Multiple sequence alignment - TraesCS6B01G371300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G371300 chr6B 100.000 3670 0 0 1 3670 645361039 645357370 0.000000e+00 6778.0
1 TraesCS6B01G371300 chr6B 96.825 252 6 2 1 250 116275178 116275429 1.580000e-113 420.0
2 TraesCS6B01G371300 chr6D 91.199 3511 171 64 238 3670 428651017 428647567 0.000000e+00 4645.0
3 TraesCS6B01G371300 chr6A 90.270 1665 97 38 474 2124 573414954 573413341 0.000000e+00 2117.0
4 TraesCS6B01G371300 chr6A 87.480 615 46 15 2597 3198 573413034 573412438 0.000000e+00 680.0
5 TraesCS6B01G371300 chr6A 96.800 250 8 0 1 250 470072996 470072747 5.670000e-113 418.0
6 TraesCS6B01G371300 chr6A 81.687 415 39 14 3271 3669 573412435 573412042 9.900000e-81 311.0
7 TraesCS6B01G371300 chr6A 86.188 181 10 7 2354 2533 573413343 573413177 8.100000e-42 182.0
8 TraesCS6B01G371300 chr6A 100.000 28 0 0 3231 3258 145186045 145186018 7.000000e-03 52.8
9 TraesCS6B01G371300 chr2B 97.590 249 6 0 1 249 25869573 25869821 9.420000e-116 427.0
10 TraesCS6B01G371300 chr2B 97.917 240 5 0 1 240 781101880 781102119 2.040000e-112 416.0
11 TraesCS6B01G371300 chr2B 79.825 114 21 2 1211 1323 469613831 469613719 8.450000e-12 82.4
12 TraesCS6B01G371300 chr7B 98.745 239 3 0 1 239 1768591 1768353 3.390000e-115 425.0
13 TraesCS6B01G371300 chr7B 97.166 247 6 1 1 246 552924367 552924121 2.040000e-112 416.0
14 TraesCS6B01G371300 chr4A 97.211 251 5 2 1 249 726673922 726673672 1.220000e-114 424.0
15 TraesCS6B01G371300 chr4B 98.333 240 4 0 1 240 578522296 578522057 4.380000e-114 422.0
16 TraesCS6B01G371300 chr1B 97.551 245 4 1 1 245 554728350 554728108 5.670000e-113 418.0
17 TraesCS6B01G371300 chr1B 80.882 136 16 5 2136 2263 30850978 30851111 8.390000e-17 99.0
18 TraesCS6B01G371300 chr1B 82.051 78 14 0 3199 3276 520977343 520977420 2.370000e-07 67.6
19 TraesCS6B01G371300 chr1D 84.817 191 21 5 2135 2322 252487332 252487517 6.260000e-43 185.0
20 TraesCS6B01G371300 chr1D 83.648 159 11 9 2138 2293 6176919 6176773 6.390000e-28 135.0
21 TraesCS6B01G371300 chr1D 90.000 60 6 0 3199 3258 61934671 61934730 1.090000e-10 78.7
22 TraesCS6B01G371300 chr5D 85.000 180 18 6 2136 2312 386689094 386689267 1.350000e-39 174.0
23 TraesCS6B01G371300 chr2A 85.185 162 15 5 2135 2293 701862914 701863069 1.360000e-34 158.0
24 TraesCS6B01G371300 chr2A 79.459 185 26 9 2137 2318 46312750 46312575 1.790000e-23 121.0
25 TraesCS6B01G371300 chr2A 78.947 114 22 2 1211 1323 534318608 534318496 3.930000e-10 76.8
26 TraesCS6B01G371300 chr4D 85.065 154 14 6 2136 2286 19772631 19772484 8.210000e-32 148.0
27 TraesCS6B01G371300 chr2D 81.250 192 23 11 2135 2322 561902657 561902839 3.820000e-30 143.0
28 TraesCS6B01G371300 chr2D 77.679 112 23 2 1213 1323 396425467 396425357 2.370000e-07 67.6
29 TraesCS6B01G371300 chr1A 88.333 60 7 0 3199 3258 59778758 59778817 5.080000e-09 73.1
30 TraesCS6B01G371300 chr1A 85.714 56 8 0 2270 2325 474422235 474422290 3.960000e-05 60.2
31 TraesCS6B01G371300 chr3D 85.714 56 7 1 3231 3286 609983863 609983917 1.420000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G371300 chr6B 645357370 645361039 3669 True 6778.0 6778 100.00000 1 3670 1 chr6B.!!$R1 3669
1 TraesCS6B01G371300 chr6D 428647567 428651017 3450 True 4645.0 4645 91.19900 238 3670 1 chr6D.!!$R1 3432
2 TraesCS6B01G371300 chr6A 573412042 573414954 2912 True 822.5 2117 86.40625 474 3669 4 chr6A.!!$R3 3195

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
24 25 0.033109 GGATTTAGTTGCAGGGGCCT 60.033 55.0 0.84 0.00 40.13 5.19 F
190 191 0.035152 ACAATTCGCATCTGAGGGCA 60.035 50.0 5.18 0.00 0.00 5.36 F
215 216 0.035317 GAGCACATGGACACCACTGA 59.965 55.0 0.00 0.00 35.80 3.41 F
216 217 0.035881 AGCACATGGACACCACTGAG 59.964 55.0 0.00 0.00 35.80 3.35 F
226 227 0.178992 CACCACTGAGGGCAAAAGGA 60.179 55.0 0.00 0.00 43.89 3.36 F
518 521 0.318762 GTCCTGCTATCGATGGGACC 59.681 60.0 20.78 4.76 40.14 4.46 F
1042 1074 0.458025 CCAGCGTCTAACCCTTCGAC 60.458 60.0 0.00 0.00 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1113 0.044330 CTAGTAGTCGTCGTCGTCGC 60.044 60.000 7.01 3.07 38.33 5.19 R
1945 1981 1.696063 ACTCTTTGCAATGCACCTGT 58.304 45.000 7.72 1.82 38.71 4.00 R
2195 2236 3.837213 ACGAACCATGCAAGATCAAAG 57.163 42.857 0.00 0.00 0.00 2.77 R
2201 2242 6.811253 AATTTTAGTACGAACCATGCAAGA 57.189 33.333 0.00 0.00 0.00 3.02 R
2205 2246 7.631915 ACAAAAATTTTAGTACGAACCATGC 57.368 32.000 3.34 0.00 0.00 4.06 R
2339 2384 0.824759 GGGACTTGGATGTAGCGAGT 59.175 55.000 0.00 0.00 0.00 4.18 R
2683 2841 1.008538 GTTGTTTCACCTGGCTGCG 60.009 57.895 0.00 0.00 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.230130 TTGGGGATTTAGTTGCAGGG 57.770 50.000 0.00 0.00 0.00 4.45
21 22 0.334676 TGGGGATTTAGTTGCAGGGG 59.665 55.000 0.00 0.00 0.00 4.79
22 23 1.043116 GGGGATTTAGTTGCAGGGGC 61.043 60.000 0.00 0.00 41.68 5.80
23 24 1.043116 GGGATTTAGTTGCAGGGGCC 61.043 60.000 0.00 0.00 40.13 5.80
24 25 0.033109 GGATTTAGTTGCAGGGGCCT 60.033 55.000 0.84 0.00 40.13 5.19
25 26 1.214424 GGATTTAGTTGCAGGGGCCTA 59.786 52.381 0.84 0.00 40.13 3.93
26 27 2.298610 GATTTAGTTGCAGGGGCCTAC 58.701 52.381 0.84 0.00 40.13 3.18
27 28 1.068948 TTTAGTTGCAGGGGCCTACA 58.931 50.000 0.84 0.00 40.13 2.74
28 29 1.295020 TTAGTTGCAGGGGCCTACAT 58.705 50.000 0.84 0.00 40.13 2.29
29 30 0.546122 TAGTTGCAGGGGCCTACATG 59.454 55.000 0.84 0.00 40.13 3.21
30 31 1.000896 GTTGCAGGGGCCTACATGT 60.001 57.895 0.84 2.69 40.13 3.21
31 32 1.032114 GTTGCAGGGGCCTACATGTC 61.032 60.000 0.00 0.00 40.13 3.06
32 33 1.496444 TTGCAGGGGCCTACATGTCA 61.496 55.000 0.00 0.00 40.13 3.58
33 34 1.153086 GCAGGGGCCTACATGTCAG 60.153 63.158 0.00 0.00 0.00 3.51
34 35 1.153086 CAGGGGCCTACATGTCAGC 60.153 63.158 0.00 6.54 0.00 4.26
35 36 1.307343 AGGGGCCTACATGTCAGCT 60.307 57.895 16.89 0.00 0.00 4.24
36 37 1.147153 GGGGCCTACATGTCAGCTC 59.853 63.158 16.89 13.97 0.00 4.09
37 38 1.147153 GGGCCTACATGTCAGCTCC 59.853 63.158 16.89 13.14 0.00 4.70
38 39 1.227380 GGCCTACATGTCAGCTCCG 60.227 63.158 16.89 0.00 0.00 4.63
39 40 1.227380 GCCTACATGTCAGCTCCGG 60.227 63.158 0.00 0.00 0.00 5.14
40 41 1.676678 GCCTACATGTCAGCTCCGGA 61.677 60.000 2.93 2.93 0.00 5.14
41 42 0.103208 CCTACATGTCAGCTCCGGAC 59.897 60.000 0.00 0.00 35.83 4.79
42 43 0.103208 CTACATGTCAGCTCCGGACC 59.897 60.000 0.00 0.00 34.36 4.46
43 44 1.327690 TACATGTCAGCTCCGGACCC 61.328 60.000 0.00 0.00 34.36 4.46
44 45 2.284625 ATGTCAGCTCCGGACCCA 60.285 61.111 0.00 0.00 34.36 4.51
45 46 2.660064 ATGTCAGCTCCGGACCCAC 61.660 63.158 0.00 0.00 34.36 4.61
