Multiple sequence alignment - TraesCS6B01G370700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G370700 chr6B 100.000 2729 0 0 1 2729 644387679 644384951 0.000000e+00 5040.0
1 TraesCS6B01G370700 chr6B 92.716 659 36 6 19 666 56997719 56998376 0.000000e+00 941.0
2 TraesCS6B01G370700 chr6B 88.722 665 52 10 19 670 620899155 620898501 0.000000e+00 791.0
3 TraesCS6B01G370700 chr6B 83.812 661 85 10 27 672 56998368 56997715 2.890000e-170 608.0
4 TraesCS6B01G370700 chr6B 82.485 668 88 22 19 670 620898503 620899157 2.950000e-155 558.0
5 TraesCS6B01G370700 chr6B 82.576 660 77 17 19 658 644387012 644387653 6.390000e-152 547.0
6 TraesCS6B01G370700 chr6B 100.000 291 0 0 3097 3387 644384583 644384293 3.850000e-149 538.0
7 TraesCS6B01G370700 chr6B 74.761 1256 259 34 1032 2250 644756019 644757253 8.380000e-141 510.0
8 TraesCS6B01G370700 chr6B 74.320 1176 245 35 1083 2232 644846252 644847396 2.400000e-121 446.0
9 TraesCS6B01G370700 chr6B 77.292 709 145 12 1133 1829 644861476 644862180 1.460000e-108 403.0
10 TraesCS6B01G370700 chr6B 86.348 293 33 7 2430 2721 454503199 454502913 2.540000e-81 313.0
11 TraesCS6B01G370700 chr6B 78.295 129 21 6 1973 2094 644772316 644772444 3.620000e-10 76.8
12 TraesCS6B01G370700 chr6D 90.786 1769 98 36 673 2435 428421698 428419989 0.000000e+00 2303.0
13 TraesCS6B01G370700 chr6D 73.794 912 205 27 1353 2250 428540278 428541169 2.520000e-86 329.0
14 TraesCS6B01G370700 chr6D 86.538 208 25 2 1133 1337 428504837 428505044 3.400000e-55 226.0
15 TraesCS6B01G370700 chr6D 91.156 147 13 0 3112 3258 428420013 428419867 2.060000e-47 200.0
16 TraesCS6B01G370700 chr6D 85.315 143 18 2 1133 1272 428550906 428551048 9.800000e-31 145.0
17 TraesCS6B01G370700 chr6D 88.172 93 7 1 3289 3377 428419864 428419772 1.290000e-19 108.0
18 TraesCS6B01G370700 chr6A 94.069 1450 73 9 988 2435 573036757 573035319 0.000000e+00 2189.0
19 TraesCS6B01G370700 chr6A 77.280 625 103 17 1133 1733 573256436 573257045 7.010000e-87 331.0
20 TraesCS6B01G370700 chr6A 75.912 685 122 29 1085 1747 573253452 573254115 9.130000e-81 311.0
21 TraesCS6B01G370700 chr6A 84.868 304 43 3 2428 2729 453814598 453814296 1.530000e-78 303.0
22 TraesCS6B01G370700 chr6A 72.292 1191 241 58 1074 2234 573129207 573130338 4.280000e-74 289.0
23 TraesCS6B01G370700 chr6A 83.133 249 17 12 673 918 573037026 573036800 1.590000e-48 204.0
24 TraesCS6B01G370700 chr3B 88.623 668 51 10 19 671 563389852 563389195 0.000000e+00 789.0
25 TraesCS6B01G370700 chr3B 81.967 671 90 21 19 671 563389198 563389855 1.070000e-149 540.0
26 TraesCS6B01G370700 chr7B 88.042 669 55 11 15 667 348415707 348416366 0.000000e+00 769.0
27 TraesCS6B01G370700 chr7B 81.009 674 97 18 16 670 348416369 348415708 1.080000e-139 507.0
28 TraesCS6B01G370700 chr4A 86.154 650 82 6 27 670 560916113 560916760 0.000000e+00 695.0
29 TraesCS6B01G370700 chr4A 82.290 655 86 15 27 664 560916748 560916107 1.070000e-149 540.0
30 TraesCS6B01G370700 chr4A 85.050 301 43 2 2428 2727 596626687 596626986 4.250000e-79 305.0
31 TraesCS6B01G370700 chr7A 83.597 695 84 15 3 672 646678378 646679067 2.870000e-175 625.0
32 TraesCS6B01G370700 chr7A 86.047 301 38 4 2422 2721 247210470 247210767 1.520000e-83 320.0
33 TraesCS6B01G370700 chr2A 86.774 310 30 4 2427 2726 251777569 251777877 5.420000e-88 335.0
34 TraesCS6B01G370700 chr2A 87.413 286 33 2 2422 2706 13401725 13402008 3.260000e-85 326.0
35 TraesCS6B01G370700 chr2A 84.641 306 44 3 2422 2726 388250507 388250810 5.490000e-78 302.0
36 TraesCS6B01G370700 chr4B 85.050 301 42 3 2428 2727 299557345 299557047 1.530000e-78 303.0
37 TraesCS6B01G370700 chr1A 84.718 301 44 2 2428 2727 449955081 449954782 1.980000e-77 300.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G370700 chr6B 644384293 644387679 3386 True 2789.000000 5040 100.000 1 3387 2 chr6B.!!$R4 3386
