Multiple sequence alignment - TraesCS6B01G370300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G370300 chr6B 100.000 4343 0 0 1 4343 643895917 643900259 0.000000e+00 8021.0
1 TraesCS6B01G370300 chr6B 73.835 558 127 16 1540 2089 643639879 643640425 2.050000e-48 204.0
2 TraesCS6B01G370300 chr6D 93.690 2821 107 21 760 3520 427570818 427568009 0.000000e+00 4157.0
3 TraesCS6B01G370300 chr6D 84.295 312 18 12 471 761 427571154 427570853 4.280000e-70 276.0
4 TraesCS6B01G370300 chr6D 72.997 911 196 43 1199 2089 427700406 427699526 1.540000e-69 274.0
5 TraesCS6B01G370300 chr6D 82.692 260 39 4 1 256 427571716 427571459 4.370000e-55 226.0
6 TraesCS6B01G370300 chr6D 88.281 128 10 3 3671 3798 427568025 427567903 9.730000e-32 148.0
7 TraesCS6B01G370300 chr6D 84.211 95 11 3 313 406 97928403 97928312 5.980000e-14 89.8
8 TraesCS6B01G370300 chr6D 84.694 98 4 8 313 406 208743748 208743838 2.150000e-13 87.9
9 TraesCS6B01G370300 chr6D 84.536 97 4 7 313 405 208769743 208769832 7.740000e-13 86.1
10 TraesCS6B01G370300 chr6A 91.686 3067 151 48 519 3520 572574875 572571848 0.000000e+00 4156.0
11 TraesCS6B01G370300 chr6A 83.947 380 53 7 3971 4343 582248276 582247898 1.490000e-94 357.0
12 TraesCS6B01G370300 chr6A 72.173 902 218 27 1200 2089 571791384 571790504 1.210000e-60 244.0
13 TraesCS6B01G370300 chr6A 72.247 908 208 38 1199 2089 572336289 572337169 1.560000e-59 241.0
14 TraesCS6B01G370300 chr6A 100.000 32 0 0 240 271 572599157 572599126 4.690000e-05 60.2
15 TraesCS6B01G370300 chr7B 92.702 1014 61 5 1895 2908 1853297 1852297 0.000000e+00 1450.0
16 TraesCS6B01G370300 chr7B 93.048 935 48 11 978 1898 1875967 1875036 0.000000e+00 1351.0
17 TraesCS6B01G370300 chr7B 96.711 152 4 1 3521 3671 60698512 60698361 7.210000e-63 252.0
18 TraesCS6B01G370300 chr5D 74.973 915 175 46 1197 2089 414014240 414013358 5.300000e-99 372.0
19 TraesCS6B01G370300 chr5D 75.873 315 68 8 2633 2943 473116126 473115816 2.090000e-33 154.0
20 TraesCS6B01G370300 chr5A 74.127 916 179 48 1198 2089 526525647 526524766 4.190000e-85 326.0
21 TraesCS6B01G370300 chr5A 73.846 325 79 6 2633 2954 593088661 593088340 1.640000e-24 124.0
22 TraesCS6B01G370300 chr5A 84.000 100 6 7 313 408 652993701 652993608 2.150000e-13 87.9
23 TraesCS6B01G370300 chr3B 93.750 176 6 4 3510 3682 785328300 785328473 4.310000e-65 259.0
24 TraesCS6B01G370300 chrUn 96.154 156 5 1 3516 3670 82169255 82169410 2.000000e-63 254.0
25 TraesCS6B01G370300 chrUn 87.013 77 7 3 332 406 93831682 93831607 2.780000e-12 84.2
26 TraesCS6B01G370300 chrUn 93.750 48 3 0 405 452 63513244 63513197 6.020000e-09 73.1
27 TraesCS6B01G370300 chr5B 96.732 153 4 1 3520 3671 690679694 690679542 2.000000e-63 254.0
28 TraesCS6B01G370300 chr5B 75.926 324 74 4 2633 2954 580513867 580513546 3.480000e-36 163.0
29 TraesCS6B01G370300 chr5B 97.778 45 1 0 401 445 595011040 595010996 1.290000e-10 78.7
30 TraesCS6B01G370300 chr3A 96.732 153 4 1 3521 3672 225897016 225896864 2.000000e-63 254.0
31 TraesCS6B01G370300 chr2B 96.732 153 4 1 3520 3671 262870142 262870294 2.000000e-63 254.0
32 TraesCS6B01G370300 chr2A 95.062 162 6 2 3512 3671 678376399 678376560 2.000000e-63 254.0
33 TraesCS6B01G370300 chr2A 80.449 312 40 13 3926 4221 194134976 194135282 7.310000e-53 219.0
34 TraesCS6B01G370300 chr2A 97.727 44 1 0 402 445 343419868 343419825 4.660000e-10 76.8
35 TraesCS6B01G370300 chr1A 95.597 159 5 2 3516 3672 388707659 388707817 2.000000e-63 254.0
36 TraesCS6B01G370300 chr1B 96.711 152 4 1 3521 3671 600258947 600259098 7.210000e-63 252.0
37 TraesCS6B01G370300 chr4D 77.150 407 79 10 2523 2919 50642769 50643171 1.570000e-54 224.0
38 TraesCS6B01G370300 chr4D 97.619 42 1 0 402 443 63222872 63222913 6.020000e-09 73.1
39 TraesCS6B01G370300 chr7A 80.511 313 38 14 3926 4221 646929566 646929872 7.310000e-53 219.0
40 TraesCS6B01G370300 chr7A 80.128 312 41 13 3926 4221 646928534 646928840 3.400000e-51 213.0
41 TraesCS6B01G370300 chr4B 76.296 405 86 7 2523 2919 74442708 74443110 1.580000e-49 207.0
42 TraesCS6B01G370300 chr4A 75.845 414 90 8 2526 2931 546297364 546296953 7.360000e-48 202.0
43 TraesCS6B01G370300 chr4A 84.375 96 9 4 313 406 55375763 55375672 5.980000e-14 89.8
44 TraesCS6B01G370300 chr3D 95.833 48 1 1 404 451 82752859 82752813 4.660000e-10 76.8
45 TraesCS6B01G370300 chr3D 95.833 48 1 1 404 451 131227859 131227813 4.660000e-10 76.8
46 TraesCS6B01G370300 chr2D 97.727 44 1 0 402 445 566655080 566655123 4.660000e-10 76.8
47 TraesCS6B01G370300 chr1D 94.118 51 2 1 402 452 483521278 483521327 4.660000e-10 76.8
48 TraesCS6B01G370300 chr7D 95.745 47 1 1 405 451 64848572 64848617 1.680000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G370300 chr6B 643895917 643900259 4342 False 8021.00 8021 100.0000 1 4343 1 chr6B.!!$F2 4342
1 TraesCS6B01G370300 chr6B 643639879 643640425 546 False 204.00 204 73.8350 1540 2089 1 chr6B.!!$F1 549
2 TraesCS6B01G370300 chr6D 427567903 427571716 3813 True 1201.75 4157 87.2395 1 3798 4 chr6D.!!$R3 3797
3 TraesCS6B01G370300 chr6D 427699526 427700406 880 True 274.00 274 72.9970 1199 2089 1 chr6D.!!$R2 890
4 TraesCS6B01G370300 chr6A 572571848 572574875 3027 True 4156.00 4156 91.6860 519 3520 1 chr6A.!!$R2 3001
5 TraesCS6B01G370300 chr6A 571790504 571791384 880 True 244.00 244 72.1730 1200 2089 1 chr6A.!!$R1 889
6 TraesCS6B01G370300 chr6A 572336289 572337169 880 False 241.00 241 72.2470 1199 2089 1 chr6A.!!$F1 890
7 TraesCS6B01G370300 chr7B 1852297 1853297 1000 True 1450.00 1450 92.7020 1895 2908 1 chr7B.!!$R1 1013
8 TraesCS6B01G370300 chr7B 1875036 1875967 931 True 1351.00 1351 93.0480 978 1898 1 chr7B.!!$R2 920
9 TraesCS6B01G370300 chr5D 414013358 414014240 882 True 372.00 372 74.9730 1197 2089 1 chr5D.!!$R1 892
10 TraesCS6B01G370300 chr5A 526524766 526525647 881 True 326.00 326 74.1270 1198 2089 1 chr5A.!!$R1 891
11 TraesCS6B01G370300 chr7A 646928534 646929872 1338 False 216.00 219 80.3195 3926 4221 2 chr7A.!!$F1 295

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
422 563 0.192566 ATACTCCCTCCGCCCCATAA 59.807 55.000 0.00 0.00 0.0 1.90 F
976 1197 0.394352 ATCCCCTCGCATTGACCAAC 60.394 55.000 0.00 0.00 0.0 3.77 F
1551 1797 0.886490 CTGCCAAGTTCAACGCCTCT 60.886 55.000 0.00 0.00 0.0 3.69 F
