.00 39.52 1.90
2082 4312 3.441496 TGCCTTTTTGACAGCTCTTTG 57.559 42.857 0.00 0.00 0.00 2.77
2086 4316 4.446719 GCCTTTTTGACAGCTCTTTGATTG 59.553 41.667 0.00 0.00 0.00 2.67
2123 4353 2.613977 GCAGATTATGGTCCTGATCGGG 60.614 54.545 15.09 15.09 0.00 5.14
2128 4358 2.125106 GGTCCTGATCGGGTGCAC 60.125 66.667 20.32 8.80 0.00 4.57
2130 4360 1.003839 GTCCTGATCGGGTGCACAA 60.004 57.895 20.43 3.50 0.00 3.33
2144 4374 4.537015 GGTGCACAAAATTCAGTGTACTC 58.463 43.478 20.43 13.27 46.26 2.59
2149 4379 3.498397 ACAAAATTCAGTGTACTCTGGCG 59.502 43.478 21.45 8.93 36.25 5.69
2150 4380 1.726853 AATTCAGTGTACTCTGGCGC 58.273 50.000 21.45 0.00 36.25 6.53
2152 4382 0.608130 TTCAGTGTACTCTGGCGCAT 59.392 50.000 21.45 0.00 36.25 4.73
2208 4438 1.492319 GCACACGCCGAACTGTTGTA 61.492 55.000 0.00 0.00 0.00 2.41
2209 4439 0.231279 CACACGCCGAACTGTTGTAC 59.769 55.000 0.00 0.00 0.00 2.90
2223 4453 0.320374 TTGTACACCCAGCTTCGGAG 59.680 55.000 0.00 0.00 0.00 4.63
2226 4456 0.541063 TACACCCAGCTTCGGAGTGA 60.541 55.000 14.56 1.87 33.74 3.41
2228 4458 0.824109 CACCCAGCTTCGGAGTGATA 59.176 55.000 3.52 0.00 32.19 2.15
2229 4459 1.414181 CACCCAGCTTCGGAGTGATAT 59.586 52.381 3.52 0.00 32.19 1.63
2231 4461 2.628657 ACCCAGCTTCGGAGTGATATAC 59.371 50.000 3.52 0.00 0.00 1.47
2252 4488 0.109226 GTCTGACCGTGTACCAGAGC 60.109 60.000 0.00 0.00 37.58 4.09
2256 4492 0.966370 GACCGTGTACCAGAGCCTCT 60.966 60.000 0.00 0.00 0.00 3.69
2299 4535 1.421410 CCGAACAGATGGCTGCGTAC 61.421 60.000 0.00 0.00 46.26 3.67
2314 4550 1.337821 CGTACGCAGAAGTTCTGGAC 58.662 55.000 29.45 15.65 44.43 4.02
2321 4557 3.585862 GCAGAAGTTCTGGACGATTACA 58.414 45.455 29.45 0.00 44.43 2.41
2323 4559 3.614616 CAGAAGTTCTGGACGATTACAGC 59.385 47.826 22.95 0.00 40.71 4.40
2326 4562 2.427453 AGTTCTGGACGATTACAGCGAT 59.573 45.455 0.00 0.00 34.76 4.58
2340 4576 0.179089 AGCGATGAGGTGCATGAGTC 60.179 55.000 0.00 0.00 37.34 3.36
2365 4601 5.237127 TGCATTATACCTGATTCGCTTTGAG 59.763 40.000 0.00 0.00 0.00 3.02
2373 4609 2.813754 TGATTCGCTTTGAGTTGGAAGG 59.186 45.455 0.00 0.00 0.00 3.46
2377 4613 1.248486 GCTTTGAGTTGGAAGGTCCC 58.752 55.000 0.00 0.00 35.03 4.46
2378 4614 1.478654 GCTTTGAGTTGGAAGGTCCCA 60.479 52.381 0.00 0.00 35.03 4.37
2381 4617 0.038166 TGAGTTGGAAGGTCCCATGC 59.962 55.000 0.00 0.00 35.03 4.06
2393 4629 2.126228 CCATGCTTGCAAGGCACG 60.126 61.111 27.10 17.13 42.69 5.34
2395 4631 1.509463 CATGCTTGCAAGGCACGAT 59.491 52.632 27.10 8.73 42.69 3.73
2396 4632 0.524816 CATGCTTGCAAGGCACGATC 60.525 55.000 27.10 9.58 42.69 3.69
2403 4639 1.237285 GCAAGGCACGATCAGTTGGT 61.237 55.000 0.00 0.00 0.00 3.67
2407 4643 1.084289 GGCACGATCAGTTGGTAACC 58.916 55.000 0.00 0.00 0.00 2.85
2413 4649 0.398696 ATCAGTTGGTAACCGTGGCA 59.601 50.000 0.00 0.00 0.00 4.92
2418 4654 1.697082 TTGGTAACCGTGGCAGACCA 61.697 55.000 3.68 3.68 46.51 4.02
2434 4670 3.380004 CAGACCAGTTACTAGGAGAGCAG 59.620 52.174 7.62 0.00 0.00 4.24
2437 4673 2.955660 CCAGTTACTAGGAGAGCAGAGG 59.044 54.545 0.00 0.00 0.00 3.69
2441 4677 2.909504 ACTAGGAGAGCAGAGGAACA 57.090 50.000 0.00 0.00 0.00 3.18
2458 4694 2.755876 ATGAGAGCGCGGGTCAGA 60.756 61.111 8.83 0.00 31.89 3.27
2459 4695 2.130426 ATGAGAGCGCGGGTCAGAT 61.130 57.895 8.83 0.00 31.89 2.90
2461 4697 3.781770 GAGAGCGCGGGTCAGATGG 62.782 68.421 8.83 0.00 31.89 3.51
2471 4707 1.224592 GTCAGATGGGCACGGGAAT 59.775 57.895 0.00 0.00 0.00 3.01
2472 4708 0.468226 GTCAGATGGGCACGGGAATA 59.532 55.000 0.00 0.00 0.00 1.75
2473 4709 0.468226 TCAGATGGGCACGGGAATAC 59.532 55.000 0.00 0.00 0.00 1.89
2476 4712 1.494721 AGATGGGCACGGGAATACATT 59.505 47.619 0.00 0.00 0.00 2.71
2477 4713 1.608590 GATGGGCACGGGAATACATTG 59.391 52.381 0.00 0.00 0.00 2.82
2480 4716 0.663153 GGCACGGGAATACATTGAGC 59.337 55.000 0.00 0.00 0.00 4.26
2481 4717 1.378531 GCACGGGAATACATTGAGCA 58.621 50.000 0.00 0.00 0.00 4.26
2483 4719 1.331756 CACGGGAATACATTGAGCAGC 59.668 52.381 0.00 0.00 0.00 5.25
2500 4736 2.514592 CGGCAGGCATGGTACCAG 60.515 66.667 21.41 13.19 0.00 4.00
2506 4742 1.147153 GGCATGGTACCAGGAGAGC 59.853 63.158 29.94 20.76 0.00 4.09
2507 4743 1.147153 GCATGGTACCAGGAGAGCC 59.853 63.158 29.94 8.04 0.00 4.70
2509 4745 0.755686 CATGGTACCAGGAGAGCCTC 59.244 60.000 22.01 0.00 44.80 4.70
2511 4747 0.116342 TGGTACCAGGAGAGCCTCAA 59.884 55.000 11.60 0.00 44.80 3.02
2513 4749 1.562783 GTACCAGGAGAGCCTCAAGT 58.437 55.000 0.00 1.97 44.80 3.16
2525 4761 1.471684 GCCTCAAGTTTCTGCATCTGG 59.528 52.381 0.00 0.00 0.00 3.86
2526 4762 2.877300 GCCTCAAGTTTCTGCATCTGGA 60.877 50.000 0.00 0.00 0.00 3.86
2527 4763 2.746362 CCTCAAGTTTCTGCATCTGGAC 59.254 50.000 0.00 0.00 0.00 4.02
2529 4765 4.070716 CTCAAGTTTCTGCATCTGGACTT 58.929 43.478 0.00 0.00 0.00 3.01
2530 4766 4.464008 TCAAGTTTCTGCATCTGGACTTT 58.536 39.130 0.00 0.00 0.00 2.66
2532 4768 6.061441 TCAAGTTTCTGCATCTGGACTTTTA 58.939 36.000 0.00 0.00 0.00 1.52
2533 4769 5.948992 AGTTTCTGCATCTGGACTTTTAC 57.051 39.130 0.00 0.00 0.00 2.01
2535 4771 5.827797 AGTTTCTGCATCTGGACTTTTACAA 59.172 36.000 0.00 0.00 0.00 2.41
2541 4888 4.943705 GCATCTGGACTTTTACAATGGAGA 59.056 41.667 0.00 0.00 0.00 3.71
2585 4932 1.798735 CAAGATGTGGAGGCGCAAG 59.201 57.895 10.83 0.00 43.44 4.01
2633 4995 0.319900 GAACGCTGTGGAGAAGCAGA 60.320 55.000 0.00 0.00 40.86 4.26
2639 5001 2.419324 GCTGTGGAGAAGCAGAATCTTG 59.581 50.000 0.00 0.00 40.52 3.02
2644 5006 3.779183 TGGAGAAGCAGAATCTTGAGGAT 59.221 43.478 0.00 0.00 35.97 3.24
2665 5029 1.912862 AGGAATAGGGGATGCCTTGT 58.087 50.000 2.19 0.00 41.58 3.16
2672 5036 1.384191 GGGATGCCTTGTCTTGGGT 59.616 57.895 0.00 0.00 0.00 4.51
2782 5146 3.127030 CGGGTTCTTATGTTCCTCTTTGC 59.873 47.826 0.00 0.00 0.00 3.68
2908 5313 0.249120 CAGGTTCGTGTGGATAGGCA 59.751 55.000 0.00 0.00 0.00 4.75
2909 5314 0.537188 AGGTTCGTGTGGATAGGCAG 59.463 55.000 0.00 0.00 0.00 4.85
2910 5315 0.462047 GGTTCGTGTGGATAGGCAGG 60.462 60.000 0.00 0.00 0.00 4.85