1 TraesCS6B01G370700 chr6B 56997719 56998376 657 False 941.000000 941 92.716 19 666 1 chr6B.!!$F1 647
2 TraesCS6B01G370700 chr6B 620898501 620899155 654 True 791.000000 791 88.722 19 670 1 chr6B.!!$R3 651
3 TraesCS6B01G370700 chr6B 56997715 56998368 653 True 608.000000 608 83.812 27 672 1 chr6B.!!$R1 645
4 TraesCS6B01G370700 chr6B 620898503 620899157 654 False 558.000000 558 82.485 19 670 1 chr6B.!!$F2 651
5 TraesCS6B01G370700 chr6B 644387012 644387653 641 False 547.000000 547 82.576 19 658 1 chr6B.!!$F3 639
6 TraesCS6B01G370700 chr6B 644756019 644757253 1234 False 510.000000 510 74.761 1032 2250 1 chr6B.!!$F4 1218
7 TraesCS6B01G370700 chr6B 644846252 644847396 1144 False 446.000000 446 74.320 1083 2232 1 chr6B.!!$F6 1149
8 TraesCS6B01G370700 chr6B 644861476 644862180 704 False 403.000000 403 77.292 1133 1829 1 chr6B.!!$F7 696
9 TraesCS6B01G370700 chr6D 428419772 428421698 1926 True 870.333333 2303 90.038 673 3377 3 chr6D.!!$R1 2704
10 TraesCS6B01G370700 chr6D 428540278 428541169 891 False 329.000000 329 73.794 1353 2250 1 chr6D.!!$F2 897
11 TraesCS6B01G370700 chr6A 573035319 573037026 1707 True 1196.500000 2189 88.601 673 2435 2 chr6A.!!$R2 1762
12 TraesCS6B01G370700 chr6A 573253452 573257045 3593 False 321.000000 331 76.596 1085 1747 2 chr6A.!!$F2 662
13 TraesCS6B01G370700 chr6A 573129207 573130338 1131 False 289.000000 289 72.292 1074 2234 1 chr6A.!!$F1 1160
14 TraesCS6B01G370700 chr3B 563389195 563389852 657 True 789.000000 789 88.623 19 671 1 chr3B.!!$R1 652
15 TraesCS6B01G370700 chr3B 563389198 563389855 657 False 540.000000 540 81.967 19 671 1 chr3B.!!$F1 652
16 TraesCS6B01G370700 chr7B 348415707 348416366 659 False 769.000000 769 88.042 15 667 1 chr7B.!!$F1 652
17 TraesCS6B01G370700 chr7B 348415708 348416369 661 True 507.000000 507 81.009 16 670 1 chr7B.!!$R1 654
18 TraesCS6B01G370700 chr4A 560916113 560916760 647 False 695.000000 695 86.154 27 670 1 chr4A.!!$F1 643
19 TraesCS6B01G370700 chr4A 560916107 560916748 641 True 540.000000 540 82.290 27 664 1 chr4A.!!$R1 637
20 TraesCS6B01G370700 chr7A 646678378 646679067 689 False 625.000000 625 83.597 3 672 1 chr7A.!!$F2 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
727 760 0.179012 TTCCCAACTTCCGTTCCCAC 60.179 55.0 0.0 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2440 5464 0.107897 TAACGTATGCTGCACCCTGG 60.108 55.0 3.57 0.0 0.0 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 64 3.056179 CCCAACGGAATTGCCATAAAAGT 60.056 43.478 0.00 0.00 36.93 2.66
244 247 2.244117 CTGCCGCCTCACATAGTGGT 62.244 60.000 0.00 0.00 33.87 4.16
346 353 3.857157 TTGCACCCTCTTAGAACACTT 57.143 42.857 0.00 0.00 0.00 3.16
366 374 4.202284 ACTTGATTGTCTTTGCTGCCAAAT 60.202 37.500 0.00 0.00 39.98 2.32
433 465 5.151297 TCTTCACTCATGCATGAACAGTA 57.849 39.130 28.39 14.23 36.18 2.74
701 734 2.534298 CAACATGCTGGTCGTCTCTAG 58.466 52.381 0.00 0.00 0.00 2.43
722 755 2.817844 GCATTACTTCCCAACTTCCGTT 59.182 45.455 0.00 0.00 0.00 4.44
723 756 3.119955 GCATTACTTCCCAACTTCCGTTC 60.120 47.826 0.00 0.00 0.00 3.95
724 757 2.845363 TACTTCCCAACTTCCGTTCC 57.155 50.000 0.00 0.00 0.00 3.62
727 760 0.179012 TTCCCAACTTCCGTTCCCAC 60.179 55.000 0.00 0.00 0.00 4.61
729 762 1.170290 CCCAACTTCCGTTCCCACAC 61.170 60.000 0.00 0.00 0.00 3.82
730 763 1.170290 CCAACTTCCGTTCCCACACC 61.170 60.000 0.00 0.00 0.00 4.16
731 764 0.464735 CAACTTCCGTTCCCACACCA 60.465 55.000 0.00 0.00 0.00 4.17
732 765 0.476771 AACTTCCGTTCCCACACCAT 59.523 50.000 0.00 0.00 0.00 3.55
733 766 1.354101 ACTTCCGTTCCCACACCATA 58.646 50.000 0.00 0.00 0.00 2.74
734 767 1.913419 ACTTCCGTTCCCACACCATAT 59.087 47.619 0.00 0.00 0.00 1.78
735 768 2.307686 ACTTCCGTTCCCACACCATATT 59.692 45.455 0.00 0.00 0.00 1.28