46 47 4.436998 GTCAGCTCCGGACCCACG 62.437 72.222 0.00 0.00 0.00 4.94
47 48 4.988716 TCAGCTCCGGACCCACGT 62.989 66.667 0.00 0.00 0.00 4.49
48 49 4.436998 CAGCTCCGGACCCACGTC 62.437 72.222 0.00 0.00 38.38 4.34
63 64 4.388499 GTCCACGCGGTCCCACAT 62.388 66.667 12.47 0.00 0.00 3.21
64 65 4.386951 TCCACGCGGTCCCACATG 62.387 66.667 12.47 0.00 0.00 3.21
65 66 4.697756 CCACGCGGTCCCACATGT 62.698 66.667 12.47 0.00 0.00 3.21
66 67 2.263227 CACGCGGTCCCACATGTA 59.737 61.111 12.47 0.00 0.00 2.29
67 68 1.374885 CACGCGGTCCCACATGTAA 60.375 57.895 12.47 0.00 0.00 2.41
68 69 1.079405 ACGCGGTCCCACATGTAAG 60.079 57.895 12.47 0.00 0.00 2.34
69 70 2.461110 CGCGGTCCCACATGTAAGC 61.461 63.158 0.00 0.00 0.00 3.09
70 71 1.078426 GCGGTCCCACATGTAAGCT 60.078 57.895 0.00 0.00 0.00 3.74
71 72 1.090052 GCGGTCCCACATGTAAGCTC 61.090 60.000 0.00 0.00 0.00 4.09
72 73 0.537188 CGGTCCCACATGTAAGCTCT 59.463 55.000 0.00 0.00 0.00 4.09
73 74 1.740380 CGGTCCCACATGTAAGCTCTG 60.740 57.143 0.00 0.00 0.00 3.35
74 75 1.407437 GGTCCCACATGTAAGCTCTGG 60.407 57.143 0.00 0.00 0.00 3.86
75 76 1.555075 GTCCCACATGTAAGCTCTGGA 59.445 52.381 0.00 0.00 0.00 3.86
76 77 1.555075 TCCCACATGTAAGCTCTGGAC 59.445 52.381 0.00 0.00 0.00 4.02
77 78 1.407437 CCCACATGTAAGCTCTGGACC 60.407 57.143 0.00 0.00 0.00 4.46
78 79 1.407437 CCACATGTAAGCTCTGGACCC 60.407 57.143 0.00 0.00 0.00 4.46
79 80 1.278985 CACATGTAAGCTCTGGACCCA 59.721 52.381 0.00 0.00 0.00 4.51
80 81 1.279271 ACATGTAAGCTCTGGACCCAC 59.721 52.381 0.00 0.00 0.00 4.61
81 82 1.278985 CATGTAAGCTCTGGACCCACA 59.721 52.381 0.00 0.00 0.00 4.17
82 83 1.429930 TGTAAGCTCTGGACCCACAA 58.570 50.000 0.00 0.00 0.00 3.33
83 84 1.071699 TGTAAGCTCTGGACCCACAAC 59.928 52.381 0.00 0.00 0.00 3.32
84 85 1.348036 GTAAGCTCTGGACCCACAACT 59.652 52.381 0.00 0.00 0.00 3.16
85 86 1.729586 AAGCTCTGGACCCACAACTA 58.270 50.000 0.00 0.00 0.00 2.24
86 87 0.977395 AGCTCTGGACCCACAACTAC 59.023 55.000 0.00 0.00 0.00 2.73
87 88 0.977395 GCTCTGGACCCACAACTACT 59.023 55.000 0.00 0.00 0.00 2.57
88 89 2.176889 GCTCTGGACCCACAACTACTA 58.823 52.381 0.00 0.00 0.00 1.82
89 90 2.565834 GCTCTGGACCCACAACTACTAA 59.434 50.000 0.00 0.00 0.00 2.24
90 91 3.616802 GCTCTGGACCCACAACTACTAAC 60.617 52.174 0.00 0.00 0.00 2.34
91 92 2.559668 TCTGGACCCACAACTACTAACG 59.440 50.000 0.00 0.00 0.00 3.18
92 93 1.001181 TGGACCCACAACTACTAACGC 59.999 52.381 0.00 0.00 0.00 4.84
93 94 1.673923 GGACCCACAACTACTAACGCC 60.674 57.143 0.00 0.00 0.00 5.68
94 95 0.037975 ACCCACAACTACTAACGCCG 60.038 55.000 0.00 0.00 0.00 6.46
95 96 0.738412 CCCACAACTACTAACGCCGG 60.738 60.000 0.00 0.00 0.00 6.13
96 97 1.356527 CCACAACTACTAACGCCGGC 61.357 60.000 19.07 19.07 0.00 6.13
97 98 1.444895 ACAACTACTAACGCCGGCG 60.445 57.895 44.88 44.88 46.03 6.46
110 111 4.143333 CGGCGGACGGAATGGACT 62.143 66.667 0.00 0.00 39.42 3.85
111 112 2.202892 GGCGGACGGAATGGACTC 60.203 66.667 0.00 0.00 0.00 3.36
112 113 2.577059 GCGGACGGAATGGACTCA 59.423 61.111 0.00 0.00 0.00 3.41
113 114 1.079405 GCGGACGGAATGGACTCAA 60.079 57.895 0.00 0.00 0.00 3.02
114 115 0.672401 GCGGACGGAATGGACTCAAA 60.672 55.000 0.00 0.00 0.00 2.69
115 116 2.012051 GCGGACGGAATGGACTCAAAT 61.012 52.381 0.00 0.00 0.00 2.32
116 117 2.740580 GCGGACGGAATGGACTCAAATA 60.741 50.000 0.00 0.00 0.00 1.40
117 118 3.728845 CGGACGGAATGGACTCAAATAT 58.271 45.455 0.00 0.00 0.00 1.28
118 119 3.494626 CGGACGGAATGGACTCAAATATG 59.505 47.826 0.00 0.00 0.00 1.78
119 120 3.815401 GGACGGAATGGACTCAAATATGG 59.185 47.826 0.00 0.00 0.00 2.74
120 121 3.214328 ACGGAATGGACTCAAATATGGC 58.786 45.455 0.00 0.00 0.00 4.40
121 122 2.554032 CGGAATGGACTCAAATATGGCC 59.446 50.000 0.00 0.00 0.00 5.36
122 123 2.554032 GGAATGGACTCAAATATGGCCG 59.446 50.000 0.00 0.00 0.00 6.13
123 124 3.214328 GAATGGACTCAAATATGGCCGT 58.786 45.455 1.35 1.35 0.00 5.68
124 125 2.799126 TGGACTCAAATATGGCCGTT 57.201 45.000 0.77 0.00 0.00 4.44
125 126 3.080300 TGGACTCAAATATGGCCGTTT 57.920 42.857 0.77 0.00 0.00 3.60
126 127 2.752354 TGGACTCAAATATGGCCGTTTG 59.248 45.455 17.32 17.32 36.82 2.93
127 128 2.099098 GGACTCAAATATGGCCGTTTGG 59.901 50.000 20.96 15.83 36.30 3.28
137 138 2.259204 CCGTTTGGCCTCGTCGTA 59.741 61.111 3.32 0.00 0.00 3.43
138 139 1.804326 CCGTTTGGCCTCGTCGTAG 60.804 63.158 3.32 0.00 0.00 3.51
139 140 1.080974 CGTTTGGCCTCGTCGTAGT 60.081 57.895 3.32 0.00 0.00 2.73
140 141 0.665369 CGTTTGGCCTCGTCGTAGTT 60.665 55.000 3.32 0.00 0.00 2.24
141 142 0.788391 GTTTGGCCTCGTCGTAGTTG 59.212 55.000 3.32 0.00 0.00 3.16
142 143 0.947180 TTTGGCCTCGTCGTAGTTGC 60.947 55.000 3.32 0.00 0.00 4.17
143 144 1.812686 TTGGCCTCGTCGTAGTTGCT 61.813 55.000 3.32 0.00 0.00 3.91
144 145 1.805945 GGCCTCGTCGTAGTTGCTG 60.806 63.158 0.00 0.00 0.00 4.41
145 146 1.080705 GCCTCGTCGTAGTTGCTGT 60.081 57.895 0.00 0.00 0.00 4.40
146 147 1.344942 GCCTCGTCGTAGTTGCTGTG 61.345 60.000 0.00 0.00 0.00 3.66
147 148 1.344942 CCTCGTCGTAGTTGCTGTGC 61.345 60.000 0.00 0.00 0.00 4.57
148 149 0.387367 CTCGTCGTAGTTGCTGTGCT 60.387 55.000 0.00 0.00 0.00 4.40
149 150 0.386858 TCGTCGTAGTTGCTGTGCTC 60.387 55.000 0.00 0.00 0.00 4.26
150 151 1.665544 CGTCGTAGTTGCTGTGCTCG 61.666 60.000 0.00 0.00 0.00 5.03
151 152 1.080772 TCGTAGTTGCTGTGCTCGG 60.081 57.895 0.00 0.00 0.00 4.63
152 153 1.080772 CGTAGTTGCTGTGCTCGGA 60.081 57.895 0.00 0.00 0.00 4.55
153 154 0.458543 CGTAGTTGCTGTGCTCGGAT 60.459 55.000 0.00 0.00 0.00 4.18
154 155 1.726853 GTAGTTGCTGTGCTCGGATT 58.273 50.000 0.00 0.00 0.00 3.01
155 156 2.734175 CGTAGTTGCTGTGCTCGGATTA 60.734 50.000 0.00 0.00 0.00 1.75
156 157 2.015736 AGTTGCTGTGCTCGGATTAG 57.984 50.000 0.00 0.00 0.00 1.73
157 158 1.009829 GTTGCTGTGCTCGGATTAGG 58.990 55.000 0.00 0.00 0.00 2.69
158 159 0.107703 TTGCTGTGCTCGGATTAGGG 60.108 55.000 0.00 0.00 0.00 3.53
159 160 1.227674 GCTGTGCTCGGATTAGGGG 60.228 63.158 0.00 0.00 0.00 4.79
160 161 1.227674 CTGTGCTCGGATTAGGGGC 60.228 63.158 0.00 0.00 0.00 5.80
161 162 1.971505 CTGTGCTCGGATTAGGGGCA 61.972 60.000 0.00 0.00 0.00 5.36
162 163 1.223487 GTGCTCGGATTAGGGGCAA 59.777 57.895 0.00 0.00 34.65 4.52
163 164 0.393808 GTGCTCGGATTAGGGGCAAA 60.394 55.000 0.00 0.00 34.65 3.68
164 165 0.329931 TGCTCGGATTAGGGGCAAAA 59.670 50.000 0.00 0.00 0.00 2.44
165 166 0.738975 GCTCGGATTAGGGGCAAAAC 59.261 55.000 0.00 0.00 0.00 2.43
166 167 1.682087 GCTCGGATTAGGGGCAAAACT 60.682 52.381 0.00 0.00 0.00 2.66
167 168 2.017049 CTCGGATTAGGGGCAAAACTG 58.983 52.381 0.00 0.00 0.00 3.16
168 169 1.631388 TCGGATTAGGGGCAAAACTGA 59.369 47.619 0.00 0.00 0.00 3.41
169 170 2.017049 CGGATTAGGGGCAAAACTGAG 58.983 52.381 0.00 0.00 0.00 3.35