3209 3472 1.734137 CGTACGAGATCACCCTGGG 59.266 63.158 10.44 12.28 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2349 2612 2.202756 GTCGACGGGATGAGGTGC 60.203 66.667 0.00 0.00 0.0 5.01 R
2748 3011 0.032952 TGTCCAGGTTGTACGCTGTC 59.967 55.000 0.00 0.00 0.0 3.51 R
3238 3501 0.600057 GACCCGAACGAGTACTTGGT 59.400 55.000 14.75 7.85 0.0 3.67 R
4268 4579 0.035317 TGGTTGCAGCTCTGACGATT 59.965 50.000 0.00 0.00 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.558554 AAGGTTCGATCGTCCGGCTG 62.559 60.000 15.94 0.00 0.00 4.85
21 22 2.181021 GTTCGATCGTCCGGCTGT 59.819 61.111 15.94 0.00 0.00 4.40
27 28 0.953960 GATCGTCCGGCTGTGGTTTT 60.954 55.000 0.00 0.00 0.00 2.43
33 34 1.626321 TCCGGCTGTGGTTTTATGAGA 59.374 47.619 0.00 0.00 0.00 3.27
35 36 2.161609 CCGGCTGTGGTTTTATGAGAAC 59.838 50.000 0.00 0.00 0.00 3.01
37 38 3.440173 CGGCTGTGGTTTTATGAGAACAT 59.560 43.478 0.00 0.00 40.16 2.71
39 40 4.380867 GGCTGTGGTTTTATGAGAACATGG 60.381 45.833 0.00 0.00 37.87 3.66
42 43 5.882040 TGTGGTTTTATGAGAACATGGGTA 58.118 37.500 0.00 0.00 37.87 3.69
47 48 6.365520 GTTTTATGAGAACATGGGTAGGGAT 58.634 40.000 0.00 0.00 37.87 3.85
53 54 2.579624 ACATGGGTAGGGATGGTGTA 57.420 50.000 0.00 0.00 0.00 2.90
59 60 0.759346 GTAGGGATGGTGTAGGCCTG 59.241 60.000 17.99 0.00 0.00 4.85
64 65 2.311688 GATGGTGTAGGCCTGGTCGG 62.312 65.000 17.99 0.00 0.00 4.79
73 74 4.308458 CCTGGTCGGACGTGGCAA 62.308 66.667 0.00 0.00 33.16 4.52
91 92 4.039357 CGGTGTCCAGACGCGTCT 62.039 66.667 34.98 34.98 42.41 4.18
109 110 3.913107 GGGCCTCCCATATCAGCT 58.087 61.111 0.84 0.00 44.65 4.24
111 112 1.130054 GGGCCTCCCATATCAGCTCA 61.130 60.000 0.84 0.00 44.65 4.26
112 113 0.990374 GGCCTCCCATATCAGCTCAT 59.010 55.000 0.00 0.00 0.00 2.90
137 274 1.869767 GAGCTGAGTATGGGAATTGCG 59.130 52.381 0.00 0.00 0.00 4.85
145 282 2.044946 GGGAATTGCGGGTCAGCT 60.045 61.111 0.00 0.00 38.13 4.24
147 284 2.464459 GGAATTGCGGGTCAGCTCG 61.464 63.158 0.00 0.00 42.50 5.03
158 295 2.204461 TCAGCTCGGACGTTTGGGA 61.204 57.895 0.00 0.00 0.00 4.37
159 296 1.738099 CAGCTCGGACGTTTGGGAG 60.738 63.158 0.00 0.00 0.00 4.30
160 297 2.207924 AGCTCGGACGTTTGGGAGT 61.208 57.895 0.00 0.00 0.00 3.85
161 298 1.301479 GCTCGGACGTTTGGGAGTT 60.301 57.895 0.00 0.00 0.00 3.01
162 299 1.566018 GCTCGGACGTTTGGGAGTTG 61.566 60.000 0.00 0.00 0.00 3.16
163 300 1.566018 CTCGGACGTTTGGGAGTTGC 61.566 60.000 0.00 0.00 0.00 4.17
164 301 2.613506 CGGACGTTTGGGAGTTGCC 61.614 63.158 0.00 0.00 0.00 4.52
165 302 1.228154 GGACGTTTGGGAGTTGCCT 60.228 57.895 0.00 0.00 36.66 4.75
166 303 1.235281 GGACGTTTGGGAGTTGCCTC 61.235 60.000 0.00 0.00 36.66 4.70
175 312 3.363787 GAGTTGCCTCCAATTGGGT 57.636 52.632 24.29 0.88 38.11 4.51
176 313 1.177401 GAGTTGCCTCCAATTGGGTC 58.823 55.000 24.29 13.45 38.11 4.46
177 314 0.482446 AGTTGCCTCCAATTGGGTCA 59.518 50.000 24.29 15.73 38.11 4.02
178 315 0.603065 GTTGCCTCCAATTGGGTCAC 59.397 55.000 24.29 11.90 38.11 3.67
185 323 4.020662 GCCTCCAATTGGGTCACATTTTTA 60.021 41.667 24.29 0.00 38.11 1.52
194 332 4.956700 TGGGTCACATTTTTAGGTTTGACA 59.043 37.500 0.00 0.00 36.00 3.58
202 340 6.153680 ACATTTTTAGGTTTGACAAGTGACCA 59.846 34.615 9.63 0.00 34.60 4.02
204 342 4.764050 TTAGGTTTGACAAGTGACCAGA 57.236 40.909 9.63 0.00 34.60 3.86
213 351 2.048127 GTGACCAGACTCACCGCC 60.048 66.667 0.00 0.00 35.44 6.13
235 376 0.532573 CCGAGGGTGGATATGGATCG 59.467 60.000 0.00 0.00 32.28 3.69
273 414 2.472695 TAGCACCACTAGCACCAAAG 57.527 50.000 0.00 0.00 0.00 2.77
282 423 2.038557 ACTAGCACCAAAGTGGATCGTT 59.961 45.455 0.18 0.00 44.69 3.85
283 424 1.238439 AGCACCAAAGTGGATCGTTG 58.762 50.000 0.18 0.00 44.69 4.10
284 425 0.387239 GCACCAAAGTGGATCGTTGC 60.387 55.000 0.18 0.00 44.69 4.17
293 434 7.147915 ACCAAAGTGGATCGTTGCATAATAATT 60.148 33.333 0.18 0.00 40.96 1.40
294 435 7.167968 CCAAAGTGGATCGTTGCATAATAATTG 59.832 37.037 0.00 0.00 40.96 2.32
302 443 9.128107 GATCGTTGCATAATAATTGTAATTGGG 57.872 33.333 0.00 0.00 0.00 4.12
305 446 7.306515 CGTTGCATAATAATTGTAATTGGGTGC 60.307 37.037 0.00 6.16 0.00 5.01
311 452 7.601705 AATAATTGTAATTGGGTGCAGCTAT 57.398 32.000 16.65 7.03 0.00 2.97
325 466 2.928757 GCAGCTATGTCTCAGTCAAGTG 59.071 50.000 0.00 0.00 0.00 3.16
345 486 8.959548 TCAAGTGACATATAACATGCAAGAAAT 58.040 29.630 0.00 0.00 0.00 2.17
357 498 8.667076 AACATGCAAGAAATAAAAGAAAAGCT 57.333 26.923 0.00 0.00 0.00 3.74
358 499 8.080083 ACATGCAAGAAATAAAAGAAAAGCTG 57.920 30.769 0.00 0.00 0.00 4.24
360 501 8.767085 CATGCAAGAAATAAAAGAAAAGCTGAA 58.233 29.630 0.00 0.00 0.00 3.02
400 541 7.307493 TGAATCTCAATGTAAAATCTCACGG 57.693 36.000 0.00 0.00 0.00 4.94
404 545 9.784531 AATCTCAATGTAAAATCTCACGGATAT 57.215 29.630 0.00 0.00 33.71 1.63
406 547 9.692749 TCTCAATGTAAAATCTCACGGATATAC 57.307 33.333 0.00 0.00 33.71 1.47
407 548 9.698309 CTCAATGTAAAATCTCACGGATATACT 57.302 33.333 0.00 0.00 33.71 2.12
408 549 9.692749 TCAATGTAAAATCTCACGGATATACTC 57.307 33.333 0.00 0.00 33.71 2.59
409 550 8.926710 CAATGTAAAATCTCACGGATATACTCC 58.073 37.037 0.00 0.00 41.07 3.85
410 551 6.989659 TGTAAAATCTCACGGATATACTCCC 58.010 40.000 0.00 0.00 41.49 4.30
411 552 6.781014 TGTAAAATCTCACGGATATACTCCCT 59.219 38.462 0.00 0.00 41.49 4.20
412 553 5.986501 AAATCTCACGGATATACTCCCTC 57.013 43.478 0.00 0.00 41.49 4.30
413 554 3.436577 TCTCACGGATATACTCCCTCC 57.563 52.381 0.00 0.00 41.49 4.30
416 557 2.190756 CGGATATACTCCCTCCGCC 58.809 63.158 0.00 0.00 44.65 6.13
417 558 1.321074 CGGATATACTCCCTCCGCCC 61.321 65.000 0.00 0.00 44.65 6.13
418 559 0.976590 GGATATACTCCCTCCGCCCC 60.977 65.000 0.00 0.00 38.19 5.80
419 560 0.252103 GATATACTCCCTCCGCCCCA 60.252 60.000 0.00 0.00 0.00 4.96
420 561 0.417841 ATATACTCCCTCCGCCCCAT 59.582 55.000 0.00 0.00 0.00 4.00
421 562 1.086565 TATACTCCCTCCGCCCCATA 58.913 55.000 0.00 0.00 0.00 2.74
422 563 0.192566 ATACTCCCTCCGCCCCATAA 59.807 55.000 0.00 0.00 0.00 1.90
423 564 0.192566 TACTCCCTCCGCCCCATAAT 59.807 55.000 0.00 0.00 0.00 1.28
424 565 0.192566 ACTCCCTCCGCCCCATAATA 59.807 55.000 0.00 0.00 0.00 0.98
425 566 1.203440 ACTCCCTCCGCCCCATAATAT 60.203 52.381 0.00 0.00 0.00 1.28
426 567 2.045326 ACTCCCTCCGCCCCATAATATA 59.955 50.000 0.00 0.00 0.00 0.86
427 568 3.112263 CTCCCTCCGCCCCATAATATAA 58.888 50.000 0.00 0.00 0.00 0.98
428 569 3.112263 TCCCTCCGCCCCATAATATAAG 58.888 50.000 0.00 0.00 0.00 1.73
429 570 3.112263 CCCTCCGCCCCATAATATAAGA 58.888 50.000 0.00 0.00 0.00 2.10