736 769 2.702592 TCCGTTCCCACACCATATTC 57.297 50.000 0.00 0.00 0.00 1.75
737 770 2.193127 TCCGTTCCCACACCATATTCT 58.807 47.619 0.00 0.00 0.00 2.40
738 771 2.169769 TCCGTTCCCACACCATATTCTC 59.830 50.000 0.00 0.00 0.00 2.87
739 772 2.201732 CGTTCCCACACCATATTCTCG 58.798 52.381 0.00 0.00 0.00 4.04
740 773 2.159156 CGTTCCCACACCATATTCTCGA 60.159 50.000 0.00 0.00 0.00 4.04
741 774 3.458189 GTTCCCACACCATATTCTCGAG 58.542 50.000 5.93 5.93 0.00 4.04
742 775 3.026707 TCCCACACCATATTCTCGAGA 57.973 47.619 12.08 12.08 0.00 4.04
743 776 3.371034 TCCCACACCATATTCTCGAGAA 58.629 45.455 28.85 28.85 38.56 2.87
744 777 3.132289 TCCCACACCATATTCTCGAGAAC 59.868 47.826 29.24 0.00 36.80 3.01
745 778 3.116300 CCACACCATATTCTCGAGAACG 58.884 50.000 29.24 19.46 36.80 3.95
746 779 2.535984 CACACCATATTCTCGAGAACGC 59.464 50.000 29.24 0.00 36.80 4.84
747 780 2.165641 ACACCATATTCTCGAGAACGCA 59.834 45.455 29.24 17.55 36.80 5.24
753 786 2.264109 TTCTCGAGAACGCATGAGTC 57.736 50.000 23.74 0.00 39.58 3.36
759 792 1.996191 GAGAACGCATGAGTCCAACTC 59.004 52.381 1.45 6.45 45.26 3.01
807 840 3.431572 GGACTCTTATCGCATGCAGATTC 59.568 47.826 23.35 17.73 0.00 2.52
808 841 4.305769 GACTCTTATCGCATGCAGATTCT 58.694 43.478 23.35 9.00 0.00 2.40
825 858 7.041098 TGCAGATTCTTGAGTCTCCTTTTAAAC 60.041 37.037 0.00 0.00 0.00 2.01
874 907 9.701355 CTCAAATTAAAGAAACAAAAACGCAAT 57.299 25.926 0.00 0.00 0.00 3.56
886 919 0.610785 AACGCAATTGTACCAGGGGG 60.611 55.000 7.40 0.00 41.29 5.40
903 936 0.811616 GGGCGTGGCTCAAGATGTAG 60.812 60.000 0.00 0.00 0.00 2.74
908 941 2.797156 CGTGGCTCAAGATGTAGCATAC 59.203 50.000 0.00 0.00 43.42 2.39
909 942 2.797156 GTGGCTCAAGATGTAGCATACG 59.203 50.000 0.00 0.00 46.99 3.06
910 943 2.430694 TGGCTCAAGATGTAGCATACGT 59.569 45.455 0.00 0.00 46.99 3.57
911 944 3.634910 TGGCTCAAGATGTAGCATACGTA 59.365 43.478 0.00 0.00 46.99 3.57
977 1010 7.873739 ATATCCTCAAAAACGAAGCAAAAAG 57.126 32.000 0.00 0.00 0.00 2.27
980 1013 5.347364 TCCTCAAAAACGAAGCAAAAAGTTG 59.653 36.000 0.00 0.00 37.83 3.16
1001 1037 1.067776 CCGTGGTAGATTAGATCCGCC 60.068 57.143 0.00 0.00 0.00 6.13
1013 1049 6.443849 AGATTAGATCCGCCATAAATAAGGGA 59.556 38.462 0.00 0.00 0.00 4.20
1030 1066 1.410365 GGGATTCTCGAGTCTCCCTCA 60.410 57.143 31.15 5.20 43.45 3.86
1033 1069 2.588464 TTCTCGAGTCTCCCTCACTT 57.412 50.000 13.13 0.00 40.48 3.16
1034 1070 3.715638 TTCTCGAGTCTCCCTCACTTA 57.284 47.619 13.13 0.00 40.48 2.24
1035 1071 3.935818 TCTCGAGTCTCCCTCACTTAT 57.064 47.619 13.13 0.00 40.48 1.73
1037 1073 2.546368 CTCGAGTCTCCCTCACTTATCG 59.454 54.545 3.62 0.00 40.48 2.92
1039 1075 2.943690 CGAGTCTCCCTCACTTATCGAA 59.056 50.000 0.00 0.00 40.48 3.71
1040 1076 3.002862 CGAGTCTCCCTCACTTATCGAAG 59.997 52.174 0.00 0.00 40.48 3.79
1041 1077 2.691011 AGTCTCCCTCACTTATCGAAGC 59.309 50.000 0.00 0.00 35.97 3.86
1198 4183 2.571757 CTTGTCGCCGAGCACCTA 59.428 61.111 0.00 0.00 0.00 3.08
1444 4444 2.095415 CGAGTATGTTCTCACGACCACA 60.095 50.000 0.00 0.00 34.46 4.17
1624 4637 2.287547 GGTTGTGCTTCATTTTCGCTCA 60.288 45.455 0.00 0.00 0.00 4.26
1753 4766 3.057734 GTCAAAGAACATCTCGTCGGTT 58.942 45.455 0.00 0.00 0.00 4.44
1762 4775 2.342910 TCTCGTCGGTTCAAACTAGC 57.657 50.000 0.00 0.00 0.00 3.42
1763 4776 1.884579 TCTCGTCGGTTCAAACTAGCT 59.115 47.619 0.00 0.00 0.00 3.32
1764 4777 2.095364 TCTCGTCGGTTCAAACTAGCTC 60.095 50.000 0.00 0.00 0.00 4.09
1765 4778 1.610038 TCGTCGGTTCAAACTAGCTCA 59.390 47.619 0.00 0.00 0.00 4.26
1833 4846 0.470456 TGGACTACACACGGGGTTCT 60.470 55.000 0.00 0.00 0.00 3.01
1904 4917 2.425143 TCCTGATGGAGAACAATGGC 57.575 50.000 0.00 0.00 37.46 4.40
1938 4951 2.035321 TGTCATCGTGCTCACAGTTGTA 59.965 45.455 0.69 0.00 0.00 2.41
2252 5274 7.594351 TGTCTCTCATTCTTATAGTGAGCAT 57.406 36.000 0.00 0.00 39.30 3.79
