Multiple sequence alignment - TraesCS6B01G371600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G371600 chr6B 100.000 7221 0 0 1851 9071 645484138 645491358 0.000000e+00 13335
1 TraesCS6B01G371600 chr6B 100.000 1606 0 0 1 1606 645482288 645483893 0.000000e+00 2966
2 TraesCS6B01G371600 chr6A 95.170 6191 258 23 1919 8099 573482801 573488960 0.000000e+00 9738
3 TraesCS6B01G371600 chr6A 87.866 1228 90 25 392 1582 573481519 573482724 0.000000e+00 1387
4 TraesCS6B01G371600 chr6A 87.500 816 55 16 8092 8867 573488920 573489728 0.000000e+00 898
5 TraesCS6B01G371600 chr6A 86.532 297 27 11 1 295 573481009 573481294 1.900000e-81 315
6 TraesCS6B01G371600 chr6D 90.972 4486 269 51 4652 9065 428899338 428903759 0.000000e+00 5915
7 TraesCS6B01G371600 chr6D 89.677 2073 167 22 2214 4264 428897286 428899333 0.000000e+00 2599
8 TraesCS6B01G371600 chr6D 85.972 1219 96 30 415 1593 428895552 428896735 0.000000e+00 1234
9 TraesCS6B01G371600 chr6D 86.957 138 11 5 1851 1988 428896766 428896896 2.040000e-31 148
10 TraesCS6B01G371600 chr6D 89.109 101 7 2 1 97 428895451 428895551 1.240000e-23 122
11 TraesCS6B01G371600 chr6D 81.600 125 18 3 2000 2123 428897156 428897276 2.080000e-16 99


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G371600 chr6B 645482288 645491358 9070 False 8150.500000 13335 100.000000 1 9071 2 chr6B.!!$F1 9070
1 TraesCS6B01G371600 chr6A 573481009 573489728 8719 False 3084.500000 9738 89.267000 1 8867 4 chr6A.!!$F1 8866
2 TraesCS6B01G371600 chr6D 428895451 428903759 8308 False 1686.166667 5915 87.381167 1 9065 6 chr6D.!!$F1 9064

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
518 653 0.037605 CACGAGAACCACCACTACCC 60.038 60.000 0.00 0.00 0.00 3.69 F
847 991 0.107831 CGCTTTATCCATCCCCGGAA 59.892 55.000 0.73 0.00 38.95 4.30 F
908 1077 0.108329 AGATTACGTGGGCTCCAACG 60.108 55.000 13.88 13.88 34.18 4.10 F
930 1099 0.183492 CCTGCTATGCCTGGGCTTAA 59.817 55.000 13.05 0.00 42.51 1.85 F
1517 1690 0.798776 CCAACATCAGAAGACGCACC 59.201 55.000 0.00 0.00 0.00 5.01 F
1890 2071 1.068127 CCCAATGAAGCCTTGCTATGC 59.932 52.381 0.00 0.00 38.25 3.14 F
3254 3682 1.277557 AGTCCTGTCTCATGCTTCACC 59.722 52.381 0.00 0.00 0.00 4.02 F
3828 4272 1.464608 GCTTCTGTGCATGTTCGCTTA 59.535 47.619 0.00 0.00 0.00 3.09 F
3892 4336 1.812571 CCAACCATGTAGTCCAAGTGC 59.187 52.381 0.00 0.00 0.00 4.40 F
5103 5562 0.394565 GCAACTCTGACCAGTGACCT 59.605 55.000 6.14 0.00 0.00 3.85 F
7031 7496 0.608130 TCTCTGTTCGACCACCATGG 59.392 55.000 11.19 11.19 45.02 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2046 2471 0.389817 CCACTTCATCTCGTTCCGCA 60.390 55.000 0.00 0.00 0.00 5.69 R
2782 3209 2.025981 TGATAACCCACTGCTCTGCAAT 60.026 45.455 0.00 0.00 38.41 3.56 R
3046 3473 2.821969 CAAAGTTGGGCTAGCAAGACAT 59.178 45.455 18.24 1.33 29.10 3.06 R
3111 3539 8.858186 CGTATGAAGCTGATCTGTGATAAATAG 58.142 37.037 1.27 0.00 0.00 1.73 R
3499 3936 0.250513 AGCAGAGAAAAGTAGCCCGG 59.749 55.000 0.00 0.00 0.00 5.73 R
3739 4183 1.134280 AGTTCAGATTCCAGATGGCGG 60.134 52.381 0.00 0.00 34.44 6.13 R
4433 4879 0.108186 CCCTGCACGCATAGAAGTCA 60.108 55.000 0.00 0.00 0.00 3.41 R
5076 5535 1.279840 GTCAGAGTTGCGTGTTGGC 59.720 57.895 0.00 0.00 0.00 4.52 R
5752 6213 1.601759 GAGCCCAGCTGCTTCAACA 60.602 57.895 8.66 0.00 42.95 3.33 R
7098 7563 0.109781 CGCAACAACCTACACCATGC 60.110 55.000 0.00 0.00 0.00 4.06 R
8708 9246 0.180171 TACGTTCATCCTGCCCCATG 59.820 55.000 0.00 0.00 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 0.318360 TGACCGTCGTGTACTGCAAG 60.318 55.000 0.00 0.00 42.29 4.01
70 75 4.217767 TCGTGTACTGCAAGAGAGTAACAT 59.782 41.667 0.00 0.00 37.43 2.71
141 146 2.490903 AGAGGCTCGACTAAAACGCTAA 59.509 45.455 9.22 0.00 0.00 3.09
143 148 2.230750 AGGCTCGACTAAAACGCTAAGT 59.769 45.455 0.00 0.00 0.00 2.24
144 149 3.441572 AGGCTCGACTAAAACGCTAAGTA 59.558 43.478 0.00 0.00 0.00 2.24
171 177 4.681483 GCCACAAAGAAACATAACTGCTTC 59.319 41.667 0.00 0.00 0.00 3.86
176 182 4.640771 AGAAACATAACTGCTTCCTGGA 57.359 40.909 0.00 0.00 29.41 3.86
180 186 3.177228 ACATAACTGCTTCCTGGACTCT 58.823 45.455 0.00 0.00 0.00 3.24
187 193 1.807142 GCTTCCTGGACTCTTTTTCGG 59.193 52.381 0.00 0.00 0.00 4.30
197 203 8.148351 CCTGGACTCTTTTTCGGTATATTGATA 58.852 37.037 0.00 0.00 0.00 2.15
198 204 9.712305 CTGGACTCTTTTTCGGTATATTGATAT 57.288 33.333 0.00 0.00 0.00 1.63
199 205 9.706691 TGGACTCTTTTTCGGTATATTGATATC 57.293 33.333 0.00 0.00 0.00 1.63
202 208 8.365647 ACTCTTTTTCGGTATATTGATATCGGT 58.634 33.333 0.00 0.00 41.62 4.69
203 209 8.528917 TCTTTTTCGGTATATTGATATCGGTG 57.471 34.615 0.00 0.00 41.62 4.94
205 211 5.988310 TTCGGTATATTGATATCGGTGGT 57.012 39.130 0.00 0.00 41.62 4.16
208 214 7.268199 TCGGTATATTGATATCGGTGGTATC 57.732 40.000 0.00 0.00 41.62 2.24
209 215 6.263842 TCGGTATATTGATATCGGTGGTATCC 59.736 42.308 0.00 0.00 41.62 2.59
210 216 6.040054 CGGTATATTGATATCGGTGGTATCCA 59.960 42.308 0.00 0.00 38.31 3.41
211 217 7.417003 CGGTATATTGATATCGGTGGTATCCAA 60.417 40.741 0.00 0.00 38.31 3.53
212 218 8.429641 GGTATATTGATATCGGTGGTATCCAAT 58.570 37.037 0.00 0.00 34.18 3.16
213 219 9.832445 GTATATTGATATCGGTGGTATCCAATT 57.168 33.333 0.00 0.00 34.18 2.32
214 220 8.964476 ATATTGATATCGGTGGTATCCAATTC 57.036 34.615 0.00 0.00 34.18 2.17
221 227 3.708451 GGTGGTATCCAATTCCAACCTT 58.292 45.455 0.00 0.00 34.18 3.50
222 228 4.626771 CGGTGGTATCCAATTCCAACCTTA 60.627 45.833 0.00 0.00 34.26 2.69
227 233 7.444487 GTGGTATCCAATTCCAACCTTATAGTC 59.556 40.741 0.00 0.00 34.18 2.59
228 234 7.128109 TGGTATCCAATTCCAACCTTATAGTCA 59.872 37.037 0.00 0.00 0.00 3.41
249 255 6.880942 TCAATTTGATGACACAACTGATGA 57.119 33.333 0.00 0.00 0.00 2.92
250 256 7.457024 TCAATTTGATGACACAACTGATGAT 57.543 32.000 0.00 0.00 0.00 2.45
252 258 7.810759 TCAATTTGATGACACAACTGATGATTG 59.189 33.333 0.00 0.00 0.00 2.67
253 259 6.638096 TTTGATGACACAACTGATGATTGT 57.362 33.333 0.00 0.00 40.95 2.71
254 260 6.638096 TTGATGACACAACTGATGATTGTT 57.362 33.333 0.00 0.00 38.22 2.83
255 261 6.245115 TGATGACACAACTGATGATTGTTC 57.755 37.500 0.00 0.00 38.22 3.18
257 263 6.431852 TGATGACACAACTGATGATTGTTCAT 59.568 34.615 11.68 11.68 45.39 2.57
259 265 7.742556 TGACACAACTGATGATTGTTCATAA 57.257 32.000 0.00 0.00 42.73 1.90
260 266 8.164058 TGACACAACTGATGATTGTTCATAAA 57.836 30.769 0.00 0.00 42.73 1.40
261 267 8.628280 TGACACAACTGATGATTGTTCATAAAA 58.372 29.630 0.00 0.00 42.73 1.52