2911 5316 1.090052 GTTCGTGTGGATAGGCAGGC 61.090 60.000 0.00 0.00 0.00 4.85
2935 5341 0.829333 ATCTCTTGCGTGCTGATCCT 59.171 50.000 0.00 0.00 0.00 3.24
2959 5365 5.197451 TCTTTTACGGCATCCCATACATTT 58.803 37.500 0.00 0.00 0.00 2.32
2964 5370 4.532834 ACGGCATCCCATACATTTTACTT 58.467 39.130 0.00 0.00 0.00 2.24
2965 5371 4.338118 ACGGCATCCCATACATTTTACTTG 59.662 41.667 0.00 0.00 0.00 3.16
3029 5435 0.534873 GAGAAGGCTGTCCCTCACTC 59.465 60.000 0.00 0.00 45.62 3.51
3044 5450 2.346803 TCACTCGCCTTGAATTAGTGC 58.653 47.619 0.00 0.00 37.94 4.40
3049 5455 1.196808 CGCCTTGAATTAGTGCACGTT 59.803 47.619 12.01 8.03 0.00 3.99
3050 5456 2.584791 GCCTTGAATTAGTGCACGTTG 58.415 47.619 12.01 0.00 0.00 4.10
3060 5466 2.736995 GCACGTTGCGGCTGTCTA 60.737 61.111 0.00 0.00 31.71 2.59
3061 5467 2.730672 GCACGTTGCGGCTGTCTAG 61.731 63.158 0.00 0.00 31.71 2.43
3062 5468 2.094659 CACGTTGCGGCTGTCTAGG 61.095 63.158 0.00 0.00 0.00 3.02
3065 5471 3.399181 TTGCGGCTGTCTAGGGGG 61.399 66.667 0.00 0.00 0.00 5.40
3067 5473 4.162690 GCGGCTGTCTAGGGGGTG 62.163 72.222 0.00 0.00 0.00 4.61
3068 5474 2.363795 CGGCTGTCTAGGGGGTGA 60.364 66.667 0.00 0.00 0.00 4.02
3080 5576 1.153349 GGGGTGATTGTCTCTCGGC 60.153 63.158 0.00 0.00 0.00 5.54
3121 5617 3.764466 CCAAGCGTCGCCCTCTCT 61.764 66.667 14.86 0.00 0.00 3.10
3122 5618 2.202676 CAAGCGTCGCCCTCTCTC 60.203 66.667 14.86 0.00 0.00 3.20
3123 5619 3.816524 AAGCGTCGCCCTCTCTCG 61.817 66.667 14.86 0.00 0.00 4.04
3130 5626 4.959596 GCCCTCTCTCGGCGATGC 62.960 72.222 11.27 2.96 36.47 3.91
3131 5627 4.292178 CCCTCTCTCGGCGATGCC 62.292 72.222 11.27 0.00 46.75 4.40
3180 5676 2.977772 CTCACTCCCAGATTGAGGAC 57.022 55.000 4.51 0.00 36.25 3.85
3181 5677 2.182827 CTCACTCCCAGATTGAGGACA 58.817 52.381 4.51 0.00 36.25 4.02
3182 5678 2.568956 CTCACTCCCAGATTGAGGACAA 59.431 50.000 4.51 0.00 36.25 3.18
3183 5679 2.568956 TCACTCCCAGATTGAGGACAAG 59.431 50.000 0.00 0.00 39.46 3.16
3184 5680 1.280421 ACTCCCAGATTGAGGACAAGC 59.720 52.381 0.00 0.00 41.92 4.01
3224 5720 3.939564 GGGCATAGCACCCTTTGG 58.060 61.111 0.00 0.00 44.68 3.28
3225 5721 2.426406 GGGCATAGCACCCTTTGGC 61.426 63.158 0.00 0.00 44.68 4.52
3226 5722 1.380380 GGCATAGCACCCTTTGGCT 60.380 57.895 0.00 0.00 40.67 4.75
3227 5723 1.387295 GGCATAGCACCCTTTGGCTC 61.387 60.000 0.00 0.00 40.67 4.70
3228 5724 1.387295 GCATAGCACCCTTTGGCTCC 61.387 60.000 0.00 0.00 41.41 4.70
3229 5725 0.753111 CATAGCACCCTTTGGCTCCC 60.753 60.000 0.00 0.00 41.41 4.30
3230 5726 2.270874 ATAGCACCCTTTGGCTCCCG 62.271 60.000 0.00 0.00 41.41 5.14
3232 5728 4.659172 CACCCTTTGGCTCCCGCA 62.659 66.667 0.00 0.00 38.10 5.69
3233 5729 3.661648 ACCCTTTGGCTCCCGCAT 61.662 61.111 0.00 0.00 38.10 4.73
3234 5730 3.142838 CCCTTTGGCTCCCGCATG 61.143 66.667 0.00 0.00 38.10 4.06
3235 5731 2.361610 CCTTTGGCTCCCGCATGT 60.362 61.111 0.00 0.00 38.10 3.21
3236 5732 1.077787 CCTTTGGCTCCCGCATGTA 60.078 57.895 0.00 0.00 38.10 2.29
3237 5733 0.466189 CCTTTGGCTCCCGCATGTAT 60.466 55.000 0.00 0.00 38.10 2.29
3238 5734 1.392589 CTTTGGCTCCCGCATGTATT 58.607 50.000 0.00 0.00 38.10 1.89
3239 5735 2.571212 CTTTGGCTCCCGCATGTATTA 58.429 47.619 0.00 0.00 38.10 0.98
3240 5736 2.949177 TTGGCTCCCGCATGTATTAT 57.051 45.000 0.00 0.00 38.10 1.28
3241 5737 2.949177 TGGCTCCCGCATGTATTATT 57.051 45.000 0.00 0.00 38.10 1.40
3242 5738 3.222173 TGGCTCCCGCATGTATTATTT 57.778 42.857 0.00 0.00 38.10 1.40
3243 5739 4.359434 TGGCTCCCGCATGTATTATTTA 57.641 40.909 0.00 0.00 38.10 1.40
3244 5740 4.720046 TGGCTCCCGCATGTATTATTTAA 58.280 39.130 0.00 0.00 38.10 1.52
3245 5741 5.133941 TGGCTCCCGCATGTATTATTTAAA 58.866 37.500 0.00 0.00 38.10 1.52
3246 5742 5.594725 TGGCTCCCGCATGTATTATTTAAAA 59.405 36.000 0.00 0.00 38.10 1.52
3247 5743 6.266558 TGGCTCCCGCATGTATTATTTAAAAT 59.733 34.615 0.00 0.00 38.10 1.82
3248 5744 7.448777 TGGCTCCCGCATGTATTATTTAAAATA 59.551 33.333 0.00 0.00 38.10 1.40
3249 5745 8.301002 GGCTCCCGCATGTATTATTTAAAATAA 58.699 33.333 0.00 0.00 38.10 1.40
3250 5746 9.855021 GCTCCCGCATGTATTATTTAAAATAAT 57.145 29.630 0.00 0.00 35.78 1.28
3310 5806 9.794685 TTTAGATTAAATTGACATATTTGCGCA 57.205 25.926 5.66 5.66 0.00 6.09
3311 5807 7.684062 AGATTAAATTGACATATTTGCGCAC 57.316 32.000 11.12 0.00 0.00 5.34
3312 5808 7.483307 AGATTAAATTGACATATTTGCGCACT 58.517 30.769 11.12 2.52 0.00 4.40
3313 5809 8.620416 AGATTAAATTGACATATTTGCGCACTA 58.380 29.630 11.12 5.28 0.00 2.74
3314 5810 8.786937 ATTAAATTGACATATTTGCGCACTAG 57.213 30.769 11.12 0.59 0.00 2.57
3315 5811 5.818136 AATTGACATATTTGCGCACTAGT 57.182 34.783 11.12 4.49 0.00 2.57
3316 5812 6.918892 AATTGACATATTTGCGCACTAGTA 57.081 33.333 11.12 0.00 0.00 1.82
3317 5813 7.496529 AATTGACATATTTGCGCACTAGTAT 57.503 32.000 11.12 0.00 0.00 2.12
3318 5814 8.601845 AATTGACATATTTGCGCACTAGTATA 57.398 30.769 11.12 3.68 0.00 1.47
3319 5815 8.777865 ATTGACATATTTGCGCACTAGTATAT 57.222 30.769 11.12 5.99 0.00 0.86
3320 5816 9.869757 ATTGACATATTTGCGCACTAGTATATA 57.130 29.630 11.12 0.00 0.00 0.86
3321 5817 9.699703 TTGACATATTTGCGCACTAGTATATAA 57.300 29.630 11.12 0.00 0.00 0.98
3322 5818 9.699703 TGACATATTTGCGCACTAGTATATAAA 57.300 29.630 11.12 0.00 0.00 1.40
3329 5825 9.710979 TTTGCGCACTAGTATATAAATTTTCAC 57.289 29.630 11.12 0.00 0.00 3.18
3330 5826 8.426881 TGCGCACTAGTATATAAATTTTCACA 57.573 30.769 5.66 0.00 0.00 3.58
3331 5827 8.884726 TGCGCACTAGTATATAAATTTTCACAA 58.115 29.630 5.66 0.00 0.00 3.33
3332 5828 9.710979 GCGCACTAGTATATAAATTTTCACAAA 57.289 29.630 0.30 0.00 0.00 2.83
3355 5851 3.982127 AAAAACCAACGTGCGAAAAAG 57.018 38.095 0.00 0.00 0.00 2.27
3356 5852 2.923605 AAACCAACGTGCGAAAAAGA 57.076 40.000 0.00 0.00 0.00 2.52
3357 5853 2.182904 AACCAACGTGCGAAAAAGAC 57.817 45.000 0.00 0.00 0.00 3.01
3358 5854 1.088306 ACCAACGTGCGAAAAAGACA 58.912 45.000 0.00 0.00 0.00 3.41
3359 5855 1.469308 ACCAACGTGCGAAAAAGACAA 59.531 42.857 0.00 0.00 0.00 3.18