2259 5281 8.470657 TCATTCTTATAGTGAGCATGTCTAGT 57.529 34.615 0.00 0.00 0.00 2.57
2290 5313 7.252708 TCATGCTTTGCTATATGTTTGAGTTG 58.747 34.615 0.00 0.00 0.00 3.16
2353 5377 6.183360 GGGTTGTGGTAGATTTTATCCCATTG 60.183 42.308 0.00 0.00 0.00 2.82
2444 5468 8.423906 AGTAGTAATACTATTCATCACCCAGG 57.576 38.462 0.00 0.00 32.65 4.45
2445 5469 6.688073 AGTAATACTATTCATCACCCAGGG 57.312 41.667 2.85 2.85 0.00 4.45
2446 5470 6.151049 AGTAATACTATTCATCACCCAGGGT 58.849 40.000 4.76 4.76 35.62 4.34
2455 5479 2.677228 ACCCAGGGTGCAGCATAC 59.323 61.111 19.06 0.00 32.98 2.39
2456 5480 2.514592 CCCAGGGTGCAGCATACG 60.515 66.667 19.06 4.01 0.00 3.06
2457 5481 2.268920 CCAGGGTGCAGCATACGT 59.731 61.111 19.06 0.00 0.00 3.57
2458 5482 1.377202 CCAGGGTGCAGCATACGTT 60.377 57.895 19.06 0.00 0.00 3.99
2459 5483 0.107897 CCAGGGTGCAGCATACGTTA 60.108 55.000 19.06 0.00 0.00 3.18
2460 5484 1.475034 CCAGGGTGCAGCATACGTTAT 60.475 52.381 19.06 0.00 0.00 1.89
2461 5485 2.288666 CAGGGTGCAGCATACGTTATT 58.711 47.619 19.06 0.00 0.00 1.40
2462 5486 2.287915 CAGGGTGCAGCATACGTTATTC 59.712 50.000 19.06 0.00 0.00 1.75
2463 5487 2.170607 AGGGTGCAGCATACGTTATTCT 59.829 45.455 19.06 0.00 0.00 2.40
2464 5488 2.943033 GGGTGCAGCATACGTTATTCTT 59.057 45.455 19.06 0.00 0.00 2.52
2465 5489 3.002348 GGGTGCAGCATACGTTATTCTTC 59.998 47.826 19.06 0.00 0.00 2.87
2466 5490 3.621268 GGTGCAGCATACGTTATTCTTCA 59.379 43.478 11.86 0.00 0.00 3.02
2467 5491 4.494199 GGTGCAGCATACGTTATTCTTCAC 60.494 45.833 11.86 0.00 28.52 3.18
2468 5492 3.621268 TGCAGCATACGTTATTCTTCACC 59.379 43.478 0.00 0.00 0.00 4.02
2469 5493 3.002348 GCAGCATACGTTATTCTTCACCC 59.998 47.826 0.00 0.00 0.00 4.61
2470 5494 3.245284 CAGCATACGTTATTCTTCACCCG 59.755 47.826 0.00 0.00 0.00 5.28
2471 5495 3.131577 AGCATACGTTATTCTTCACCCGA 59.868 43.478 0.00 0.00 0.00 5.14
2472 5496 3.489785 GCATACGTTATTCTTCACCCGAG 59.510 47.826 0.00 0.00 0.00 4.63
2473 5497 2.667473 ACGTTATTCTTCACCCGAGG 57.333 50.000 0.00 0.00 0.00 4.63
2474 5498 1.897802 ACGTTATTCTTCACCCGAGGT 59.102 47.619 0.00 0.00 35.62 3.85
2475 5499 3.091545 ACGTTATTCTTCACCCGAGGTA 58.908 45.455 0.00 0.00 32.11 3.08
2476 5500 3.511146 ACGTTATTCTTCACCCGAGGTAA 59.489 43.478 0.00 0.00 32.11 2.85
2477 5501 4.161001 ACGTTATTCTTCACCCGAGGTAAT 59.839 41.667 0.00 0.00 32.11 1.89
2478 5502 4.743644 CGTTATTCTTCACCCGAGGTAATC 59.256 45.833 0.00 0.00 32.11 1.75
2479 5503 5.451520 CGTTATTCTTCACCCGAGGTAATCT 60.452 44.000 0.00 0.00 32.11 2.40
2480 5504 6.346896 GTTATTCTTCACCCGAGGTAATCTT 58.653 40.000 0.00 0.00 32.11 2.40
2481 5505 7.495055 GTTATTCTTCACCCGAGGTAATCTTA 58.505 38.462 0.00 0.00 32.11 2.10
2482 5506 4.996788 TCTTCACCCGAGGTAATCTTAC 57.003 45.455 0.00 0.00 32.11 2.34
2483 5507 3.379372 TCTTCACCCGAGGTAATCTTACG 59.621 47.826 0.00 0.00 32.11 3.18
2484 5508 3.003394 TCACCCGAGGTAATCTTACGA 57.997 47.619 0.00 0.00 32.11 3.43
2485 5509 3.559069 TCACCCGAGGTAATCTTACGAT 58.441 45.455 0.00 0.00 32.11 3.73
2486 5510 3.567164 TCACCCGAGGTAATCTTACGATC 59.433 47.826 0.00 0.00 32.11 3.69
2487 5511 2.551459 ACCCGAGGTAATCTTACGATCG 59.449 50.000 14.88 14.88 40.33 3.69
2488 5512 2.551459 CCCGAGGTAATCTTACGATCGT 59.449 50.000 25.94 25.94 39.66 3.73
2489 5513 3.004106 CCCGAGGTAATCTTACGATCGTT 59.996 47.826 27.88 10.55 39.66 3.85
2490 5514 4.498682 CCCGAGGTAATCTTACGATCGTTT 60.499 45.833 27.88 16.67 39.66 3.60
2491 5515 4.674211 CCGAGGTAATCTTACGATCGTTTC 59.326 45.833 27.88 5.50 39.66 2.78
2492 5516 5.268544 CGAGGTAATCTTACGATCGTTTCA 58.731 41.667 27.88 10.57 38.06 2.69
2493 5517 5.913514 CGAGGTAATCTTACGATCGTTTCAT 59.086 40.000 27.88 12.47 38.06 2.57
2494 5518 7.073883 CGAGGTAATCTTACGATCGTTTCATA 58.926 38.462 27.88 4.54 38.06 2.15
2495 5519 7.749570 CGAGGTAATCTTACGATCGTTTCATAT 59.250 37.037 27.88 11.23 38.06 1.78