263 269 8.412456 ACACAACTGATGATTGTTCATAAAACA 58.588 29.630 0.00 0.00 42.73 2.83
264 270 8.908678 CACAACTGATGATTGTTCATAAAACAG 58.091 33.333 0.00 0.00 42.73 3.16
265 271 8.632679 ACAACTGATGATTGTTCATAAAACAGT 58.367 29.630 0.00 0.00 42.73 3.55
266 272 9.467258 CAACTGATGATTGTTCATAAAACAGTT 57.533 29.630 11.76 11.76 45.31 3.16
267 273 9.683069 AACTGATGATTGTTCATAAAACAGTTC 57.317 29.630 11.76 0.00 43.31 3.01
268 274 9.071276 ACTGATGATTGTTCATAAAACAGTTCT 57.929 29.630 0.00 0.00 42.73 3.01
270 276 9.288576 TGATGATTGTTCATAAAACAGTTCTCT 57.711 29.630 0.00 0.00 42.73 3.10
272 278 8.675705 TGATTGTTCATAAAACAGTTCTCTGA 57.324 30.769 2.17 0.00 43.76 3.27
274 280 6.861065 TGTTCATAAAACAGTTCTCTGACC 57.139 37.500 2.17 0.00 43.76 4.02
281 287 6.541111 AAAACAGTTCTCTGACCGTTAATC 57.459 37.500 2.17 0.00 43.76 1.75
283 289 3.833070 ACAGTTCTCTGACCGTTAATCCT 59.167 43.478 2.17 0.00 43.76 3.24
286 292 5.125739 CAGTTCTCTGACCGTTAATCCTACT 59.874 44.000 0.00 0.00 43.76 2.57
288 294 6.543100 AGTTCTCTGACCGTTAATCCTACTAG 59.457 42.308 0.00 0.00 0.00 2.57
295 301 6.660521 TGACCGTTAATCCTACTAGAACTGAA 59.339 38.462 0.00 0.00 0.00 3.02
296 302 7.177216 TGACCGTTAATCCTACTAGAACTGAAA 59.823 37.037 0.00 0.00 0.00 2.69
299 305 8.195436 CCGTTAATCCTACTAGAACTGAAATCA 58.805 37.037 0.00 0.00 0.00 2.57
302 308 9.601217 TTAATCCTACTAGAACTGAAATCAAGC 57.399 33.333 0.00 0.00 0.00 4.01
303 309 5.651530 TCCTACTAGAACTGAAATCAAGCG 58.348 41.667 0.00 0.00 0.00 4.68
304 310 4.268884 CCTACTAGAACTGAAATCAAGCGC 59.731 45.833 0.00 0.00 0.00 5.92
305 311 2.668457 ACTAGAACTGAAATCAAGCGCG 59.332 45.455 0.00 0.00 0.00 6.86
306 312 1.512926 AGAACTGAAATCAAGCGCGT 58.487 45.000 8.43 0.00 0.00 6.01
309 315 0.163788 ACTGAAATCAAGCGCGTTCG 59.836 50.000 8.43 0.00 39.07 3.95
320 326 2.629763 GCGTTCGCGTTGAAACCT 59.370 55.556 5.77 0.00 43.62 3.50
321 327 1.438222 GCGTTCGCGTTGAAACCTC 60.438 57.895 5.77 0.00 43.62 3.85
322 328 1.203313 CGTTCGCGTTGAAACCTCC 59.797 57.895 5.77 0.00 38.60 4.30
323 329 1.219522 CGTTCGCGTTGAAACCTCCT 61.220 55.000 5.77 0.00 38.60 3.69
324 330 0.511653 GTTCGCGTTGAAACCTCCTC 59.488 55.000 5.77 0.00 38.60 3.71
326 332 0.320374 TCGCGTTGAAACCTCCTCAT 59.680 50.000 5.77 0.00 0.00 2.90
327 333 1.156736 CGCGTTGAAACCTCCTCATT 58.843 50.000 0.00 0.00 0.00 2.57
328 334 1.135972 CGCGTTGAAACCTCCTCATTG 60.136 52.381 0.00 0.00 0.00 2.82
329 335 2.151202 GCGTTGAAACCTCCTCATTGA 58.849 47.619 0.00 0.00 0.00 2.57
330 336 2.095718 GCGTTGAAACCTCCTCATTGAC 60.096 50.000 0.00 0.00 0.00 3.18
331 337 3.138304 CGTTGAAACCTCCTCATTGACA 58.862 45.455 0.00 0.00 0.00 3.58
332 338 3.058914 CGTTGAAACCTCCTCATTGACAC 60.059 47.826 0.00 0.00 0.00 3.67
333 339 2.766313 TGAAACCTCCTCATTGACACG 58.234 47.619 0.00 0.00 0.00 4.49
334 340 1.464997 GAAACCTCCTCATTGACACGC 59.535 52.381 0.00 0.00 0.00 5.34
335 341 0.321653 AACCTCCTCATTGACACGCC 60.322 55.000 0.00 0.00 0.00 5.68
336 342 1.450312 CCTCCTCATTGACACGCCC 60.450 63.158 0.00 0.00 0.00 6.13
337 343 1.450312 CTCCTCATTGACACGCCCC 60.450 63.158 0.00 0.00 0.00 5.80
338 344 2.184020 CTCCTCATTGACACGCCCCA 62.184 60.000 0.00 0.00 0.00 4.96
339 345 1.746615 CCTCATTGACACGCCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
340 346 2.359850 TCATTGACACGCCCCAGC 60.360 61.111 0.00 0.00 0.00 4.85
341 347 2.672651 CATTGACACGCCCCAGCA 60.673 61.111 0.00 0.00 39.83 4.41
342 348 2.048023 CATTGACACGCCCCAGCAT 61.048 57.895 0.00 0.00 39.83 3.79
343 349 1.750399 ATTGACACGCCCCAGCATC 60.750 57.895 0.00 0.00 39.83 3.91
350 356 4.115199 GCCCCAGCATCGGTCCTT 62.115 66.667 0.00 0.00 39.53 3.36
352 358 1.452108 CCCCAGCATCGGTCCTTTC 60.452 63.158 0.00 0.00 0.00 2.62
353 359 1.299648 CCCAGCATCGGTCCTTTCA 59.700 57.895 0.00 0.00 0.00 2.69
354 360 0.322456 CCCAGCATCGGTCCTTTCAA 60.322 55.000 0.00 0.00 0.00 2.69
355 361 1.533625 CCAGCATCGGTCCTTTCAAA 58.466 50.000 0.00 0.00 0.00 2.69
356 362 2.094675 CCAGCATCGGTCCTTTCAAAT 58.905 47.619 0.00 0.00 0.00 2.32
357 363 2.493278 CCAGCATCGGTCCTTTCAAATT 59.507 45.455 0.00 0.00 0.00 1.82
359 365 3.191162 CAGCATCGGTCCTTTCAAATTCA 59.809 43.478 0.00 0.00 0.00 2.57
362 490 3.915437 TCGGTCCTTTCAAATTCAAGC 57.085 42.857 0.00 0.00 0.00 4.01
366 494 4.445385 CGGTCCTTTCAAATTCAAGCAAAG 59.555 41.667 0.00 0.00 0.00 2.77
373 501 5.528043 TCAAATTCAAGCAAAGCAAGGTA 57.472 34.783 0.00 0.00 0.00 3.08
378 506 3.287222 TCAAGCAAAGCAAGGTACACTT 58.713 40.909 0.00 0.00 41.00 3.16
379 507 3.699038 TCAAGCAAAGCAAGGTACACTTT 59.301 39.130 0.00 0.00 37.29 2.66
380 508 3.990318 AGCAAAGCAAGGTACACTTTC 57.010 42.857 0.00 0.00 37.29 2.62
381 509 3.287222 AGCAAAGCAAGGTACACTTTCA 58.713 40.909 0.00 0.00 37.29 2.69
384 512 4.601019 CAAAGCAAGGTACACTTTCACTG 58.399 43.478 0.00 0.00 37.29 3.66
386 514 4.357918 AGCAAGGTACACTTTCACTGAT 57.642 40.909 0.00 0.00 37.29 2.90
388 516 5.133221 AGCAAGGTACACTTTCACTGATTT 58.867 37.500 0.00 0.00 37.29 2.17
389 517 6.296026 AGCAAGGTACACTTTCACTGATTTA 58.704 36.000 0.00 0.00 37.29 1.40
390 518 6.204882 AGCAAGGTACACTTTCACTGATTTAC 59.795 38.462 0.00 0.00 37.29 2.01
398 532 5.120674 CACTTTCACTGATTTACTCGCATCA 59.879 40.000 0.00 0.00 0.00 3.07
399 533 5.877012 ACTTTCACTGATTTACTCGCATCAT 59.123 36.000 0.00 0.00 0.00 2.45
400 534 5.723492 TTCACTGATTTACTCGCATCATG 57.277 39.130 0.00 0.00 0.00 3.07
408 542 1.730501 ACTCGCATCATGAACCACAG 58.269 50.000 0.00 0.00 0.00 3.66
432 567 4.431416 AACATATTCCGGCAACCTCATA 57.569 40.909 0.00 0.00 0.00 2.15
434 569 4.134563 ACATATTCCGGCAACCTCATAAC 58.865 43.478 0.00 0.00 0.00 1.89
437 572 0.174845 TCCGGCAACCTCATAACTCG 59.825 55.000 0.00 0.00 0.00 4.18
438 573 0.174845 CCGGCAACCTCATAACTCGA 59.825 55.000 0.00 0.00 0.00 4.04
441 576 2.936498 CGGCAACCTCATAACTCGATTT 59.064 45.455 0.00 0.00 0.00 2.17
454 589 0.253044 TCGATTTGCCCCCTCTTCTG 59.747 55.000 0.00 0.00 0.00 3.02
458 593 3.574074 TTGCCCCCTCTTCTGCAGC 62.574 63.158 9.47 0.00 34.81 5.25
476 611 0.614697 GCCCCACCTTACCAATTGCT 60.615 55.000 0.00 0.00 0.00 3.91
479 614 2.241176 CCCCACCTTACCAATTGCTAGA 59.759 50.000 0.00 0.00 0.00 2.43
514 649 2.029073 CGCACGAGAACCACCACT 59.971 61.111 0.00 0.00 0.00 4.00
518 653 0.037605 CACGAGAACCACCACTACCC 60.038 60.000 0.00 0.00 0.00 3.69
519 654 1.214589 CGAGAACCACCACTACCCG 59.785 63.158 0.00 0.00 0.00 5.28
520 655 1.246056 CGAGAACCACCACTACCCGA 61.246 60.000 0.00 0.00 0.00 5.14