170 171 2.379005 GGATTAGGGGCAAAACTGAGG 58.621 52.381 0.00 0.00 0.00 3.86
171 172 2.025321 GGATTAGGGGCAAAACTGAGGA 60.025 50.000 0.00 0.00 0.00 3.71
172 173 2.579410 TTAGGGGCAAAACTGAGGAC 57.421 50.000 0.00 0.00 0.00 3.85
173 174 1.440618 TAGGGGCAAAACTGAGGACA 58.559 50.000 0.00 0.00 0.00 4.02
174 175 0.555769 AGGGGCAAAACTGAGGACAA 59.444 50.000 0.00 0.00 0.00 3.18
175 176 1.147817 AGGGGCAAAACTGAGGACAAT 59.852 47.619 0.00 0.00 0.00 2.71
176 177 1.970640 GGGGCAAAACTGAGGACAATT 59.029 47.619 0.00 0.00 0.00 2.32
177 178 2.029020 GGGGCAAAACTGAGGACAATTC 60.029 50.000 0.00 0.00 0.00 2.17
178 179 2.351738 GGGCAAAACTGAGGACAATTCG 60.352 50.000 0.00 0.00 0.00 3.34
179 180 2.319472 GCAAAACTGAGGACAATTCGC 58.681 47.619 0.00 0.00 0.00 4.70
180 181 2.287547 GCAAAACTGAGGACAATTCGCA 60.288 45.455 0.00 0.00 0.00 5.10
181 182 3.612479 GCAAAACTGAGGACAATTCGCAT 60.612 43.478 0.00 0.00 0.00 4.73
182 183 4.161333 CAAAACTGAGGACAATTCGCATC 58.839 43.478 0.00 0.00 0.00 3.91
183 184 3.340814 AACTGAGGACAATTCGCATCT 57.659 42.857 0.00 0.00 0.00 2.90
184 185 2.625737 ACTGAGGACAATTCGCATCTG 58.374 47.619 0.00 0.00 0.00 2.90
185 186 2.234661 ACTGAGGACAATTCGCATCTGA 59.765 45.455 0.00 0.00 0.00 3.27
186 187 2.864946 CTGAGGACAATTCGCATCTGAG 59.135 50.000 0.00 0.00 0.00 3.35
187 188 2.208431 GAGGACAATTCGCATCTGAGG 58.792 52.381 0.00 0.00 0.00 3.86
188 189 1.134280 AGGACAATTCGCATCTGAGGG 60.134 52.381 0.00 0.00 0.00 4.30
189 190 0.659957 GACAATTCGCATCTGAGGGC 59.340 55.000 0.00 0.00 0.00 5.19
190 191 0.035152 ACAATTCGCATCTGAGGGCA 60.035 50.000 5.18 0.00 0.00 5.36
191 192 1.097232 CAATTCGCATCTGAGGGCAA 58.903 50.000 5.18 0.25 0.00 4.52
192 193 1.473677 CAATTCGCATCTGAGGGCAAA 59.526 47.619 5.18 0.00 0.00 3.68
193 194 1.838112 ATTCGCATCTGAGGGCAAAA 58.162 45.000 5.18 0.00 0.00 2.44
194 195 0.881118 TTCGCATCTGAGGGCAAAAC 59.119 50.000 5.18 0.00 0.00 2.43
195 196 0.036732 TCGCATCTGAGGGCAAAACT 59.963 50.000 5.18 0.00 0.00 2.66
196 197 0.169672 CGCATCTGAGGGCAAAACTG 59.830 55.000 5.18 0.00 0.00 3.16
197 198 1.538047 GCATCTGAGGGCAAAACTGA 58.462 50.000 0.00 0.00 0.00 3.41
198 199 1.471684 GCATCTGAGGGCAAAACTGAG 59.528 52.381 0.00 0.00 0.00 3.35
199 200 1.471684 CATCTGAGGGCAAAACTGAGC 59.528 52.381 0.00 0.00 0.00 4.26
200 201 0.473755 TCTGAGGGCAAAACTGAGCA 59.526 50.000 0.00 0.00 0.00 4.26
201 202 0.595095 CTGAGGGCAAAACTGAGCAC 59.405 55.000 0.00 0.00 0.00 4.40
202 203 0.106769 TGAGGGCAAAACTGAGCACA 60.107 50.000 0.00 0.00 36.38 4.57
203 204 1.251251 GAGGGCAAAACTGAGCACAT 58.749 50.000 0.00 0.00 36.38 3.21
204 205 0.963962 AGGGCAAAACTGAGCACATG 59.036 50.000 0.00 0.00 36.38 3.21
205 206 0.037975 GGGCAAAACTGAGCACATGG 60.038 55.000 0.00 0.00 33.42 3.66
206 207 0.961019 GGCAAAACTGAGCACATGGA 59.039 50.000 0.00 0.00 0.00 3.41
207 208 1.336240 GGCAAAACTGAGCACATGGAC 60.336 52.381 0.00 0.00 0.00 4.02
208 209 1.337703 GCAAAACTGAGCACATGGACA 59.662 47.619 0.00 0.00 0.00 4.02
209 210 2.859806 GCAAAACTGAGCACATGGACAC 60.860 50.000 0.00 0.00 0.00 3.67
210 211 1.609208 AAACTGAGCACATGGACACC 58.391 50.000 0.00 0.00 0.00 4.16
211 212 0.473755 AACTGAGCACATGGACACCA 59.526 50.000 0.00 0.00 38.19 4.17
212 213 0.250467 ACTGAGCACATGGACACCAC 60.250 55.000 0.00 0.00 35.80 4.16
213 214 0.035881 CTGAGCACATGGACACCACT 59.964 55.000 0.00 0.00 35.80 4.00
214 215 0.250424 TGAGCACATGGACACCACTG 60.250 55.000 0.00 0.00 35.80 3.66
215 216 0.035317 GAGCACATGGACACCACTGA 59.965 55.000 0.00 0.00 35.80 3.41
216 217 0.035881 AGCACATGGACACCACTGAG 59.964 55.000 0.00 0.00 35.80 3.35
217 218 0.957395 GCACATGGACACCACTGAGG 60.957 60.000 0.00 0.00 45.67 3.86
218 219 0.321919 CACATGGACACCACTGAGGG 60.322 60.000 0.00 0.00 43.89 4.30
219 220 1.377725 CATGGACACCACTGAGGGC 60.378 63.158 0.00 0.00 43.89 5.19
220 221 1.847506 ATGGACACCACTGAGGGCA 60.848 57.895 0.00 0.00 43.89 5.36
221 222 1.426251 ATGGACACCACTGAGGGCAA 61.426 55.000 0.00 0.00 43.89 4.52
222 223 1.150536 GGACACCACTGAGGGCAAA 59.849 57.895 0.00 0.00 43.89 3.68
223 224 0.467290 GGACACCACTGAGGGCAAAA 60.467 55.000 0.00 0.00 43.89 2.44
224 225 0.954452 GACACCACTGAGGGCAAAAG 59.046 55.000 0.00 0.00 43.89 2.27
225 226 0.468029 ACACCACTGAGGGCAAAAGG 60.468 55.000 0.00 0.00 43.89 3.11
226 227 0.178992 CACCACTGAGGGCAAAAGGA 60.179 55.000 0.00 0.00 43.89 3.36
227 228 0.779997 ACCACTGAGGGCAAAAGGAT 59.220 50.000 0.00 0.00 43.89 3.24
228 229 1.992557 ACCACTGAGGGCAAAAGGATA 59.007 47.619 0.00 0.00 43.89 2.59
229 230 2.378547 ACCACTGAGGGCAAAAGGATAA 59.621 45.455 0.00 0.00 43.89 1.75
230 231 3.011708 ACCACTGAGGGCAAAAGGATAAT 59.988 43.478 0.00 0.00 43.89 1.28
231 232 4.026052 CCACTGAGGGCAAAAGGATAATT 58.974 43.478 0.00 0.00 0.00 1.40
232 233 5.200483 CCACTGAGGGCAAAAGGATAATTA 58.800 41.667 0.00 0.00 0.00 1.40
233 234 5.656416 CCACTGAGGGCAAAAGGATAATTAA 59.344 40.000 0.00 0.00 0.00 1.40
234 235 6.405842 CCACTGAGGGCAAAAGGATAATTAAC 60.406 42.308 0.00 0.00 0.00 2.01
235 236 5.656859 ACTGAGGGCAAAAGGATAATTAACC 59.343 40.000 3.60 3.60 0.00 2.85
236 237 4.959839 TGAGGGCAAAAGGATAATTAACCC 59.040 41.667 8.09 3.96 34.91 4.11
237 238 5.220872 AGGGCAAAAGGATAATTAACCCT 57.779 39.130 8.09 6.12 40.37 4.34
238 239 5.599751 AGGGCAAAAGGATAATTAACCCTT 58.400 37.500 13.69 13.69 42.56 3.95
239 240 6.747931 AGGGCAAAAGGATAATTAACCCTTA 58.252 36.000 17.67 0.00 42.56 2.69
240 241 7.193338 AGGGCAAAAGGATAATTAACCCTTAA 58.807 34.615 17.67 0.00 42.56 1.85
241 242 7.680739 AGGGCAAAAGGATAATTAACCCTTAAA 59.319 33.333 17.67 0.00 42.56 1.52
307 309 6.347696 TGGAACAACTCTACCGTTTTCTTTA 58.652 36.000 0.00 0.00 31.92 1.85
327 329 3.963428 ACGAAGGAACAACTCTAGCAT 57.037 42.857 0.00 0.00 0.00 3.79
329 331 4.246458 ACGAAGGAACAACTCTAGCATTC 58.754 43.478 0.00 0.00 0.00 2.67
382 384 3.761897 TGGTGGGTTTTCTATCAAGTGG 58.238 45.455 0.00 0.00 0.00 4.00
383 385 3.396276 TGGTGGGTTTTCTATCAAGTGGA 59.604 43.478 0.00 0.00 0.00 4.02
384 386 4.010349 GGTGGGTTTTCTATCAAGTGGAG 58.990 47.826 0.00 0.00 0.00 3.86
385 387 4.263331 GGTGGGTTTTCTATCAAGTGGAGA 60.263 45.833 0.00 0.00 0.00 3.71
386 388 4.938226 GTGGGTTTTCTATCAAGTGGAGAG 59.062 45.833 0.00 0.00 36.15 3.20
387 389 4.597507 TGGGTTTTCTATCAAGTGGAGAGT 59.402 41.667 0.00 0.00 36.24 3.24
388 390 5.073144 TGGGTTTTCTATCAAGTGGAGAGTT 59.927 40.000 0.00 0.00 36.24 3.01
389 391 5.412904 GGGTTTTCTATCAAGTGGAGAGTTG 59.587 44.000 0.00 0.00 36.24 3.16
390 392 6.231211 GGTTTTCTATCAAGTGGAGAGTTGA 58.769 40.000 0.00 0.00 44.04 3.18
392 394 8.041323 GGTTTTCTATCAAGTGGAGAGTTGATA 58.959 37.037 10.47 10.47 46.28 2.15
400 402 3.378742 AGTGGAGAGTTGATAGCACTACG 59.621 47.826 0.00 0.00 0.00 3.51