3360 5856 2.095161 ACCAACGTGCGAAAAAGACAAA 60.095 40.909 0.00 0.00 0.00 2.83
3361 5857 2.917971 CCAACGTGCGAAAAAGACAAAA 59.082 40.909 0.00 0.00 0.00 2.44
3362 5858 3.549873 CCAACGTGCGAAAAAGACAAAAT 59.450 39.130 0.00 0.00 0.00 1.82
3363 5859 4.032331 CCAACGTGCGAAAAAGACAAAATT 59.968 37.500 0.00 0.00 0.00 1.82
3364 5860 5.445275 CCAACGTGCGAAAAAGACAAAATTT 60.445 36.000 0.00 0.00 0.00 1.82
3365 5861 6.237595 CCAACGTGCGAAAAAGACAAAATTTA 60.238 34.615 0.00 0.00 0.00 1.40
3366 5862 7.334009 CAACGTGCGAAAAAGACAAAATTTAT 58.666 30.769 0.00 0.00 0.00 1.40
3367 5863 7.458038 ACGTGCGAAAAAGACAAAATTTATT 57.542 28.000 0.00 0.00 0.00 1.40
3368 5864 7.901002 ACGTGCGAAAAAGACAAAATTTATTT 58.099 26.923 0.00 0.00 0.00 1.40
3369 5865 7.843686 ACGTGCGAAAAAGACAAAATTTATTTG 59.156 29.630 0.00 0.00 35.64 2.32
3370 5866 7.149524 CGTGCGAAAAAGACAAAATTTATTTGC 60.150 33.333 0.00 0.00 32.93 3.68
3371 5867 7.850492 GTGCGAAAAAGACAAAATTTATTTGCT 59.150 29.630 0.00 0.00 32.93 3.91
3372 5868 9.035607 TGCGAAAAAGACAAAATTTATTTGCTA 57.964 25.926 0.00 0.00 32.93 3.49
3391 5887 9.726438 ATTTGCTATTATAGGTCACTATTCACC 57.274 33.333 1.12 0.00 40.35 4.02
3392 5888 7.241042 TGCTATTATAGGTCACTATTCACCC 57.759 40.000 1.12 0.00 40.35 4.61
3393 5889 7.016914 TGCTATTATAGGTCACTATTCACCCT 58.983 38.462 1.12 0.00 40.35 4.34
3394 5890 8.174757 TGCTATTATAGGTCACTATTCACCCTA 58.825 37.037 1.12 0.00 40.35 3.53
3395 5891 9.203163 GCTATTATAGGTCACTATTCACCCTAT 57.797 37.037 1.12 0.00 40.35 2.57
3400 5896 6.636454 AGGTCACTATTCACCCTATTTTGA 57.364 37.500 0.00 0.00 32.45 2.69
3401 5897 6.415573 AGGTCACTATTCACCCTATTTTGAC 58.584 40.000 0.00 0.00 32.45 3.18
3402 5898 5.589050 GGTCACTATTCACCCTATTTTGACC 59.411 44.000 0.00 0.00 42.64 4.02
3403 5899 5.293569 GTCACTATTCACCCTATTTTGACCG 59.706 44.000 0.00 0.00 0.00 4.79
3404 5900 5.188163 TCACTATTCACCCTATTTTGACCGA 59.812 40.000 0.00 0.00 0.00 4.69
3405 5901 5.878116 CACTATTCACCCTATTTTGACCGAA 59.122 40.000 0.00 0.00 0.00 4.30
3406 5902 6.373216 CACTATTCACCCTATTTTGACCGAAA 59.627 38.462 0.00 0.00 0.00 3.46
3407 5903 6.943718 ACTATTCACCCTATTTTGACCGAAAA 59.056 34.615 0.00 0.00 37.93 2.29
3408 5904 6.850752 ATTCACCCTATTTTGACCGAAAAT 57.149 33.333 0.00 0.00 44.77 1.82
3409 5905 6.658188 TTCACCCTATTTTGACCGAAAATT 57.342 33.333 0.00 0.00 40.73 1.82
3410 5906 6.658188 TCACCCTATTTTGACCGAAAATTT 57.342 33.333 0.00 0.00 40.73 1.82
3411 5907 6.451393 TCACCCTATTTTGACCGAAAATTTG 58.549 36.000 0.00 0.00 40.73 2.32
3412 5908 6.041069 TCACCCTATTTTGACCGAAAATTTGT 59.959 34.615 0.00 0.00 40.73 2.83
3413 5909 6.364976 CACCCTATTTTGACCGAAAATTTGTC 59.635 38.462 0.00 0.00 40.73 3.18
3414 5910 6.266786 ACCCTATTTTGACCGAAAATTTGTCT 59.733 34.615 8.19 0.00 40.73 3.41
3415 5911 7.151976 CCCTATTTTGACCGAAAATTTGTCTT 58.848 34.615 8.19 0.00 40.73 3.01
3416 5912 7.655732 CCCTATTTTGACCGAAAATTTGTCTTT 59.344 33.333 8.19 0.00 40.73 2.52
3417 5913 9.040939 CCTATTTTGACCGAAAATTTGTCTTTT 57.959 29.630 8.19 0.00 40.73 2.27
3442 5938 8.533569 TTTTGGAAAATAAGTCAAAGAGGAGT 57.466 30.769 0.00 0.00 31.89 3.85
3443 5939 9.635404 TTTTGGAAAATAAGTCAAAGAGGAGTA 57.365 29.630 0.00 0.00 31.89 2.59
3444 5940 9.807921 TTTGGAAAATAAGTCAAAGAGGAGTAT 57.192 29.630 0.00 0.00 0.00 2.12
3445 5941 9.807921 TTGGAAAATAAGTCAAAGAGGAGTATT 57.192 29.630 0.00 0.00 0.00 1.89
3446 5942 9.449719 TGGAAAATAAGTCAAAGAGGAGTATTC 57.550 33.333 0.00 0.00 0.00 1.75
3447 5943 9.674068 GGAAAATAAGTCAAAGAGGAGTATTCT 57.326 33.333 0.00 0.00 0.00 2.40
3453 5949 8.753497 AAGTCAAAGAGGAGTATTCTTTTTGT 57.247 30.769 0.00 0.00 41.60 2.83
3454 5950 8.159344 AGTCAAAGAGGAGTATTCTTTTTGTG 57.841 34.615 0.00 0.00 41.60 3.33
3455 5951 7.993183 AGTCAAAGAGGAGTATTCTTTTTGTGA 59.007 33.333 0.00 0.00 41.60 3.58
3456 5952 8.621286 GTCAAAGAGGAGTATTCTTTTTGTGAA 58.379 33.333 0.00 0.00 41.60 3.18
3457 5953 9.184523 TCAAAGAGGAGTATTCTTTTTGTGAAA 57.815 29.630 0.00 0.00 41.60 2.69
3458 5954 9.237846 CAAAGAGGAGTATTCTTTTTGTGAAAC 57.762 33.333 0.00 0.00 41.60 2.78
3459 5955 8.753497 AAGAGGAGTATTCTTTTTGTGAAACT 57.247 30.769 0.00 0.00 31.92 2.66
3460 5956 8.753497 AGAGGAGTATTCTTTTTGTGAAACTT 57.247 30.769 0.00 0.00 38.04 2.66
3461 5957 9.190317 AGAGGAGTATTCTTTTTGTGAAACTTT 57.810 29.630 0.00 0.00 38.04 2.66
3462 5958 9.803315 GAGGAGTATTCTTTTTGTGAAACTTTT 57.197 29.630 0.00 0.00 38.04 2.27
3463 5959 9.803315 AGGAGTATTCTTTTTGTGAAACTTTTC 57.197 29.630 0.00 0.00 38.04 2.29
3464 5960 9.803315 GGAGTATTCTTTTTGTGAAACTTTTCT 57.197 29.630 3.48 0.00 38.02 2.52
3468 5964 7.883229 TTCTTTTTGTGAAACTTTTCTCACC 57.117 32.000 6.07 0.00 41.07 4.02
3469 5965 6.987386 TCTTTTTGTGAAACTTTTCTCACCA 58.013 32.000 6.07 0.00 41.07 4.17
3470 5966 7.090173 TCTTTTTGTGAAACTTTTCTCACCAG 58.910 34.615 6.07 3.96 41.07 4.00
3471 5967 5.975693 TTTGTGAAACTTTTCTCACCAGT 57.024 34.783 6.07 0.00 41.07 4.00
3472 5968 7.455641 TTTTGTGAAACTTTTCTCACCAGTA 57.544 32.000 6.07 0.00 41.07 2.74
3473 5969 6.431198 TTGTGAAACTTTTCTCACCAGTAC 57.569 37.500 6.07 0.00 41.07 2.73
3474 5970 5.492895 TGTGAAACTTTTCTCACCAGTACA 58.507 37.500 0.00 0.00 41.07 2.90
3475 5971 5.941058 TGTGAAACTTTTCTCACCAGTACAA 59.059 36.000 0.00 0.00 41.07 2.41
3476 5972 6.601613 TGTGAAACTTTTCTCACCAGTACAAT 59.398 34.615 0.00 0.00 41.07 2.71
3477 5973 6.912591 GTGAAACTTTTCTCACCAGTACAATG 59.087 38.462 0.00 0.00 36.72 2.82
3478 5974 6.826231 TGAAACTTTTCTCACCAGTACAATGA 59.174 34.615 0.00 0.00 38.02 2.57
3479 5975 7.338196 TGAAACTTTTCTCACCAGTACAATGAA 59.662 33.333 0.00 0.00 38.02 2.57
3480 5976 7.639113 AACTTTTCTCACCAGTACAATGAAA 57.361 32.000 0.00 0.00 0.00 2.69
3481 5977 7.264373 ACTTTTCTCACCAGTACAATGAAAG 57.736 36.000 0.00 0.00 0.00 2.62
3482 5978 6.263168 ACTTTTCTCACCAGTACAATGAAAGG 59.737 38.462 0.00 0.00 0.00 3.11
3483 5979 4.974645 TCTCACCAGTACAATGAAAGGT 57.025 40.909 0.00 0.00 0.00 3.50
3484 5980 4.894784 TCTCACCAGTACAATGAAAGGTC 58.105 43.478 0.00 0.00 0.00 3.85