526 661 3.437795 ACCACTACCCGACGCGAG 61.438 66.667 15.93 6.19 0.00 5.03
537 672 1.548973 CGACGCGAGAAACAAGCAGT 61.549 55.000 15.93 0.00 0.00 4.40
547 682 3.068590 AGAAACAAGCAGTGAAACCATGG 59.931 43.478 11.19 11.19 37.80 3.66
551 686 2.176546 CAGTGAAACCATGGCGCG 59.823 61.111 13.04 0.00 37.80 6.86
779 921 4.418359 AGATAAACCCTAGCCTAGCCTAC 58.582 47.826 0.00 0.00 0.00 3.18
780 922 2.563039 AAACCCTAGCCTAGCCTACA 57.437 50.000 0.00 0.00 0.00 2.74
781 923 2.563039 AACCCTAGCCTAGCCTACAA 57.437 50.000 0.00 0.00 0.00 2.41
782 924 2.089600 ACCCTAGCCTAGCCTACAAG 57.910 55.000 0.00 0.00 0.00 3.16
783 925 1.343069 CCCTAGCCTAGCCTACAAGG 58.657 60.000 0.00 0.00 38.80 3.61
842 986 0.606673 GGGAGCGCTTTATCCATCCC 60.607 60.000 13.26 11.82 39.67 3.85
843 987 0.606673 GGAGCGCTTTATCCATCCCC 60.607 60.000 13.26 0.00 35.54 4.81
844 988 0.951040 GAGCGCTTTATCCATCCCCG 60.951 60.000 13.26 0.00 0.00 5.73
845 989 1.966451 GCGCTTTATCCATCCCCGG 60.966 63.158 0.00 0.00 0.00 5.73
846 990 1.752198 CGCTTTATCCATCCCCGGA 59.248 57.895 0.73 0.00 40.07 5.14
847 991 0.107831 CGCTTTATCCATCCCCGGAA 59.892 55.000 0.73 0.00 38.95 4.30
888 1057 2.034999 TTTGGGCCCGATGTGTCC 59.965 61.111 19.37 0.00 0.00 4.02
903 1072 0.535335 TGTCCAGATTACGTGGGCTC 59.465 55.000 0.00 0.00 40.63 4.70
907 1076 1.369625 CAGATTACGTGGGCTCCAAC 58.630 55.000 0.00 0.00 34.18 3.77
908 1077 0.108329 AGATTACGTGGGCTCCAACG 60.108 55.000 13.88 13.88 34.18 4.10
909 1078 1.078708 ATTACGTGGGCTCCAACGG 60.079 57.895 18.92 2.86 34.18 4.44
910 1079 2.530958 ATTACGTGGGCTCCAACGGG 62.531 60.000 18.92 0.00 34.18 5.28
917 1086 4.096003 GCTCCAACGGGCCTGCTA 62.096 66.667 12.89 0.00 0.00 3.49
918 1087 2.911143 CTCCAACGGGCCTGCTAT 59.089 61.111 12.89 0.00 0.00 2.97
919 1088 1.524621 CTCCAACGGGCCTGCTATG 60.525 63.158 12.89 8.60 0.00 2.23
920 1089 3.211963 CCAACGGGCCTGCTATGC 61.212 66.667 12.89 0.00 0.00 3.14
929 1098 1.839191 CCTGCTATGCCTGGGCTTA 59.161 57.895 13.05 9.70 42.51 3.09
930 1099 0.183492 CCTGCTATGCCTGGGCTTAA 59.817 55.000 13.05 0.00 42.51 1.85
941 1110 1.154430 TGGGCTTAAAGGTCCAGGTT 58.846 50.000 0.00 0.00 35.90 3.50
946 1115 2.814336 GCTTAAAGGTCCAGGTTGTCAG 59.186 50.000 0.00 0.00 0.00 3.51
1239 1412 1.003355 CCCGCTTTTCTCTGAGCCA 60.003 57.895 0.00 0.00 35.49 4.75
1260 1433 1.066454 GCAGGCGGTGTTTGTTTACTT 59.934 47.619 0.00 0.00 0.00 2.24
1261 1434 2.726633 CAGGCGGTGTTTGTTTACTTG 58.273 47.619 0.00 0.00 0.00 3.16
1449 1622 2.159099 TGCAGTTTAGTAGATCCGCCTG 60.159 50.000 0.00 0.00 0.00 4.85
1453 1626 3.890147 AGTTTAGTAGATCCGCCTGGTAG 59.110 47.826 0.00 0.00 36.30 3.18
1462 1635 1.298859 CCGCCTGGTAGTGTTTCAGC 61.299 60.000 0.00 0.00 0.00 4.26
1501 1674 1.152830 GACAACAAGGAGGGGCCAA 59.847 57.895 4.39 0.00 40.02 4.52
1517 1690 0.798776 CCAACATCAGAAGACGCACC 59.201 55.000 0.00 0.00 0.00 5.01
1539 1712 9.683069 GCACCAATTTAGTAATTTAGGATGATG 57.317 33.333 10.41 0.00 31.63 3.07
1881 2062 2.830370 CTCGGCCCCAATGAAGCC 60.830 66.667 0.00 3.78 43.53 4.35
1890 2071 1.068127 CCCAATGAAGCCTTGCTATGC 59.932 52.381 0.00 0.00 38.25 3.14
1894 2075 2.034104 TGAAGCCTTGCTATGCTCTG 57.966 50.000 0.00 0.00 38.25 3.35
1899 2080 2.092538 AGCCTTGCTATGCTCTGATGTT 60.093 45.455 0.00 0.00 36.99 2.71
1965 2146 7.121382 ACCTATGATTGGATTGAGAACACAAT 58.879 34.615 0.00 0.00 42.19 2.71
2270 2695 7.492669 GCTAGTTGCAGAATGTTCTTATGTCTA 59.507 37.037 0.00 0.00 42.31 2.59
2274 2699 6.291377 TGCAGAATGTTCTTATGTCTATCCC 58.709 40.000 0.00 0.00 39.31 3.85
2302 2727 6.588719 ATCCTAAATTACTGCTGTTTTGCA 57.411 33.333 0.09 0.00 41.05 4.08
2782 3209 2.959030 ACACACAGTCTCTGTTAGCTGA 59.041 45.455 0.00 0.00 42.59 4.26
2895 3322 6.639671 TTTATTCGTACAAATGCCAAATGC 57.360 33.333 0.00 0.00 41.77 3.56
3046 3473 7.402071 TCTTGCTACCTTTTCTCCCTATTTCTA 59.598 37.037 0.00 0.00 0.00 2.10
3081 3508 5.568624 GCCCAACTTTGTATGCCAAATTAGT 60.569 40.000 0.00 0.00 42.02 2.24
3111 3539 9.914131 AAGGAATTTCTTATAAGTGCACTTTTC 57.086 29.630 35.20 26.57 37.40 2.29
3138 3566 3.443099 TCACAGATCAGCTTCATACGG 57.557 47.619 0.00 0.00 0.00 4.02
3254 3682 1.277557 AGTCCTGTCTCATGCTTCACC 59.722 52.381 0.00 0.00 0.00 4.02
3264 3692 4.005650 CTCATGCTTCACCTGCTTTTCTA 58.994 43.478 0.00 0.00 0.00 2.10
3265 3693 4.397420 TCATGCTTCACCTGCTTTTCTAA 58.603 39.130 0.00 0.00 0.00 2.10
3267 3695 2.548057 TGCTTCACCTGCTTTTCTAACG 59.452 45.455 0.00 0.00 0.00 3.18
3338 3772 8.825667 TTTAAATGCTGATAAGTTTGGTTTCC 57.174 30.769 0.00 0.00 0.00 3.13
3499 3936 2.031360 GCATCTCCTTGCCATCTGC 58.969 57.895 0.00 0.00 36.60 4.26
3623 4060 4.925054 TGATTTGCTGCTTAATTTGTGCTC 59.075 37.500 0.00 0.00 0.00 4.26
3633 4070 5.801947 GCTTAATTTGTGCTCATAACAGTGG 59.198 40.000 0.00 0.00 0.00 4.00
3637 4074 6.892658 ATTTGTGCTCATAACAGTGGTTTA 57.107 33.333 0.00 0.00 38.45 2.01
3653 4090 8.234546 ACAGTGGTTTATTTGTTCTTTATAGCG 58.765 33.333 0.00 0.00 0.00 4.26
3659 4096 5.813080 ATTTGTTCTTTATAGCGTGGTCC 57.187 39.130 0.00 0.00 0.00 4.46
3660 4097 2.883574 TGTTCTTTATAGCGTGGTCCG 58.116 47.619 0.00 0.00 40.40 4.79
3666 4103 4.098349 TCTTTATAGCGTGGTCCGTTATGT 59.902 41.667 2.06 0.00 42.08 2.29
3739 4183 5.696270 GGTTGAGGTTGATTTCAATGTTTCC 59.304 40.000 0.00 0.00 38.24 3.13
3828 4272 1.464608 GCTTCTGTGCATGTTCGCTTA 59.535 47.619 0.00 0.00 0.00 3.09
3892 4336 1.812571 CCAACCATGTAGTCCAAGTGC 59.187 52.381 0.00 0.00 0.00 4.40
3943 4387 9.555727 TGTCTAACTTTCTTTACTTGCATTAGT 57.444 29.630 0.00 0.00 0.00 2.24
3977 4422 6.177610 TGTCTGATAAGGTTAACCACAATCC 58.822 40.000 26.26 12.40 38.89 3.01
4250 4696 4.036262 TCACACAGAACACTTTTGGTATGC 59.964 41.667 0.00 0.00 34.80 3.14
4337 4783 3.679389 AGTTTACTCCAACATCTGCAGG 58.321 45.455 15.13 0.36 0.00 4.85
4366 4812 8.818141 TTGCTTCGAGAATCCATTAGTAATAG 57.182 34.615 0.00 0.00 0.00 1.73
4388 4834 6.352016 AGTGATTACTCAGATGTGTGTCTT 57.648 37.500 0.27 0.00 32.65 3.01
4390 4836 7.896811 AGTGATTACTCAGATGTGTGTCTTAA 58.103 34.615 0.27 0.00 32.65 1.85
4391 4837 7.815068 AGTGATTACTCAGATGTGTGTCTTAAC 59.185 37.037 0.27 0.00 32.65 2.01
4414 4860 5.221581 ACAAATTCTGCTTTCTGATGCCTTT 60.222 36.000 1.69 0.00 0.00 3.11
4515 4961 5.609423 AGTTGCATTAAAAATGCTTGGACA 58.391 33.333 21.43 1.96 44.79 4.02
4530 4976 5.067153 TGCTTGGACATACAATATTTTCCCG 59.933 40.000 0.00 0.00 0.00 5.14
4662 5108 6.976934 AATTAGTGGGTGTGAAAACAAGAT 57.023 33.333 0.00 0.00 0.00 2.40
4749 5196 7.765695 TTTCTCATAAGGATTTTTGCTCTGT 57.234 32.000 0.00 0.00 0.00 3.41