430 571 3.134804 CCCTCCGCCCCATAATATAAGAG 59.865 52.174 0.00 0.00 0.00 2.85
431 572 3.775316 CCTCCGCCCCATAATATAAGAGT 59.225 47.826 0.00 0.00 0.00 3.24
432 573 4.383118 CCTCCGCCCCATAATATAAGAGTG 60.383 50.000 0.00 0.00 0.00 3.51
433 574 4.164981 TCCGCCCCATAATATAAGAGTGT 58.835 43.478 0.00 0.00 0.00 3.55
434 575 4.595781 TCCGCCCCATAATATAAGAGTGTT 59.404 41.667 0.00 0.00 0.00 3.32
435 576 5.072600 TCCGCCCCATAATATAAGAGTGTTT 59.927 40.000 0.00 0.00 0.00 2.83
436 577 5.768164 CCGCCCCATAATATAAGAGTGTTTT 59.232 40.000 0.00 0.00 0.00 2.43
437 578 6.264518 CCGCCCCATAATATAAGAGTGTTTTT 59.735 38.462 0.00 0.00 0.00 1.94
461 602 8.891671 TTTACACTAACATTAACCGAGACTTT 57.108 30.769 0.00 0.00 0.00 2.66
462 603 8.891671 TTACACTAACATTAACCGAGACTTTT 57.108 30.769 0.00 0.00 0.00 2.27
463 604 9.979578 TTACACTAACATTAACCGAGACTTTTA 57.020 29.630 0.00 0.00 0.00 1.52
464 605 8.891671 ACACTAACATTAACCGAGACTTTTAA 57.108 30.769 0.00 0.00 0.00 1.52
465 606 8.768019 ACACTAACATTAACCGAGACTTTTAAC 58.232 33.333 0.00 0.00 0.00 2.01
466 607 7.948363 CACTAACATTAACCGAGACTTTTAACG 59.052 37.037 0.00 0.00 0.00 3.18
467 608 7.867403 ACTAACATTAACCGAGACTTTTAACGA 59.133 33.333 0.00 0.00 0.00 3.85
468 609 7.481275 AACATTAACCGAGACTTTTAACGAA 57.519 32.000 0.00 0.00 0.00 3.85
469 610 7.113704 ACATTAACCGAGACTTTTAACGAAG 57.886 36.000 0.00 0.00 0.00 3.79
482 623 8.004585 ACTTTTAACGAAGTCTTAGTTGATCG 57.995 34.615 18.20 4.15 45.00 3.69
494 635 6.470877 GTCTTAGTTGATCGAGAGTTAGCAAG 59.529 42.308 0.00 0.00 0.00 4.01
498 639 4.362932 TGATCGAGAGTTAGCAAGACTG 57.637 45.455 0.00 0.00 0.00 3.51
504 645 5.462398 TCGAGAGTTAGCAAGACTGTTTTTC 59.538 40.000 0.00 0.00 0.00 2.29
506 647 6.018669 CGAGAGTTAGCAAGACTGTTTTTCTT 60.019 38.462 0.00 0.00 33.38 2.52
507 648 7.169308 CGAGAGTTAGCAAGACTGTTTTTCTTA 59.831 37.037 0.00 0.00 31.86 2.10
508 649 8.144155 AGAGTTAGCAAGACTGTTTTTCTTAC 57.856 34.615 0.00 0.00 31.86 2.34
509 650 6.945072 AGTTAGCAAGACTGTTTTTCTTACG 58.055 36.000 0.00 0.00 31.86 3.18
510 651 4.813296 AGCAAGACTGTTTTTCTTACGG 57.187 40.909 0.00 0.00 31.86 4.02
516 657 4.587684 AGACTGTTTTTCTTACGGGAGAGA 59.412 41.667 0.00 0.00 0.00 3.10
536 677 9.069082 GGAGAGATAGCAAGACTGTTAGTAATA 57.931 37.037 0.00 0.00 0.00 0.98
551 692 9.880157 CTGTTAGTAATAAAGTAAGTTGGCCTA 57.120 33.333 3.32 0.00 0.00 3.93
603 759 5.297547 TGTCTAACACAAATCACCACTCTC 58.702 41.667 0.00 0.00 29.30 3.20
606 762 3.131709 ACACAAATCACCACTCTCCTG 57.868 47.619 0.00 0.00 0.00 3.86
611 767 1.859302 ATCACCACTCTCCTGACCTC 58.141 55.000 0.00 0.00 0.00 3.85
615 771 1.599606 CCACTCTCCTGACCTCGGTG 61.600 65.000 0.00 0.00 0.00 4.94
670 829 0.459489 GCTGCCTCTACAGAGTCCAG 59.541 60.000 14.86 14.86 40.25 3.86
683 842 1.153745 GTCCAGCACCAGTAGCGAG 60.154 63.158 0.00 0.00 37.01 5.03
685 844 2.882777 CAGCACCAGTAGCGAGCG 60.883 66.667 0.00 0.00 37.01 5.03
686 845 3.062466 AGCACCAGTAGCGAGCGA 61.062 61.111 0.00 0.00 37.01 4.93
687 846 2.881352 GCACCAGTAGCGAGCGAC 60.881 66.667 0.00 0.00 0.00 5.19
688 847 2.202623 CACCAGTAGCGAGCGACC 60.203 66.667 4.76 0.00 0.00 4.79
689 848 3.450115 ACCAGTAGCGAGCGACCC 61.450 66.667 4.76 0.00 0.00 4.46
690 849 3.141488 CCAGTAGCGAGCGACCCT 61.141 66.667 4.76 0.00 0.00 4.34
706 865 3.243401 CGACCCTTGCATTATAAAAGGCC 60.243 47.826 8.40 0.00 41.66 5.19
805 1012 0.676782 AAACCATACTCTGCCACGCC 60.677 55.000 0.00 0.00 0.00 5.68
810 1024 2.521958 ATACTCTGCCACGCCACCAC 62.522 60.000 0.00 0.00 0.00 4.16
822 1036 1.168714 GCCACCACAAGATCTCCAAC 58.831 55.000 0.00 0.00 0.00 3.77
823 1037 1.826385 CCACCACAAGATCTCCAACC 58.174 55.000 0.00 0.00 0.00 3.77
824 1038 1.614317 CCACCACAAGATCTCCAACCC 60.614 57.143 0.00 0.00 0.00 4.11
825 1039 0.698818 ACCACAAGATCTCCAACCCC 59.301 55.000 0.00 0.00 0.00 4.95
826 1040 0.698238 CCACAAGATCTCCAACCCCA 59.302 55.000 0.00 0.00 0.00 4.96
827 1041 1.075374 CCACAAGATCTCCAACCCCAA 59.925 52.381 0.00 0.00 0.00 4.12
888 1102 3.330720 CCCCACCCTCCACACCTC 61.331 72.222 0.00 0.00 0.00 3.85
889 1103 2.203998 CCCACCCTCCACACCTCT 60.204 66.667 0.00 0.00 0.00 3.69
920 1141 3.276846 CCCTTTAATCGCCGCCGG 61.277 66.667 0.00 0.00 34.56 6.13
960 1181 1.227263 CCCGTCACCATCGTCATCC 60.227 63.158 0.00 0.00 0.00 3.51
976 1197 0.394352 ATCCCCTCGCATTGACCAAC 60.394 55.000 0.00 0.00 0.00 3.77
995 1216 4.899239 CATCTCCTCCGGCGCCAC 62.899 72.222 28.98 0.00 0.00 5.01
1096 1332 1.518572 CCGCAGTCCACGTACATCC 60.519 63.158 0.00 0.00 0.00 3.51
1467 1713 4.749310 CCGCTCAACCGCAGCTCT 62.749 66.667 0.00 0.00 34.45 4.09
1551 1797 0.886490 CTGCCAAGTTCAACGCCTCT 60.886 55.000 0.00 0.00 0.00 3.69
2349 2612 4.933064 GAGCTCATCGCCGACCCG 62.933 72.222 9.40 0.00 40.39 5.28
2748 3011 2.507102 AAGTCGGCGCTCATGACG 60.507 61.111 7.64 11.71 37.69 4.35
2751 3014 3.743636 TCGGCGCTCATGACGACA 61.744 61.111 19.04 7.56 38.93 4.35
3209 3472 1.734137 CGTACGAGATCACCCTGGG 59.266 63.158 10.44 12.28 0.00 4.45
3238 3501 2.211410 AACCCGGTGATCGTGGACA 61.211 57.895 0.00 0.00 37.11 4.02
3349 3612 1.202417 CGGCGTCCATGTAGAGATGTT 60.202 52.381 0.00 0.00 0.00 2.71
3373 3636 1.016130 GGATGCTGGTGTCACACGAG 61.016 60.000 15.27 15.27 41.86 4.18
3381 3651 2.168936 TGGTGTCACACGAGGTTTACTT 59.831 45.455 0.73 0.00 34.83 2.24
3384 3654 3.866910 GTGTCACACGAGGTTTACTTTGA 59.133 43.478 0.00 0.00 0.00 2.69
3406 3682 1.464023 CGCGCCTGTGAATGTTTACTG 60.464 52.381 0.00 0.00 0.00 2.74
3408 3687 1.464023 CGCCTGTGAATGTTTACTGCG 60.464 52.381 9.33 9.33 34.47 5.18
3458 3742 5.360999 TGGATCATAATACTATCTCGGGCTG 59.639 44.000 0.00 0.00 0.00 4.85
3473 3757 3.016736 CGGGCTGGATGTTGTTTATTCT 58.983 45.455 0.00 0.00 0.00 2.40
3481 3776 3.889196 TGTTGTTTATTCTCGGTGCAC 57.111 42.857 8.80 8.80 0.00 4.57
3520 3815 5.594926 ACATGCCACAAGAGAAAAGAAAAG 58.405 37.500 0.00 0.00 0.00 2.27
3521 3816 5.360714 ACATGCCACAAGAGAAAAGAAAAGA 59.639 36.000 0.00 0.00 0.00 2.52
3522 3817 5.505173 TGCCACAAGAGAAAAGAAAAGAG 57.495 39.130 0.00 0.00 0.00 2.85
3523 3818 5.192927 TGCCACAAGAGAAAAGAAAAGAGA 58.807 37.500 0.00 0.00 0.00 3.10
3524 3819 5.652014 TGCCACAAGAGAAAAGAAAAGAGAA 59.348 36.000 0.00 0.00 0.00 2.87
3525 3820 5.974158 GCCACAAGAGAAAAGAAAAGAGAAC 59.026 40.000 0.00 0.00 0.00 3.01
3526 3821 6.183360 GCCACAAGAGAAAAGAAAAGAGAACT 60.183 38.462 0.00 0.00 0.00 3.01
3527 3822 7.012421 GCCACAAGAGAAAAGAAAAGAGAACTA 59.988 37.037 0.00 0.00 0.00 2.24