2526 5550 9.900710 ATTGCATTTCGTATACAAAAAGTTACA 57.099 25.926 3.32 0.00 0.00 2.41
2527 5551 9.900710 TTGCATTTCGTATACAAAAAGTTACAT 57.099 25.926 3.32 0.00 0.00 2.29
2528 5552 9.900710 TGCATTTCGTATACAAAAAGTTACATT 57.099 25.926 3.32 0.00 0.00 2.71
2702 5726 9.993454 ACTTTCTTAAGTTCTCCTTTTACGTAT 57.007 29.630 1.63 0.00 41.85 3.06
2704 5728 9.985730 TTTCTTAAGTTCTCCTTTTACGTATGA 57.014 29.630 1.63 0.00 34.46 2.15
2705 5729 9.985730 TTCTTAAGTTCTCCTTTTACGTATGAA 57.014 29.630 1.63 0.00 34.46 2.57
2706 5730 9.635520 TCTTAAGTTCTCCTTTTACGTATGAAG 57.364 33.333 1.63 4.26 34.46 3.02
2707 5731 9.420551 CTTAAGTTCTCCTTTTACGTATGAAGT 57.579 33.333 14.46 6.19 34.46 3.01
2710 5734 8.983307 AGTTCTCCTTTTACGTATGAAGTAAG 57.017 34.615 14.46 11.98 35.75 2.34
2711 5735 8.800332 AGTTCTCCTTTTACGTATGAAGTAAGA 58.200 33.333 14.46 13.39 35.75 2.10
2712 5736 8.858186 GTTCTCCTTTTACGTATGAAGTAAGAC 58.142 37.037 14.46 7.38 35.75 3.01
2713 5737 8.345724 TCTCCTTTTACGTATGAAGTAAGACT 57.654 34.615 14.46 0.00 35.75 3.24
2714 5738 9.453572 TCTCCTTTTACGTATGAAGTAAGACTA 57.546 33.333 14.46 0.30 35.75 2.59
2715 5739 9.719279 CTCCTTTTACGTATGAAGTAAGACTAG 57.281 37.037 14.46 0.00 35.75 2.57
2716 5740 9.453572 TCCTTTTACGTATGAAGTAAGACTAGA 57.546 33.333 14.46 3.89 35.75 2.43
3114 6138 3.217242 ATGATGAATAGCGCGACCC 57.783 52.632 12.10 0.00 0.00 4.46
3115 6139 0.681733 ATGATGAATAGCGCGACCCT 59.318 50.000 12.10 0.00 0.00 4.34
3116 6140 0.464036 TGATGAATAGCGCGACCCTT 59.536 50.000 12.10 0.00 0.00 3.95
3117 6141 1.134521 TGATGAATAGCGCGACCCTTT 60.135 47.619 12.10 0.00 0.00 3.11
3118 6142 2.101750 TGATGAATAGCGCGACCCTTTA 59.898 45.455 12.10 0.00 0.00 1.85
3119 6143 2.676632 TGAATAGCGCGACCCTTTAA 57.323 45.000 12.10 0.00 0.00 1.52
3120 6144 2.975266 TGAATAGCGCGACCCTTTAAA 58.025 42.857 12.10 0.00 0.00 1.52
3121 6145 3.336468 TGAATAGCGCGACCCTTTAAAA 58.664 40.909 12.10 0.00 0.00 1.52
3122 6146 3.752222 TGAATAGCGCGACCCTTTAAAAA 59.248 39.130 12.10 0.00 0.00 1.94
3183 6207 2.309528 TACTTGGCAATGGCGTAGAG 57.690 50.000 13.91 6.72 42.47 2.43
3191 6215 2.750712 GCAATGGCGTAGAGGGTTTTTA 59.249 45.455 0.00 0.00 0.00 1.52
3198 6222 3.558829 GCGTAGAGGGTTTTTATAGCCAC 59.441 47.826 0.00 0.00 38.16 5.01
3199 6223 4.124970 CGTAGAGGGTTTTTATAGCCACC 58.875 47.826 0.00 0.00 38.16 4.61
3212 6236 7.926674 TTTATAGCCACCTGGTTTTACTAAC 57.073 36.000 0.00 0.00 37.57 2.34
3229 6253 2.247311 AACGATTGCAAAAGCTAGCG 57.753 45.000 9.55 7.87 0.00 4.26
3232 6256 0.171007 GATTGCAAAAGCTAGCGGCA 59.829 50.000 18.07 18.07 44.79 5.69
3235 6259 1.875364 GCAAAAGCTAGCGGCATGC 60.875 57.895 9.90 9.90 44.79 4.06
3318 6342 4.508971 CGTTTGAACATTAGATAGCGCAG 58.491 43.478 11.47 0.00 0.00 5.18
3328 6352 3.533606 AGATAGCGCAGTGACATTCTT 57.466 42.857 11.47 0.00 0.00 2.52
3330 6354 5.011090 AGATAGCGCAGTGACATTCTTTA 57.989 39.130 11.47 0.00 0.00 1.85
3333 6357 3.664107 AGCGCAGTGACATTCTTTAGAA 58.336 40.909 11.47 0.00 38.56 2.10
3335 6359 4.331168 AGCGCAGTGACATTCTTTAGAATC 59.669 41.667 11.47 0.00 42.41 2.52
3342 6366 7.118390 CAGTGACATTCTTTAGAATCCTTTCGT 59.882 37.037 2.04 0.00 42.41 3.85
3377 6405 7.994425 ACTGATCTCTCGAATGTATACTCAT 57.006 36.000 4.17 0.00 0.00 2.90
3378 6406 7.815641 ACTGATCTCTCGAATGTATACTCATG 58.184 38.462 4.17 0.00 0.00 3.07
3379 6407 7.094420 ACTGATCTCTCGAATGTATACTCATGG 60.094 40.741 4.17 0.00 0.00 3.66
3380 6408 5.378292 TCTCTCGAATGTATACTCATGGC 57.622 43.478 4.17 0.00 0.00 4.40
3381 6409 4.827284 TCTCTCGAATGTATACTCATGGCA 59.173 41.667 4.17 0.00 0.00 4.92
3382 6410 5.301805 TCTCTCGAATGTATACTCATGGCAA 59.698 40.000 4.17 0.00 0.00 4.52
3383 6411 5.289595 TCTCGAATGTATACTCATGGCAAC 58.710 41.667 4.17 0.00 0.00 4.17
3384 6412 5.069119 TCTCGAATGTATACTCATGGCAACT 59.931 40.000 4.17 0.00 37.61 3.16
3385 6413 5.670485 TCGAATGTATACTCATGGCAACTT 58.330 37.500 4.17 0.00 37.61 2.66