3485 5981 4.346709 TCTCACCAGTACAATGAAAGGTCA 59.653 41.667 0.00 0.00 38.41 4.02
3486 5982 5.042463 TCACCAGTACAATGAAAGGTCAA 57.958 39.130 0.00 0.00 37.30 3.18
3487 5983 5.063204 TCACCAGTACAATGAAAGGTCAAG 58.937 41.667 0.00 0.00 37.30 3.02
3488 5984 4.821805 CACCAGTACAATGAAAGGTCAAGT 59.178 41.667 0.00 0.00 37.30 3.16
3489 5985 5.299279 CACCAGTACAATGAAAGGTCAAGTT 59.701 40.000 0.00 0.00 37.30 2.66
3490 5986 5.891551 ACCAGTACAATGAAAGGTCAAGTTT 59.108 36.000 0.00 0.00 37.30 2.66
3491 5987 7.012894 CACCAGTACAATGAAAGGTCAAGTTTA 59.987 37.037 0.00 0.00 37.30 2.01
3492 5988 7.724061 ACCAGTACAATGAAAGGTCAAGTTTAT 59.276 33.333 0.00 0.00 37.30 1.40
3493 5989 8.576442 CCAGTACAATGAAAGGTCAAGTTTATT 58.424 33.333 0.00 0.00 37.30 1.40
3494 5990 9.965824 CAGTACAATGAAAGGTCAAGTTTATTT 57.034 29.630 0.00 0.00 37.30 1.40
3496 5992 9.959749 GTACAATGAAAGGTCAAGTTTATTTCA 57.040 29.630 1.61 1.61 42.26 2.69
3498 5994 9.883142 ACAATGAAAGGTCAAGTTTATTTCAAA 57.117 25.926 3.13 0.00 41.62 2.69
3543 6039 9.429359 TGACTTTTTGTTGAATTGCTAAAAAGA 57.571 25.926 20.65 3.74 44.74 2.52
3549 6045 8.954950 TTGTTGAATTGCTAAAAAGAATTCCA 57.045 26.923 0.65 0.00 35.91 3.53
3550 6046 9.558396 TTGTTGAATTGCTAAAAAGAATTCCAT 57.442 25.926 0.65 0.00 35.91 3.41
3557 6053 9.660544 ATTGCTAAAAAGAATTCCATATAGGGT 57.339 29.630 2.85 0.00 38.24 4.34
3559 6055 9.569122 TGCTAAAAAGAATTCCATATAGGGTAC 57.431 33.333 2.85 0.00 38.24 3.34
3560 6056 9.569122 GCTAAAAAGAATTCCATATAGGGTACA 57.431 33.333 2.85 0.00 38.24 2.90
3577 6073 4.405116 GTACATATGTACCCGGAACCAA 57.595 45.455 28.48 0.00 43.73 3.67
3578 6074 4.768583 GTACATATGTACCCGGAACCAAA 58.231 43.478 28.48 0.00 43.73 3.28
3579 6075 3.613030 ACATATGTACCCGGAACCAAAC 58.387 45.455 6.56 0.00 0.00 2.93
3580 6076 2.383368 TATGTACCCGGAACCAAACG 57.617 50.000 0.73 0.00 0.00 3.60
3585 6081 2.670592 CCGGAACCAAACGGTCCC 60.671 66.667 0.00 0.00 44.85 4.46
3586 6082 2.670592 CGGAACCAAACGGTCCCC 60.671 66.667 0.00 0.00 34.92 4.81
3587 6083 2.841317 GGAACCAAACGGTCCCCT 59.159 61.111 0.00 0.00 34.92 4.79
3588 6084 1.303074 GGAACCAAACGGTCCCCTC 60.303 63.158 0.00 0.00 34.92 4.30
3589 6085 1.303074 GAACCAAACGGTCCCCTCC 60.303 63.158 0.00 0.00 34.92 4.30
3590 6086 2.059345 GAACCAAACGGTCCCCTCCA 62.059 60.000 0.00 0.00 34.92 3.86
3591 6087 2.064242 AACCAAACGGTCCCCTCCAG 62.064 60.000 0.00 0.00 34.92 3.86
3592 6088 2.359975 CAAACGGTCCCCTCCAGC 60.360 66.667 0.00 0.00 0.00 4.85
3593 6089 2.852075 AAACGGTCCCCTCCAGCA 60.852 61.111 0.00 0.00 0.00 4.41
3594 6090 3.192103 AAACGGTCCCCTCCAGCAC 62.192 63.158 0.00 0.00 0.00 4.40
3597 6093 3.721706 GGTCCCCTCCAGCACCAG 61.722 72.222 0.00 0.00 0.00 4.00
3598 6094 4.416738 GTCCCCTCCAGCACCAGC 62.417 72.222 0.00 0.00 42.56 4.85
3599 6095 4.980592 TCCCCTCCAGCACCAGCA 62.981 66.667 0.00 0.00 45.49 4.41
3600 6096 4.421515 CCCCTCCAGCACCAGCAG 62.422 72.222 0.00 0.00 45.49 4.24
3602 6098 4.340246 CCTCCAGCACCAGCAGCA 62.340 66.667 0.00 0.00 45.49 4.41
3603 6099 2.746671 CTCCAGCACCAGCAGCAG 60.747 66.667 0.00 0.00 45.49 4.24
3604 6100 3.548306 CTCCAGCACCAGCAGCAGT 62.548 63.158 0.00 0.00 45.49 4.40
3605 6101 2.176314 CTCCAGCACCAGCAGCAGTA 62.176 60.000 0.00 0.00 45.49 2.74
3606 6102 1.077930 CCAGCACCAGCAGCAGTAT 60.078 57.895 0.00 0.00 45.49 2.12
3607 6103 0.178767 CCAGCACCAGCAGCAGTATA 59.821 55.000 0.00 0.00 45.49 1.47
3608 6104 1.202734 CCAGCACCAGCAGCAGTATAT 60.203 52.381 0.00 0.00 45.49 0.86
3609 6105 2.037641 CCAGCACCAGCAGCAGTATATA 59.962 50.000 0.00 0.00 45.49 0.86
3610 6106 3.307269 CCAGCACCAGCAGCAGTATATAT 60.307 47.826 0.00 0.00 45.49 0.86
3611 6107 4.081476 CCAGCACCAGCAGCAGTATATATA 60.081 45.833 0.00 0.00 45.49 0.86
3612 6108 5.107824 CAGCACCAGCAGCAGTATATATAG 58.892 45.833 0.00 0.00 45.49 1.31
3613 6109 5.019470 AGCACCAGCAGCAGTATATATAGA 58.981 41.667 0.00 0.00 45.49 1.98
3614 6110 5.126869 AGCACCAGCAGCAGTATATATAGAG 59.873 44.000 0.00 0.00 45.49 2.43
3615 6111 5.680922 GCACCAGCAGCAGTATATATAGAGG 60.681 48.000 0.00 0.00 41.58 3.69
3616 6112 5.654209 CACCAGCAGCAGTATATATAGAGGA 59.346 44.000 0.00 0.00 0.00 3.71
3617 6113 6.153510 CACCAGCAGCAGTATATATAGAGGAA 59.846 42.308 0.00 0.00 0.00 3.36
3618 6114 6.726299 ACCAGCAGCAGTATATATAGAGGAAA 59.274 38.462 0.00 0.00 0.00 3.13
3619 6115 7.235606 ACCAGCAGCAGTATATATAGAGGAAAA 59.764 37.037 0.00 0.00 0.00 2.29
3620 6116 7.547370 CCAGCAGCAGTATATATAGAGGAAAAC 59.453 40.741 0.00 0.00 0.00 2.43
3621 6117 8.090831 CAGCAGCAGTATATATAGAGGAAAACA 58.909 37.037 0.00 0.00 0.00 2.83
3622 6118 8.820831 AGCAGCAGTATATATAGAGGAAAACAT 58.179 33.333 0.00 0.00 0.00 2.71
3634 6130 8.857694 ATAGAGGAAAACATAGGAAAAACGAA 57.142 30.769 0.00 0.00 0.00 3.85
3635 6131 6.967135 AGAGGAAAACATAGGAAAAACGAAC 58.033 36.000 0.00 0.00 0.00 3.95
3636 6132 6.016527 AGAGGAAAACATAGGAAAAACGAACC 60.017 38.462 0.00 0.00 0.00 3.62
3637 6133 5.831525 AGGAAAACATAGGAAAAACGAACCT 59.168 36.000 0.00 0.00 37.76 3.50
3638 6134 6.016527 AGGAAAACATAGGAAAAACGAACCTC 60.017 38.462 0.00 0.00 35.52 3.85
3639 6135 5.352643 AAACATAGGAAAAACGAACCTCG 57.647 39.130 0.00 0.00 46.93 4.63
3640 6136 3.332034 ACATAGGAAAAACGAACCTCGG 58.668 45.455 0.67 0.00 45.59 4.63
3641 6137 3.244318 ACATAGGAAAAACGAACCTCGGT 60.244 43.478 0.67 0.00 44.55 4.69
3647 6143 3.780925 AACGAACCTCGGTTAGTCG 57.219 52.632 13.70 10.30 35.55 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
279 282 3.771160 GGACACGGAGCCGGTGAT 61.771 66.667 14.07 0.00 44.69 3.06
613 617 2.479219 GGCGGAAGGTTCTACTAAGACG 60.479 54.545 0.00 0.00 0.00 4.18
617 621 0.174162 GCGGCGGAAGGTTCTACTAA 59.826 55.000 9.78 0.00 0.00 2.24
742 746 3.816920 CGTGCGAACAGACGAGCG 61.817 66.667 0.00 0.00 37.81 5.03
769 773 0.671796 GTTCCGACAACCAAAAGGGG 59.328 55.000 0.00 0.00 42.91 4.79
847 851 0.757561 TGCCTCGGATGGGTATCGAA 60.758 55.000 0.00 0.00 33.98 3.71
863 867 0.109532 GAGGCTTATTCCCCTCTGCC 59.890 60.000 0.00 0.00 43.42 4.85