3528 3823 8.555361 CCACAAGAGAAAAGAAAAGAGAACTAG 58.445 37.037 0.00 0.00 0.00 2.57
3529 3824 8.555361 CACAAGAGAAAAGAAAAGAGAACTAGG 58.445 37.037 0.00 0.00 0.00 3.02
3530 3825 7.227711 ACAAGAGAAAAGAAAAGAGAACTAGGC 59.772 37.037 0.00 0.00 0.00 3.93
3531 3826 7.073457 AGAGAAAAGAAAAGAGAACTAGGCT 57.927 36.000 0.00 0.00 0.00 4.58
3532 3827 6.934083 AGAGAAAAGAAAAGAGAACTAGGCTG 59.066 38.462 0.00 0.00 0.00 4.85
3533 3828 6.596621 AGAAAAGAAAAGAGAACTAGGCTGT 58.403 36.000 0.00 0.00 0.00 4.40
3534 3829 7.736893 AGAAAAGAAAAGAGAACTAGGCTGTA 58.263 34.615 0.00 0.00 0.00 2.74
3535 3830 7.875554 AGAAAAGAAAAGAGAACTAGGCTGTAG 59.124 37.037 0.00 0.00 0.00 2.74
3536 3831 5.079689 AGAAAAGAGAACTAGGCTGTAGC 57.920 43.478 0.00 0.00 41.14 3.58
3553 3848 2.187946 CCTAGTGGCAAGGGAGCG 59.812 66.667 0.00 0.00 34.64 5.03
3554 3849 2.512515 CTAGTGGCAAGGGAGCGC 60.513 66.667 0.00 0.00 34.64 5.92
3555 3850 3.315142 CTAGTGGCAAGGGAGCGCA 62.315 63.158 11.47 0.00 34.64 6.09
3556 3851 3.315142 TAGTGGCAAGGGAGCGCAG 62.315 63.158 11.47 0.00 34.64 5.18
3574 3869 3.555324 TGGCGTCTCCAGCAACCA 61.555 61.111 0.00 0.00 40.72 3.67
3575 3870 2.743928 GGCGTCTCCAGCAACCAG 60.744 66.667 0.00 0.00 36.08 4.00
3576 3871 2.743928 GCGTCTCCAGCAACCAGG 60.744 66.667 0.00 0.00 34.19 4.45
3577 3872 2.046892 CGTCTCCAGCAACCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
3578 3873 2.883828 CGTCTCCAGCAACCAGGGT 61.884 63.158 0.00 0.00 0.00 4.34
3579 3874 1.456287 GTCTCCAGCAACCAGGGTT 59.544 57.895 0.00 0.00 39.13 4.11
3580 3875 0.606673 GTCTCCAGCAACCAGGGTTC 60.607 60.000 0.00 0.00 36.00 3.62
3581 3876 1.672356 CTCCAGCAACCAGGGTTCG 60.672 63.158 0.00 0.00 36.00 3.95
3582 3877 2.111999 CTCCAGCAACCAGGGTTCGA 62.112 60.000 0.00 0.00 36.00 3.71
3583 3878 1.672356 CCAGCAACCAGGGTTCGAG 60.672 63.158 0.00 0.00 36.00 4.04
3584 3879 2.032681 AGCAACCAGGGTTCGAGC 59.967 61.111 0.00 2.37 36.00 5.03
3585 3880 3.056328 GCAACCAGGGTTCGAGCC 61.056 66.667 10.28 10.28 36.00 4.70
3586 3881 2.429930 CAACCAGGGTTCGAGCCA 59.570 61.111 20.67 0.00 38.48 4.75
3587 3882 1.966451 CAACCAGGGTTCGAGCCAC 60.966 63.158 20.67 9.47 38.48 5.01
3588 3883 3.530910 AACCAGGGTTCGAGCCACG 62.531 63.158 20.67 9.76 38.48 4.94
3589 3884 4.003788 CCAGGGTTCGAGCCACGT 62.004 66.667 20.67 0.71 43.13 4.49
3590 3885 2.432628 CAGGGTTCGAGCCACGTC 60.433 66.667 20.67 2.28 43.13 4.34
3591 3886 4.052229 AGGGTTCGAGCCACGTCG 62.052 66.667 20.67 0.00 43.13 5.12
3614 3909 3.408634 GGACGAATTTCCCTTTCTCACA 58.591 45.455 0.00 0.00 0.00 3.58
3615 3910 3.818773 GGACGAATTTCCCTTTCTCACAA 59.181 43.478 0.00 0.00 0.00 3.33
3616 3911 4.083271 GGACGAATTTCCCTTTCTCACAAG 60.083 45.833 0.00 0.00 0.00 3.16
3617 3912 3.821033 ACGAATTTCCCTTTCTCACAAGG 59.179 43.478 0.00 0.00 42.91 3.61
3623 3918 2.575805 CCTTTCTCACAAGGGAAGCT 57.424 50.000 0.00 0.00 39.95 3.74
3624 3919 2.868899 CCTTTCTCACAAGGGAAGCTT 58.131 47.619 0.00 0.00 39.95 3.74
3625 3920 2.816672 CCTTTCTCACAAGGGAAGCTTC 59.183 50.000 18.54 18.54 39.95 3.86
3626 3921 3.497584 CCTTTCTCACAAGGGAAGCTTCT 60.498 47.826 25.05 4.28 39.95 2.85
3627 3922 3.409026 TTCTCACAAGGGAAGCTTCTC 57.591 47.619 25.05 22.33 0.00 2.87
3628 3923 1.625818 TCTCACAAGGGAAGCTTCTCC 59.374 52.381 22.92 21.44 34.41 3.71
3629 3924 1.627834 CTCACAAGGGAAGCTTCTCCT 59.372 52.381 22.92 23.17 35.63 3.69
3630 3925 2.834549 CTCACAAGGGAAGCTTCTCCTA 59.165 50.000 26.94 15.80 35.63 2.94
3631 3926 3.454082 CTCACAAGGGAAGCTTCTCCTAT 59.546 47.826 26.94 18.98 35.63 2.57
3632 3927 4.620723 TCACAAGGGAAGCTTCTCCTATA 58.379 43.478 26.94 15.14 35.63 1.31
3633 3928 5.219739 TCACAAGGGAAGCTTCTCCTATAT 58.780 41.667 26.94 16.95 35.63 0.86
3634 3929 5.305644 TCACAAGGGAAGCTTCTCCTATATC 59.694 44.000 26.94 10.62 35.63 1.63
3635 3930 5.070981 CACAAGGGAAGCTTCTCCTATATCA 59.929 44.000 26.94 0.00 35.63 2.15
3636 3931 5.667626 ACAAGGGAAGCTTCTCCTATATCAA 59.332 40.000 26.94 0.00 35.63 2.57
3637 3932 6.331307 ACAAGGGAAGCTTCTCCTATATCAAT 59.669 38.462 26.94 13.45 35.63 2.57
3638 3933 7.514127 ACAAGGGAAGCTTCTCCTATATCAATA 59.486 37.037 26.94 0.00 35.63 1.90
3639 3934 7.732222 AGGGAAGCTTCTCCTATATCAATAG 57.268 40.000 26.06 0.00 35.63 1.73
3640 3935 7.483018 AGGGAAGCTTCTCCTATATCAATAGA 58.517 38.462 26.06 0.00 37.84 1.98
3641 3936 7.398904 AGGGAAGCTTCTCCTATATCAATAGAC 59.601 40.741 26.06 6.74 37.84 2.59
3642 3937 7.364320 GGGAAGCTTCTCCTATATCAATAGACC 60.364 44.444 25.05 8.34 37.84 3.85
3643 3938 7.179338 GGAAGCTTCTCCTATATCAATAGACCA 59.821 40.741 25.05 0.00 37.84 4.02
3644 3939 8.677870 AAGCTTCTCCTATATCAATAGACCAT 57.322 34.615 0.00 0.00 37.84 3.55
3645 3940 8.076910 AGCTTCTCCTATATCAATAGACCATG 57.923 38.462 0.00 0.00 37.84 3.66
3646 3941 7.125507 AGCTTCTCCTATATCAATAGACCATGG 59.874 40.741 11.19 11.19 37.84 3.66
3647 3942 7.634649 GCTTCTCCTATATCAATAGACCATGGG 60.635 44.444 18.09 0.00 37.84 4.00
3648 3943 6.815880 TCTCCTATATCAATAGACCATGGGT 58.184 40.000 18.09 5.30 37.84 4.51
3649 3944 6.669591 TCTCCTATATCAATAGACCATGGGTG 59.330 42.308 18.09 6.03 37.84 4.61
3650 3945 5.189736 TCCTATATCAATAGACCATGGGTGC 59.810 44.000 18.09 4.98 37.84 5.01
3651 3946 5.190528 CCTATATCAATAGACCATGGGTGCT 59.809 44.000 18.09 12.61 37.84 4.40
3652 3947 6.384015 CCTATATCAATAGACCATGGGTGCTA 59.616 42.308 18.09 14.41 37.84 3.49
3653 3948 4.630644 ATCAATAGACCATGGGTGCTAG 57.369 45.455 18.09 1.78 35.25 3.42
3654 3949 3.384168 TCAATAGACCATGGGTGCTAGT 58.616 45.455 18.09 10.80 35.25 2.57
3655 3950 3.134623 TCAATAGACCATGGGTGCTAGTG 59.865 47.826 22.36 22.36 35.25 2.74
3656 3951 0.830648 TAGACCATGGGTGCTAGTGC 59.169 55.000 18.09 0.00 35.25 4.40
3657 3952 1.452108 GACCATGGGTGCTAGTGCC 60.452 63.158 18.09 0.00 35.25 5.01
3658 3953 2.124151 CCATGGGTGCTAGTGCCC 60.124 66.667 2.85 14.48 45.04 5.36
3662 3957 2.998097 GGGTGCTAGTGCCCATGA 59.002 61.111 15.91 0.00 44.23 3.07
3663 3958 1.153086 GGGTGCTAGTGCCCATGAG 60.153 63.158 15.91 0.00 44.23 2.90
3664 3959 1.604378 GGTGCTAGTGCCCATGAGT 59.396 57.895 0.00 0.00 38.71 3.41
3665 3960 0.035056 GGTGCTAGTGCCCATGAGTT 60.035 55.000 0.00 0.00 38.71 3.01
3666 3961 1.614317 GGTGCTAGTGCCCATGAGTTT 60.614 52.381 0.00 0.00 38.71 2.66
3667 3962 1.740025 GTGCTAGTGCCCATGAGTTTC 59.260 52.381 0.00 0.00 38.71 2.78
3668 3963 1.350684 TGCTAGTGCCCATGAGTTTCA 59.649 47.619 0.00 0.00 38.71 2.69
3669 3964 2.025981 TGCTAGTGCCCATGAGTTTCAT 60.026 45.455 0.00 0.00 36.49 2.57