3386 6414 6.811954 TCGAATGTATACTCATGGCAACTTA 58.188 36.000 4.17 0.00 37.61 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 247 3.279116 GCGTGAACTGTGCTGCCA 61.279 61.111 0.00 0.00 0.00 4.92
253 256 2.027024 TTCACTCGCGCGTGAACT 59.973 55.556 33.69 13.06 45.92 3.01
346 353 5.465532 TTATTTGGCAGCAAAGACAATCA 57.534 34.783 0.00 0.00 36.19 2.57
412 433 6.255950 CAATACTGTTCATGCATGAGTGAAG 58.744 40.000 27.25 22.85 38.19 3.02
433 465 0.464373 CCTCATGTAGTGGCGGCAAT 60.464 55.000 18.05 18.05 0.00 3.56
672 705 0.031857 CCAGCATGTTGCCGTCAAAA 59.968 50.000 3.65 0.00 46.52 2.44
673 706 1.106351 ACCAGCATGTTGCCGTCAAA 61.106 50.000 3.65 0.00 46.52 2.69
674 707 1.514678 GACCAGCATGTTGCCGTCAA 61.515 55.000 3.65 0.00 46.52 3.18
675 708 1.965930 GACCAGCATGTTGCCGTCA 60.966 57.895 3.65 0.00 46.52 4.35
676 709 2.870372 GACCAGCATGTTGCCGTC 59.130 61.111 3.65 3.77 46.52 4.79
677 710 3.049674 CGACCAGCATGTTGCCGT 61.050 61.111 3.65 0.00 46.52 5.68
678 711 3.027170 GACGACCAGCATGTTGCCG 62.027 63.158 16.53 16.53 46.52 5.69
701 734 2.433436 ACGGAAGTTGGGAAGTAATGC 58.567 47.619 0.00 0.00 46.40 3.56
722 755 3.026707 TCTCGAGAATATGGTGTGGGA 57.973 47.619 14.01 0.00 0.00 4.37
723 756 3.458189 GTTCTCGAGAATATGGTGTGGG 58.542 50.000 29.29 0.00 36.33 4.61
724 757 3.116300 CGTTCTCGAGAATATGGTGTGG 58.884 50.000 29.29 8.08 39.71 4.17
727 760 2.809446 TGCGTTCTCGAGAATATGGTG 58.191 47.619 29.29 15.90 39.71 4.17
729 762 3.642705 TCATGCGTTCTCGAGAATATGG 58.357 45.455 29.29 19.13 39.71 2.74
730 763 4.294232 ACTCATGCGTTCTCGAGAATATG 58.706 43.478 29.29 27.86 39.71 1.78
731 764 4.541779 GACTCATGCGTTCTCGAGAATAT 58.458 43.478 29.29 20.19 39.71 1.28
732 765 3.243101 GGACTCATGCGTTCTCGAGAATA 60.243 47.826 29.29 18.97 39.71 1.75
733 766 2.480416 GGACTCATGCGTTCTCGAGAAT 60.480 50.000 29.29 12.00 39.71 2.40
734 767 1.135373 GGACTCATGCGTTCTCGAGAA 60.135 52.381 23.74 23.74 39.71 2.87
735 768 0.452184 GGACTCATGCGTTCTCGAGA 59.548 55.000 12.08 12.08 39.71 4.04
736 769 0.171231 TGGACTCATGCGTTCTCGAG 59.829 55.000 5.93 5.93 39.71 4.04
737 770 0.601057 TTGGACTCATGCGTTCTCGA 59.399 50.000 0.00 0.00 39.71 4.04
738 771 0.716108 GTTGGACTCATGCGTTCTCG 59.284 55.000 0.00 0.00 40.37 4.04
739 772 1.996191 GAGTTGGACTCATGCGTTCTC 59.004 52.381 3.33 0.00 44.45 2.87
740 773 2.086054 GAGTTGGACTCATGCGTTCT 57.914 50.000 3.33 0.00 44.45 3.01
772 805 6.734871 GCGATAAGAGTCCCTTTGTTTTTGTT 60.735 38.462 0.00 0.00 36.34 2.83
773 806 5.278315 GCGATAAGAGTCCCTTTGTTTTTGT 60.278 40.000 0.00 0.00 36.34 2.83
774 807 5.154222 GCGATAAGAGTCCCTTTGTTTTTG 58.846 41.667 0.00 0.00 36.34 2.44
807 840 8.888579 TCTACAAGTTTAAAAGGAGACTCAAG 57.111 34.615 4.53 0.00 42.68 3.02
825 858 8.747471 TGAGGATATCTTGCATCTATCTACAAG 58.253 37.037 2.05 0.00 40.66 3.16
854 887 8.381387 GGTACAATTGCGTTTTTGTTTCTTTAA 58.619 29.630 5.05 0.00 37.29 1.52
855 888 7.544566 TGGTACAATTGCGTTTTTGTTTCTTTA 59.455 29.630 5.05 0.00 37.29 1.85
856 889 6.369065 TGGTACAATTGCGTTTTTGTTTCTTT 59.631 30.769 5.05 0.00 37.29 2.52
857 890 5.869888 TGGTACAATTGCGTTTTTGTTTCTT 59.130 32.000 5.05 0.00 37.29 2.52
858 891 5.411781 TGGTACAATTGCGTTTTTGTTTCT 58.588 33.333 5.05 0.00 37.29 2.52
874 907 3.642503 CCACGCCCCCTGGTACAA 61.643 66.667 0.00 0.00 38.70 2.41
886 919 0.740868 TGCTACATCTTGAGCCACGC 60.741 55.000 0.00 0.00 37.94 5.34
951 984 9.573133 CTTTTTGCTTCGTTTTTGAGGATATAT 57.427 29.630 0.00 0.00 0.00 0.86
952 985 8.573035 ACTTTTTGCTTCGTTTTTGAGGATATA 58.427 29.630 0.00 0.00 0.00 0.86
953 986 7.433680 ACTTTTTGCTTCGTTTTTGAGGATAT 58.566 30.769 0.00 0.00 0.00 1.63
954 987 6.801575 ACTTTTTGCTTCGTTTTTGAGGATA 58.198 32.000 0.00 0.00 0.00 2.59
955 988 5.660460 ACTTTTTGCTTCGTTTTTGAGGAT 58.340 33.333 0.00 0.00 0.00 3.24
956 989 5.066968 ACTTTTTGCTTCGTTTTTGAGGA 57.933 34.783 0.00 0.00 0.00 3.71