898 904 3.610585 CGATAGGAGCAAGATTCGGAGAC 60.611 52.174 0.00 0.00 34.32 3.36
963 1592 8.393671 TGAAAATGCAATTGAATAAAGGCTTT 57.606 26.923 17.76 17.76 36.10 3.51
1014 1643 6.388278 ACCGACTAAGACTCACTTGAATAAC 58.612 40.000 0.00 0.00 39.38 1.89
1048 2059 7.519970 GCATTAATAATACCGTGGAAAGACAGG 60.520 40.741 0.00 0.00 0.00 4.00
1060 2071 9.988350 GTCCTGATTAATGCATTAATAATACCG 57.012 33.333 33.92 21.23 41.59 4.02
1065 2076 9.851686 AGTGAGTCCTGATTAATGCATTAATAA 57.148 29.630 33.92 28.26 41.59 1.40
1126 2269 3.692690 TCTTCGGAATAAACCCCCAAAG 58.307 45.455 0.00 0.00 0.00 2.77
1323 2474 3.882288 GCACCATGGGAAACAACAAATTT 59.118 39.130 18.09 0.00 0.00 1.82
1325 2476 2.437281 TGCACCATGGGAAACAACAAAT 59.563 40.909 18.09 0.00 0.00 2.32
1420 2571 2.005451 ACACGATCTTCTGCATTCTGC 58.995 47.619 0.00 0.00 45.29 4.26
1437 2588 3.142174 AGTTCCTCAAAAGCTAGCACAC 58.858 45.455 18.83 0.00 0.00 3.82
1443 2594 4.202284 ACGTACCAAGTTCCTCAAAAGCTA 60.202 41.667 0.00 0.00 0.00 3.32
1447 2598 2.614983 GCACGTACCAAGTTCCTCAAAA 59.385 45.455 0.00 0.00 0.00 2.44
1453 2604 1.002142 GGTTTGCACGTACCAAGTTCC 60.002 52.381 0.20 3.00 34.48 3.62
1501 2652 7.038729 ACCTAAGACAGTGATTTCAGATTCAGA 60.039 37.037 0.00 0.00 0.00 3.27
1551 2702 7.667557 ACACAGCAGTTTACTCAAGTAAGATA 58.332 34.615 3.08 0.00 41.03 1.98
1568 2719 5.452302 CGTTTTCTTTTAGACAACACAGCAG 59.548 40.000 6.55 0.00 35.28 4.24
1663 2818 9.358406 TCATCTGCACCATTATAAATCAGAAAT 57.642 29.630 0.00 0.00 33.54 2.17
1667 2822 8.387190 TCTTCATCTGCACCATTATAAATCAG 57.613 34.615 0.00 0.00 0.00 2.90
1673 2828 9.662947 CAGATTATCTTCATCTGCACCATTATA 57.337 33.333 0.00 0.00 40.91 0.98
1680 2835 5.411977 CCCATCAGATTATCTTCATCTGCAC 59.588 44.000 5.23 0.00 45.10 4.57
1749 2904 3.604582 TCATACATTGGCACGTGATTCA 58.395 40.909 22.23 11.12 0.00 2.57
1787 2942 8.887717 CAGATCCATCCTAAAACTAAAGAGTTG 58.112 37.037 0.00 0.00 45.50 3.16
2047 4277 7.545265 GTCAAAAAGGCAATATAAGCACATCAA 59.455 33.333 2.92 0.00 0.00 2.57
2057 4287 7.176515 TCAAAGAGCTGTCAAAAAGGCAATATA 59.823 33.333 0.00 0.00 0.00 0.86
2058 4288 5.990120 AAGAGCTGTCAAAAAGGCAATAT 57.010 34.783 0.00 0.00 0.00 1.28
2063 4293 3.715628 TCAAAGAGCTGTCAAAAAGGC 57.284 42.857 0.00 0.00 0.00 4.35
2082 4312 4.819769 TGCCAGGAAATAAGTTTGCAATC 58.180 39.130 0.00 0.00 38.04 2.67
2086 4316 4.725790 ATCTGCCAGGAAATAAGTTTGC 57.274 40.909 0.00 0.00 36.07 3.68
2123 4353 5.207768 CAGAGTACACTGAATTTTGTGCAC 58.792 41.667 14.43 10.75 39.94 4.57
2128 4358 3.667960 GCGCCAGAGTACACTGAATTTTG 60.668 47.826 20.35 5.00 39.94 2.44
2130 4360 2.076863 GCGCCAGAGTACACTGAATTT 58.923 47.619 20.35 0.00 39.94 1.82
2149 4379 1.662309 GCTGCATATCGCTGTGAATGC 60.662 52.381 20.99 20.99 43.06 3.56
2150 4380 1.600485 TGCTGCATATCGCTGTGAATG 59.400 47.619 0.00 2.51 43.06 2.67
2152 4382 1.009078 GTGCTGCATATCGCTGTGAA 58.991 50.000 5.27 0.00 43.06 3.18
2166 4396 1.004595 CATGTCGAGACCATGTGCTG 58.995 55.000 6.38 0.00 0.00 4.41
2199 4429 2.572290 GAAGCTGGGTGTACAACAGTT 58.428 47.619 22.55 17.13 34.79 3.16
2208 4438 1.194781 ATCACTCCGAAGCTGGGTGT 61.195 55.000 2.75 4.51 34.08 4.16
2209 4439 0.824109 TATCACTCCGAAGCTGGGTG 59.176 55.000 4.15 0.23 33.84 4.61
2245 4481 1.077068 CTCGAGGAGAGGCTCTGGT 60.077 63.158 24.21 8.49 43.20 4.00
2246 4482 3.840437 CTCGAGGAGAGGCTCTGG 58.160 66.667 24.21 8.38 43.20 3.86
2256 4492 0.687757 CTGAATGGTCCCCTCGAGGA 60.688 60.000 33.39 13.04 38.24 3.71
2271 4507 0.321564 CATCTGTTCGGCCCACTGAA 60.322 55.000 11.87 0.56 38.90 3.02
2274 4510 2.671070 CCATCTGTTCGGCCCACT 59.329 61.111 0.00 0.00 0.00 4.00
2299 4535 1.714794 AATCGTCCAGAACTTCTGCG 58.285 50.000 12.69 11.63 42.98 5.18
2314 4550 0.855349 GCACCTCATCGCTGTAATCG 59.145 55.000 0.00 0.00 0.00 3.34
2321 4557 0.179089 GACTCATGCACCTCATCGCT 60.179 55.000 0.00 0.00 31.79 4.93
2323 4559 1.568606 CAGACTCATGCACCTCATCG 58.431 55.000 0.00 0.00 31.79 3.84
2335 4571 5.532557 CGAATCAGGTATAATGCAGACTCA 58.467 41.667 0.00 0.00 0.00 3.41
2340 4576 5.237127 TCAAAGCGAATCAGGTATAATGCAG 59.763 40.000 0.00 0.00 0.00 4.41
2344 4580 6.260936 CCAACTCAAAGCGAATCAGGTATAAT 59.739 38.462 0.00 0.00 0.00 1.28
2365 4601 0.890683 CAAGCATGGGACCTTCCAAC 59.109 55.000 0.00 0.00 40.62 3.77
2373 4609 2.277591 TGCCTTGCAAGCATGGGAC 61.278 57.895 21.43 11.65 40.38 4.46
2377 4613 0.524816 GATCGTGCCTTGCAAGCATG 60.525 55.000 24.92 24.92 46.46 4.06
2378 4614 0.961857 TGATCGTGCCTTGCAAGCAT 60.962 50.000 21.43 7.88 43.29 3.79
2381 4617 0.877071 AACTGATCGTGCCTTGCAAG 59.123 50.000 19.93 19.93 41.47 4.01
2393 4629 1.084289 GCCACGGTTACCAACTGATC 58.916 55.000 1.13 0.00 40.26 2.92
2395 4631 0.250124 CTGCCACGGTTACCAACTGA 60.250 55.000 1.13 0.00 40.26 3.41
2396 4632 0.250124 TCTGCCACGGTTACCAACTG 60.250 55.000 1.13 0.00 43.50 3.16
2403 4639 1.001181 GTAACTGGTCTGCCACGGTTA 59.999 52.381 0.00 0.00 40.46 2.85
2407 4643 1.135083 CCTAGTAACTGGTCTGCCACG 60.135 57.143 0.00 0.00 40.46 4.94
2413 4649 3.267291 TCTGCTCTCCTAGTAACTGGTCT 59.733 47.826 0.00 0.00 0.00 3.85
2418 4654 4.263994 TGTTCCTCTGCTCTCCTAGTAACT 60.264 45.833 0.00 0.00 0.00 2.24
2423 4659 3.295093 TCATGTTCCTCTGCTCTCCTAG 58.705 50.000 0.00 0.00 0.00 3.02
2426 4662 2.101249 CTCTCATGTTCCTCTGCTCTCC 59.899 54.545 0.00 0.00 0.00 3.71
2434 4670 1.880340 CCGCGCTCTCATGTTCCTC 60.880 63.158 5.56 0.00 0.00 3.71
2437 4673 2.125512 ACCCGCGCTCTCATGTTC 60.126 61.111 5.56 0.00 0.00 3.18
2441 4677 2.130426 ATCTGACCCGCGCTCTCAT 61.130 57.895 5.56 0.00 0.00 2.90
2458 4694 1.214175 TCAATGTATTCCCGTGCCCAT 59.786 47.619 0.00 0.00 0.00 4.00
2459 4695 0.621082 TCAATGTATTCCCGTGCCCA 59.379 50.000 0.00 0.00 0.00 5.36
2461 4697 0.663153 GCTCAATGTATTCCCGTGCC 59.337 55.000 0.00 0.00 0.00 5.01
2471 4707 1.450134 CCTGCCGCTGCTCAATGTA 60.450 57.895 0.70 0.00 38.71 2.29
2472 4708 2.749044 CCTGCCGCTGCTCAATGT 60.749 61.111 0.70 0.00 38.71 2.71
2473 4709 4.189188 GCCTGCCGCTGCTCAATG 62.189 66.667 0.70 0.00 38.71 2.82