3670 3965 2.615912 GCTAGTGCCCATGAGTTTCATC 59.384 50.000 0.00 0.00 34.28 2.92
3671 3966 2.885135 AGTGCCCATGAGTTTCATCA 57.115 45.000 0.00 0.00 34.28 3.07
3672 3967 2.440409 AGTGCCCATGAGTTTCATCAC 58.560 47.619 0.00 2.77 34.28 3.06
3673 3968 2.161855 GTGCCCATGAGTTTCATCACA 58.838 47.619 0.00 0.00 34.28 3.58
3674 3969 2.557924 GTGCCCATGAGTTTCATCACAA 59.442 45.455 0.00 0.00 34.28 3.33
3675 3970 2.821378 TGCCCATGAGTTTCATCACAAG 59.179 45.455 0.00 0.00 34.28 3.16
3676 3971 3.084039 GCCCATGAGTTTCATCACAAGA 58.916 45.455 0.00 0.00 34.28 3.02
3677 3972 3.128242 GCCCATGAGTTTCATCACAAGAG 59.872 47.826 0.00 0.00 34.28 2.85
3678 3973 4.582869 CCCATGAGTTTCATCACAAGAGA 58.417 43.478 0.00 0.00 34.28 3.10
3679 3974 5.005740 CCCATGAGTTTCATCACAAGAGAA 58.994 41.667 0.00 0.00 34.28 2.87
3680 3975 5.474532 CCCATGAGTTTCATCACAAGAGAAA 59.525 40.000 0.00 0.00 34.28 2.52
3681 3976 6.016024 CCCATGAGTTTCATCACAAGAGAAAA 60.016 38.462 0.00 0.00 34.28 2.29
3682 3977 7.082602 CCATGAGTTTCATCACAAGAGAAAAG 58.917 38.462 0.00 0.00 34.28 2.27
3683 3978 7.040892 CCATGAGTTTCATCACAAGAGAAAAGA 60.041 37.037 0.00 0.00 34.28 2.52
3684 3979 7.864108 TGAGTTTCATCACAAGAGAAAAGAA 57.136 32.000 0.00 0.00 33.54 2.52
3685 3980 8.279970 TGAGTTTCATCACAAGAGAAAAGAAA 57.720 30.769 0.00 0.00 33.54 2.52
3686 3981 8.739039 TGAGTTTCATCACAAGAGAAAAGAAAA 58.261 29.630 0.00 0.00 33.54 2.29
3687 3982 9.573133 GAGTTTCATCACAAGAGAAAAGAAAAA 57.427 29.630 0.00 0.00 33.54 1.94
3688 3983 9.578439 AGTTTCATCACAAGAGAAAAGAAAAAG 57.422 29.630 0.00 0.00 33.54 2.27
3689 3984 8.811378 GTTTCATCACAAGAGAAAAGAAAAAGG 58.189 33.333 0.00 0.00 33.54 3.11
3702 3997 1.471287 GAAAAAGGATACCGGTGTGGC 59.529 52.381 19.93 0.00 43.94 5.01
3723 4018 3.258123 GCCCTTGCATCCACTTTCTTTAA 59.742 43.478 0.00 0.00 37.47 1.52
3735 4030 7.466804 TCCACTTTCTTTAATACTTGGACCAT 58.533 34.615 0.00 0.00 0.00 3.55
3744 4039 8.704849 TTTAATACTTGGACCATATTCCATGG 57.295 34.615 4.97 4.97 45.42 3.66
3795 4090 4.029809 CCCCCTTTCGGCCGTCTT 62.030 66.667 27.15 0.00 0.00 3.01
3797 4092 1.297364 CCCCTTTCGGCCGTCTTAA 59.703 57.895 27.15 9.29 0.00 1.85
3798 4093 0.107361 CCCCTTTCGGCCGTCTTAAT 60.107 55.000 27.15 0.00 0.00 1.40
3799 4094 1.139455 CCCCTTTCGGCCGTCTTAATA 59.861 52.381 27.15 0.00 0.00 0.98
3800 4095 2.420408 CCCCTTTCGGCCGTCTTAATAA 60.420 50.000 27.15 7.12 0.00 1.40
3801 4096 3.272581 CCCTTTCGGCCGTCTTAATAAA 58.727 45.455 27.15 15.06 0.00 1.40
3802 4097 3.311596 CCCTTTCGGCCGTCTTAATAAAG 59.688 47.826 27.15 23.04 0.00 1.85
3803 4098 4.186159 CCTTTCGGCCGTCTTAATAAAGA 58.814 43.478 27.15 0.00 39.47 2.52
3804 4099 4.814771 CCTTTCGGCCGTCTTAATAAAGAT 59.185 41.667 27.15 0.00 43.50 2.40
3805 4100 5.296035 CCTTTCGGCCGTCTTAATAAAGATT 59.704 40.000 27.15 0.00 43.50 2.40
3806 4101 6.183360 CCTTTCGGCCGTCTTAATAAAGATTT 60.183 38.462 27.15 0.00 43.50 2.17
3807 4102 6.746745 TTCGGCCGTCTTAATAAAGATTTT 57.253 33.333 27.15 0.00 43.50 1.82
3808 4103 6.746745 TCGGCCGTCTTAATAAAGATTTTT 57.253 33.333 27.15 0.00 43.50 1.94
3857 4152 9.005777 TCCAAAATACTACACACTAATTCAACC 57.994 33.333 0.00 0.00 0.00 3.77
3858 4153 7.960738 CCAAAATACTACACACTAATTCAACCG 59.039 37.037 0.00 0.00 0.00 4.44
3859 4154 6.657836 AATACTACACACTAATTCAACCGC 57.342 37.500 0.00 0.00 0.00 5.68
3860 4155 2.991190 ACTACACACTAATTCAACCGCG 59.009 45.455 0.00 0.00 0.00 6.46
3861 4156 1.153353 ACACACTAATTCAACCGCGG 58.847 50.000 26.86 26.86 0.00 6.46
3862 4157 1.153353 CACACTAATTCAACCGCGGT 58.847 50.000 28.70 28.70 0.00 5.68
3863 4158 1.136085 CACACTAATTCAACCGCGGTG 60.136 52.381 34.95 24.92 0.00 4.94
3864 4159 0.446222 CACTAATTCAACCGCGGTGG 59.554 55.000 34.95 31.09 46.41 4.61
3865 4160 0.675522 ACTAATTCAACCGCGGTGGG 60.676 55.000 34.95 26.77 44.64 4.61
3866 4161 1.988834 CTAATTCAACCGCGGTGGGC 61.989 60.000 34.95 0.00 44.64 5.36
3867 4162 2.749706 TAATTCAACCGCGGTGGGCA 62.750 55.000 34.95 19.85 44.64 5.36
3881 4176 3.647367 GGCACCTGCATCCCTCTA 58.353 61.111 0.00 0.00 44.36 2.43
3882 4177 2.149530 GGCACCTGCATCCCTCTAT 58.850 57.895 0.00 0.00 44.36 1.98
3883 4178 0.475906 GGCACCTGCATCCCTCTATT 59.524 55.000 0.00 0.00 44.36 1.73
3884 4179 1.699634 GGCACCTGCATCCCTCTATTA 59.300 52.381 0.00 0.00 44.36 0.98
3885 4180 2.551071 GGCACCTGCATCCCTCTATTAC 60.551 54.545 0.00 0.00 44.36 1.89
3886 4181 2.551071 GCACCTGCATCCCTCTATTACC 60.551 54.545 0.00 0.00 41.59 2.85
3887 4182 2.039084 CACCTGCATCCCTCTATTACCC 59.961 54.545 0.00 0.00 0.00 3.69
3888 4183 2.338809 CCTGCATCCCTCTATTACCCA 58.661 52.381 0.00 0.00 0.00 4.51
3889 4184 2.915604 CCTGCATCCCTCTATTACCCAT 59.084 50.000 0.00 0.00 0.00 4.00
3890 4185 3.054802 CCTGCATCCCTCTATTACCCATC 60.055 52.174 0.00 0.00 0.00 3.51
3891 4186 3.584406 CTGCATCCCTCTATTACCCATCA 59.416 47.826 0.00 0.00 0.00 3.07
3892 4187 4.178339 TGCATCCCTCTATTACCCATCAT 58.822 43.478 0.00 0.00 0.00 2.45
3893 4188 5.349690 TGCATCCCTCTATTACCCATCATA 58.650 41.667 0.00 0.00 0.00 2.15
3894 4189 5.790096 TGCATCCCTCTATTACCCATCATAA 59.210 40.000 0.00 0.00 0.00 1.90
3895 4190 6.448061 TGCATCCCTCTATTACCCATCATAAT 59.552 38.462 0.00 0.00 0.00 1.28
3896 4191 7.036644 TGCATCCCTCTATTACCCATCATAATT 60.037 37.037 0.00 0.00 0.00 1.40
3897 4192 7.836183 GCATCCCTCTATTACCCATCATAATTT 59.164 37.037 0.00 0.00 0.00 1.82
3898 4193 9.401058 CATCCCTCTATTACCCATCATAATTTC 57.599 37.037 0.00 0.00 0.00 2.17
3899 4194 7.928873 TCCCTCTATTACCCATCATAATTTCC 58.071 38.462 0.00 0.00 0.00 3.13
3900 4195 7.519355 TCCCTCTATTACCCATCATAATTTCCA 59.481 37.037 0.00 0.00 0.00 3.53
3901 4196 7.611855 CCCTCTATTACCCATCATAATTTCCAC 59.388 40.741 0.00 0.00 0.00 4.02
3902 4197 8.163408 CCTCTATTACCCATCATAATTTCCACA 58.837 37.037 0.00 0.00 0.00 4.17
3903 4198 9.745018 CTCTATTACCCATCATAATTTCCACAT 57.255 33.333 0.00 0.00 0.00 3.21
3904 4199 9.739276 TCTATTACCCATCATAATTTCCACATC 57.261 33.333 0.00 0.00 0.00 3.06
3905 4200 9.519191 CTATTACCCATCATAATTTCCACATCA 57.481 33.333 0.00 0.00 0.00 3.07
3906 4201 7.822161 TTACCCATCATAATTTCCACATCAG 57.178 36.000 0.00 0.00 0.00 2.90
3907 4202 4.586001 ACCCATCATAATTTCCACATCAGC 59.414 41.667 0.00 0.00 0.00 4.26
3908 4203 4.831155 CCCATCATAATTTCCACATCAGCT 59.169 41.667 0.00 0.00 0.00 4.24
3909 4204 5.303589 CCCATCATAATTTCCACATCAGCTT 59.696 40.000 0.00 0.00 0.00 3.74
3910 4205 6.213677 CCATCATAATTTCCACATCAGCTTG 58.786 40.000 0.00 0.00 0.00 4.01