957 990 5.550070 CAACTTTTTGCTTCGTTTTTGAGG 58.450 37.500 0.00 0.00 0.00 3.86
976 1009 3.069729 GGATCTAATCTACCACGGCAACT 59.930 47.826 0.00 0.00 0.00 3.16
977 1010 3.391049 GGATCTAATCTACCACGGCAAC 58.609 50.000 0.00 0.00 0.00 4.17
980 1013 1.669211 GCGGATCTAATCTACCACGGC 60.669 57.143 0.00 0.00 0.00 5.68
987 1020 7.622081 TCCCTTATTTATGGCGGATCTAATCTA 59.378 37.037 0.00 0.00 0.00 1.98
1001 1037 7.093992 GGAGACTCGAGAATCCCTTATTTATG 58.906 42.308 21.68 0.00 0.00 1.90
1037 1073 5.797934 CGGAGTATAGATCGATGAAAGCTTC 59.202 44.000 0.54 0.00 0.00 3.86
1039 1075 5.004448 TCGGAGTATAGATCGATGAAAGCT 58.996 41.667 0.54 0.00 0.00 3.74
1040 1076 5.090083 GTCGGAGTATAGATCGATGAAAGC 58.910 45.833 0.54 0.00 34.13 3.51
1041 1077 5.120363 TCGTCGGAGTATAGATCGATGAAAG 59.880 44.000 0.54 0.00 42.31 2.62
1056 1092 1.595357 GTTGGGGAATCGTCGGAGT 59.405 57.895 0.00 0.00 0.00 3.85
1145 4130 2.266055 CAGGTTCGCCCAGTCCTC 59.734 66.667 0.00 0.00 38.27 3.71
1146 4131 3.322466 CCAGGTTCGCCCAGTCCT 61.322 66.667 0.00 0.00 38.27 3.85
1183 4168 2.675423 AGTAGGTGCTCGGCGACA 60.675 61.111 4.99 6.80 0.00 4.35
1321 4306 3.826157 TGTCGAATTCTTTTGGGAGCATT 59.174 39.130 3.52 0.00 0.00 3.56
1444 4444 4.782156 AGTTGAAGAATGAGACCCTCAGAT 59.218 41.667 2.99 0.00 44.08 2.90
1510 4514 4.697756 CTTGGAAGCCCGGCGACA 62.698 66.667 9.30 1.49 34.29 4.35
1753 4766 1.144969 CGCGGTTTGAGCTAGTTTGA 58.855 50.000 0.00 0.00 0.00 2.69
1762 4775 1.952133 TTCGGTGTCGCGGTTTGAG 60.952 57.895 6.13 0.00 36.13 3.02
1763 4776 2.106534 TTCGGTGTCGCGGTTTGA 59.893 55.556 6.13 0.00 36.13 2.69
1764 4777 2.247267 GTTCGGTGTCGCGGTTTG 59.753 61.111 6.13 0.00 36.13 2.93
1765 4778 2.968697 GGTTCGGTGTCGCGGTTT 60.969 61.111 6.13 0.00 36.13 3.27
1904 4917 3.000376 CACGATGACACATGATCAACTCG 60.000 47.826 17.97 17.97 35.63 4.18
1938 4951 1.079127 CTCTGACGATTTGGGGCGT 60.079 57.895 0.00 0.00 44.33 5.68
2252 5274 4.318332 CAAAGCATGAGTTCCACTAGACA 58.682 43.478 0.00 0.00 0.00 3.41
2259 5281 5.439721 ACATATAGCAAAGCATGAGTTCCA 58.560 37.500 0.00 0.00 0.00 3.53
2421 5445 7.310634 ACCCTGGGTGATGAATAGTATTACTA 58.689 38.462 19.82 6.03 32.98 1.82
2422 5446 6.151049 ACCCTGGGTGATGAATAGTATTACT 58.849 40.000 19.82 1.30 32.98 2.24
2423 5447 6.435292 ACCCTGGGTGATGAATAGTATTAC 57.565 41.667 19.82 0.00 32.98 1.89
2438 5462 2.677228 GTATGCTGCACCCTGGGT 59.323 61.111 14.05 14.05 35.62 4.51
2439 5463 2.514592 CGTATGCTGCACCCTGGG 60.515 66.667 12.28 12.28 0.00 4.45
2440 5464 0.107897 TAACGTATGCTGCACCCTGG 60.108 55.000 3.57 0.00 0.00 4.45
2441 5465 1.953559 ATAACGTATGCTGCACCCTG 58.046 50.000 3.57 0.00 0.00 4.45
2442 5466 2.170607 AGAATAACGTATGCTGCACCCT 59.829 45.455 3.57 0.00 0.00 4.34
2443 5467 2.561569 AGAATAACGTATGCTGCACCC 58.438 47.619 3.57 0.00 0.00 4.61
2444 5468 3.621268 TGAAGAATAACGTATGCTGCACC 59.379 43.478 3.57 0.00 23.12 5.01
2445 5469 4.494199 GGTGAAGAATAACGTATGCTGCAC 60.494 45.833 3.57 12.44 46.09 4.57
2446 5470 3.621268 GGTGAAGAATAACGTATGCTGCA 59.379 43.478 4.13 4.13 25.87 4.41
2447 5471 3.002348 GGGTGAAGAATAACGTATGCTGC 59.998 47.826 0.00 0.00 0.00 5.25
2448 5472 3.245284 CGGGTGAAGAATAACGTATGCTG 59.755 47.826 0.00 0.00 0.00 4.41
2449 5473 3.131577 TCGGGTGAAGAATAACGTATGCT 59.868 43.478 0.00 0.00 0.00 3.79
2450 5474 3.450578 TCGGGTGAAGAATAACGTATGC 58.549 45.455 0.00 0.00 0.00 3.14
2451 5475 4.049186 CCTCGGGTGAAGAATAACGTATG 58.951 47.826 0.00 0.00 0.00 2.39
2452 5476 3.703052 ACCTCGGGTGAAGAATAACGTAT 59.297 43.478 0.00 0.00 32.98 3.06
2453 5477 3.091545 ACCTCGGGTGAAGAATAACGTA 58.908 45.455 0.00 0.00 32.98 3.57
2454 5478 1.897802 ACCTCGGGTGAAGAATAACGT 59.102 47.619 0.00 0.00 32.98 3.99
2455 5479 2.667473 ACCTCGGGTGAAGAATAACG 57.333 50.000 0.00 0.00 32.98 3.18
2456 5480 5.915175 AGATTACCTCGGGTGAAGAATAAC 58.085 41.667 5.90 0.00 36.19 1.89