4866 5313 7.444183 CCTTTTTATAGGACACAGTGTTGAGAA 59.556 37.037 7.86 0.00 37.50 2.87
4930 5378 9.407380 CAAGTATGATATATACCTCTCTCAGCT 57.593 37.037 0.00 0.00 0.00 4.24
5076 5535 7.621428 ATCTGTTGGATAGTGTTTCAAGATG 57.379 36.000 0.00 0.00 32.04 2.90
5099 5558 0.530650 ACACGCAACTCTGACCAGTG 60.531 55.000 0.00 0.00 0.00 3.66
5103 5562 0.394565 GCAACTCTGACCAGTGACCT 59.605 55.000 6.14 0.00 0.00 3.85
5151 5610 4.221703 CCAACTCTAGCTCTTCTCTTTGGA 59.778 45.833 0.00 0.00 34.14 3.53
5573 6034 4.414337 AGGATGACTTTGGAGCTGATAC 57.586 45.455 0.00 0.00 0.00 2.24
5655 6116 2.359214 TCGATCCTCACTTCTTCATCGG 59.641 50.000 0.00 0.00 35.08 4.18
5668 6129 6.768381 ACTTCTTCATCGGGATTCTAATTTCC 59.232 38.462 0.00 0.00 0.00 3.13
5669 6130 6.500589 TCTTCATCGGGATTCTAATTTCCT 57.499 37.500 0.00 0.00 32.34 3.36
5688 6149 5.677319 TCCTGTGAGTTTATGGTCCTAAG 57.323 43.478 0.00 0.00 0.00 2.18
5752 6213 1.346068 GAACTCTGCTGTTCCAGGTCT 59.654 52.381 6.56 0.00 40.10 3.85
6009 6471 1.885887 TCATGTTTTTCTCTTGCCGGG 59.114 47.619 2.18 0.00 0.00 5.73
6046 6508 7.706607 GCATATTTAAGGGGAAGTCACAAATTC 59.293 37.037 0.00 0.00 0.00 2.17
6049 6511 7.610580 TTTAAGGGGAAGTCACAAATTCAAT 57.389 32.000 0.00 0.00 0.00 2.57
6183 6645 6.459066 TGAAGAAGAGCAGTATATATGGCAC 58.541 40.000 10.16 5.12 0.00 5.01
6238 6700 4.330894 TCATCAAGACTGTTCAATCGATGC 59.669 41.667 0.00 0.00 31.30 3.91
6245 6707 3.438087 ACTGTTCAATCGATGCTGAAAGG 59.562 43.478 12.85 11.02 33.52 3.11
6258 6720 4.464008 TGCTGAAAGGATCAAACTCAACT 58.536 39.130 0.00 0.00 37.67 3.16
6260 6722 4.791974 CTGAAAGGATCAAACTCAACTGC 58.208 43.478 0.00 0.00 37.67 4.40
6492 6954 5.718146 TCTTCTATTGTGAAGTCTCTGCAG 58.282 41.667 7.63 7.63 42.76 4.41
6495 6957 2.160822 TTGTGAAGTCTCTGCAGAGC 57.839 50.000 34.48 27.98 41.80 4.09
6522 6984 5.655488 TCAGTTTTTGTGGTTGTGGTATTG 58.345 37.500 0.00 0.00 0.00 1.90
6531 6993 5.703592 TGTGGTTGTGGTATTGTATTCAGTC 59.296 40.000 0.00 0.00 0.00 3.51
6555 7017 6.265422 TCTCACTCATGTTACTGAGAACAAGA 59.735 38.462 15.13 10.06 44.48 3.02
6561 7023 8.315391 TCATGTTACTGAGAACAAGAAGAATG 57.685 34.615 0.00 0.00 42.39 2.67
6580 7042 3.140325 TGCTTGTTATAGGGCTATGGC 57.860 47.619 0.00 0.00 37.82 4.40
6585 7047 2.303022 TGTTATAGGGCTATGGCTGAGC 59.697 50.000 0.00 0.00 39.33 4.26
6615 7077 3.426159 CGTGTGGGCTTTTAGTTATGCTG 60.426 47.826 0.00 0.00 0.00 4.41
6637 7099 4.019411 TGCATATCTGGAAAAGTCAGGTCA 60.019 41.667 0.00 0.00 33.36 4.02
6651 7113 2.424601 TCAGGTCAATACTTCGGTACCG 59.575 50.000 28.66 28.66 41.35 4.02
6666 7131 2.124903 GTACCGATCAACCATAGCACG 58.875 52.381 0.00 0.00 0.00 5.34
6732 7197 9.120538 TCAGTAACTTGTGCTTTTCTTTTATCT 57.879 29.630 0.00 0.00 0.00 1.98
6773 7238 6.491403 ACACATTCTAAAGAAGCAGAACCAAT 59.509 34.615 0.00 0.00 37.48 3.16
6958 7423 7.413438 CGAGTGTGATTTATTTTTCTCTGGAGG 60.413 40.741 0.00 0.00 0.00 4.30
6994 7459 4.397103 GGCAATGGGTACAGGTTAGTTTAC 59.603 45.833 0.00 0.00 0.00 2.01
6995 7460 5.250982 GCAATGGGTACAGGTTAGTTTACT 58.749 41.667 0.00 0.00 0.00 2.24
6996 7461 6.408869 GCAATGGGTACAGGTTAGTTTACTA 58.591 40.000 0.00 0.00 0.00 1.82
6997 7462 6.880529 GCAATGGGTACAGGTTAGTTTACTAA 59.119 38.462 0.00 0.00 36.20 2.24
6998 7463 7.391275 GCAATGGGTACAGGTTAGTTTACTAAA 59.609 37.037 4.03 0.00 39.84 1.85
6999 7464 9.287373 CAATGGGTACAGGTTAGTTTACTAAAA 57.713 33.333 4.03 0.00 39.84 1.52
7031 7496 0.608130 TCTCTGTTCGACCACCATGG 59.392 55.000 11.19 11.19 45.02 3.66
7046 7511 4.080356 CCACCATGGTATCTTTTCTCCAGA 60.080 45.833 19.28 0.00 33.33 3.86
7078 7543 5.643379 TCATGGGAAGTGCTTATTTTCAC 57.357 39.130 0.00 0.00 0.00 3.18
7098 7563 2.234414 ACTGGCTAACAATTGGGCAATG 59.766 45.455 10.83 2.95 45.52 2.82
7099 7564 1.066286 TGGCTAACAATTGGGCAATGC 60.066 47.619 10.83 0.00 43.44 3.56
7101 7566 2.420408 GGCTAACAATTGGGCAATGCAT 60.420 45.455 10.83 0.00 36.68 3.96
7114 7579 2.029110 GCAATGCATGGTGTAGGTTGTT 60.029 45.455 0.00 0.00 0.00 2.83
7117 7582 0.109781 GCATGGTGTAGGTTGTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
7234 7699 7.987458 TCAACATAAAACTCTCTGAAGAAGTGT 59.013 33.333 0.00 0.00 0.00 3.55
7235 7700 8.616076 CAACATAAAACTCTCTGAAGAAGTGTT 58.384 33.333 0.00 0.00 0.00 3.32
7265 7730 9.014297 TCTCTCAATTTCTTTCAGATTTAACCC 57.986 33.333 0.00 0.00 0.00 4.11
7352 7817 3.094062 TATGGGTCGCCTCTGCTGC 62.094 63.158 0.00 0.00 34.43 5.25
7430 7895 1.744368 CAGCAATGGAGCAGCGTCT 60.744 57.895 0.00 0.00 36.85 4.18
7450 7915 4.153117 GTCTTGAACAGAATGATCGCACTT 59.847 41.667 0.00 0.00 41.28 3.16
7456 7921 0.659957 GAATGATCGCACTTCCCTGC 59.340 55.000 0.00 0.00 0.00 4.85
7466 7931 1.077858 CTTCCCTGCTTGCTCCCTC 60.078 63.158 0.00 0.00 0.00 4.30
7546 8011 2.479837 CACTTGTTTGTCTGGAGCGTA 58.520 47.619 0.00 0.00 0.00 4.42
7652 8117 2.290641 GGCGTCAGAATGTTTTCACTGT 59.709 45.455 0.00 0.00 37.40 3.55
7653 8118 3.243068 GGCGTCAGAATGTTTTCACTGTT 60.243 43.478 0.00 0.00 37.40 3.16
7654 8119 4.351192 GCGTCAGAATGTTTTCACTGTTT 58.649 39.130 0.00 0.00 37.40 2.83
7655 8120 4.204978 GCGTCAGAATGTTTTCACTGTTTG 59.795 41.667 0.00 0.00 37.40 2.93
7656 8121 5.331902 CGTCAGAATGTTTTCACTGTTTGT 58.668 37.500 0.00 0.00 37.40 2.83
7657 8122 5.227805 CGTCAGAATGTTTTCACTGTTTGTG 59.772 40.000 0.00 0.00 42.21 3.33
7658 8123 6.321717 GTCAGAATGTTTTCACTGTTTGTGA 58.678 36.000 0.00 0.00 45.40 3.58
7732 8197 4.683400 CGTTTCCCTATGCTTACATCTGGT 60.683 45.833 0.00 0.00 37.74 4.00
7735 8200 4.780815 TCCCTATGCTTACATCTGGTTTG 58.219 43.478 0.00 0.00 37.74 2.93
7742 8207 5.373222 TGCTTACATCTGGTTTGTTACTGT 58.627 37.500 0.00 0.00 0.00 3.55
7758 8223 6.741109 TGTTACTGTTATCTGACGAACTTCA 58.259 36.000 0.00 0.00 0.00 3.02
7760 8225 7.541091 TGTTACTGTTATCTGACGAACTTCATC 59.459 37.037 0.00 0.00 0.00 2.92
7827 8292 4.808077 CACATATGCTGGAGTGTTGATC 57.192 45.455 1.58 0.00 0.00 2.92
7919 8384 3.669354 GTCAGATTGACGGCTAGGG 57.331 57.895 0.00 0.00 37.67 3.53
7926 8391 1.061546 TTGACGGCTAGGGTTTCCTT 58.938 50.000 0.00 0.00 41.56 3.36
7986 8456 0.969149 AGCATCGTCTTGGTCACAGA 59.031 50.000 0.00 0.00 0.00 3.41
8089 8559 5.670485 AGACCAATCTTTTGTTTTGTTCCC 58.330 37.500 0.00 0.00 0.00 3.97
8129 8623 7.284518 TCTTTTTGTTTTGTTCCGACATTTC 57.715 32.000 0.00 0.00 35.29 2.17
8150 8647 0.985760 ACCGTATTTAGGCACCCACA 59.014 50.000 0.00 0.00 0.00 4.17
8160 8657 3.845781 AGGCACCCACAGTATAATCAG 57.154 47.619 0.00 0.00 0.00 2.90
8161 8658 3.384168 AGGCACCCACAGTATAATCAGA 58.616 45.455 0.00 0.00 0.00 3.27