410 412 9.459640 GAGTTGATAGCACTACGTGATAATAAA 57.540 33.333 0.00 0.00 37.94 1.40
498 501 2.522185 AGTAGCAAACTCACCGTAGGA 58.478 47.619 0.00 0.00 44.09 2.94
518 521 0.318762 GTCCTGCTATCGATGGGACC 59.681 60.000 20.78 4.76 40.14 4.46
519 522 1.179174 TCCTGCTATCGATGGGACCG 61.179 60.000 8.54 0.00 0.00 4.79
542 546 5.393027 CGCACTGGCTTCCACTTAAAAATAT 60.393 40.000 0.00 0.00 38.10 1.28
543 547 6.183360 CGCACTGGCTTCCACTTAAAAATATA 60.183 38.462 0.00 0.00 38.10 0.86
544 548 6.972901 GCACTGGCTTCCACTTAAAAATATAC 59.027 38.462 0.00 0.00 36.96 1.47
703 715 6.900194 TGATCCTCCCTAAACCTTCAATAAG 58.100 40.000 0.00 0.00 0.00 1.73
713 725 8.211629 CCTAAACCTTCAATAAGTAGCTGGTAT 58.788 37.037 0.00 0.00 0.00 2.73
715 727 8.879427 AAACCTTCAATAAGTAGCTGGTATTT 57.121 30.769 0.00 0.44 0.00 1.40
716 728 9.969001 AAACCTTCAATAAGTAGCTGGTATTTA 57.031 29.630 0.00 4.64 0.00 1.40
722 734 9.903682 TCAATAAGTAGCTGGTATTTATACGTC 57.096 33.333 12.91 0.00 34.11 4.34
723 735 9.687210 CAATAAGTAGCTGGTATTTATACGTCA 57.313 33.333 12.91 0.00 34.11 4.35
724 736 9.688592 AATAAGTAGCTGGTATTTATACGTCAC 57.311 33.333 12.91 0.00 34.11 3.67
726 738 7.286215 AGTAGCTGGTATTTATACGTCACAT 57.714 36.000 0.00 0.00 34.11 3.21
727 739 7.723324 AGTAGCTGGTATTTATACGTCACATT 58.277 34.615 0.00 0.00 34.11 2.71
728 740 8.202137 AGTAGCTGGTATTTATACGTCACATTT 58.798 33.333 0.00 0.00 34.11 2.32
729 741 7.859325 AGCTGGTATTTATACGTCACATTTT 57.141 32.000 0.00 0.00 34.11 1.82
730 742 8.276252 AGCTGGTATTTATACGTCACATTTTT 57.724 30.769 0.00 0.00 34.11 1.94
843 869 3.853330 CGGGATCTGCACGCGTTG 61.853 66.667 10.22 6.68 36.12 4.10
862 888 2.598632 GCCAAAGCGATCGATCCCG 61.599 63.158 21.57 10.83 37.07 5.14
1038 1070 1.296715 CAGCCAGCGTCTAACCCTT 59.703 57.895 0.00 0.00 0.00 3.95
1039 1071 0.741221 CAGCCAGCGTCTAACCCTTC 60.741 60.000 0.00 0.00 0.00 3.46
1040 1072 1.810030 GCCAGCGTCTAACCCTTCG 60.810 63.158 0.00 0.00 0.00 3.79
1041 1073 1.888018 CCAGCGTCTAACCCTTCGA 59.112 57.895 0.00 0.00 0.00 3.71
1042 1074 0.458025 CCAGCGTCTAACCCTTCGAC 60.458 60.000 0.00 0.00 0.00 4.20
1081 1113 1.448540 ACGAGCAAGCTTCCATCGG 60.449 57.895 21.68 2.78 37.69 4.18
1601 1636 2.117156 GTGGCCGCAGCATGAGAAT 61.117 57.895 12.58 0.00 38.60 2.40
1624 1659 1.433064 CCATGGACATTTTCGGCGG 59.567 57.895 5.56 0.00 0.00 6.13
1832 1867 0.603569 GCTTTGACTCCCGAGACTCA 59.396 55.000 2.82 0.00 0.00 3.41
1872 1907 8.678199 AGTTTTCTTCTTCTTTTTACAGGTCTG 58.322 33.333 0.00 0.00 0.00 3.51
1937 1973 2.943690 TGCAGTTAACCTAAACGTGCAA 59.056 40.909 12.42 0.00 38.91 4.08
1945 1981 7.760340 AGTTAACCTAAACGTGCAAAATTTCAA 59.240 29.630 0.88 0.00 34.46 2.69
1995 2032 4.545610 TGCATTGCTAGTTTTAACACTGC 58.454 39.130 10.49 6.83 38.67 4.40
1999 2036 6.404734 GCATTGCTAGTTTTAACACTGCCTAT 60.405 38.462 4.49 1.58 33.92 2.57
2005 2042 5.416947 AGTTTTAACACTGCCTATAGACGG 58.583 41.667 0.00 0.00 0.00 4.79
2006 2043 4.395959 TTTAACACTGCCTATAGACGGG 57.604 45.455 0.00 0.00 0.00 5.28
2062 2100 5.051508 CGGAAAATGCAAAAGTGAAACAGAG 60.052 40.000 0.00 0.00 41.43 3.35
2082 2121 6.072175 ACAGAGAATTTGTATGGCGCTTAAAA 60.072 34.615 7.64 2.02 0.00 1.52
2084 2123 7.008628 CAGAGAATTTGTATGGCGCTTAAAAAG 59.991 37.037 7.64 0.00 0.00 2.27
2141 2182 9.394477 GGTTACAGTTCATTTCAAATACAGTTC 57.606 33.333 0.00 0.00 0.00 3.01
2154 2195 6.868864 TCAAATACAGTTCTGCTAAGTCTCAC 59.131 38.462 0.00 0.00 0.00 3.51
2160 2201 3.060736 TCTGCTAAGTCTCACTCGACT 57.939 47.619 0.00 0.00 45.73 4.18
2195 2236 5.378292 TGTCTCTGTCGATGCTATATTCC 57.622 43.478 0.00 0.00 0.00 3.01
2201 2242 6.997655 TCTGTCGATGCTATATTCCTTTGAT 58.002 36.000 0.00 0.00 0.00 2.57
2202 2243 7.093354 TCTGTCGATGCTATATTCCTTTGATC 58.907 38.462 0.00 0.00 0.00 2.92
2205 2246 7.386025 TGTCGATGCTATATTCCTTTGATCTTG 59.614 37.037 0.00 0.00 0.00 3.02
2206 2247 6.369890 TCGATGCTATATTCCTTTGATCTTGC 59.630 38.462 0.00 0.00 0.00 4.01
2207 2248 6.148315 CGATGCTATATTCCTTTGATCTTGCA 59.852 38.462 0.00 0.00 0.00 4.08
2208 2249 7.148289 CGATGCTATATTCCTTTGATCTTGCAT 60.148 37.037 0.00 0.00 38.67 3.96
2209 2250 7.210718 TGCTATATTCCTTTGATCTTGCATG 57.789 36.000 0.00 0.00 0.00 4.06
2222 2267 5.935206 TGATCTTGCATGGTTCGTACTAAAA 59.065 36.000 0.00 0.00 0.00 1.52
2228 2273 7.630470 TGCATGGTTCGTACTAAAATTTTTG 57.370 32.000 9.06 9.76 0.00 2.44
2234 2279 8.248945 TGGTTCGTACTAAAATTTTTGTTTCCA 58.751 29.630 20.33 17.07 0.00 3.53
2293 2338 5.817816 CACTTGACTGAGACTTGGTTAAGTT 59.182 40.000 12.68 0.00 46.79 2.66
2295 2340 6.884836 ACTTGACTGAGACTTGGTTAAGTTTT 59.115 34.615 10.75 0.00 46.79 2.43
2297 2342 8.795842 TTGACTGAGACTTGGTTAAGTTTTAA 57.204 30.769 0.00 0.00 46.79 1.52
2299 2344 8.836413 TGACTGAGACTTGGTTAAGTTTTAATG 58.164 33.333 0.00 0.00 46.79 1.90
2303 2348 7.996644 TGAGACTTGGTTAAGTTTTAATGGACT 59.003 33.333 0.00 0.00 46.79 3.85
2306 2351 8.528044 ACTTGGTTAAGTTTTAATGGACTGAA 57.472 30.769 0.00 0.00 44.57 3.02
2339 2384 6.199908 CACAACCTTTCAAATATCGCAAACAA 59.800 34.615 0.00 0.00 0.00 2.83
2363 2408 2.359900 GCTACATCCAAGTCCCTTGTG 58.640 52.381 3.53 0.00 39.58 3.33
2404 2449 2.735134 GTCCTATGTTTTCGCGTTGAGT 59.265 45.455 5.77 0.00 0.00 3.41
2406 2451 3.185594 TCCTATGTTTTCGCGTTGAGTTG 59.814 43.478 5.77 0.00 0.00 3.16
2407 2452 3.059188 CCTATGTTTTCGCGTTGAGTTGT 60.059 43.478 5.77 0.00 0.00 3.32
2408 2453 2.445453 TGTTTTCGCGTTGAGTTGTC 57.555 45.000 5.77 0.00 0.00 3.18
2409 2454 2.004017 TGTTTTCGCGTTGAGTTGTCT 58.996 42.857 5.77 0.00 0.00 3.41
2410 2455 3.188492 TGTTTTCGCGTTGAGTTGTCTA 58.812 40.909 5.77 0.00 0.00 2.59
2411 2456 3.244345 TGTTTTCGCGTTGAGTTGTCTAG 59.756 43.478 5.77 0.00 0.00 2.43
2412 2457 3.358707 TTTCGCGTTGAGTTGTCTAGA 57.641 42.857 5.77 0.00 0.00 2.43
2413 2458 2.327081 TCGCGTTGAGTTGTCTAGAC 57.673 50.000 16.32 16.32 0.00 2.59
2573 2726 2.485426 CACAGAGCAACAATGTTCCGAT 59.515 45.455 0.00 0.00 37.49 4.18
2595 2748 6.570957 CGATGGTTTACACAAGTAGTACTCCA 60.571 42.308 2.58 4.51 32.77 3.86
2621 2774 5.770162 CACAAGGAGGGAAGAAACAATTACT 59.230 40.000 0.00 0.00 0.00 2.24
2622 2775 6.940298 CACAAGGAGGGAAGAAACAATTACTA 59.060 38.462 0.00 0.00 0.00 1.82
2623 2776 7.119846 CACAAGGAGGGAAGAAACAATTACTAG 59.880 40.741 0.00 0.00 0.00 2.57
2624 2777 5.746284 AGGAGGGAAGAAACAATTACTAGC 58.254 41.667 0.00 0.00 0.00 3.42
2644 2797 3.200825 AGCTAGGCTGGAAGAAATAGCAA 59.799 43.478 0.43 0.00 40.80 3.91
2659 2817 7.796054 AGAAATAGCAACCTGAGCTAGATAAA 58.204 34.615 0.00 0.00 46.63 1.40
2683 2841 7.527084 AGCAGAATAAACGTTACAATCTCTC 57.473 36.000 0.00 0.00 0.00 3.20
2735 2894 3.403038 TGCTGCCTACTTTTCTTCAGAC 58.597 45.455 0.00 0.00 0.00 3.51