2480 4716 3.204827 GTACCATGCCTGCCGCTG 61.205 66.667 0.00 0.00 38.78 5.18
2481 4717 4.489771 GGTACCATGCCTGCCGCT 62.490 66.667 7.15 0.00 38.78 5.52
2483 4719 2.514592 CTGGTACCATGCCTGCCG 60.515 66.667 16.75 0.00 0.00 5.69
2496 4732 1.349357 GAAACTTGAGGCTCTCCTGGT 59.651 52.381 16.72 4.55 44.46 4.00
2497 4733 1.627834 AGAAACTTGAGGCTCTCCTGG 59.372 52.381 16.72 3.94 44.46 4.45
2498 4734 2.697654 CAGAAACTTGAGGCTCTCCTG 58.302 52.381 16.72 9.41 44.46 3.86
2500 4736 1.271054 TGCAGAAACTTGAGGCTCTCC 60.271 52.381 16.72 0.00 0.00 3.71
2506 4742 2.746362 GTCCAGATGCAGAAACTTGAGG 59.254 50.000 0.00 0.00 0.00 3.86
2507 4743 3.672808 AGTCCAGATGCAGAAACTTGAG 58.327 45.455 0.00 0.00 0.00 3.02
2509 4745 4.843220 AAAGTCCAGATGCAGAAACTTG 57.157 40.909 0.00 0.00 0.00 3.16
2511 4747 5.376625 TGTAAAAGTCCAGATGCAGAAACT 58.623 37.500 0.00 0.00 0.00 2.66
2513 4749 6.294675 CCATTGTAAAAGTCCAGATGCAGAAA 60.295 38.462 0.00 0.00 0.00 2.52
2525 4761 3.188460 TGCGCTTCTCCATTGTAAAAGTC 59.812 43.478 9.73 0.00 0.00 3.01
2526 4762 3.146066 TGCGCTTCTCCATTGTAAAAGT 58.854 40.909 9.73 0.00 0.00 2.66
2527 4763 3.751621 CTGCGCTTCTCCATTGTAAAAG 58.248 45.455 9.73 0.00 0.00 2.27
2529 4765 1.468520 GCTGCGCTTCTCCATTGTAAA 59.531 47.619 9.73 0.00 0.00 2.01
2530 4766 1.086696 GCTGCGCTTCTCCATTGTAA 58.913 50.000 9.73 0.00 0.00 2.41
2532 4768 1.302752 TGCTGCGCTTCTCCATTGT 60.303 52.632 9.73 0.00 0.00 2.71
2533 4769 1.428219 CTGCTGCGCTTCTCCATTG 59.572 57.895 9.73 0.00 0.00 2.82
2535 4771 2.823147 GCTGCTGCGCTTCTCCAT 60.823 61.111 9.73 0.00 0.00 3.41
2585 4932 3.755378 ACATTCACTTGATCCTCAACAGC 59.245 43.478 0.00 0.00 32.21 4.40
2589 4936 3.753815 TGCACATTCACTTGATCCTCAA 58.246 40.909 0.00 0.00 34.79 3.02
2590 4937 3.340928 CTGCACATTCACTTGATCCTCA 58.659 45.455 0.00 0.00 0.00 3.86
2594 4941 1.747355 CCCCTGCACATTCACTTGATC 59.253 52.381 0.00 0.00 0.00 2.92
2604 4951 2.360350 CAGCGTTCCCCTGCACAT 60.360 61.111 0.00 0.00 0.00 3.21
2608 4955 4.329545 TCCACAGCGTTCCCCTGC 62.330 66.667 0.00 0.00 33.65 4.85
2639 5001 3.201045 GGCATCCCCTATTCCTAATCCTC 59.799 52.174 0.00 0.00 0.00 3.71
2644 5006 3.394606 GACAAGGCATCCCCTATTCCTAA 59.605 47.826 0.00 0.00 45.62 2.69
2665 5029 1.496857 TCCCAATGACACAACCCAAGA 59.503 47.619 0.00 0.00 0.00 3.02
2672 5036 3.054875 CAGGAGAGATCCCAATGACACAA 60.055 47.826 0.00 0.00 0.00 3.33
2782 5146 4.702831 ACCAAACAAAACCAAGCCAATAG 58.297 39.130 0.00 0.00 0.00 1.73
2908 5313 2.009042 GCACGCAAGAGATAACAGCCT 61.009 52.381 0.00 0.00 43.62 4.58
2909 5314 0.375106 GCACGCAAGAGATAACAGCC 59.625 55.000 0.00 0.00 43.62 4.85
2910 5315 1.061711 CAGCACGCAAGAGATAACAGC 59.938 52.381 0.00 0.00 43.62 4.40
2911 5316 2.610433 TCAGCACGCAAGAGATAACAG 58.390 47.619 0.00 0.00 43.62 3.16
2935 5341 4.223556 TGTATGGGATGCCGTAAAAGAA 57.776 40.909 6.78 0.00 0.00 2.52
2959 5365 6.573664 AGATGTGCACAAATAAGCAAGTAA 57.426 33.333 25.72 0.00 43.20 2.24
2964 5370 2.159531 GCGAGATGTGCACAAATAAGCA 60.160 45.455 25.72 0.00 38.65 3.91
2965 5371 2.096496 AGCGAGATGTGCACAAATAAGC 59.904 45.455 25.72 23.21 33.85 3.09
3029 5435 0.796312 ACGTGCACTAATTCAAGGCG 59.204 50.000 16.19 0.00 0.00 5.52
3044 5450 2.094659 CCTAGACAGCCGCAACGTG 61.095 63.158 0.00 0.00 0.00 4.49
3049 5455 4.715130 ACCCCCTAGACAGCCGCA 62.715 66.667 0.00 0.00 0.00 5.69
3050 5456 4.162690 CACCCCCTAGACAGCCGC 62.163 72.222 0.00 0.00 0.00 6.53
3052 5458 0.181350 CAATCACCCCCTAGACAGCC 59.819 60.000 0.00 0.00 0.00 4.85
3054 5460 2.432510 GAGACAATCACCCCCTAGACAG 59.567 54.545 0.00 0.00 0.00 3.51
3056 5462 2.696187 GAGAGACAATCACCCCCTAGAC 59.304 54.545 0.00 0.00 0.00 2.59
3057 5463 2.687014 CGAGAGACAATCACCCCCTAGA 60.687 54.545 0.00 0.00 0.00 2.43
3059 5465 1.688311 CCGAGAGACAATCACCCCCTA 60.688 57.143 0.00 0.00 0.00 3.53
3060 5466 0.978146 CCGAGAGACAATCACCCCCT 60.978 60.000 0.00 0.00 0.00 4.79
3061 5467 1.522569 CCGAGAGACAATCACCCCC 59.477 63.158 0.00 0.00 0.00 5.40
3062 5468 1.153349 GCCGAGAGACAATCACCCC 60.153 63.158 0.00 0.00 0.00 4.95
3065 5471 1.203928 CATCGCCGAGAGACAATCAC 58.796 55.000 0.00 0.00 0.00 3.06
3067 5473 1.218230 GGCATCGCCGAGAGACAATC 61.218 60.000 0.00 0.00 39.62 2.67
3068 5474 1.227380 GGCATCGCCGAGAGACAAT 60.227 57.895 0.00 0.00 39.62 2.71
3104 5600 3.708220 GAGAGAGGGCGACGCTTGG 62.708 68.421 20.77 0.00 0.00 3.61
3105 5601 2.202676 GAGAGAGGGCGACGCTTG 60.203 66.667 20.77 0.00 0.00 4.01
3106 5602 3.816524 CGAGAGAGGGCGACGCTT 61.817 66.667 20.77 8.51 0.00 4.68
3114 5610 4.292178 GGCATCGCCGAGAGAGGG 62.292 72.222 0.00 0.00 39.62 4.30
3137 5633 4.043200 GCTTGGCAAGACGGTGGC 62.043 66.667 30.45 10.51 44.09 5.01
3138 5634 3.726517 CGCTTGGCAAGACGGTGG 61.727 66.667 30.45 3.59 0.00 4.61
3139 5635 2.954753 GACGCTTGGCAAGACGGTG 61.955 63.158 31.75 18.12 34.10 4.94
3140 5636 2.665185 GACGCTTGGCAAGACGGT 60.665 61.111 31.75 24.66 34.10 4.83
3141 5637 3.777925 CGACGCTTGGCAAGACGG 61.778 66.667 31.75 22.40 34.10 4.79
3142 5638 4.430423 GCGACGCTTGGCAAGACG 62.430 66.667 30.45 29.67 35.30 4.18
3143 5639 4.090057 GGCGACGCTTGGCAAGAC 62.090 66.667 30.45 19.28 0.00 3.01
3180 5676 4.688419 CCGTTGCGCCACTGCTTG 62.688 66.667 10.16 0.00 35.36 4.01
3197 5693 2.659897 CTATGCCCTCTCGTGCGC 60.660 66.667 0.00 0.00 0.00 6.09
3212 5708 2.966732 CGGGAGCCAAAGGGTGCTA 61.967 63.158 6.70 0.00 41.25 3.49
3284 5780 9.794685 TGCGCAAATATGTCAATTTAATCTAAA 57.205 25.926 8.16 0.00 0.00 1.85
3285 5781 9.232082 GTGCGCAAATATGTCAATTTAATCTAA 57.768 29.630 14.00 0.00 0.00 2.10
3286 5782 8.620416 AGTGCGCAAATATGTCAATTTAATCTA 58.380 29.630 14.00 0.00 0.00 1.98
3287 5783 7.483307 AGTGCGCAAATATGTCAATTTAATCT 58.517 30.769 14.00 0.00 0.00 2.40
3288 5784 7.684062 AGTGCGCAAATATGTCAATTTAATC 57.316 32.000 14.00 0.00 0.00 1.75
3289 5785 8.405531 ACTAGTGCGCAAATATGTCAATTTAAT 58.594 29.630 14.00 0.00 0.00 1.40
3290 5786 7.757526 ACTAGTGCGCAAATATGTCAATTTAA 58.242 30.769 14.00 0.00 0.00 1.52