3911 4206 5.252969 TCATAATTTCCACATCAGCTTGC 57.747 39.130 0.00 0.00 0.00 4.01
3912 4207 4.705991 TCATAATTTCCACATCAGCTTGCA 59.294 37.500 0.00 0.00 0.00 4.08
3913 4208 5.361571 TCATAATTTCCACATCAGCTTGCAT 59.638 36.000 0.00 0.00 0.00 3.96
3914 4209 3.520290 ATTTCCACATCAGCTTGCATG 57.480 42.857 0.00 0.00 0.00 4.06
3915 4210 1.913778 TTCCACATCAGCTTGCATGT 58.086 45.000 1.14 0.00 33.29 3.21
3916 4211 2.785540 TCCACATCAGCTTGCATGTA 57.214 45.000 1.14 0.00 31.78 2.29
3917 4212 3.070476 TCCACATCAGCTTGCATGTAA 57.930 42.857 1.14 0.00 31.78 2.41
3918 4213 3.419943 TCCACATCAGCTTGCATGTAAA 58.580 40.909 0.00 0.00 31.78 2.01
3919 4214 3.825585 TCCACATCAGCTTGCATGTAAAA 59.174 39.130 0.00 0.00 31.78 1.52
3920 4215 4.280425 TCCACATCAGCTTGCATGTAAAAA 59.720 37.500 0.00 0.00 31.78 1.94
3921 4216 5.047164 TCCACATCAGCTTGCATGTAAAAAT 60.047 36.000 0.00 0.00 31.78 1.82
3922 4217 5.640357 CCACATCAGCTTGCATGTAAAAATT 59.360 36.000 0.00 0.00 31.78 1.82
3923 4218 6.148150 CCACATCAGCTTGCATGTAAAAATTT 59.852 34.615 0.00 0.00 31.78 1.82
3924 4219 7.012943 CACATCAGCTTGCATGTAAAAATTTG 58.987 34.615 0.00 0.00 31.78 2.32
3949 4244 4.974989 ACGTTTCCACCCGACGCC 62.975 66.667 0.00 0.00 40.22 5.68
3966 4261 3.061848 CCCGGCCGAAACTTGCAT 61.062 61.111 30.73 0.00 0.00 3.96
3967 4262 2.485122 CCGGCCGAAACTTGCATC 59.515 61.111 30.73 0.00 0.00 3.91
3969 4264 2.387445 CGGCCGAAACTTGCATCGA 61.387 57.895 24.07 0.00 41.43 3.59
3970 4265 1.873165 GGCCGAAACTTGCATCGAA 59.127 52.632 8.94 0.00 41.43 3.71
3978 4273 3.293872 CTTGCATCGAACGCACGCA 62.294 57.895 11.99 1.19 39.59 5.24
3993 4288 3.518003 GCAGGCCTTGCGATCAAT 58.482 55.556 0.00 0.00 44.09 2.57
3995 4290 0.248784 GCAGGCCTTGCGATCAATTC 60.249 55.000 0.00 0.00 44.09 2.17
4008 4303 2.188837 TCAATTCGGATCGTGAGTCG 57.811 50.000 0.00 0.00 41.41 4.18
4010 4305 0.456221 AATTCGGATCGTGAGTCGCT 59.544 50.000 1.58 0.00 39.67 4.93
4019 4314 3.071206 TGAGTCGCTCAGGCCTCC 61.071 66.667 0.00 0.00 35.39 4.30
4020 4315 3.844090 GAGTCGCTCAGGCCTCCC 61.844 72.222 0.00 0.00 34.44 4.30
4027 4322 1.557269 GCTCAGGCCTCCCTCTTTCA 61.557 60.000 0.00 0.00 40.33 2.69
4028 4323 1.211456 CTCAGGCCTCCCTCTTTCAT 58.789 55.000 0.00 0.00 40.33 2.57
4030 4325 0.182299 CAGGCCTCCCTCTTTCATCC 59.818 60.000 0.00 0.00 40.33 3.51
4031 4326 0.253347 AGGCCTCCCTCTTTCATCCA 60.253 55.000 0.00 0.00 36.46 3.41
4032 4327 0.106967 GGCCTCCCTCTTTCATCCAC 60.107 60.000 0.00 0.00 0.00 4.02
4033 4328 0.462759 GCCTCCCTCTTTCATCCACG 60.463 60.000 0.00 0.00 0.00 4.94
4034 4329 1.195115 CCTCCCTCTTTCATCCACGA 58.805 55.000 0.00 0.00 0.00 4.35
4035 4330 1.555075 CCTCCCTCTTTCATCCACGAA 59.445 52.381 0.00 0.00 0.00 3.85
4037 4332 1.278127 TCCCTCTTTCATCCACGAACC 59.722 52.381 0.00 0.00 0.00 3.62
4038 4333 1.359848 CCTCTTTCATCCACGAACCG 58.640 55.000 0.00 0.00 0.00 4.44
4044 4349 1.515081 TCATCCACGAACCGTTTTCC 58.485 50.000 0.00 0.00 38.32 3.13
4045 4350 1.202663 TCATCCACGAACCGTTTTCCA 60.203 47.619 0.00 0.00 38.32 3.53
4047 4352 0.814812 TCCACGAACCGTTTTCCACC 60.815 55.000 0.00 0.00 38.32 4.61
4048 4353 0.816421 CCACGAACCGTTTTCCACCT 60.816 55.000 0.00 0.00 38.32 4.00
4051 4356 0.250166 CGAACCGTTTTCCACCTCCT 60.250 55.000 0.00 0.00 0.00 3.69
4067 4372 4.081917 CACCTCCTCTTTCTTCTACCTCAC 60.082 50.000 0.00 0.00 0.00 3.51
4071 4376 3.506455 CCTCTTTCTTCTACCTCACGACA 59.494 47.826 0.00 0.00 0.00 4.35
4077 4382 0.887836 TCTACCTCACGACACGCACT 60.888 55.000 0.00 0.00 0.00 4.40
4079 4384 0.800631 TACCTCACGACACGCACTAG 59.199 55.000 0.00 0.00 0.00 2.57
4080 4385 1.170919 ACCTCACGACACGCACTAGT 61.171 55.000 0.00 0.00 0.00 2.57
4081 4386 0.039437 CCTCACGACACGCACTAGTT 60.039 55.000 0.00 0.00 0.00 2.24
4092 4403 2.125912 ACTAGTTGCAGCCGCTCG 60.126 61.111 0.00 0.00 39.64 5.03
4105 4416 1.586564 CGCTCGGTTCGTCCATCTC 60.587 63.158 1.14 0.00 35.57 2.75
4107 4418 1.064296 CTCGGTTCGTCCATCTCCG 59.936 63.158 0.00 0.00 42.12 4.63
4108 4419 2.582498 CGGTTCGTCCATCTCCGC 60.582 66.667 0.00 0.00 35.01 5.54
4115 4426 3.838271 TCCATCTCCGCGGCTCAC 61.838 66.667 23.51 0.00 0.00 3.51
4117 4428 2.887568 CATCTCCGCGGCTCACAC 60.888 66.667 23.51 0.00 0.00 3.82
4190 4501 0.388263 GGGAGAAGACGTCGACAACC 60.388 60.000 17.16 14.03 0.00 3.77
4196 4507 4.578898 ACGTCGACAACCAGCGCA 62.579 61.111 17.16 0.00 0.00 6.09
4212 4523 1.534203 GCATCCTCCCTCCCCTTTC 59.466 63.158 0.00 0.00 0.00 2.62
4213 4524 0.990818 GCATCCTCCCTCCCCTTTCT 60.991 60.000 0.00 0.00 0.00 2.52
4214 4525 1.601248 CATCCTCCCTCCCCTTTCTT 58.399 55.000 0.00 0.00 0.00 2.52
4216 4527 0.253207 TCCTCCCTCCCCTTTCTTCC 60.253 60.000 0.00 0.00 0.00 3.46
4221 4532 1.675007 CCTCCCCTTTCTTCCCTCTT 58.325 55.000 0.00 0.00 0.00 2.85
4224 4535 3.455849 CTCCCCTTTCTTCCCTCTTAGT 58.544 50.000 0.00 0.00 0.00 2.24
4228 4539 3.182152 CCTTTCTTCCCTCTTAGTCCCA 58.818 50.000 0.00 0.00 0.00 4.37
4229 4540 3.783082 CCTTTCTTCCCTCTTAGTCCCAT 59.217 47.826 0.00 0.00 0.00 4.00
4230 4541 4.384647 CCTTTCTTCCCTCTTAGTCCCATG 60.385 50.000 0.00 0.00 0.00 3.66
4231 4542 3.491766 TCTTCCCTCTTAGTCCCATGT 57.508 47.619 0.00 0.00 0.00 3.21
4232 4543 3.107601 TCTTCCCTCTTAGTCCCATGTG 58.892 50.000 0.00 0.00 0.00 3.21
4233 4544 2.642171 TCCCTCTTAGTCCCATGTGT 57.358 50.000 0.00 0.00 0.00 3.72
4234 4545 3.769189 TCCCTCTTAGTCCCATGTGTA 57.231 47.619 0.00 0.00 0.00 2.90
4236 4547 2.434702 CCCTCTTAGTCCCATGTGTACC 59.565 54.545 0.00 0.00 0.00 3.34
4237 4548 2.434702 CCTCTTAGTCCCATGTGTACCC 59.565 54.545 0.00 0.00 0.00 3.69
4238 4549 3.375699 CTCTTAGTCCCATGTGTACCCT 58.624 50.000 0.00 0.00 0.00 4.34
4239 4550 3.371965 TCTTAGTCCCATGTGTACCCTC 58.628 50.000 0.00 0.00 0.00 4.30
4241 4552 2.270434 AGTCCCATGTGTACCCTCAT 57.730 50.000 0.00 0.00 0.00 2.90
4242 4553 3.414759 AGTCCCATGTGTACCCTCATA 57.585 47.619 0.00 0.00 0.00 2.15
4243 4554 3.941629 AGTCCCATGTGTACCCTCATAT 58.058 45.455 0.00 0.00 0.00 1.78
4244 4555 4.307259 AGTCCCATGTGTACCCTCATATT 58.693 43.478 0.00 0.00 0.00 1.28
4245 4556 4.726825 AGTCCCATGTGTACCCTCATATTT 59.273 41.667 0.00 0.00 0.00 1.40
4246 4557 5.063880 GTCCCATGTGTACCCTCATATTTC 58.936 45.833 0.00 0.00 0.00 2.17
4247 4558 4.975147 TCCCATGTGTACCCTCATATTTCT 59.025 41.667 0.00 0.00 0.00 2.52
4248 4559 5.065914 CCCATGTGTACCCTCATATTTCTG 58.934 45.833 0.00 0.00 0.00 3.02
4249 4560 4.516698 CCATGTGTACCCTCATATTTCTGC 59.483 45.833 0.00 0.00 0.00 4.26
4250 4561 4.835284 TGTGTACCCTCATATTTCTGCA 57.165 40.909 0.00 0.00 0.00 4.41