8205 8702 7.776107 TCAATTCACAACCAAAAGAATGTGTA 58.224 30.769 4.86 0.00 42.80 2.90
8206 8703 8.420222 TCAATTCACAACCAAAAGAATGTGTAT 58.580 29.630 4.86 0.00 42.80 2.29
8207 8704 9.689976 CAATTCACAACCAAAAGAATGTGTATA 57.310 29.630 4.86 0.00 42.80 1.47
8208 8705 9.691362 AATTCACAACCAAAAGAATGTGTATAC 57.309 29.630 0.00 0.00 42.80 1.47
8253 8750 3.997021 CTCCTACTACCAAACAAGCACAG 59.003 47.826 0.00 0.00 0.00 3.66
8264 8764 5.809562 CCAAACAAGCACAGAAAACACATAA 59.190 36.000 0.00 0.00 0.00 1.90
8357 8857 1.670087 CGAGGATCACTGCGAACAACT 60.670 52.381 0.00 0.00 33.17 3.16
8434 8934 3.710722 CCCTGGCTCTGGCTCGTT 61.711 66.667 0.00 0.00 38.73 3.85
8441 8944 3.535629 CTCTGGCTCGTTGGTGGCA 62.536 63.158 0.00 0.00 39.51 4.92
8442 8945 3.357079 CTGGCTCGTTGGTGGCAC 61.357 66.667 9.70 9.70 37.31 5.01
8496 9005 2.582493 CCACCGGGGCTGCAAATTT 61.582 57.895 6.32 0.00 0.00 1.82
8511 9020 6.335471 TGCAAATTTGACAGAATCATCAGT 57.665 33.333 22.31 0.00 37.11 3.41
8513 9022 5.575606 GCAAATTTGACAGAATCATCAGTGG 59.424 40.000 22.31 0.00 37.11 4.00
8514 9023 4.978083 ATTTGACAGAATCATCAGTGGC 57.022 40.909 0.00 0.00 37.11 5.01
8548 9071 5.120830 CGACATAAGAAGAGAAAGTTGGTGG 59.879 44.000 0.00 0.00 0.00 4.61
8672 9210 1.874019 CGCCAACTCCGATCGTCAG 60.874 63.158 15.09 11.77 0.00 3.51
8684 9222 2.417379 CGATCGTCAGTGGAAACCTCAT 60.417 50.000 7.03 0.00 0.00 2.90
8701 9239 6.137794 ACCTCATCTCACACGAAACTATAG 57.862 41.667 0.00 0.00 0.00 1.31
8707 9245 4.106029 TCACACGAAACTATAGCAGTCC 57.894 45.455 0.00 0.00 36.04 3.85
8708 9246 3.119245 TCACACGAAACTATAGCAGTCCC 60.119 47.826 0.00 0.00 36.04 4.46
8722 9272 2.044280 TCCCATGGGGCAGGATGA 59.956 61.111 30.93 5.59 43.94 2.92
8736 9286 3.009723 CAGGATGAACGTACCTTTGCAT 58.990 45.455 0.00 0.00 39.69 3.96
8763 9313 1.750399 GACGGCCATGGAGTTGCAT 60.750 57.895 18.40 0.00 0.00 3.96
8798 9348 4.814294 GGCGAGCGTCCGGTTGAT 62.814 66.667 10.13 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 7.918562 GGTCTGAAACTATCTCATGTTACTCTC 59.081 40.741 0.00 0.00 0.00 3.20
70 75 3.095912 TCCGGGTCTGAAACTATCTCA 57.904 47.619 0.00 0.00 0.00 3.27
141 146 6.546034 AGTTATGTTTCTTTGTGGCTTGTACT 59.454 34.615 0.00 0.00 0.00 2.73
143 148 6.734137 CAGTTATGTTTCTTTGTGGCTTGTA 58.266 36.000 0.00 0.00 0.00 2.41
144 149 5.591099 CAGTTATGTTTCTTTGTGGCTTGT 58.409 37.500 0.00 0.00 0.00 3.16
171 177 6.346096 TCAATATACCGAAAAAGAGTCCAGG 58.654 40.000 0.00 0.00 0.00 4.45
176 182 8.365647 ACCGATATCAATATACCGAAAAAGAGT 58.634 33.333 3.12 0.00 0.00 3.24
180 186 7.218614 ACCACCGATATCAATATACCGAAAAA 58.781 34.615 3.12 0.00 0.00 1.94
187 193 9.832445 AATTGGATACCACCGATATCAATATAC 57.168 33.333 3.12 0.00 34.01 1.47
197 203 3.551846 GTTGGAATTGGATACCACCGAT 58.448 45.455 0.00 0.00 35.73 4.18
198 204 2.356330 GGTTGGAATTGGATACCACCGA 60.356 50.000 0.00 0.00 30.78 4.69
199 205 2.021457 GGTTGGAATTGGATACCACCG 58.979 52.381 0.00 0.00 30.78 4.94
202 208 7.128109 TGACTATAAGGTTGGAATTGGATACCA 59.872 37.037 0.00 0.00 0.00 3.25
203 209 7.514721 TGACTATAAGGTTGGAATTGGATACC 58.485 38.462 0.00 0.00 0.00 2.73
208 214 8.748412 TCAAATTGACTATAAGGTTGGAATTGG 58.252 33.333 0.00 0.00 0.00 3.16
211 217 9.699410 TCATCAAATTGACTATAAGGTTGGAAT 57.301 29.630 0.00 0.00 0.00 3.01
212 218 8.956426 GTCATCAAATTGACTATAAGGTTGGAA 58.044 33.333 0.00 0.00 42.22 3.53
213 219 8.106462 TGTCATCAAATTGACTATAAGGTTGGA 58.894 33.333 0.00 0.00 45.07 3.53
214 220 8.184192 GTGTCATCAAATTGACTATAAGGTTGG 58.816 37.037 0.00 0.00 45.07 3.77
221 227 9.671279 ATCAGTTGTGTCATCAAATTGACTATA 57.329 29.630 0.00 0.00 45.07 1.31
222 228 7.984422 TCAGTTGTGTCATCAAATTGACTAT 57.016 32.000 0.00 0.00 45.07 2.12
227 233 7.597369 ACAATCATCAGTTGTGTCATCAAATTG 59.403 33.333 0.00 0.00 38.31 2.32
228 234 7.663827 ACAATCATCAGTTGTGTCATCAAATT 58.336 30.769 0.00 0.00 38.31 1.82
246 252 9.288576 TCAGAGAACTGTTTTATGAACAATCAT 57.711 29.630 5.99 0.00 44.66 2.45
248 254 8.017946 GGTCAGAGAACTGTTTTATGAACAATC 58.982 37.037 16.07 2.87 43.81 2.67
249 255 7.307989 CGGTCAGAGAACTGTTTTATGAACAAT 60.308 37.037 19.46 0.00 43.81 2.71
250 256 6.018262 CGGTCAGAGAACTGTTTTATGAACAA 60.018 38.462 19.46 0.00 43.81 2.83
252 258 5.465724 ACGGTCAGAGAACTGTTTTATGAAC 59.534 40.000 12.23 12.23 43.81 3.18
253 259 5.607477 ACGGTCAGAGAACTGTTTTATGAA 58.393 37.500 9.56 0.00 43.81 2.57
254 260 5.209818 ACGGTCAGAGAACTGTTTTATGA 57.790 39.130 4.50 4.50 43.81 2.15
255 261 5.924475 AACGGTCAGAGAACTGTTTTATG 57.076 39.130 0.00 0.00 44.40 1.90
257 263 6.647895 GGATTAACGGTCAGAGAACTGTTTTA 59.352 38.462 6.56 0.00 44.40 1.52
259 265 4.995487 GGATTAACGGTCAGAGAACTGTTT 59.005 41.667 6.56 0.00 44.40 2.83
261 267 3.833070 AGGATTAACGGTCAGAGAACTGT 59.167 43.478 0.00 0.00 43.81 3.55
263 269 5.262804 AGTAGGATTAACGGTCAGAGAACT 58.737 41.667 0.00 0.00 0.00 3.01
264 270 5.579564 AGTAGGATTAACGGTCAGAGAAC 57.420 43.478 0.00 0.00 0.00 3.01
265 271 6.656902 TCTAGTAGGATTAACGGTCAGAGAA 58.343 40.000 0.00 0.00 0.00 2.87
266 272 6.244552 TCTAGTAGGATTAACGGTCAGAGA 57.755 41.667 0.00 0.00 0.00 3.10
267 273 6.543100 AGTTCTAGTAGGATTAACGGTCAGAG 59.457 42.308 0.00 0.00 0.00 3.35
268 274 6.318144 CAGTTCTAGTAGGATTAACGGTCAGA 59.682 42.308 0.00 0.00 0.00 3.27
270 276 6.182627 TCAGTTCTAGTAGGATTAACGGTCA 58.817 40.000 0.00 0.00 0.00 4.02
272 278 7.472334 TTTCAGTTCTAGTAGGATTAACGGT 57.528 36.000 0.00 0.00 0.00 4.83
274 280 9.582431 TTGATTTCAGTTCTAGTAGGATTAACG 57.418 33.333 0.00 0.00 0.00 3.18
281 287 4.268884 GCGCTTGATTTCAGTTCTAGTAGG 59.731 45.833 0.00 0.00 0.00 3.18
283 289 3.857665 CGCGCTTGATTTCAGTTCTAGTA 59.142 43.478 5.56 0.00 0.00 1.82
286 292 2.683968 ACGCGCTTGATTTCAGTTCTA 58.316 42.857 5.73 0.00 0.00 2.10
288 294 2.234187 GAACGCGCTTGATTTCAGTTC 58.766 47.619 5.73 4.49 0.00 3.01
303 309 1.438222 GAGGTTTCAACGCGAACGC 60.438 57.895 15.93 9.20 45.53 4.84
305 311 0.511653 GAGGAGGTTTCAACGCGAAC 59.488 55.000 15.93 6.47 31.73 3.95
306 312 0.105224 TGAGGAGGTTTCAACGCGAA 59.895 50.000 15.93 0.00 0.00 4.70
309 315 2.095718 GTCAATGAGGAGGTTTCAACGC 60.096 50.000 0.00 0.00 0.00 4.84
310 316 3.058914 GTGTCAATGAGGAGGTTTCAACG 60.059 47.826 0.00 0.00 0.00 4.10
311 317 3.058914 CGTGTCAATGAGGAGGTTTCAAC 60.059 47.826 0.00 0.00 0.00 3.18
312 318 3.138304 CGTGTCAATGAGGAGGTTTCAA 58.862 45.455 0.00 0.00 0.00 2.69
314 320 1.464997 GCGTGTCAATGAGGAGGTTTC 59.535 52.381 0.00 0.00 0.00 2.78
315 321 1.523758 GCGTGTCAATGAGGAGGTTT 58.476 50.000 0.00 0.00 0.00 3.27