3291 5787 7.315247 ACTAGTGCGCAAATATGTCAATTTA 57.685 32.000 14.00 0.00 0.00 1.40
3292 5788 6.194796 ACTAGTGCGCAAATATGTCAATTT 57.805 33.333 14.00 0.00 0.00 1.82
3293 5789 5.818136 ACTAGTGCGCAAATATGTCAATT 57.182 34.783 14.00 0.00 0.00 2.32
3294 5790 8.777865 ATATACTAGTGCGCAAATATGTCAAT 57.222 30.769 14.00 0.00 0.00 2.57
3295 5791 9.699703 TTATATACTAGTGCGCAAATATGTCAA 57.300 29.630 14.00 0.00 0.00 3.18
3296 5792 9.699703 TTTATATACTAGTGCGCAAATATGTCA 57.300 29.630 14.00 0.00 0.00 3.58
3303 5799 9.710979 GTGAAAATTTATATACTAGTGCGCAAA 57.289 29.630 14.00 1.70 0.00 3.68
3304 5800 8.884726 TGTGAAAATTTATATACTAGTGCGCAA 58.115 29.630 14.00 0.00 0.00 4.85
3305 5801 8.426881 TGTGAAAATTTATATACTAGTGCGCA 57.573 30.769 5.66 5.66 0.00 6.09
3306 5802 9.710979 TTTGTGAAAATTTATATACTAGTGCGC 57.289 29.630 5.39 0.00 0.00 6.09
3335 5831 3.365520 GTCTTTTTCGCACGTTGGTTTTT 59.634 39.130 0.00 0.00 0.00 1.94
3336 5832 2.918600 GTCTTTTTCGCACGTTGGTTTT 59.081 40.909 0.00 0.00 0.00 2.43
3337 5833 2.095161 TGTCTTTTTCGCACGTTGGTTT 60.095 40.909 0.00 0.00 0.00 3.27
3338 5834 1.469308 TGTCTTTTTCGCACGTTGGTT 59.531 42.857 0.00 0.00 0.00 3.67
3339 5835 1.088306 TGTCTTTTTCGCACGTTGGT 58.912 45.000 0.00 0.00 0.00 3.67
3340 5836 2.181426 TTGTCTTTTTCGCACGTTGG 57.819 45.000 0.00 0.00 0.00 3.77
3341 5837 4.753516 ATTTTGTCTTTTTCGCACGTTG 57.246 36.364 0.00 0.00 0.00 4.10
3342 5838 5.771602 AAATTTTGTCTTTTTCGCACGTT 57.228 30.435 0.00 0.00 0.00 3.99
3343 5839 7.458038 AATAAATTTTGTCTTTTTCGCACGT 57.542 28.000 0.00 0.00 0.00 4.49
3344 5840 7.149524 GCAAATAAATTTTGTCTTTTTCGCACG 60.150 33.333 0.00 0.00 0.00 5.34
3345 5841 7.850492 AGCAAATAAATTTTGTCTTTTTCGCAC 59.150 29.630 0.00 0.00 0.00 5.34
3346 5842 7.914465 AGCAAATAAATTTTGTCTTTTTCGCA 58.086 26.923 0.00 0.00 0.00 5.10
3365 5861 9.726438 GGTGAATAGTGACCTATAATAGCAAAT 57.274 33.333 0.00 0.00 32.57 2.32
3366 5862 8.154856 GGGTGAATAGTGACCTATAATAGCAAA 58.845 37.037 0.00 0.00 32.57 3.68
3367 5863 7.512746 AGGGTGAATAGTGACCTATAATAGCAA 59.487 37.037 0.00 0.00 32.57 3.91
3368 5864 7.016914 AGGGTGAATAGTGACCTATAATAGCA 58.983 38.462 0.00 0.00 32.57 3.49
3369 5865 7.483580 AGGGTGAATAGTGACCTATAATAGC 57.516 40.000 0.00 0.00 32.57 2.97
3374 5870 9.442062 TCAAAATAGGGTGAATAGTGACCTATA 57.558 33.333 0.00 0.00 42.17 1.31
3375 5871 8.211629 GTCAAAATAGGGTGAATAGTGACCTAT 58.788 37.037 0.00 0.00 44.23 2.57
3376 5872 7.365295 GGTCAAAATAGGGTGAATAGTGACCTA 60.365 40.741 10.91 0.00 45.82 3.08
3377 5873 6.415573 GTCAAAATAGGGTGAATAGTGACCT 58.584 40.000 0.00 0.00 35.37 3.85
3378 5874 5.589050 GGTCAAAATAGGGTGAATAGTGACC 59.411 44.000 3.47 3.47 43.97 4.02
3379 5875 5.293569 CGGTCAAAATAGGGTGAATAGTGAC 59.706 44.000 0.00 0.00 33.70 3.67
3380 5876 5.188163 TCGGTCAAAATAGGGTGAATAGTGA 59.812 40.000 0.00 0.00 0.00 3.41
3381 5877 5.424757 TCGGTCAAAATAGGGTGAATAGTG 58.575 41.667 0.00 0.00 0.00 2.74
3382 5878 5.687166 TCGGTCAAAATAGGGTGAATAGT 57.313 39.130 0.00 0.00 0.00 2.12
3383 5879 6.995511 TTTCGGTCAAAATAGGGTGAATAG 57.004 37.500 0.00 0.00 0.00 1.73
3384 5880 7.948034 ATTTTCGGTCAAAATAGGGTGAATA 57.052 32.000 0.00 0.00 42.02 1.75
3385 5881 6.850752 ATTTTCGGTCAAAATAGGGTGAAT 57.149 33.333 0.00 0.00 42.02 2.57
3386 5882 6.658188 AATTTTCGGTCAAAATAGGGTGAA 57.342 33.333 0.00 0.00 42.86 3.18
3387 5883 6.041069 ACAAATTTTCGGTCAAAATAGGGTGA 59.959 34.615 0.00 0.00 42.86 4.02
3388 5884 6.220201 ACAAATTTTCGGTCAAAATAGGGTG 58.780 36.000 0.00 0.00 42.86 4.61
3389 5885 6.266786 AGACAAATTTTCGGTCAAAATAGGGT 59.733 34.615 9.15 0.00 42.86 4.34
3390 5886 6.687604 AGACAAATTTTCGGTCAAAATAGGG 58.312 36.000 9.15 0.00 42.86 3.53
3391 5887 8.587952 AAAGACAAATTTTCGGTCAAAATAGG 57.412 30.769 9.15 0.00 42.86 2.57
3416 5912 8.977412 ACTCCTCTTTGACTTATTTTCCAAAAA 58.023 29.630 0.00 0.00 0.00 1.94
3417 5913 8.533569 ACTCCTCTTTGACTTATTTTCCAAAA 57.466 30.769 0.00 0.00 0.00 2.44
3418 5914 9.807921 ATACTCCTCTTTGACTTATTTTCCAAA 57.192 29.630 0.00 0.00 0.00 3.28
3419 5915 9.807921 AATACTCCTCTTTGACTTATTTTCCAA 57.192 29.630 0.00 0.00 0.00 3.53
3420 5916 9.449719 GAATACTCCTCTTTGACTTATTTTCCA 57.550 33.333 0.00 0.00 0.00 3.53
3421 5917 9.674068 AGAATACTCCTCTTTGACTTATTTTCC 57.326 33.333 0.00 0.00 0.00 3.13
3427 5923 9.847224 ACAAAAAGAATACTCCTCTTTGACTTA 57.153 29.630 0.00 0.00 41.24 2.24
3428 5924 8.624776 CACAAAAAGAATACTCCTCTTTGACTT 58.375 33.333 0.00 0.00 41.24 3.01
3429 5925 7.993183 TCACAAAAAGAATACTCCTCTTTGACT 59.007 33.333 0.00 0.00 41.24 3.41
3430 5926 8.154649 TCACAAAAAGAATACTCCTCTTTGAC 57.845 34.615 0.00 0.00 41.24 3.18
3431 5927 8.746052 TTCACAAAAAGAATACTCCTCTTTGA 57.254 30.769 0.00 0.00 41.24 2.69
3432 5928 9.237846 GTTTCACAAAAAGAATACTCCTCTTTG 57.762 33.333 0.00 0.00 41.24 2.77
3433 5929 9.190317 AGTTTCACAAAAAGAATACTCCTCTTT 57.810 29.630 0.00 0.00 43.38 2.52
3434 5930 8.753497 AGTTTCACAAAAAGAATACTCCTCTT 57.247 30.769 0.00 0.00 34.56 2.85
3435 5931 8.753497 AAGTTTCACAAAAAGAATACTCCTCT 57.247 30.769 0.00 0.00 0.00 3.69
3436 5932 9.803315 AAAAGTTTCACAAAAAGAATACTCCTC 57.197 29.630 0.00 0.00 0.00 3.71
3437 5933 9.803315 GAAAAGTTTCACAAAAAGAATACTCCT 57.197 29.630 0.00 0.00 37.15 3.69
3438 5934 9.803315 AGAAAAGTTTCACAAAAAGAATACTCC 57.197 29.630 6.56 0.00 39.61 3.85
3442 5938 9.581099 GGTGAGAAAAGTTTCACAAAAAGAATA 57.419 29.630 8.13 0.00 44.23 1.75
3443 5939 8.093927 TGGTGAGAAAAGTTTCACAAAAAGAAT 58.906 29.630 8.13 0.00 44.23 2.40
3444 5940 7.437748 TGGTGAGAAAAGTTTCACAAAAAGAA 58.562 30.769 8.13 0.00 44.23 2.52
3445 5941 6.987386 TGGTGAGAAAAGTTTCACAAAAAGA 58.013 32.000 8.13 0.00 44.23 2.52
3446 5942 6.868339 ACTGGTGAGAAAAGTTTCACAAAAAG 59.132 34.615 8.13 6.53 44.23 2.27
3447 5943 6.754193 ACTGGTGAGAAAAGTTTCACAAAAA 58.246 32.000 8.13 0.00 44.23 1.94
3448 5944 6.339587 ACTGGTGAGAAAAGTTTCACAAAA 57.660 33.333 8.13 0.00 44.23 2.44
3449 5945 5.975693 ACTGGTGAGAAAAGTTTCACAAA 57.024 34.783 8.13 0.00 44.23 2.83