4251 4562 4.769688 TGTGTACCCTCATATTTCTGCAG 58.230 43.478 7.63 7.63 0.00 4.41
4252 4563 4.469586 TGTGTACCCTCATATTTCTGCAGA 59.530 41.667 13.74 13.74 0.00 4.26
4253 4564 4.811557 GTGTACCCTCATATTTCTGCAGAC 59.188 45.833 18.03 0.75 0.00 3.51
4254 4565 3.185246 ACCCTCATATTTCTGCAGACG 57.815 47.619 18.03 2.90 0.00 4.18
4255 4566 2.766263 ACCCTCATATTTCTGCAGACGA 59.234 45.455 18.03 8.81 0.00 4.20
4256 4567 3.181471 ACCCTCATATTTCTGCAGACGAG 60.181 47.826 18.03 15.85 0.00 4.18
4257 4568 2.799412 CCTCATATTTCTGCAGACGAGC 59.201 50.000 18.03 0.00 0.00 5.03
4258 4569 3.492309 CCTCATATTTCTGCAGACGAGCT 60.492 47.826 18.03 1.93 34.99 4.09
4266 4577 3.114616 CAGACGAGCTGCAACCGG 61.115 66.667 0.00 0.00 37.90 5.28
4285 4596 0.179205 GCAATCGTCAGAGCTGCAAC 60.179 55.000 1.02 0.00 38.39 4.17
4287 4598 0.035317 AATCGTCAGAGCTGCAACCA 59.965 50.000 1.02 0.00 0.00 3.67
4288 4599 0.390866 ATCGTCAGAGCTGCAACCAG 60.391 55.000 1.02 0.00 42.13 4.00
4305 4616 4.419522 ACCAGCTTTACAAAATGCTACG 57.580 40.909 0.00 0.00 42.46 3.51
4306 4617 3.171277 CCAGCTTTACAAAATGCTACGC 58.829 45.455 0.00 0.00 42.46 4.42
4310 4621 3.665848 GCTTTACAAAATGCTACGCACGA 60.666 43.478 0.00 0.00 43.04 4.35
4311 4622 4.647964 CTTTACAAAATGCTACGCACGAT 58.352 39.130 0.00 0.00 43.04 3.73
4318 4629 5.539582 AAATGCTACGCACGATTTCTTTA 57.460 34.783 0.00 0.00 43.04 1.85
4326 4637 3.181511 CGCACGATTTCTTTATTGCTGGA 60.182 43.478 0.00 0.00 0.00 3.86
4331 4642 5.095490 CGATTTCTTTATTGCTGGAACCAC 58.905 41.667 0.00 0.00 0.00 4.16
4332 4643 4.864704 TTTCTTTATTGCTGGAACCACC 57.135 40.909 0.00 0.00 39.54 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 5.357032 CCTACCCATGTTCTCATAAAACCAC 59.643 44.000 0.00 0.00 32.47 4.16
21 22 5.505780 CCTACCCATGTTCTCATAAAACCA 58.494 41.667 0.00 0.00 32.47 3.67
27 28 3.909995 CCATCCCTACCCATGTTCTCATA 59.090 47.826 0.00 0.00 32.47 2.15
33 34 1.681229 ACACCATCCCTACCCATGTT 58.319 50.000 0.00 0.00 0.00 2.71
35 36 1.699634 CCTACACCATCCCTACCCATG 59.300 57.143 0.00 0.00 0.00 3.66
37 38 0.693092 GCCTACACCATCCCTACCCA 60.693 60.000 0.00 0.00 0.00 4.51
39 40 0.400093 AGGCCTACACCATCCCTACC 60.400 60.000 1.29 0.00 0.00 3.18
42 43 1.694169 CCAGGCCTACACCATCCCT 60.694 63.158 3.98 0.00 0.00 4.20
47 48 3.000819 CCGACCAGGCCTACACCA 61.001 66.667 3.98 0.00 0.00 4.17
64 65 3.343421 GGACACCGTTGCCACGTC 61.343 66.667 9.67 0.36 45.62 4.34
67 68 2.110213 TCTGGACACCGTTGCCAC 59.890 61.111 0.00 0.00 0.00 5.01
73 74 4.338539 GACGCGTCTGGACACCGT 62.339 66.667 31.12 13.39 40.12 4.83
95 96 6.990908 TCATATATGAGCTGATATGGGAGG 57.009 41.667 15.12 0.00 36.88 4.30
109 110 7.984859 ATTCCCATACTCAGCTCATATATGA 57.015 36.000 14.64 14.64 35.16 2.15
111 112 7.052873 GCAATTCCCATACTCAGCTCATATAT 58.947 38.462 0.00 0.00 0.00 0.86
112 113 6.409704 GCAATTCCCATACTCAGCTCATATA 58.590 40.000 0.00 0.00 0.00 0.86
122 123 1.134220 TGACCCGCAATTCCCATACTC 60.134 52.381 0.00 0.00 0.00 2.59
129 130 2.464459 CGAGCTGACCCGCAATTCC 61.464 63.158 0.00 0.00 0.00 3.01
137 274 2.027625 CAAACGTCCGAGCTGACCC 61.028 63.158 0.00 0.00 31.35 4.46
145 282 1.595929 GCAACTCCCAAACGTCCGA 60.596 57.895 0.00 0.00 0.00 4.55
147 284 3.351450 GGCAACTCCCAAACGTCC 58.649 61.111 0.00 0.00 0.00 4.79
159 296 0.603065 GTGACCCAATTGGAGGCAAC 59.397 55.000 26.60 13.77 37.39 4.17
160 297 0.187117 TGTGACCCAATTGGAGGCAA 59.813 50.000 26.60 11.54 37.39 4.52
161 298 0.409092 ATGTGACCCAATTGGAGGCA 59.591 50.000 26.60 20.26 37.39 4.75
162 299 1.560505 AATGTGACCCAATTGGAGGC 58.439 50.000 26.60 17.87 37.39 4.70
163 300 4.622260 AAAAATGTGACCCAATTGGAGG 57.378 40.909 26.60 12.52 37.39 4.30
164 301 5.245977 ACCTAAAAATGTGACCCAATTGGAG 59.754 40.000 26.60 17.47 37.39 3.86
165 302 5.151454 ACCTAAAAATGTGACCCAATTGGA 58.849 37.500 26.60 5.59 37.39 3.53
166 303 5.482163 ACCTAAAAATGTGACCCAATTGG 57.518 39.130 18.21 18.21 41.37 3.16
168 305 6.989759 GTCAAACCTAAAAATGTGACCCAATT 59.010 34.615 0.00 0.00 31.32 2.32
170 307 5.422331 TGTCAAACCTAAAAATGTGACCCAA 59.578 36.000 0.00 0.00 35.59 4.12
172 309 5.523438 TGTCAAACCTAAAAATGTGACCC 57.477 39.130 0.00 0.00 35.59 4.46
175 312 7.254852 GTCACTTGTCAAACCTAAAAATGTGA 58.745 34.615 0.00 0.00 0.00 3.58
176 313 6.475402 GGTCACTTGTCAAACCTAAAAATGTG 59.525 38.462 0.00 0.00 0.00 3.21
177 314 6.153680 TGGTCACTTGTCAAACCTAAAAATGT 59.846 34.615 6.50 0.00 32.82 2.71
178 315 6.568869 TGGTCACTTGTCAAACCTAAAAATG 58.431 36.000 6.50 0.00 32.82 2.32
185 323 2.505819 AGTCTGGTCACTTGTCAAACCT 59.494 45.455 6.50 0.00 32.82 3.50
194 332 1.367840 GCGGTGAGTCTGGTCACTT 59.632 57.895 4.14 0.00 45.34 3.16
213 351 2.343758 CATATCCACCCTCGGCCG 59.656 66.667 22.12 22.12 0.00 6.13
219 357 1.270907 GAGCGATCCATATCCACCCT 58.729 55.000 0.00 0.00 0.00 4.34
220 358 0.108615 CGAGCGATCCATATCCACCC 60.109 60.000 0.00 0.00 0.00 4.61
235 376 4.618513 GAGCATCTACGACCGAGC 57.381 61.111 0.00 0.00 0.00 5.03
262 403 2.386661 ACGATCCACTTTGGTGCTAG 57.613 50.000 0.00 0.00 41.75 3.42
273 414 9.677567 AATTACAATTATTATGCAACGATCCAC 57.322 29.630 0.00 0.00 0.00 4.02
282 423 7.117285 TGCACCCAATTACAATTATTATGCA 57.883 32.000 0.00 0.00 33.56 3.96
283 424 6.146021 GCTGCACCCAATTACAATTATTATGC 59.854 38.462 0.00 0.00 0.00 3.14
284 425 7.436118 AGCTGCACCCAATTACAATTATTATG 58.564 34.615 1.02 0.00 0.00 1.90
293 434 3.054434 AGACATAGCTGCACCCAATTACA 60.054 43.478 1.02 0.00 0.00 2.41
294 435 3.545703 AGACATAGCTGCACCCAATTAC 58.454 45.455 1.02 0.00 0.00 1.89
302 443 2.662006 TGACTGAGACATAGCTGCAC 57.338 50.000 1.02 0.00 0.00 4.57
305 446 4.172505 GTCACTTGACTGAGACATAGCTG 58.827 47.826 0.00 0.00 41.65 4.24
311 452 7.227049 TGTTATATGTCACTTGACTGAGACA 57.773 36.000 10.63 0.00 44.99 3.41
378 519 9.784531 ATATCCGTGAGATTTTACATTGAGATT 57.215 29.630 0.00 0.00 36.33 2.40
381 522 9.698309 AGTATATCCGTGAGATTTTACATTGAG 57.302 33.333 0.00 0.00 36.33 3.02
383 524 8.926710 GGAGTATATCCGTGAGATTTTACATTG 58.073 37.037 0.00 0.00 38.67 2.82
400 541 0.252103 TGGGGCGGAGGGAGTATATC 60.252 60.000 0.00 0.00 0.00 1.63
404 545 0.192566 ATTATGGGGCGGAGGGAGTA 59.807 55.000 0.00 0.00 0.00 2.59
405 546 0.192566 TATTATGGGGCGGAGGGAGT 59.807 55.000 0.00 0.00 0.00 3.85
406 547 1.584724 ATATTATGGGGCGGAGGGAG 58.415 55.000 0.00 0.00 0.00 4.30
407 548 2.953093 TATATTATGGGGCGGAGGGA 57.047 50.000 0.00 0.00 0.00 4.20
408 549 3.112263 TCTTATATTATGGGGCGGAGGG 58.888 50.000 0.00 0.00 0.00 4.30