2784 2943 2.107204 AGTCAAGGATGCTTTGTCTGGT 59.893 45.455 0.00 0.00 0.00 4.00
2834 2993 7.877612 TCAACATATATGCACGGATATTCAAGT 59.122 33.333 12.79 0.00 0.00 3.16
2907 3067 7.921214 GCTGGAATAATAAAGAAAAAGGGCTAC 59.079 37.037 0.00 0.00 0.00 3.58
2908 3068 9.190317 CTGGAATAATAAAGAAAAAGGGCTACT 57.810 33.333 0.00 0.00 0.00 2.57
2909 3069 8.966868 TGGAATAATAAAGAAAAAGGGCTACTG 58.033 33.333 0.00 0.00 0.00 2.74
2910 3070 8.967918 GGAATAATAAAGAAAAAGGGCTACTGT 58.032 33.333 0.00 0.00 0.00 3.55
2924 3084 3.068732 GGCTACTGTAGATCAGATGCACA 59.931 47.826 18.64 0.00 46.27 4.57
2937 3097 0.467844 ATGCACACCACACCACACAT 60.468 50.000 0.00 0.00 0.00 3.21
2950 3110 0.833287 CACACATGCCCTAGCTAGGT 59.167 55.000 33.00 16.27 42.03 3.08
3015 3175 2.468831 GTTTTCAAGCATGTGCCGAAA 58.531 42.857 13.18 13.18 43.38 3.46
3016 3176 2.863137 GTTTTCAAGCATGTGCCGAAAA 59.137 40.909 20.18 20.18 43.98 2.29
3017 3177 2.132740 TTCAAGCATGTGCCGAAAAC 57.867 45.000 0.57 0.00 43.38 2.43
3097 3259 1.302271 GGGTCCGGTTTCTGTGTCC 60.302 63.158 0.00 0.00 0.00 4.02
3148 3320 3.112075 GCGCGCACTAGCTGTTGA 61.112 61.111 29.10 0.00 39.10 3.18
3155 3327 1.457303 GCACTAGCTGTTGAGTTGTCG 59.543 52.381 0.00 0.00 37.91 4.35
3157 3329 0.710567 CTAGCTGTTGAGTTGTCGCG 59.289 55.000 0.00 0.00 0.00 5.87
3158 3330 0.312729 TAGCTGTTGAGTTGTCGCGA 59.687 50.000 3.71 3.71 0.00 5.87
3162 3334 0.234625 TGTTGAGTTGTCGCGATTGC 59.765 50.000 14.06 5.29 37.91 3.56
3164 3336 0.602638 TTGAGTTGTCGCGATTGCCT 60.603 50.000 14.06 6.14 38.08 4.75
3166 3338 0.095417 GAGTTGTCGCGATTGCCTTC 59.905 55.000 14.06 2.21 38.08 3.46
3168 3340 1.302112 TTGTCGCGATTGCCTTCCA 60.302 52.632 14.06 0.00 38.08 3.53
3169 3341 1.573829 TTGTCGCGATTGCCTTCCAC 61.574 55.000 14.06 0.00 38.08 4.02
3171 3343 0.459585 GTCGCGATTGCCTTCCACTA 60.460 55.000 14.06 0.00 38.08 2.74
3245 3430 9.796120 TTAAACTGAGGTTAGTTCAAAATTGTG 57.204 29.630 0.00 0.00 39.86 3.33
3281 3466 9.975218 ATGAATCAAAGGTAGTAGTAAATTGGT 57.025 29.630 0.00 0.00 0.00 3.67
3348 3533 5.601662 GGTGAGAATCCTGAATACGAATCA 58.398 41.667 0.00 0.00 0.00 2.57
3366 3555 5.455525 CGAATCAAATATCGTTTTCTTGCCC 59.544 40.000 0.00 0.00 34.48 5.36
3382 3571 4.954970 CCTGTGGCCCGTTGTGCT 62.955 66.667 0.00 0.00 0.00 4.40
3409 3599 0.889186 CCGGCGGGAAGAATAATGGG 60.889 60.000 20.56 0.00 34.06 4.00
3452 3645 4.319235 GAGCATCTTTGTTCGACTCTTG 57.681 45.455 0.00 0.00 0.00 3.02
3453 3646 2.481952 AGCATCTTTGTTCGACTCTTGC 59.518 45.455 0.00 0.00 0.00 4.01
3454 3647 2.224079 GCATCTTTGTTCGACTCTTGCA 59.776 45.455 0.00 0.00 0.00 4.08
3664 3865 1.698506 TTTTCCATCGGCCACAACTT 58.301 45.000 2.24 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.334676 CCCCTGCAACTAAATCCCCA 59.665 55.000 0.00 0.00 0.00 4.96
3 4 1.043116 GCCCCTGCAACTAAATCCCC 61.043 60.000 0.00 0.00 37.47 4.81
4 5 1.043116 GGCCCCTGCAACTAAATCCC 61.043 60.000 0.00 0.00 40.13 3.85
5 6 0.033109 AGGCCCCTGCAACTAAATCC 60.033 55.000 0.00 0.00 40.13 3.01
6 7 2.298610 GTAGGCCCCTGCAACTAAATC 58.701 52.381 0.00 0.00 40.13 2.17
7 8 1.638589 TGTAGGCCCCTGCAACTAAAT 59.361 47.619 0.00 0.00 40.13 1.40
8 9 1.068948 TGTAGGCCCCTGCAACTAAA 58.931 50.000 0.00 0.00 40.13 1.85
9 10 1.064758 CATGTAGGCCCCTGCAACTAA 60.065 52.381 9.16 0.00 41.62 2.24
10 11 0.546122 CATGTAGGCCCCTGCAACTA 59.454 55.000 9.16 0.00 41.62 2.24
11 12 1.304282 CATGTAGGCCCCTGCAACT 59.696 57.895 9.16 0.00 41.62 3.16
12 13 1.000896 ACATGTAGGCCCCTGCAAC 60.001 57.895 9.16 0.00 41.62 4.17
13 14 1.302949 GACATGTAGGCCCCTGCAA 59.697 57.895 9.16 0.00 41.62 4.08
14 15 1.913951 CTGACATGTAGGCCCCTGCA 61.914 60.000 7.56 7.56 42.43 4.41
15 16 1.153086 CTGACATGTAGGCCCCTGC 60.153 63.158 0.00 0.00 0.00 4.85
16 17 1.153086 GCTGACATGTAGGCCCCTG 60.153 63.158 0.00 0.00 0.00 4.45
17 18 1.307343 AGCTGACATGTAGGCCCCT 60.307 57.895 15.90 0.00 0.00 4.79
18 19 1.147153 GAGCTGACATGTAGGCCCC 59.853 63.158 15.90 7.49 0.00 5.80
19 20 1.147153 GGAGCTGACATGTAGGCCC 59.853 63.158 15.90 13.36 0.00 5.80
20 21 1.227380 CGGAGCTGACATGTAGGCC 60.227 63.158 15.90 0.00 0.00 5.19
21 22 1.227380 CCGGAGCTGACATGTAGGC 60.227 63.158 12.80 12.80 0.00 3.93
22 23 0.103208 GTCCGGAGCTGACATGTAGG 59.897 60.000 3.06 0.00 32.91 3.18
23 24 0.103208 GGTCCGGAGCTGACATGTAG 59.897 60.000 26.19 0.00 34.36 2.74
24 25 1.327690 GGGTCCGGAGCTGACATGTA 61.328 60.000 31.09 0.00 34.36 2.29
25 26 2.660064 GGGTCCGGAGCTGACATGT 61.660 63.158 31.09 0.00 34.36 3.21
26 27 2.187946 GGGTCCGGAGCTGACATG 59.812 66.667 31.09 0.00 34.36 3.21
27 28 2.284625 TGGGTCCGGAGCTGACAT 60.285 61.111 31.09 0.00 34.36 3.06
28 29 3.311110 GTGGGTCCGGAGCTGACA 61.311 66.667 31.09 18.96 34.36 3.58
29 30 4.436998 CGTGGGTCCGGAGCTGAC 62.437 72.222 31.09 24.80 0.00 3.51
30 31 4.988716 ACGTGGGTCCGGAGCTGA 62.989 66.667 31.09 16.66 0.00 4.26
31 32 4.436998 GACGTGGGTCCGGAGCTG 62.437 72.222 31.09 22.67 37.19 4.24
46 47 4.388499 ATGTGGGACCGCGTGGAC 62.388 66.667 24.59 16.46 39.21 4.02
47 48 4.386951 CATGTGGGACCGCGTGGA 62.387 66.667 24.59 0.00 39.13 4.02
48 49 2.789845 TTACATGTGGGACCGCGTGG 62.790 60.000 23.59 14.93 44.89 4.94
49 50 1.358725 CTTACATGTGGGACCGCGTG 61.359 60.000 19.61 19.61 45.75 5.34
50 51 1.079405 CTTACATGTGGGACCGCGT 60.079 57.895 9.11 0.00 0.00 6.01
51 52 2.461110 GCTTACATGTGGGACCGCG 61.461 63.158 9.11 0.00 0.00 6.46
52 53 1.078426 AGCTTACATGTGGGACCGC 60.078 57.895 9.11 1.92 0.00 5.68
53 54 0.537188 AGAGCTTACATGTGGGACCG 59.463 55.000 9.11 0.00 0.00 4.79
54 55 1.407437 CCAGAGCTTACATGTGGGACC 60.407 57.143 9.11 0.00 0.00 4.46
55 56 1.555075 TCCAGAGCTTACATGTGGGAC 59.445 52.381 9.11 0.00 0.00 4.46
56 57 1.555075 GTCCAGAGCTTACATGTGGGA 59.445 52.381 9.11 1.29 0.00 4.37
57 58 1.407437 GGTCCAGAGCTTACATGTGGG 60.407 57.143 9.11 1.90 0.00 4.61
58 59 1.407437 GGGTCCAGAGCTTACATGTGG 60.407 57.143 9.11 2.29 0.00 4.17
59 60 1.278985 TGGGTCCAGAGCTTACATGTG 59.721 52.381 9.11 0.00 0.00 3.21
60 61 1.279271 GTGGGTCCAGAGCTTACATGT 59.721 52.381 2.69 2.69 0.00 3.21
61 62 1.278985 TGTGGGTCCAGAGCTTACATG 59.721 52.381 0.00 0.00 0.00 3.21
62 63 1.656587 TGTGGGTCCAGAGCTTACAT 58.343 50.000 0.00 0.00 0.00 2.29
63 64 1.071699 GTTGTGGGTCCAGAGCTTACA 59.928 52.381 0.00 0.92 0.00 2.41
64 65 1.348036 AGTTGTGGGTCCAGAGCTTAC 59.652 52.381 0.00 0.00 27.07 2.34
65 66 1.729586 AGTTGTGGGTCCAGAGCTTA 58.270 50.000 0.00 0.00 27.07 3.09
66 67 1.348036 GTAGTTGTGGGTCCAGAGCTT 59.652 52.381 8.62 0.00 33.35 3.74
67 68 0.977395 GTAGTTGTGGGTCCAGAGCT 59.023 55.000 8.41 8.41 35.26 4.09
68 69 0.977395 AGTAGTTGTGGGTCCAGAGC 59.023 55.000 0.00 0.00 0.00 4.09
69 70 3.367087 CGTTAGTAGTTGTGGGTCCAGAG 60.367 52.174 0.00 0.00 0.00 3.35