317 323 1.296715 GGCGTGTCAATGAGGAGGT 59.703 57.895 0.00 0.00 0.00 3.85
318 324 1.450312 GGGCGTGTCAATGAGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
319 325 1.450312 GGGGCGTGTCAATGAGGAG 60.450 63.158 0.00 0.00 0.00 3.69
320 326 2.184020 CTGGGGCGTGTCAATGAGGA 62.184 60.000 0.00 0.00 0.00 3.71
321 327 1.746615 CTGGGGCGTGTCAATGAGG 60.747 63.158 0.00 0.00 0.00 3.86
322 328 2.401766 GCTGGGGCGTGTCAATGAG 61.402 63.158 0.00 0.00 0.00 2.90
323 329 2.359850 GCTGGGGCGTGTCAATGA 60.360 61.111 0.00 0.00 0.00 2.57
324 330 1.996786 GATGCTGGGGCGTGTCAATG 61.997 60.000 0.00 0.00 42.25 2.82
326 332 2.359850 GATGCTGGGGCGTGTCAA 60.360 61.111 0.00 0.00 42.25 3.18
327 333 4.758251 CGATGCTGGGGCGTGTCA 62.758 66.667 0.00 0.00 42.25 3.58
333 339 3.645268 AAAGGACCGATGCTGGGGC 62.645 63.158 0.00 0.00 39.26 5.80
334 340 1.452108 GAAAGGACCGATGCTGGGG 60.452 63.158 0.00 0.00 0.00 4.96
335 341 0.322456 TTGAAAGGACCGATGCTGGG 60.322 55.000 0.00 0.00 0.00 4.45
336 342 1.533625 TTTGAAAGGACCGATGCTGG 58.466 50.000 0.00 0.00 0.00 4.85
337 343 3.191162 TGAATTTGAAAGGACCGATGCTG 59.809 43.478 0.00 0.00 0.00 4.41
338 344 3.420893 TGAATTTGAAAGGACCGATGCT 58.579 40.909 0.00 0.00 0.00 3.79
339 345 3.848272 TGAATTTGAAAGGACCGATGC 57.152 42.857 0.00 0.00 0.00 3.91
340 346 4.168760 GCTTGAATTTGAAAGGACCGATG 58.831 43.478 0.00 0.00 0.00 3.84
341 347 3.826157 TGCTTGAATTTGAAAGGACCGAT 59.174 39.130 0.00 0.00 0.00 4.18
342 348 3.218453 TGCTTGAATTTGAAAGGACCGA 58.782 40.909 0.00 0.00 0.00 4.69
343 349 3.641437 TGCTTGAATTTGAAAGGACCG 57.359 42.857 0.00 0.00 0.00 4.79
345 351 4.810491 TGCTTTGCTTGAATTTGAAAGGAC 59.190 37.500 0.00 0.00 0.00 3.85
346 352 5.021033 TGCTTTGCTTGAATTTGAAAGGA 57.979 34.783 0.00 0.00 0.00 3.36
347 353 5.277634 CCTTGCTTTGCTTGAATTTGAAAGG 60.278 40.000 0.00 0.00 0.00 3.11
350 356 4.768583 ACCTTGCTTTGCTTGAATTTGAA 58.231 34.783 0.00 0.00 0.00 2.69
352 358 5.049167 TGTACCTTGCTTTGCTTGAATTTG 58.951 37.500 0.00 0.00 0.00 2.32
353 359 5.049828 GTGTACCTTGCTTTGCTTGAATTT 58.950 37.500 0.00 0.00 0.00 1.82
354 360 4.342092 AGTGTACCTTGCTTTGCTTGAATT 59.658 37.500 0.00 0.00 0.00 2.17
355 361 3.891366 AGTGTACCTTGCTTTGCTTGAAT 59.109 39.130 0.00 0.00 0.00 2.57
356 362 3.287222 AGTGTACCTTGCTTTGCTTGAA 58.713 40.909 0.00 0.00 0.00 2.69
357 363 2.930950 AGTGTACCTTGCTTTGCTTGA 58.069 42.857 0.00 0.00 0.00 3.02
359 365 3.699038 TGAAAGTGTACCTTGCTTTGCTT 59.301 39.130 6.57 0.00 33.22 3.91
362 490 4.335315 TCAGTGAAAGTGTACCTTGCTTTG 59.665 41.667 0.00 4.44 38.75 2.77
366 494 5.438761 AAATCAGTGAAAGTGTACCTTGC 57.561 39.130 0.00 0.00 38.75 4.01
373 501 4.377021 TGCGAGTAAATCAGTGAAAGTGT 58.623 39.130 0.00 0.00 38.75 3.55
378 506 5.418676 TCATGATGCGAGTAAATCAGTGAA 58.581 37.500 0.00 0.00 36.31 3.18
379 507 5.009854 TCATGATGCGAGTAAATCAGTGA 57.990 39.130 0.00 0.00 36.31 3.41
380 508 5.496387 GTTCATGATGCGAGTAAATCAGTG 58.504 41.667 0.00 0.00 36.31 3.66
381 509 4.572389 GGTTCATGATGCGAGTAAATCAGT 59.428 41.667 0.00 0.00 36.31 3.41
384 512 4.332543 TGTGGTTCATGATGCGAGTAAATC 59.667 41.667 0.00 0.00 0.00 2.17
386 514 3.669536 TGTGGTTCATGATGCGAGTAAA 58.330 40.909 0.00 0.00 0.00 2.01
388 516 2.495669 TCTGTGGTTCATGATGCGAGTA 59.504 45.455 0.00 0.00 0.00 2.59
389 517 1.276138 TCTGTGGTTCATGATGCGAGT 59.724 47.619 0.00 0.00 0.00 4.18
390 518 2.014335 TCTGTGGTTCATGATGCGAG 57.986 50.000 0.00 0.00 0.00 5.03
398 532 5.997746 CCGGAATATGTTATCTGTGGTTCAT 59.002 40.000 0.00 0.00 0.00 2.57
399 533 5.364778 CCGGAATATGTTATCTGTGGTTCA 58.635 41.667 0.00 0.00 0.00 3.18
400 534 4.213482 GCCGGAATATGTTATCTGTGGTTC 59.787 45.833 5.05 0.00 0.00 3.62
408 542 4.385825 TGAGGTTGCCGGAATATGTTATC 58.614 43.478 5.05 0.00 0.00 1.75
432 567 0.698818 AAGAGGGGGCAAATCGAGTT 59.301 50.000 0.00 0.00 0.00 3.01
434 569 0.543749 AGAAGAGGGGGCAAATCGAG 59.456 55.000 0.00 0.00 0.00 4.04
437 572 0.323725 TGCAGAAGAGGGGGCAAATC 60.324 55.000 0.00 0.00 32.54 2.17
438 573 0.324091 CTGCAGAAGAGGGGGCAAAT 60.324 55.000 8.42 0.00 35.59 2.32
441 576 4.039092 GCTGCAGAAGAGGGGGCA 62.039 66.667 20.43 0.00 34.66 5.36
454 589 0.614697 AATTGGTAAGGTGGGGCTGC 60.615 55.000 0.00 0.00 0.00 5.25
458 593 2.241176 TCTAGCAATTGGTAAGGTGGGG 59.759 50.000 17.45 5.36 0.00 4.96
476 611 4.689071 CGCCCTGTTACATGTGTATTCTA 58.311 43.478 9.11 0.00 0.00 2.10
479 614 2.014128 GCGCCCTGTTACATGTGTATT 58.986 47.619 9.11 0.00 0.00 1.89
514 649 0.387622 CTTGTTTCTCGCGTCGGGTA 60.388 55.000 5.77 0.00 0.00 3.69
518 653 1.128611 CTGCTTGTTTCTCGCGTCG 59.871 57.895 5.77 0.00 0.00 5.12
519 654 0.111089 CACTGCTTGTTTCTCGCGTC 60.111 55.000 5.77 0.00 0.00 5.19
520 655 0.529773 TCACTGCTTGTTTCTCGCGT 60.530 50.000 5.77 0.00 0.00 6.01
526 661 3.383761 CCATGGTTTCACTGCTTGTTTC 58.616 45.455 2.57 0.00 0.00 2.78
537 672 2.642129 CAACGCGCCATGGTTTCA 59.358 55.556 14.67 0.00 0.00 2.69
659 795 4.090588 CGGGAAGGTAGCGGCCAA 62.091 66.667 2.24 0.00 0.00 4.52
667 806 1.306397 GGGGTTCTCCGGGAAGGTA 60.306 63.158 0.00 0.00 41.99 3.08
668 807 2.609921 GGGGTTCTCCGGGAAGGT 60.610 66.667 0.00 0.00 41.99 3.50
779 921 2.093606 TCTGCTCTGCTCATCTTCCTTG 60.094 50.000 0.00 0.00 0.00 3.61
780 922 2.168936 CTCTGCTCTGCTCATCTTCCTT 59.831 50.000 0.00 0.00 0.00 3.36
781 923 1.758280 CTCTGCTCTGCTCATCTTCCT 59.242 52.381 0.00 0.00 0.00 3.36
782 924 1.807377 GCTCTGCTCTGCTCATCTTCC 60.807 57.143 0.00 0.00 0.00 3.46
783 925 1.134759 TGCTCTGCTCTGCTCATCTTC 60.135 52.381 0.00 0.00 0.00 2.87
842 986 1.452108 GGCCCATCAGAAGTTCCGG 60.452 63.158 0.00 0.00 0.00 5.14
843 987 1.815421 CGGCCCATCAGAAGTTCCG 60.815 63.158 0.00 0.00 0.00 4.30
844 988 2.115291 GCGGCCCATCAGAAGTTCC 61.115 63.158 0.00 0.00 0.00 3.62
845 989 1.372087 CTGCGGCCCATCAGAAGTTC 61.372 60.000 8.23 0.00 32.26 3.01
846 990 1.377725 CTGCGGCCCATCAGAAGTT 60.378 57.895 8.23 0.00 32.26 2.66
847 991 2.270205 CTGCGGCCCATCAGAAGT 59.730 61.111 8.23 0.00 32.26 3.01
888 1057 1.369625 GTTGGAGCCCACGTAATCTG 58.630 55.000 0.00 0.00 30.78 2.90
903 1072 3.211963 GCATAGCAGGCCCGTTGG 61.212 66.667 0.00 0.00 0.00 3.77
910 1079 2.343475 TAAGCCCAGGCATAGCAGGC 62.343 60.000 12.03 8.36 44.88 4.85
911 1080 0.183492 TTAAGCCCAGGCATAGCAGG 59.817 55.000 12.03 0.00 44.88 4.85
912 1081 1.952296 CTTTAAGCCCAGGCATAGCAG 59.048 52.381 12.03 0.08 44.88 4.24
913 1082 1.410083 CCTTTAAGCCCAGGCATAGCA 60.410 52.381 12.03 0.00 44.88 3.49