2457 5481 6.555463 AAGATTACCTCGGGTGAAGAATAA 57.445 37.500 5.90 0.00 36.19 1.40
2458 5482 6.238842 CGTAAGATTACCTCGGGTGAAGAATA 60.239 42.308 5.90 0.00 36.23 1.75
2459 5483 5.451520 CGTAAGATTACCTCGGGTGAAGAAT 60.452 44.000 5.90 0.00 36.23 2.40
2460 5484 4.142315 CGTAAGATTACCTCGGGTGAAGAA 60.142 45.833 5.90 0.00 36.23 2.52
2461 5485 3.379372 CGTAAGATTACCTCGGGTGAAGA 59.621 47.826 5.90 0.00 36.23 2.87
2462 5486 3.379372 TCGTAAGATTACCTCGGGTGAAG 59.621 47.826 5.90 0.00 45.01 3.02
2463 5487 3.355378 TCGTAAGATTACCTCGGGTGAA 58.645 45.455 5.90 0.00 45.01 3.18
2464 5488 3.003394 TCGTAAGATTACCTCGGGTGA 57.997 47.619 5.90 0.00 45.01 4.02
2500 5524 9.900710 TGTAACTTTTTGTATACGAAATGCAAT 57.099 25.926 22.47 15.13 31.30 3.56
2501 5525 9.900710 ATGTAACTTTTTGTATACGAAATGCAA 57.099 25.926 22.47 13.12 31.30 4.08
2502 5526 9.900710 AATGTAACTTTTTGTATACGAAATGCA 57.099 25.926 22.47 16.15 31.30 3.96
2678 5702 9.985730 TCATACGTAAAAGGAGAACTTAAGAAA 57.014 29.630 10.09 0.00 38.85 2.52
2679 5703 9.985730 TTCATACGTAAAAGGAGAACTTAAGAA 57.014 29.630 10.09 0.00 38.85 2.52
2680 5704 9.635520 CTTCATACGTAAAAGGAGAACTTAAGA 57.364 33.333 10.09 0.00 38.85 2.10
2681 5705 9.420551 ACTTCATACGTAAAAGGAGAACTTAAG 57.579 33.333 19.38 0.00 38.85 1.85
2684 5708 9.420551 CTTACTTCATACGTAAAAGGAGAACTT 57.579 33.333 19.38 5.31 42.52 2.66
2685 5709 8.800332 TCTTACTTCATACGTAAAAGGAGAACT 58.200 33.333 19.38 5.82 0.00 3.01
2686 5710 8.858186 GTCTTACTTCATACGTAAAAGGAGAAC 58.142 37.037 19.38 11.97 0.00 3.01
2687 5711 8.800332 AGTCTTACTTCATACGTAAAAGGAGAA 58.200 33.333 19.38 12.05 0.00 2.87
2688 5712 8.345724 AGTCTTACTTCATACGTAAAAGGAGA 57.654 34.615 19.38 17.82 0.00 3.71
2689 5713 9.719279 CTAGTCTTACTTCATACGTAAAAGGAG 57.281 37.037 19.38 16.49 0.00 3.69
2690 5714 9.453572 TCTAGTCTTACTTCATACGTAAAAGGA 57.546 33.333 19.38 12.03 0.00 3.36
3096 6120 0.681733 AGGGTCGCGCTATTCATCAT 59.318 50.000 5.56 0.00 0.00 2.45
3097 6121 0.464036 AAGGGTCGCGCTATTCATCA 59.536 50.000 5.56 0.00 0.00 3.07
3098 6122 1.583054 AAAGGGTCGCGCTATTCATC 58.417 50.000 5.56 0.00 0.00 2.92
3099 6123 2.902705 TAAAGGGTCGCGCTATTCAT 57.097 45.000 5.56 0.00 0.00 2.57
3100 6124 2.676632 TTAAAGGGTCGCGCTATTCA 57.323 45.000 5.56 0.00 0.00 2.57
3101 6125 4.345271 TTTTTAAAGGGTCGCGCTATTC 57.655 40.909 5.56 0.00 0.00 1.75
3145 6169 1.774110 AAGCACAAACATGTGGGACA 58.226 45.000 0.00 0.00 39.97 4.02
3149 6173 3.641648 CCAAGTAAGCACAAACATGTGG 58.358 45.455 0.00 0.00 39.97 4.17
3183 6207 3.095912 ACCAGGTGGCTATAAAAACCC 57.904 47.619 0.00 0.00 39.32 4.11
3191 6215 4.223477 TCGTTAGTAAAACCAGGTGGCTAT 59.777 41.667 0.00 0.00 39.32 2.97
3198 6222 5.365403 TTGCAATCGTTAGTAAAACCAGG 57.635 39.130 0.00 0.00 0.00 4.45
3199 6223 6.129194 GCTTTTGCAATCGTTAGTAAAACCAG 60.129 38.462 0.00 0.00 46.58 4.00
3270 6294 5.596836 AGTTTCCACAAACATGTCATTGT 57.403 34.783 9.62 9.62 43.98 2.71
3271 6295 6.420604 GGTTAGTTTCCACAAACATGTCATTG 59.579 38.462 0.00 3.50 43.98 2.82
3272 6296 6.512297 GGTTAGTTTCCACAAACATGTCATT 58.488 36.000 0.00 0.00 43.98 2.57
3273 6297 5.278266 CGGTTAGTTTCCACAAACATGTCAT 60.278 40.000 0.00 0.00 43.98 3.06
3274 6298 4.035792 CGGTTAGTTTCCACAAACATGTCA 59.964 41.667 0.00 0.00 43.98 3.58
3275 6299 4.035909 ACGGTTAGTTTCCACAAACATGTC 59.964 41.667 0.00 0.00 43.98 3.06
3276 6300 3.949113 ACGGTTAGTTTCCACAAACATGT 59.051 39.130 0.00 0.00 43.98 3.21
3277 6301 4.561735 ACGGTTAGTTTCCACAAACATG 57.438 40.909 0.00 0.00 43.98 3.21
3318 6342 7.365840 ACGAAAGGATTCTAAAGAATGTCAC 57.634 36.000 9.88 0.00 44.14 3.67
3349 6377 9.522804 GAGTATACATTCGAGAGATCAGTTTTT 57.477 33.333 5.50 0.00 41.60 1.94
3351 6379 8.226819 TGAGTATACATTCGAGAGATCAGTTT 57.773 34.615 5.50 0.00 41.60 2.66
3357 6385 5.478332 TGCCATGAGTATACATTCGAGAGAT 59.522 40.000 5.50 0.00 41.60 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.