70 71 2.559668 CGTTAGTAGTTGTGGGTCCAGA 59.440 50.000 0.00 0.00 0.00 3.86
71 72 2.929592 GCGTTAGTAGTTGTGGGTCCAG 60.930 54.545 0.00 0.00 0.00 3.86
72 73 1.001181 GCGTTAGTAGTTGTGGGTCCA 59.999 52.381 0.00 0.00 0.00 4.02
73 74 1.673923 GGCGTTAGTAGTTGTGGGTCC 60.674 57.143 0.00 0.00 0.00 4.46
74 75 1.718396 GGCGTTAGTAGTTGTGGGTC 58.282 55.000 0.00 0.00 0.00 4.46
75 76 0.037975 CGGCGTTAGTAGTTGTGGGT 60.038 55.000 0.00 0.00 0.00 4.51
76 77 0.738412 CCGGCGTTAGTAGTTGTGGG 60.738 60.000 6.01 0.00 0.00 4.61
77 78 1.356527 GCCGGCGTTAGTAGTTGTGG 61.357 60.000 12.58 0.00 0.00 4.17
78 79 1.680105 CGCCGGCGTTAGTAGTTGTG 61.680 60.000 39.71 7.80 34.35 3.33
79 80 1.444895 CGCCGGCGTTAGTAGTTGT 60.445 57.895 39.71 0.00 34.35 3.32
80 81 2.162754 CCGCCGGCGTTAGTAGTTG 61.163 63.158 43.12 23.38 37.81 3.16
81 82 2.182537 CCGCCGGCGTTAGTAGTT 59.817 61.111 43.12 0.00 37.81 2.24
82 83 2.751436 TCCGCCGGCGTTAGTAGT 60.751 61.111 43.12 0.00 37.81 2.73
83 84 2.278401 GTCCGCCGGCGTTAGTAG 60.278 66.667 43.12 28.43 37.81 2.57
84 85 4.178214 CGTCCGCCGGCGTTAGTA 62.178 66.667 43.12 22.37 37.81 1.82
93 94 4.143333 AGTCCATTCCGTCCGCCG 62.143 66.667 0.00 0.00 0.00 6.46
94 95 2.202892 GAGTCCATTCCGTCCGCC 60.203 66.667 0.00 0.00 0.00 6.13
95 96 0.672401 TTTGAGTCCATTCCGTCCGC 60.672 55.000 0.00 0.00 0.00 5.54
96 97 2.024176 ATTTGAGTCCATTCCGTCCG 57.976 50.000 0.00 0.00 0.00 4.79
97 98 3.815401 CCATATTTGAGTCCATTCCGTCC 59.185 47.826 0.00 0.00 0.00 4.79
98 99 3.251004 GCCATATTTGAGTCCATTCCGTC 59.749 47.826 0.00 0.00 0.00 4.79
99 100 3.214328 GCCATATTTGAGTCCATTCCGT 58.786 45.455 0.00 0.00 0.00 4.69
100 101 2.554032 GGCCATATTTGAGTCCATTCCG 59.446 50.000 0.00 0.00 0.00 4.30
101 102 2.554032 CGGCCATATTTGAGTCCATTCC 59.446 50.000 2.24 0.00 0.00 3.01
102 103 3.214328 ACGGCCATATTTGAGTCCATTC 58.786 45.455 2.24 0.00 0.00 2.67
103 104 3.297134 ACGGCCATATTTGAGTCCATT 57.703 42.857 2.24 0.00 0.00 3.16
104 105 3.297134 AACGGCCATATTTGAGTCCAT 57.703 42.857 2.24 0.00 0.00 3.41
105 106 2.752354 CAAACGGCCATATTTGAGTCCA 59.248 45.455 15.73 0.00 37.91 4.02
106 107 2.099098 CCAAACGGCCATATTTGAGTCC 59.901 50.000 20.38 0.00 37.91 3.85
107 108 2.479560 GCCAAACGGCCATATTTGAGTC 60.480 50.000 20.38 9.19 44.46 3.36
108 109 1.476488 GCCAAACGGCCATATTTGAGT 59.524 47.619 20.38 0.00 44.46 3.41
109 110 2.208326 GCCAAACGGCCATATTTGAG 57.792 50.000 20.38 13.43 44.46 3.02
120 121 1.804326 CTACGACGAGGCCAAACGG 60.804 63.158 18.10 6.78 0.00 4.44
121 122 0.665369 AACTACGACGAGGCCAAACG 60.665 55.000 5.01 10.64 0.00 3.60
122 123 0.788391 CAACTACGACGAGGCCAAAC 59.212 55.000 5.01 0.00 0.00 2.93
123 124 0.947180 GCAACTACGACGAGGCCAAA 60.947 55.000 5.01 0.00 0.00 3.28
124 125 1.373748 GCAACTACGACGAGGCCAA 60.374 57.895 5.01 0.00 0.00 4.52
125 126 2.260434 GCAACTACGACGAGGCCA 59.740 61.111 5.01 0.00 0.00 5.36
126 127 1.805945 CAGCAACTACGACGAGGCC 60.806 63.158 0.00 0.00 0.00 5.19
127 128 1.080705 ACAGCAACTACGACGAGGC 60.081 57.895 0.00 0.00 0.00 4.70
128 129 1.344942 GCACAGCAACTACGACGAGG 61.345 60.000 0.00 0.00 0.00 4.63
129 130 0.387367 AGCACAGCAACTACGACGAG 60.387 55.000 0.00 0.00 0.00 4.18
130 131 0.386858 GAGCACAGCAACTACGACGA 60.387 55.000 0.00 0.00 0.00 4.20
131 132 1.665544 CGAGCACAGCAACTACGACG 61.666 60.000 0.00 0.00 0.00 5.12
132 133 1.344942 CCGAGCACAGCAACTACGAC 61.345 60.000 0.00 0.00 0.00 4.34
133 134 1.080772 CCGAGCACAGCAACTACGA 60.081 57.895 0.00 0.00 0.00 3.43
134 135 0.458543 ATCCGAGCACAGCAACTACG 60.459 55.000 0.00 0.00 0.00 3.51
135 136 1.726853 AATCCGAGCACAGCAACTAC 58.273 50.000 0.00 0.00 0.00 2.73
136 137 2.159099 CCTAATCCGAGCACAGCAACTA 60.159 50.000 0.00 0.00 0.00 2.24
137 138 1.406069 CCTAATCCGAGCACAGCAACT 60.406 52.381 0.00 0.00 0.00 3.16
138 139 1.009829 CCTAATCCGAGCACAGCAAC 58.990 55.000 0.00 0.00 0.00 4.17
139 140 0.107703 CCCTAATCCGAGCACAGCAA 60.108 55.000 0.00 0.00 0.00 3.91
140 141 1.522092 CCCTAATCCGAGCACAGCA 59.478 57.895 0.00 0.00 0.00 4.41
141 142 1.227674 CCCCTAATCCGAGCACAGC 60.228 63.158 0.00 0.00 0.00 4.40
142 143 1.227674 GCCCCTAATCCGAGCACAG 60.228 63.158 0.00 0.00 0.00 3.66
143 144 1.558167 TTGCCCCTAATCCGAGCACA 61.558 55.000 0.00 0.00 32.18 4.57
144 145 0.393808 TTTGCCCCTAATCCGAGCAC 60.394 55.000 0.00 0.00 32.18 4.40
145 146 0.329931 TTTTGCCCCTAATCCGAGCA 59.670 50.000 0.00 0.00 0.00 4.26
146 147 0.738975 GTTTTGCCCCTAATCCGAGC 59.261 55.000 0.00 0.00 0.00 5.03
147 148 2.017049 CAGTTTTGCCCCTAATCCGAG 58.983 52.381 0.00 0.00 0.00 4.63
148 149 1.631388 TCAGTTTTGCCCCTAATCCGA 59.369 47.619 0.00 0.00 0.00 4.55
149 150 2.017049 CTCAGTTTTGCCCCTAATCCG 58.983 52.381 0.00 0.00 0.00 4.18
150 151 2.025321 TCCTCAGTTTTGCCCCTAATCC 60.025 50.000 0.00 0.00 0.00 3.01
151 152 3.017442 GTCCTCAGTTTTGCCCCTAATC 58.983 50.000 0.00 0.00 0.00 1.75
152 153 2.378547 TGTCCTCAGTTTTGCCCCTAAT 59.621 45.455 0.00 0.00 0.00 1.73
153 154 1.777878 TGTCCTCAGTTTTGCCCCTAA 59.222 47.619 0.00 0.00 0.00 2.69
154 155 1.440618 TGTCCTCAGTTTTGCCCCTA 58.559 50.000 0.00 0.00 0.00 3.53
155 156 0.555769 TTGTCCTCAGTTTTGCCCCT 59.444 50.000 0.00 0.00 0.00 4.79
156 157 1.632589 ATTGTCCTCAGTTTTGCCCC 58.367 50.000 0.00 0.00 0.00 5.80
157 158 2.351738 CGAATTGTCCTCAGTTTTGCCC 60.352 50.000 0.00 0.00 0.00 5.36
158 159 2.922335 GCGAATTGTCCTCAGTTTTGCC 60.922 50.000 0.00 0.00 0.00 4.52
159 160 2.287547 TGCGAATTGTCCTCAGTTTTGC 60.288 45.455 0.00 0.00 32.93 3.68
160 161 3.624326 TGCGAATTGTCCTCAGTTTTG 57.376 42.857 0.00 0.00 0.00 2.44
161 162 4.074970 AGATGCGAATTGTCCTCAGTTTT 58.925 39.130 0.00 0.00 0.00 2.43
162 163 3.438087 CAGATGCGAATTGTCCTCAGTTT 59.562 43.478 0.00 0.00 0.00 2.66
163 164 3.005554 CAGATGCGAATTGTCCTCAGTT 58.994 45.455 0.00 0.00 0.00 3.16
164 165 2.234661 TCAGATGCGAATTGTCCTCAGT 59.765 45.455 0.00 0.00 0.00 3.41
165 166 2.864946 CTCAGATGCGAATTGTCCTCAG 59.135 50.000 0.00 0.00 0.00 3.35
166 167 2.419159 CCTCAGATGCGAATTGTCCTCA 60.419 50.000 0.00 0.00 0.00 3.86
167 168 2.208431 CCTCAGATGCGAATTGTCCTC 58.792 52.381 0.00 0.00 0.00 3.71
168 169 1.134280 CCCTCAGATGCGAATTGTCCT 60.134 52.381 0.00 0.00 0.00 3.85
169 170 1.303309 CCCTCAGATGCGAATTGTCC 58.697 55.000 0.00 0.00 0.00 4.02
170 171 0.659957 GCCCTCAGATGCGAATTGTC 59.340 55.000 0.00 0.00 0.00 3.18
171 172 0.035152 TGCCCTCAGATGCGAATTGT 60.035 50.000 0.00 0.00 0.00 2.71
172 173 1.097232 TTGCCCTCAGATGCGAATTG 58.903 50.000 0.00 0.00 0.00 2.32
173 174 1.838112 TTTGCCCTCAGATGCGAATT 58.162 45.000 0.00 0.00 0.00 2.17
174 175 1.474077 GTTTTGCCCTCAGATGCGAAT 59.526 47.619 0.00 0.00 31.25 3.34
175 176 0.881118 GTTTTGCCCTCAGATGCGAA 59.119 50.000 0.00 0.00 0.00 4.70