914 1083 1.322442 CCTTTAAGCCCAGGCATAGC 58.678 55.000 12.03 0.00 44.88 2.97
915 1084 2.576615 GACCTTTAAGCCCAGGCATAG 58.423 52.381 12.03 2.25 44.88 2.23
916 1085 1.214424 GGACCTTTAAGCCCAGGCATA 59.786 52.381 12.03 0.00 44.88 3.14
917 1086 0.033109 GGACCTTTAAGCCCAGGCAT 60.033 55.000 12.03 0.64 44.88 4.40
918 1087 1.382629 GGACCTTTAAGCCCAGGCA 59.617 57.895 12.03 0.00 44.88 4.75
919 1088 0.681243 CTGGACCTTTAAGCCCAGGC 60.681 60.000 17.81 0.00 41.76 4.85
920 1089 3.577389 CTGGACCTTTAAGCCCAGG 57.423 57.895 17.81 0.00 41.76 4.45
921 1090 0.698818 ACCTGGACCTTTAAGCCCAG 59.301 55.000 18.32 18.32 44.29 4.45
929 1098 0.846693 AGCTGACAACCTGGACCTTT 59.153 50.000 0.00 0.00 0.00 3.11
930 1099 0.398318 GAGCTGACAACCTGGACCTT 59.602 55.000 0.00 0.00 0.00 3.50
941 1110 1.185618 AGTTACGGGCTGAGCTGACA 61.186 55.000 3.72 0.00 0.00 3.58
946 1115 0.107654 ATCCAAGTTACGGGCTGAGC 60.108 55.000 0.00 0.00 0.00 4.26
1239 1412 0.666374 GTAAACAAACACCGCCTGCT 59.334 50.000 0.00 0.00 0.00 4.24
1449 1622 1.523758 CACTGGGCTGAAACACTACC 58.476 55.000 0.00 0.00 0.00 3.18
1501 1674 2.479566 ATTGGTGCGTCTTCTGATGT 57.520 45.000 0.00 0.00 0.00 3.06
1539 1712 6.458232 TCTAAGTGATTAGAGCTGAAGACC 57.542 41.667 0.00 0.00 0.00 3.85
1573 1754 9.037737 TCACAAATGTGTAAAACTAGTACTGAC 57.962 33.333 12.87 0.00 45.76 3.51
1881 2062 3.193263 ACGAACATCAGAGCATAGCAAG 58.807 45.455 0.00 0.00 0.00 4.01
1890 2071 4.142816 GGATTTGTTGGACGAACATCAGAG 60.143 45.833 3.72 0.00 44.23 3.35
1894 2075 5.873179 TTAGGATTTGTTGGACGAACATC 57.127 39.130 3.72 0.15 44.23 3.06
1899 2080 6.642707 ACAAAATTAGGATTTGTTGGACGA 57.357 33.333 0.00 0.00 45.97 4.20
1965 2146 7.851387 TTTCTATTGTACTTTGTGTGTGTCA 57.149 32.000 0.00 0.00 0.00 3.58
2046 2471 0.389817 CCACTTCATCTCGTTCCGCA 60.390 55.000 0.00 0.00 0.00 5.69
2169 2594 3.565482 ACTGTGTAAAACCAGCAGTGATG 59.435 43.478 0.08 0.08 38.74 3.07
2270 2695 6.774656 CAGCAGTAATTTAGGATTTGAGGGAT 59.225 38.462 0.00 0.00 0.00 3.85
2274 2699 9.132521 CAAAACAGCAGTAATTTAGGATTTGAG 57.867 33.333 0.00 0.00 0.00 3.02
2302 2727 9.950496 CTTGGGCTCACTATAACATTCTATAAT 57.050 33.333 0.00 0.00 0.00 1.28
2782 3209 2.025981 TGATAACCCACTGCTCTGCAAT 60.026 45.455 0.00 0.00 38.41 3.56
3046 3473 2.821969 CAAAGTTGGGCTAGCAAGACAT 59.178 45.455 18.24 1.33 29.10 3.06
3111 3539 8.858186 CGTATGAAGCTGATCTGTGATAAATAG 58.142 37.037 1.27 0.00 0.00 1.73
3138 3566 7.608761 TCCCAACATCACTAACTTATAACCAAC 59.391 37.037 0.00 0.00 0.00 3.77
3254 3682 5.118664 TCAAATCTCGTCGTTAGAAAAGCAG 59.881 40.000 0.00 0.00 0.00 4.24
3264 3692 7.770801 TCAATTATCATCAAATCTCGTCGTT 57.229 32.000 0.00 0.00 0.00 3.85
3265 3693 7.953158 ATCAATTATCATCAAATCTCGTCGT 57.047 32.000 0.00 0.00 0.00 4.34
3319 3753 4.155826 CGATGGAAACCAAACTTATCAGCA 59.844 41.667 0.00 0.00 36.95 4.41
3338 3772 1.645034 AATCGGTGCTTCAGACGATG 58.355 50.000 0.00 0.00 44.32 3.84
3434 3871 8.525316 TGTCGAAATTTGGTCTATCAGTTACTA 58.475 33.333 0.00 0.00 0.00 1.82
3436 3873 7.591006 TGTCGAAATTTGGTCTATCAGTTAC 57.409 36.000 0.00 0.00 0.00 2.50
3499 3936 0.250513 AGCAGAGAAAAGTAGCCCGG 59.749 55.000 0.00 0.00 0.00 5.73
3633 4070 7.695201 GGACCACGCTATAAAGAACAAATAAAC 59.305 37.037 0.00 0.00 0.00 2.01
3637 4074 4.331717 CGGACCACGCTATAAAGAACAAAT 59.668 41.667 0.00 0.00 34.82 2.32
3653 4090 3.135994 AGTTCAACACATAACGGACCAC 58.864 45.455 0.00 0.00 0.00 4.16
3739 4183 1.134280 AGTTCAGATTCCAGATGGCGG 60.134 52.381 0.00 0.00 34.44 6.13
3892 4336 4.201910 CGACCATAACAAACATTAGCTGGG 60.202 45.833 0.00 0.00 0.00 4.45
3951 4396 7.175990 GGATTGTGGTTAACCTTATCAGACAAA 59.824 37.037 24.78 10.11 36.82 2.83
3956 4401 7.703058 AAAGGATTGTGGTTAACCTTATCAG 57.297 36.000 24.78 0.00 39.59 2.90
3963 4408 4.157840 CAGCCTAAAGGATTGTGGTTAACC 59.842 45.833 18.27 18.27 37.39 2.85
3970 4415 5.674525 TCAGTATCAGCCTAAAGGATTGTG 58.325 41.667 0.00 0.00 37.39 3.33
3977 4422 7.278875 AGGAATTTCTCAGTATCAGCCTAAAG 58.721 38.462 0.00 0.00 0.00 1.85
4337 4783 5.988561 ACTAATGGATTCTCGAAGCAATCTC 59.011 40.000 9.91 3.70 30.85 2.75
4366 4812 7.598869 TGTTAAGACACACATCTGAGTAATCAC 59.401 37.037 0.00 0.00 0.00 3.06
4388 4834 5.477984 AGGCATCAGAAAGCAGAATTTGTTA 59.522 36.000 1.16 0.00 0.00 2.41
4390 4836 3.830755 AGGCATCAGAAAGCAGAATTTGT 59.169 39.130 1.16 0.00 0.00 2.83
4391 4837 4.451629 AGGCATCAGAAAGCAGAATTTG 57.548 40.909 1.16 0.00 0.00 2.32
4432 4878 1.473965 CCCTGCACGCATAGAAGTCAT 60.474 52.381 0.00 0.00 0.00 3.06
4433 4879 0.108186 CCCTGCACGCATAGAAGTCA 60.108 55.000 0.00 0.00 0.00 3.41
4434 4880 0.811616 CCCCTGCACGCATAGAAGTC 60.812 60.000 0.00 0.00 0.00 3.01
4435 4881 1.221840 CCCCTGCACGCATAGAAGT 59.778 57.895 0.00 0.00 0.00 3.01
4436 4882 0.392998 AACCCCTGCACGCATAGAAG 60.393 55.000 0.00 0.00 0.00 2.85
4530 4976 9.520204 TGTACACACTACTGAACTTAAAGTAAC 57.480 33.333 0.00 0.00 0.00 2.50
4605 5051 7.606892 ACATAGACCCTATAGATCCTTACCT 57.393 40.000 0.00 0.00 0.00 3.08
4749 5196 2.714250 ACCACAACCTGAAATGTAGGGA 59.286 45.455 0.00 0.00 39.71 4.20
4920 5368 5.255710 TCGAAAGGATAAAGCTGAGAGAG 57.744 43.478 0.00 0.00 0.00 3.20
4930 5378 6.931838 TGAACTAGAGCTTCGAAAGGATAAA 58.068 36.000 0.00 0.00 0.00 1.40
5009 5466 8.466086 CTTGATTGCCAAGGAAAGTTTTATAC 57.534 34.615 0.00 0.00 46.54 1.47
5076 5535 1.279840 GTCAGAGTTGCGTGTTGGC 59.720 57.895 0.00 0.00 0.00 4.52
5151 5610 8.856103 CCTATATTGTTTTTGGGAATCGGTATT 58.144 33.333 0.00 0.00 0.00 1.89
5573 6034 4.038522 TCTCCTCAATAGATTCAGGAAGCG 59.961 45.833 0.00 0.00 34.53 4.68
5655 6116 8.624776 CCATAAACTCACAGGAAATTAGAATCC 58.375 37.037 0.00 0.00 35.88 3.01
5668 6129 5.875359 GGAACTTAGGACCATAAACTCACAG 59.125 44.000 0.00 0.00 0.00 3.66
5669 6130 5.546499 AGGAACTTAGGACCATAAACTCACA 59.454 40.000 0.00 0.00 27.25 3.58
5699 6160 6.262049 CGTTGGTGGGTGATCATATTCATAAA 59.738 38.462 0.00 0.00 0.00 1.40
5752 6213 1.601759 GAGCCCAGCTGCTTCAACA 60.602 57.895 8.66 0.00 42.95 3.33
6009 6471 9.520515 TTCCCCTTAAATATGCAAGAGATAATC 57.479 33.333 0.00 0.00 0.00 1.75
6046 6508 5.335426 CCAACTCAGAATGGTGTTCAGATTG 60.335 44.000 0.00 0.00 36.16 2.67
6049 6511 3.390967 TCCAACTCAGAATGGTGTTCAGA 59.609 43.478 1.90 0.00 37.94 3.27
6225 6687 3.673902 TCCTTTCAGCATCGATTGAACA 58.326 40.909 11.21 4.19 33.36 3.18
6228 6690 4.141233 TGATCCTTTCAGCATCGATTGA 57.859 40.909 0.00 0.00 0.00 2.57
6238 6700 4.276678 TGCAGTTGAGTTTGATCCTTTCAG 59.723 41.667 0.00 0.00 35.27 3.02
6245 6707 3.141398 TGGACTGCAGTTGAGTTTGATC 58.859 45.455 22.65 3.41 0.00 2.92