3450 5946 5.941058 TGTACTGGTGAGAAAAGTTTCACAA 59.059 36.000 8.13 0.00 44.23 3.33
3451 5947 5.492895 TGTACTGGTGAGAAAAGTTTCACA 58.507 37.500 8.13 3.47 44.23 3.58
3452 5948 6.431198 TTGTACTGGTGAGAAAAGTTTCAC 57.569 37.500 6.56 0.87 42.25 3.18
3453 5949 6.826231 TCATTGTACTGGTGAGAAAAGTTTCA 59.174 34.615 6.56 0.00 39.61 2.69
3454 5950 7.259290 TCATTGTACTGGTGAGAAAAGTTTC 57.741 36.000 0.00 0.00 37.45 2.78
3455 5951 7.639113 TTCATTGTACTGGTGAGAAAAGTTT 57.361 32.000 0.00 0.00 0.00 2.66
3456 5952 7.201821 CCTTTCATTGTACTGGTGAGAAAAGTT 60.202 37.037 0.00 0.00 0.00 2.66
3457 5953 6.263168 CCTTTCATTGTACTGGTGAGAAAAGT 59.737 38.462 0.00 0.00 0.00 2.66
3458 5954 6.263168 ACCTTTCATTGTACTGGTGAGAAAAG 59.737 38.462 0.00 0.00 0.00 2.27
3459 5955 6.126409 ACCTTTCATTGTACTGGTGAGAAAA 58.874 36.000 0.00 0.00 0.00 2.29
3460 5956 5.690865 ACCTTTCATTGTACTGGTGAGAAA 58.309 37.500 0.00 0.00 0.00 2.52
3461 5957 5.163248 TGACCTTTCATTGTACTGGTGAGAA 60.163 40.000 0.00 0.00 0.00 2.87
3462 5958 4.346709 TGACCTTTCATTGTACTGGTGAGA 59.653 41.667 0.00 0.00 0.00 3.27
3463 5959 4.641396 TGACCTTTCATTGTACTGGTGAG 58.359 43.478 0.00 0.00 0.00 3.51
3464 5960 4.698201 TGACCTTTCATTGTACTGGTGA 57.302 40.909 0.00 0.00 0.00 4.02
3465 5961 4.821805 ACTTGACCTTTCATTGTACTGGTG 59.178 41.667 0.00 0.00 0.00 4.17
3466 5962 5.048846 ACTTGACCTTTCATTGTACTGGT 57.951 39.130 0.00 0.00 0.00 4.00
3467 5963 6.391227 AAACTTGACCTTTCATTGTACTGG 57.609 37.500 0.00 0.00 0.00 4.00
3468 5964 9.965824 AAATAAACTTGACCTTTCATTGTACTG 57.034 29.630 0.00 0.00 0.00 2.74
3470 5966 9.959749 TGAAATAAACTTGACCTTTCATTGTAC 57.040 29.630 0.00 0.00 32.52 2.90
3472 5968 9.883142 TTTGAAATAAACTTGACCTTTCATTGT 57.117 25.926 0.00 0.00 36.17 2.71
3517 6013 9.429359 TCTTTTTAGCAATTCAACAAAAAGTCA 57.571 25.926 14.15 0.00 42.57 3.41
3523 6019 9.388506 TGGAATTCTTTTTAGCAATTCAACAAA 57.611 25.926 5.23 0.00 37.98 2.83
3524 6020 8.954950 TGGAATTCTTTTTAGCAATTCAACAA 57.045 26.923 5.23 0.00 37.98 2.83
3531 6027 9.660544 ACCCTATATGGAATTCTTTTTAGCAAT 57.339 29.630 5.23 0.00 38.35 3.56
3533 6029 9.569122 GTACCCTATATGGAATTCTTTTTAGCA 57.431 33.333 5.23 0.00 38.35 3.49
3534 6030 9.569122 TGTACCCTATATGGAATTCTTTTTAGC 57.431 33.333 5.23 0.00 38.35 3.09
3557 6053 4.680172 CGTTTGGTTCCGGGTACATATGTA 60.680 45.833 11.62 11.62 0.00 2.29
3558 6054 3.613030 GTTTGGTTCCGGGTACATATGT 58.387 45.455 13.93 13.93 0.00 2.29
3559 6055 2.610374 CGTTTGGTTCCGGGTACATATG 59.390 50.000 0.00 0.00 0.00 1.78
3560 6056 2.420408 CCGTTTGGTTCCGGGTACATAT 60.420 50.000 0.00 0.00 40.54 1.78
3561 6057 1.066286 CCGTTTGGTTCCGGGTACATA 60.066 52.381 0.00 0.00 40.54 2.29
3562 6058 0.321830 CCGTTTGGTTCCGGGTACAT 60.322 55.000 0.00 0.00 40.54 2.29
3563 6059 1.071128 CCGTTTGGTTCCGGGTACA 59.929 57.895 0.00 0.00 40.54 2.90
3564 6060 3.970721 CCGTTTGGTTCCGGGTAC 58.029 61.111 0.00 0.00 40.54 3.34
3581 6077 4.416738 GCTGGTGCTGGAGGGGAC 62.417 72.222 0.00 0.00 36.03 4.46
3582 6078 4.980592 TGCTGGTGCTGGAGGGGA 62.981 66.667 0.00 0.00 40.48 4.81
3583 6079 4.421515 CTGCTGGTGCTGGAGGGG 62.422 72.222 0.00 0.00 40.48 4.79
3585 6081 4.340246 TGCTGCTGGTGCTGGAGG 62.340 66.667 0.00 0.00 40.48 4.30
3586 6082 2.746671 CTGCTGCTGGTGCTGGAG 60.747 66.667 0.00 2.69 46.01 3.86
3587 6083 1.556373 ATACTGCTGCTGGTGCTGGA 61.556 55.000 11.29 0.00 40.48 3.86
3588 6084 0.178767 TATACTGCTGCTGGTGCTGG 59.821 55.000 11.29 0.00 40.48 4.85
3589 6085 2.251409 ATATACTGCTGCTGGTGCTG 57.749 50.000 11.29 0.00 40.48 4.41
3590 6086 5.019470 TCTATATATACTGCTGCTGGTGCT 58.981 41.667 11.29 1.34 40.48 4.40
3591 6087 5.330455 TCTATATATACTGCTGCTGGTGC 57.670 43.478 11.29 0.00 40.20 5.01
3592 6088 5.654209 TCCTCTATATATACTGCTGCTGGTG 59.346 44.000 11.29 0.00 0.00 4.17
3593 6089 5.832221 TCCTCTATATATACTGCTGCTGGT 58.168 41.667 11.29 7.63 0.00 4.00
3594 6090 6.782082 TTCCTCTATATATACTGCTGCTGG 57.218 41.667 11.29 1.84 0.00 4.85
3595 6091 8.090831 TGTTTTCCTCTATATATACTGCTGCTG 58.909 37.037 4.89 4.89 0.00 4.41
3596 6092 8.195165 TGTTTTCCTCTATATATACTGCTGCT 57.805 34.615 0.00 0.00 0.00 4.24
3608 6104 9.947433 TTCGTTTTTCCTATGTTTTCCTCTATA 57.053 29.630 0.00 0.00 0.00 1.31
3609 6105 8.727910 GTTCGTTTTTCCTATGTTTTCCTCTAT 58.272 33.333 0.00 0.00 0.00 1.98
3610 6106 7.173735 GGTTCGTTTTTCCTATGTTTTCCTCTA 59.826 37.037 0.00 0.00 0.00 2.43
3611 6107 6.016527 GGTTCGTTTTTCCTATGTTTTCCTCT 60.017 38.462 0.00 0.00 0.00 3.69
3612 6108 6.016527 AGGTTCGTTTTTCCTATGTTTTCCTC 60.017 38.462 0.00 0.00 0.00 3.71
3613 6109 5.831525 AGGTTCGTTTTTCCTATGTTTTCCT 59.168 36.000 0.00 0.00 0.00 3.36
3614 6110 6.080648 AGGTTCGTTTTTCCTATGTTTTCC 57.919 37.500 0.00 0.00 0.00 3.13
3615 6111 5.849604 CGAGGTTCGTTTTTCCTATGTTTTC 59.150 40.000 0.00 0.00 34.72 2.29
3616 6112 5.278120 CCGAGGTTCGTTTTTCCTATGTTTT 60.278 40.000 0.00 0.00 38.40 2.43
3617 6113 4.214758 CCGAGGTTCGTTTTTCCTATGTTT 59.785 41.667 0.00 0.00 38.40 2.83
3618 6114 3.749609 CCGAGGTTCGTTTTTCCTATGTT 59.250 43.478 0.00 0.00 38.40 2.71
3619 6115 3.244318 ACCGAGGTTCGTTTTTCCTATGT 60.244 43.478 0.00 0.00 38.40 2.29
3620 6116 3.332034 ACCGAGGTTCGTTTTTCCTATG 58.668 45.455 0.00 0.00 38.40 2.23
3621 6117 3.690475 ACCGAGGTTCGTTTTTCCTAT 57.310 42.857 0.00 0.00 38.40 2.57
3622 6118 3.473923 AACCGAGGTTCGTTTTTCCTA 57.526 42.857 0.93 0.00 38.40 2.94
3623 6119 2.336945 AACCGAGGTTCGTTTTTCCT 57.663 45.000 0.93 0.00 38.40 3.36
3624 6120 3.133691 ACTAACCGAGGTTCGTTTTTCC 58.866 45.455 11.20 0.00 38.40 3.13
3625 6121 3.121227 CGACTAACCGAGGTTCGTTTTTC 60.121 47.826 11.20 0.00 38.40 2.29
3626 6122 2.796593 CGACTAACCGAGGTTCGTTTTT 59.203 45.455 11.20 0.00 38.40 1.94
3627 6123 2.397549 CGACTAACCGAGGTTCGTTTT 58.602 47.619 11.20 0.00 38.40 2.43
3628 6124 2.056094 CGACTAACCGAGGTTCGTTT 57.944 50.000 11.20 0.00 38.40 3.60
3629 6125 3.780925 CGACTAACCGAGGTTCGTT 57.219 52.632 11.20 0.00 38.40 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.