176 177 0.036732 AGTTTTGCCCTCAGATGCGA 59.963 50.000 0.00 0.00 0.00 5.10
177 178 0.169672 CAGTTTTGCCCTCAGATGCG 59.830 55.000 0.00 0.00 0.00 4.73
178 179 1.471684 CTCAGTTTTGCCCTCAGATGC 59.528 52.381 0.00 0.00 0.00 3.91
179 180 1.471684 GCTCAGTTTTGCCCTCAGATG 59.528 52.381 0.00 0.00 0.00 2.90
180 181 1.074405 TGCTCAGTTTTGCCCTCAGAT 59.926 47.619 0.00 0.00 0.00 2.90
181 182 0.473755 TGCTCAGTTTTGCCCTCAGA 59.526 50.000 0.00 0.00 0.00 3.27
182 183 0.595095 GTGCTCAGTTTTGCCCTCAG 59.405 55.000 0.00 0.00 0.00 3.35
183 184 0.106769 TGTGCTCAGTTTTGCCCTCA 60.107 50.000 0.00 0.00 0.00 3.86
184 185 1.068055 CATGTGCTCAGTTTTGCCCTC 60.068 52.381 0.00 0.00 0.00 4.30
185 186 0.963962 CATGTGCTCAGTTTTGCCCT 59.036 50.000 0.00 0.00 0.00 5.19
186 187 0.037975 CCATGTGCTCAGTTTTGCCC 60.038 55.000 0.00 0.00 0.00 5.36
187 188 0.961019 TCCATGTGCTCAGTTTTGCC 59.039 50.000 0.00 0.00 0.00 4.52
188 189 1.337703 TGTCCATGTGCTCAGTTTTGC 59.662 47.619 0.00 0.00 0.00 3.68
189 190 2.287788 GGTGTCCATGTGCTCAGTTTTG 60.288 50.000 0.00 0.00 0.00 2.44
190 191 1.956477 GGTGTCCATGTGCTCAGTTTT 59.044 47.619 0.00 0.00 0.00 2.43
191 192 1.133823 TGGTGTCCATGTGCTCAGTTT 60.134 47.619 0.00 0.00 0.00 2.66
192 193 0.473755 TGGTGTCCATGTGCTCAGTT 59.526 50.000 0.00 0.00 0.00 3.16
193 194 0.250467 GTGGTGTCCATGTGCTCAGT 60.250 55.000 0.00 0.00 35.28 3.41
194 195 0.035881 AGTGGTGTCCATGTGCTCAG 59.964 55.000 0.00 0.00 35.28 3.35
195 196 0.250424 CAGTGGTGTCCATGTGCTCA 60.250 55.000 0.00 0.00 35.28 4.26
196 197 0.035317 TCAGTGGTGTCCATGTGCTC 59.965 55.000 0.00 0.00 35.28 4.26
197 198 0.035881 CTCAGTGGTGTCCATGTGCT 59.964 55.000 0.00 0.00 35.28 4.40
198 199 0.957395 CCTCAGTGGTGTCCATGTGC 60.957 60.000 0.00 0.00 35.28 4.57
199 200 0.321919 CCCTCAGTGGTGTCCATGTG 60.322 60.000 0.00 0.00 35.28 3.21
200 201 2.069776 CCCTCAGTGGTGTCCATGT 58.930 57.895 0.00 0.00 35.28 3.21
201 202 1.377725 GCCCTCAGTGGTGTCCATG 60.378 63.158 0.00 0.00 35.28 3.66
202 203 1.426251 TTGCCCTCAGTGGTGTCCAT 61.426 55.000 0.00 0.00 35.28 3.41
203 204 1.640593 TTTGCCCTCAGTGGTGTCCA 61.641 55.000 0.00 0.00 0.00 4.02
204 205 0.467290 TTTTGCCCTCAGTGGTGTCC 60.467 55.000 0.00 0.00 0.00 4.02
205 206 0.954452 CTTTTGCCCTCAGTGGTGTC 59.046 55.000 0.00 0.00 0.00 3.67
206 207 0.468029 CCTTTTGCCCTCAGTGGTGT 60.468 55.000 0.00 0.00 0.00 4.16
207 208 0.178992 TCCTTTTGCCCTCAGTGGTG 60.179 55.000 0.00 0.00 0.00 4.17
208 209 0.779997 ATCCTTTTGCCCTCAGTGGT 59.220 50.000 0.00 0.00 0.00 4.16
209 210 2.806945 TATCCTTTTGCCCTCAGTGG 57.193 50.000 0.00 0.00 0.00 4.00
210 211 6.405842 GGTTAATTATCCTTTTGCCCTCAGTG 60.406 42.308 5.46 0.00 0.00 3.66
211 212 5.656859 GGTTAATTATCCTTTTGCCCTCAGT 59.343 40.000 5.46 0.00 0.00 3.41
212 213 5.069119 GGGTTAATTATCCTTTTGCCCTCAG 59.931 44.000 11.51 0.00 0.00 3.35
213 214 4.959839 GGGTTAATTATCCTTTTGCCCTCA 59.040 41.667 11.51 0.00 0.00 3.86
214 215 5.208890 AGGGTTAATTATCCTTTTGCCCTC 58.791 41.667 11.51 0.00 39.57 4.30
215 216 5.220872 AGGGTTAATTATCCTTTTGCCCT 57.779 39.130 11.51 0.00 38.99 5.19
216 217 5.950544 AAGGGTTAATTATCCTTTTGCCC 57.049 39.130 11.51 0.00 37.60 5.36
217 218 9.727859 TTTTTAAGGGTTAATTATCCTTTTGCC 57.272 29.630 19.39 2.47 40.86 4.52
276 278 7.754851 AACGGTAGAGTTGTTCCAAATTATT 57.245 32.000 0.00 0.00 32.39 1.40
298 300 7.012959 AGAGTTGTTCCTTCGTAAAGAAAAC 57.987 36.000 0.00 0.00 38.57 2.43
299 301 7.042254 GCTAGAGTTGTTCCTTCGTAAAGAAAA 60.042 37.037 0.00 0.00 38.57 2.29
307 309 3.963428 ATGCTAGAGTTGTTCCTTCGT 57.037 42.857 0.00 0.00 0.00 3.85
410 412 9.998106 AACAACTTGATATCTTTGTACAGTACT 57.002 29.630 12.07 0.00 31.92 2.73
452 455 9.399797 TCTTGAAACTCATCGTATTACTAGGTA 57.600 33.333 0.00 0.00 0.00 3.08
482 485 1.672145 GGACTCCTACGGTGAGTTTGC 60.672 57.143 3.04 0.00 42.94 3.68
493 496 2.490115 CCATCGATAGCAGGACTCCTAC 59.510 54.545 0.00 0.00 29.64 3.18
498 501 1.333177 GTCCCATCGATAGCAGGACT 58.667 55.000 20.52 0.00 42.38 3.85
502 505 1.373497 GCGGTCCCATCGATAGCAG 60.373 63.158 0.00 0.00 0.00 4.24
518 521 1.234821 TTTAAGTGGAAGCCAGTGCG 58.765 50.000 0.00 0.00 44.33 5.34
519 522 3.726291 TTTTTAAGTGGAAGCCAGTGC 57.274 42.857 0.00 0.00 37.24 4.40
542 546 7.899178 AATTTGATGACACGTGTGAATAGTA 57.101 32.000 28.82 6.14 0.00 1.82
543 547 6.801539 AATTTGATGACACGTGTGAATAGT 57.198 33.333 28.82 1.33 0.00 2.12
544 548 6.524239 CCAAATTTGATGACACGTGTGAATAG 59.476 38.462 28.82 12.60 0.00 1.73
639 645 2.047179 GGGTTGACTCTCCGTGGC 60.047 66.667 0.00 0.00 0.00 5.01
640 646 0.324943 ATTGGGTTGACTCTCCGTGG 59.675 55.000 0.00 0.00 0.00 4.94
703 715 7.941795 AATGTGACGTATAAATACCAGCTAC 57.058 36.000 0.00 0.00 0.00 3.58
727 739 7.649973 ACATGTACTAAAATGTACGGCAAAAA 58.350 30.769 0.00 0.00 44.01 1.94
728 740 7.173562 AGACATGTACTAAAATGTACGGCAAAA 59.826 33.333 0.00 0.00 44.01 2.44
729 741 6.651643 AGACATGTACTAAAATGTACGGCAAA 59.348 34.615 0.00 0.00 44.01 3.68
730 742 6.167685 AGACATGTACTAAAATGTACGGCAA 58.832 36.000 0.00 0.00 44.01 4.52
731 743 5.726397 AGACATGTACTAAAATGTACGGCA 58.274 37.500 0.00 0.00 44.01 5.69
732 744 6.040878 AGAGACATGTACTAAAATGTACGGC 58.959 40.000 0.00 0.00 44.01 5.68
733 745 8.618677 TCTAGAGACATGTACTAAAATGTACGG 58.381 37.037 0.00 0.00 44.01 4.02
843 869 2.254464 GGGATCGATCGCTTTGGCC 61.254 63.158 29.36 15.30 36.87 5.36
862 888 2.107141 CGTAGGGCCAGCTAGCAC 59.893 66.667 18.83 1.18 35.96 4.40
987 1013 1.818785 GGAGCTGAGCTGATGGTGC 60.819 63.158 13.71 0.00 39.88 5.01
1029 1058 0.606401 ACGTCGGTCGAAGGGTTAGA 60.606 55.000 10.58 0.00 42.86 2.10
1038 1070 3.792047 CCGCTGTACGTCGGTCGA 61.792 66.667 15.06 0.00 42.86 4.20
1040 1072 4.409218 TGCCGCTGTACGTCGGTC 62.409 66.667 21.51 15.69 46.79 4.79
1041 1073 4.415332 CTGCCGCTGTACGTCGGT 62.415 66.667 21.51 0.00 46.79 4.69
1081 1113 0.044330 CTAGTAGTCGTCGTCGTCGC 60.044 60.000 7.01 3.07 38.33 5.19
1095 1130 1.818522 GCCGGGAGAAGCTAGCTAGTA 60.819 57.143 19.70 0.00 0.00 1.82
1587 1622 2.719979 GCCATTCTCATGCTGCGG 59.280 61.111 0.00 0.00 0.00 5.69
1601 1636 1.889454 GAAAATGTCCATGGCGCCA 59.111 52.632 34.80 34.80 0.00 5.69
1937 1973 3.806380 TGCAATGCACCTGTTGAAATTT 58.194 36.364 2.72 0.00 31.71 1.82
1945 1981 1.696063 ACTCTTTGCAATGCACCTGT 58.304 45.000 7.72 1.82 38.71 4.00
2062 2100 7.540745 TCTTCTTTTTAAGCGCCATACAAATTC 59.459 33.333 2.29 0.00 0.00 2.17
2154 2195 4.093703 AGACATAACGAAGTCTCAGTCGAG 59.906 45.833 0.00 0.00 45.00 4.04
2180 2221 7.623089 GCAAGATCAAAGGAATATAGCATCGAC 60.623 40.741 0.00 0.00 0.00 4.20
2195 2236 3.837213 ACGAACCATGCAAGATCAAAG 57.163 42.857 0.00 0.00 0.00 2.77
2201 2242 6.811253 AATTTTAGTACGAACCATGCAAGA 57.189 33.333 0.00 0.00 0.00 3.02