6258 6720 2.499693 TGTTTCCGATCTATGGACTGCA 59.500 45.455 0.00 0.00 34.56 4.41
6260 6722 5.292101 GTCTTTGTTTCCGATCTATGGACTG 59.708 44.000 0.00 0.00 34.56 3.51
6414 6876 4.508584 GGAAAGTGAACCCAGTTAATCCCT 60.509 45.833 0.00 0.00 35.01 4.20
6459 6921 4.332828 TCACAATAGAAGAGTCCGACTGA 58.667 43.478 5.57 0.00 0.00 3.41
6492 6954 4.202050 ACAACCACAAAAACTGAGATGCTC 60.202 41.667 0.00 0.00 0.00 4.26
6495 6957 4.142182 ACCACAACCACAAAAACTGAGATG 60.142 41.667 0.00 0.00 0.00 2.90
6505 6967 6.547880 ACTGAATACAATACCACAACCACAAA 59.452 34.615 0.00 0.00 0.00 2.83
6509 6971 6.121776 AGACTGAATACAATACCACAACCA 57.878 37.500 0.00 0.00 0.00 3.67
6510 6972 6.092259 GTGAGACTGAATACAATACCACAACC 59.908 42.308 0.00 0.00 0.00 3.77
6522 6984 7.539436 TCAGTAACATGAGTGAGACTGAATAC 58.461 38.462 0.00 0.00 42.25 1.89
6531 6993 6.450545 TCTTGTTCTCAGTAACATGAGTGAG 58.549 40.000 11.36 11.36 45.70 3.51
6555 7017 6.006449 CCATAGCCCTATAACAAGCATTCTT 58.994 40.000 0.00 0.00 0.00 2.52
6561 7023 3.077359 CAGCCATAGCCCTATAACAAGC 58.923 50.000 0.00 0.00 41.25 4.01
6565 7027 2.979240 GCTCAGCCATAGCCCTATAAC 58.021 52.381 0.00 0.00 41.25 1.89
6615 7077 4.517285 TGACCTGACTTTTCCAGATATGC 58.483 43.478 0.00 0.00 33.65 3.14
6651 7113 3.457234 TGATGTCGTGCTATGGTTGATC 58.543 45.455 0.00 0.00 0.00 2.92
6717 7182 9.425248 AATATCCATGGAGATAAAAGAAAAGCA 57.575 29.630 21.91 0.00 32.61 3.91
7000 7465 9.745880 GTGGTCGAACAGAGATTATAAAGAATA 57.254 33.333 1.63 0.00 0.00 1.75
7001 7466 7.711339 GGTGGTCGAACAGAGATTATAAAGAAT 59.289 37.037 1.63 0.00 0.00 2.40
7010 7475 2.355108 CCATGGTGGTCGAACAGAGATT 60.355 50.000 1.63 0.00 31.35 2.40
7031 7496 8.688747 ATTCCATGAATCTGGAGAAAAGATAC 57.311 34.615 0.00 0.00 45.80 2.24
7032 7497 8.496916 TGATTCCATGAATCTGGAGAAAAGATA 58.503 33.333 15.58 0.00 45.92 1.98
7033 7498 7.351952 TGATTCCATGAATCTGGAGAAAAGAT 58.648 34.615 15.58 0.00 45.92 2.40
7068 7533 6.813152 CCCAATTGTTAGCCAGTGAAAATAAG 59.187 38.462 4.43 0.00 0.00 1.73
7078 7543 2.896168 CATTGCCCAATTGTTAGCCAG 58.104 47.619 4.43 0.00 0.00 4.85
7098 7563 0.109781 CGCAACAACCTACACCATGC 60.110 55.000 0.00 0.00 0.00 4.06
7099 7564 1.518325 TCGCAACAACCTACACCATG 58.482 50.000 0.00 0.00 0.00 3.66
7101 7566 1.518325 CATCGCAACAACCTACACCA 58.482 50.000 0.00 0.00 0.00 4.17
7265 7730 7.276438 GCTTGAAATGCCCTGTTAAAATTAGAG 59.724 37.037 0.00 0.00 0.00 2.43
7285 7750 0.606604 GGACCGTGGAGTAGCTTGAA 59.393 55.000 0.00 0.00 0.00 2.69
7352 7817 2.011122 ACCACCATCCCGAGGTATAG 57.989 55.000 0.00 0.00 37.23 1.31
7430 7895 3.436704 GGAAGTGCGATCATTCTGTTCAA 59.563 43.478 0.00 0.00 0.00 2.69
7450 7915 2.123632 AGAGGGAGCAAGCAGGGA 59.876 61.111 0.00 0.00 0.00 4.20
7456 7921 0.540454 TGATGAGCAGAGGGAGCAAG 59.460 55.000 0.00 0.00 0.00 4.01
7466 7931 4.023107 CAGGGCAATAGAATTGATGAGCAG 60.023 45.833 3.86 0.00 0.00 4.24
7546 8011 3.003480 GAGCACTTACTTTGGCGAGAAT 58.997 45.455 0.00 0.00 0.00 2.40
7605 8070 4.423732 CCTTCCATTGAGCGGTTAAATTG 58.576 43.478 0.00 0.00 0.00 2.32
7613 8078 2.830370 GGCCCTTCCATTGAGCGG 60.830 66.667 0.00 0.00 34.01 5.52
7652 8117 6.927936 CCACAATAACCATCACAATTCACAAA 59.072 34.615 0.00 0.00 0.00 2.83
7653 8118 6.266330 TCCACAATAACCATCACAATTCACAA 59.734 34.615 0.00 0.00 0.00 3.33
7654 8119 5.772169 TCCACAATAACCATCACAATTCACA 59.228 36.000 0.00 0.00 0.00 3.58
7655 8120 6.266168 TCCACAATAACCATCACAATTCAC 57.734 37.500 0.00 0.00 0.00 3.18
7656 8121 7.613411 TGTATCCACAATAACCATCACAATTCA 59.387 33.333 0.00 0.00 0.00 2.57
7657 8122 7.995289 TGTATCCACAATAACCATCACAATTC 58.005 34.615 0.00 0.00 0.00 2.17
7658 8123 7.953005 TGTATCCACAATAACCATCACAATT 57.047 32.000 0.00 0.00 0.00 2.32
7659 8124 7.560991 ACATGTATCCACAATAACCATCACAAT 59.439 33.333 0.00 0.00 38.42 2.71
7706 8171 5.760253 CAGATGTAAGCATAGGGAAACGATT 59.240 40.000 0.00 0.00 35.07 3.34
7714 8179 4.526970 ACAAACCAGATGTAAGCATAGGG 58.473 43.478 0.00 0.00 35.73 3.53
7732 8197 7.707464 TGAAGTTCGTCAGATAACAGTAACAAA 59.293 33.333 0.00 0.00 0.00 2.83
7735 8200 7.009357 GGATGAAGTTCGTCAGATAACAGTAAC 59.991 40.741 23.27 1.42 34.15 2.50
7742 8207 3.134081 GGGGGATGAAGTTCGTCAGATAA 59.866 47.826 23.27 0.00 34.15 1.75
7770 8235 3.546417 CGCAGACGTAGAGGTATCTGTTC 60.546 52.174 0.00 0.00 40.61 3.18
7776 8241 1.647629 CGCGCAGACGTAGAGGTAT 59.352 57.895 8.75 0.00 42.83 2.73
7827 8292 0.107456 AAGCTCCGGTCATGGCTATG 59.893 55.000 3.17 3.17 34.40 2.23
7882 8347 5.299531 TCTGACCTACGGATTTGTCTCTATG 59.700 44.000 0.00 0.00 0.00 2.23
7884 8349 4.851843 TCTGACCTACGGATTTGTCTCTA 58.148 43.478 0.00 0.00 0.00 2.43
7901 8366 0.824759 ACCCTAGCCGTCAATCTGAC 59.175 55.000 0.00 0.00 43.65 3.51
7919 8384 5.965922 ACAATGCCTGCTAATTAAGGAAAC 58.034 37.500 7.30 0.00 35.40 2.78
7926 8391 6.767902 CCTTCTCTAACAATGCCTGCTAATTA 59.232 38.462 0.00 0.00 0.00 1.40
8005 8475 5.749109 CGTTTACACTCTTCAGAGACAAAGT 59.251 40.000 10.93 4.03 44.74 2.66
8129 8623 2.168936 TGTGGGTGCCTAAATACGGTAG 59.831 50.000 0.00 0.00 0.00 3.18
8205 8702 7.338710 AGTGTACATTGGCTCTTTGTATGTAT 58.661 34.615 0.00 0.00 35.07 2.29
8206 8703 6.707290 AGTGTACATTGGCTCTTTGTATGTA 58.293 36.000 0.00 0.00 32.23 2.29
8207 8704 5.560724 AGTGTACATTGGCTCTTTGTATGT 58.439 37.500 0.00 0.00 34.18 2.29
8208 8705 5.877012 AGAGTGTACATTGGCTCTTTGTATG 59.123 40.000 7.69 0.00 35.02 2.39
8264 8764 5.510671 GCTGCTGCAATACGTGTTTATTAT 58.489 37.500 11.11 0.00 39.41 1.28
8357 8857 2.046988 CGGTGCTCATGTGCCTGA 60.047 61.111 16.62 0.00 0.00 3.86
8496 9005 3.421919 TTGCCACTGATGATTCTGTCA 57.578 42.857 0.00 0.00 42.06 3.58
8511 9020 2.106477 TATGTCGCTGTTGATTGCCA 57.894 45.000 0.00 0.00 0.00 4.92
8513 9022 4.093408 TCTTCTTATGTCGCTGTTGATTGC 59.907 41.667 0.00 0.00 0.00 3.56
8514 9023 5.578336 TCTCTTCTTATGTCGCTGTTGATTG 59.422 40.000 0.00 0.00 0.00 2.67
8548 9071 1.725164 CGTAAGAAACTCAACTCGCCC 59.275 52.381 0.00 0.00 43.02 6.13
8672 9210 2.069273 CGTGTGAGATGAGGTTTCCAC 58.931 52.381 0.00 0.00 0.00 4.02
8684 9222 4.142447 GGACTGCTATAGTTTCGTGTGAGA 60.142 45.833 0.84 0.00 40.53 3.27
8707 9245 1.825191 CGTTCATCCTGCCCCATGG 60.825 63.158 4.14 4.14 0.00 3.66
8708 9246 0.180171 TACGTTCATCCTGCCCCATG 59.820 55.000 0.00 0.00 0.00 3.66
8722 9272 2.350388 CGCTTCAATGCAAAGGTACGTT 60.350 45.455 0.00 0.00 0.00 3.99
8736 9286 4.028490 ATGGCCGTCCCGCTTCAA 62.028 61.111 0.00 0.00 35.87 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.