2202 2243 7.867445 AAAATTTTAGTACGAACCATGCAAG 57.133 32.000 0.37 0.00 0.00 4.01
2205 2246 7.631915 ACAAAAATTTTAGTACGAACCATGC 57.368 32.000 3.34 0.00 0.00 4.06
2207 2248 9.251792 GGAAACAAAAATTTTAGTACGAACCAT 57.748 29.630 3.34 0.00 0.00 3.55
2208 2249 8.248945 TGGAAACAAAAATTTTAGTACGAACCA 58.751 29.630 3.34 4.75 37.44 3.67
2209 2250 8.631676 TGGAAACAAAAATTTTAGTACGAACC 57.368 30.769 3.34 2.43 37.44 3.62
2263 2308 5.992217 ACCAAGTCTCAGTCAAGTGATTTAC 59.008 40.000 0.00 0.00 0.00 2.01
2264 2309 6.174720 ACCAAGTCTCAGTCAAGTGATTTA 57.825 37.500 0.00 0.00 0.00 1.40
2265 2310 5.041191 ACCAAGTCTCAGTCAAGTGATTT 57.959 39.130 0.00 0.00 0.00 2.17
2266 2311 4.696479 ACCAAGTCTCAGTCAAGTGATT 57.304 40.909 0.00 0.00 0.00 2.57
2267 2312 4.696479 AACCAAGTCTCAGTCAAGTGAT 57.304 40.909 0.00 0.00 0.00 3.06
2268 2313 5.128827 ACTTAACCAAGTCTCAGTCAAGTGA 59.871 40.000 0.00 0.00 41.25 3.41
2269 2314 5.360591 ACTTAACCAAGTCTCAGTCAAGTG 58.639 41.667 0.00 0.00 41.25 3.16
2293 2338 6.785076 TGTGGATAGGTTTCAGTCCATTAAA 58.215 36.000 0.00 0.00 42.27 1.52
2295 2340 6.177610 GTTGTGGATAGGTTTCAGTCCATTA 58.822 40.000 0.00 0.00 42.27 1.90
2297 2342 4.567747 GGTTGTGGATAGGTTTCAGTCCAT 60.568 45.833 0.00 0.00 42.27 3.41
2299 2344 3.009143 AGGTTGTGGATAGGTTTCAGTCC 59.991 47.826 0.00 0.00 0.00 3.85
2303 2348 5.055265 TGAAAGGTTGTGGATAGGTTTCA 57.945 39.130 0.00 0.00 31.71 2.69
2306 2351 7.067008 CGATATTTGAAAGGTTGTGGATAGGTT 59.933 37.037 0.00 0.00 0.00 3.50
2339 2384 0.824759 GGGACTTGGATGTAGCGAGT 59.175 55.000 0.00 0.00 0.00 4.18
2363 2408 3.262420 ACGGCTCATGATGTTGACTTAC 58.738 45.455 0.00 0.00 0.00 2.34
2404 2449 5.883673 GCCTTCTTCTCTAGAGTCTAGACAA 59.116 44.000 23.38 18.75 33.51 3.18
2406 2451 5.433526 TGCCTTCTTCTCTAGAGTCTAGAC 58.566 45.833 23.38 15.41 33.51 2.59
2407 2452 5.702065 TGCCTTCTTCTCTAGAGTCTAGA 57.298 43.478 25.04 25.04 33.51 2.43
2408 2453 5.067283 GGTTGCCTTCTTCTCTAGAGTCTAG 59.933 48.000 19.55 19.55 33.51 2.43
2409 2454 4.951094 GGTTGCCTTCTTCTCTAGAGTCTA 59.049 45.833 19.21 0.00 33.51 2.59
2410 2455 3.767131 GGTTGCCTTCTTCTCTAGAGTCT 59.233 47.826 19.21 0.00 33.51 3.24
2411 2456 3.428316 CGGTTGCCTTCTTCTCTAGAGTC 60.428 52.174 19.21 2.77 33.51 3.36
2412 2457 2.494073 CGGTTGCCTTCTTCTCTAGAGT 59.506 50.000 19.21 0.00 33.51 3.24
2413 2458 2.755655 TCGGTTGCCTTCTTCTCTAGAG 59.244 50.000 13.98 13.98 33.51 2.43
2557 2710 1.909700 ACCATCGGAACATTGTTGCT 58.090 45.000 17.37 0.00 0.00 3.91
2573 2726 6.127111 TGTTGGAGTACTACTTGTGTAAACCA 60.127 38.462 6.66 0.00 0.00 3.67
2595 2748 3.662759 TGTTTCTTCCCTCCTTGTGTT 57.337 42.857 0.00 0.00 0.00 3.32
2621 2774 3.967326 TGCTATTTCTTCCAGCCTAGCTA 59.033 43.478 0.00 0.00 36.40 3.32
2622 2775 2.774234 TGCTATTTCTTCCAGCCTAGCT 59.226 45.455 0.00 0.00 40.77 3.32
2623 2776 3.199880 TGCTATTTCTTCCAGCCTAGC 57.800 47.619 0.00 0.00 34.31 3.42
2624 2777 3.879892 GGTTGCTATTTCTTCCAGCCTAG 59.120 47.826 0.00 0.00 34.31 3.02
2644 2797 5.885449 ATTCTGCTTTATCTAGCTCAGGT 57.115 39.130 0.00 0.00 41.76 4.00
2659 2817 6.253727 CGAGAGATTGTAACGTTTATTCTGCT 59.746 38.462 5.91 7.25 0.00 4.24
2683 2841 1.008538 GTTGTTTCACCTGGCTGCG 60.009 57.895 0.00 0.00 0.00 5.18
2793 2952 8.880750 CATATATGTTGATCAATCAGAGCGAAT 58.119 33.333 12.12 0.00 38.19 3.34
2809 2968 7.959109 CACTTGAATATCCGTGCATATATGTTG 59.041 37.037 14.14 4.62 0.00 3.33
2907 3067 3.193263 GTGGTGTGCATCTGATCTACAG 58.807 50.000 0.00 0.00 46.97 2.74
2908 3068 2.566724 TGTGGTGTGCATCTGATCTACA 59.433 45.455 0.00 0.00 0.00 2.74
2909 3069 2.932614 GTGTGGTGTGCATCTGATCTAC 59.067 50.000 0.00 0.00 0.00 2.59
2910 3070 2.093500 GGTGTGGTGTGCATCTGATCTA 60.093 50.000 0.00 0.00 0.00 1.98
2911 3071 1.339438 GGTGTGGTGTGCATCTGATCT 60.339 52.381 0.00 0.00 0.00 2.75
2924 3084 1.422977 TAGGGCATGTGTGGTGTGGT 61.423 55.000 0.00 0.00 0.00 4.16
2950 3110 2.159071 GCAAGTTGCCCATGAATATGCA 60.159 45.455 17.36 0.00 37.42 3.96
3015 3175 6.710597 TTGTATACTCGGATCTTGCTAGTT 57.289 37.500 4.17 0.00 0.00 2.24
3016 3176 6.682746 CATTGTATACTCGGATCTTGCTAGT 58.317 40.000 4.17 0.00 0.00 2.57
3017 3177 5.574830 GCATTGTATACTCGGATCTTGCTAG 59.425 44.000 4.17 0.00 0.00 3.42
3061 3223 8.508601 ACCGGACCCAGATTAGACATATATATA 58.491 37.037 9.46 0.00 0.00 0.86
3062 3224 7.363031 ACCGGACCCAGATTAGACATATATAT 58.637 38.462 9.46 0.00 0.00 0.86
3063 3225 6.738635 ACCGGACCCAGATTAGACATATATA 58.261 40.000 9.46 0.00 0.00 0.86
3064 3226 5.590818 ACCGGACCCAGATTAGACATATAT 58.409 41.667 9.46 0.00 0.00 0.86
3097 3259 0.588252 CCTCAGTTGAACTGTTGCCG 59.412 55.000 23.17 9.07 46.03 5.69
3148 3320 1.298859 GGAAGGCAATCGCGACAACT 61.299 55.000 12.93 4.58 39.92 3.16
3155 3327 1.869767 CATCTAGTGGAAGGCAATCGC 59.130 52.381 0.00 0.00 37.44 4.58
3157 3329 2.877168 CTGCATCTAGTGGAAGGCAATC 59.123 50.000 7.44 0.00 37.68 2.67
3158 3330 2.928334 CTGCATCTAGTGGAAGGCAAT 58.072 47.619 7.44 0.00 37.68 3.56
3162 3334 2.492012 GATGCTGCATCTAGTGGAAGG 58.508 52.381 30.12 0.00 37.82 3.46
3188 3360 8.068380 GCGATACCTATTTTGGAAGTAATTGTC 58.932 37.037 0.00 0.00 0.00 3.18
3241 3426 9.295825 ACCTTTGATTCATAATAAGTGTCACAA 57.704 29.630 5.62 0.00 0.00 3.33
3258 3443 9.582648 AACACCAATTTACTACTACCTTTGATT 57.417 29.630 0.00 0.00 0.00 2.57
3265 3450 8.611654 TCTCAAAACACCAATTTACTACTACC 57.388 34.615 0.00 0.00 0.00 3.18
3281 3466 8.314751 TCAAAGGGTGTAAAATTTCTCAAAACA 58.685 29.630 0.00 0.00 0.00 2.83
3299 3484 5.201243 GGTAATTAAGCCATCTCAAAGGGT 58.799 41.667 0.00 0.00 37.18 4.34
3348 3533 4.082245 CCACAGGGCAAGAAAACGATATTT 60.082 41.667 0.00 0.00 0.00 1.40
3366 3555 3.663176 CAGCACAACGGGCCACAG 61.663 66.667 4.39 0.00 0.00 3.66
3390 3580 0.889186 CCCATTATTCTTCCCGCCGG 60.889 60.000 0.00 0.00 0.00 6.13
3391 3581 0.107831 TCCCATTATTCTTCCCGCCG 59.892 55.000 0.00 0.00 0.00 6.46
3392 3582 1.897560 CTCCCATTATTCTTCCCGCC 58.102 55.000 0.00 0.00 0.00 6.13
3393 3583 1.202818 AGCTCCCATTATTCTTCCCGC 60.203 52.381 0.00 0.00 0.00 6.13
3409 3599 3.550437 ACCCTGTGTCATATCAAGCTC 57.450 47.619 0.00 0.00 0.00 4.09
3440 3633 1.511850 CACCATGCAAGAGTCGAACA 58.488 50.000 0.00 0.00 0.00 3.18
3451 3644 2.534011 TCCTTCCCCCACCATGCA 60.534 61.111 0.00 0.00 0.00 3.96
3452 3645 2.276740 CTCCTTCCCCCACCATGC 59.723 66.667 0.00 0.00 0.00 4.06
3453 3646 1.304282 CACTCCTTCCCCCACCATG 59.696 63.158 0.00 0.00 0.00 3.66
3454 3647 2.616458 GCACTCCTTCCCCCACCAT 61.616 63.158 0.00 0.00 0.00 3.55
3549 3742 2.737376 GGAGTGCGTCGACAACCC 60.737 66.667 17.16 12.00 0.00 4.11
3583 3776 3.603379 TCAATTCATTTCGTTATCGCGC 58.397 40.909 0.00 0.00 36.96 6.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.