409 550 3.775316 ACTCTTATATTATGGGGCGGAGG 59.225 47.826 0.00 0.00 0.00 4.30
410 551 4.223032 ACACTCTTATATTATGGGGCGGAG 59.777 45.833 0.00 0.00 0.00 4.63
411 552 4.164981 ACACTCTTATATTATGGGGCGGA 58.835 43.478 0.00 0.00 0.00 5.54
412 553 4.553330 ACACTCTTATATTATGGGGCGG 57.447 45.455 0.00 0.00 0.00 6.13
413 554 6.877611 AAAACACTCTTATATTATGGGGCG 57.122 37.500 0.00 0.00 0.00 6.13
434 575 8.891671 AGTCTCGGTTAATGTTAGTGTAAAAA 57.108 30.769 0.00 0.00 0.00 1.94
435 576 8.891671 AAGTCTCGGTTAATGTTAGTGTAAAA 57.108 30.769 0.00 0.00 0.00 1.52
436 577 8.891671 AAAGTCTCGGTTAATGTTAGTGTAAA 57.108 30.769 0.00 0.00 0.00 2.01
437 578 8.891671 AAAAGTCTCGGTTAATGTTAGTGTAA 57.108 30.769 0.00 0.00 0.00 2.41
438 579 9.979578 TTAAAAGTCTCGGTTAATGTTAGTGTA 57.020 29.630 0.00 0.00 0.00 2.90
439 580 8.768019 GTTAAAAGTCTCGGTTAATGTTAGTGT 58.232 33.333 0.00 0.00 0.00 3.55
440 581 7.948363 CGTTAAAAGTCTCGGTTAATGTTAGTG 59.052 37.037 0.00 0.00 0.00 2.74
441 582 7.867403 TCGTTAAAAGTCTCGGTTAATGTTAGT 59.133 33.333 0.00 0.00 0.00 2.24
442 583 8.231304 TCGTTAAAAGTCTCGGTTAATGTTAG 57.769 34.615 0.00 0.00 0.00 2.34
461 602 7.094890 ACTCTCGATCAACTAAGACTTCGTTAA 60.095 37.037 4.91 0.00 0.00 2.01
462 603 6.370994 ACTCTCGATCAACTAAGACTTCGTTA 59.629 38.462 4.91 0.00 0.00 3.18
463 604 5.181622 ACTCTCGATCAACTAAGACTTCGTT 59.818 40.000 0.00 0.00 0.00 3.85
464 605 4.696402 ACTCTCGATCAACTAAGACTTCGT 59.304 41.667 0.00 0.00 0.00 3.85
465 606 5.224562 ACTCTCGATCAACTAAGACTTCG 57.775 43.478 0.00 0.00 0.00 3.79
466 607 6.689669 GCTAACTCTCGATCAACTAAGACTTC 59.310 42.308 0.00 0.00 0.00 3.01
467 608 6.151312 TGCTAACTCTCGATCAACTAAGACTT 59.849 38.462 0.00 0.00 0.00 3.01
468 609 5.648526 TGCTAACTCTCGATCAACTAAGACT 59.351 40.000 0.00 0.00 0.00 3.24
469 610 5.881447 TGCTAACTCTCGATCAACTAAGAC 58.119 41.667 0.00 0.00 0.00 3.01
473 614 5.648526 AGTCTTGCTAACTCTCGATCAACTA 59.351 40.000 0.00 0.00 0.00 2.24
480 621 4.585955 AAACAGTCTTGCTAACTCTCGA 57.414 40.909 0.00 0.00 0.00 4.04
481 622 5.463724 AGAAAAACAGTCTTGCTAACTCTCG 59.536 40.000 0.00 0.00 0.00 4.04
482 623 6.852858 AGAAAAACAGTCTTGCTAACTCTC 57.147 37.500 0.00 0.00 0.00 3.20
494 635 4.879598 TCTCTCCCGTAAGAAAAACAGTC 58.120 43.478 0.00 0.00 43.02 3.51
498 639 5.416947 TGCTATCTCTCCCGTAAGAAAAAC 58.583 41.667 0.00 0.00 43.02 2.43
504 645 3.886505 AGTCTTGCTATCTCTCCCGTAAG 59.113 47.826 0.00 0.00 0.00 2.34
506 647 3.215151 CAGTCTTGCTATCTCTCCCGTA 58.785 50.000 0.00 0.00 0.00 4.02
507 648 2.028130 CAGTCTTGCTATCTCTCCCGT 58.972 52.381 0.00 0.00 0.00 5.28
508 649 2.028130 ACAGTCTTGCTATCTCTCCCG 58.972 52.381 0.00 0.00 0.00 5.14
509 650 4.647399 ACTAACAGTCTTGCTATCTCTCCC 59.353 45.833 0.00 0.00 0.00 4.30
510 651 5.845391 ACTAACAGTCTTGCTATCTCTCC 57.155 43.478 0.00 0.00 0.00 3.71
603 759 4.436998 GGACGCACCGAGGTCAGG 62.437 72.222 0.00 0.00 34.87 3.86
606 762 4.736896 GGTGGACGCACCGAGGTC 62.737 72.222 0.00 0.00 42.61 3.85
615 771 2.280797 TTGAGCACAGGTGGACGC 60.281 61.111 1.10 0.00 0.00 5.19
657 813 1.203063 ACTGGTGCTGGACTCTGTAGA 60.203 52.381 0.00 0.00 0.00 2.59
670 829 2.881352 GTCGCTCGCTACTGGTGC 60.881 66.667 0.00 0.00 0.00 5.01
683 842 3.795488 GCCTTTTATAATGCAAGGGTCGC 60.795 47.826 13.79 0.00 38.04 5.19
685 844 3.069586 GGGCCTTTTATAATGCAAGGGTC 59.930 47.826 13.79 0.00 38.04 4.46
686 845 3.038280 GGGCCTTTTATAATGCAAGGGT 58.962 45.455 13.79 0.00 38.04 4.34
687 846 2.368548 GGGGCCTTTTATAATGCAAGGG 59.631 50.000 13.79 0.00 38.04 3.95
688 847 2.035832 CGGGGCCTTTTATAATGCAAGG 59.964 50.000 0.84 9.28 40.24 3.61
689 848 2.693074 ACGGGGCCTTTTATAATGCAAG 59.307 45.455 0.84 0.00 0.00 4.01
690 849 2.741145 ACGGGGCCTTTTATAATGCAA 58.259 42.857 0.84 0.00 0.00 4.08
737 903 1.301716 TGGACTCTGTTTGCTCGGC 60.302 57.895 0.00 0.00 0.00 5.54
738 904 1.284982 CGTGGACTCTGTTTGCTCGG 61.285 60.000 0.00 0.00 0.00 4.63
805 1012 1.614317 GGGGTTGGAGATCTTGTGGTG 60.614 57.143 0.00 0.00 0.00 4.17
810 1024 2.659428 GGATTGGGGTTGGAGATCTTG 58.341 52.381 0.00 0.00 0.00 3.02
822 1036 2.507944 CTCAGCTCCGGATTGGGG 59.492 66.667 3.57 0.00 43.42 4.96
823 1037 2.203126 GCTCAGCTCCGGATTGGG 60.203 66.667 3.57 8.23 38.76 4.12
824 1038 2.203126 GGCTCAGCTCCGGATTGG 60.203 66.667 3.57 0.00 40.09 3.16
825 1039 2.587194 CGGCTCAGCTCCGGATTG 60.587 66.667 3.57 7.24 42.99 2.67
826 1040 4.537433 GCGGCTCAGCTCCGGATT 62.537 66.667 3.57 0.00 46.51 3.01
873 1087 2.596851 CCAGAGGTGTGGAGGGTGG 61.597 68.421 0.00 0.00 40.44 4.61
920 1141 1.304134 GGTGGTGGTGGGATCCAAC 60.304 63.158 15.23 13.23 44.71 3.77
945 1166 0.105039 GAGGGGATGACGATGGTGAC 59.895 60.000 0.00 0.00 0.00 3.67
960 1181 2.046285 GGGTTGGTCAATGCGAGGG 61.046 63.158 0.00 0.00 0.00 4.30
1888 2145 2.874648 TAGAAGTCGGCGGCGTAGGA 62.875 60.000 31.06 9.09 0.00 2.94
1989 2252 2.799371 CTCGCGGTGTACTCTCCC 59.201 66.667 6.13 0.00 0.00 4.30
2349 2612 2.202756 GTCGACGGGATGAGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
2748 3011 0.032952 TGTCCAGGTTGTACGCTGTC 59.967 55.000 0.00 0.00 0.00 3.51
2751 3014 0.756903 AGTTGTCCAGGTTGTACGCT 59.243 50.000 0.00 0.00 0.00 5.07
2835 3098 2.281484 CTGTTGGGGTCCACGTGG 60.281 66.667 29.26 29.26 30.78 4.94
2967 3230 1.807573 CTTCTTCGAGCAGTCGGCC 60.808 63.158 0.00 0.00 46.80 6.13
3093 3356 2.578981 GCCTCGTAGACCGCGTTC 60.579 66.667 4.92 0.00 36.19 3.95
3238 3501 0.600057 GACCCGAACGAGTACTTGGT 59.400 55.000 14.75 7.85 0.00 3.67
3349 3612 0.613260 GTGACACCAGCATCCCTACA 59.387 55.000 0.00 0.00 0.00 2.74
3373 3636 1.154282 GGCGCGCTCAAAGTAAACC 60.154 57.895 32.29 5.31 0.00 3.27
3381 3651 2.358615 ATTCACAGGCGCGCTCAA 60.359 55.556 32.29 16.12 0.00 3.02
3384 3654 0.953471 TAAACATTCACAGGCGCGCT 60.953 50.000 32.29 14.46 0.00 5.92
3454 3738 3.065371 CCGAGAATAAACAACATCCAGCC 59.935 47.826 0.00 0.00 0.00 4.85
3458 3742 3.438781 TGCACCGAGAATAAACAACATCC 59.561 43.478 0.00 0.00 0.00 3.51
3473 3757 1.335810 GTATATCGTCCTGTGCACCGA 59.664 52.381 15.69 16.09 0.00 4.69
3481 3776 4.022329 TGGCATGTACTGTATATCGTCCTG 60.022 45.833 0.00 0.00 0.00 3.86
3536 3831 2.187946 CGCTCCCTTGCCACTAGG 59.812 66.667 0.00 0.00 38.23 3.02
3537 3832 2.512515 GCGCTCCCTTGCCACTAG 60.513 66.667 0.00 0.00 0.00 2.57
3538 3833 3.315142 CTGCGCTCCCTTGCCACTA 62.315 63.158 9.73 0.00 0.00 2.74
3539 3834 4.711949 CTGCGCTCCCTTGCCACT 62.712 66.667 9.73 0.00 0.00 4.00
3553 3848 4.687215 TGCTGGAGACGCCACTGC 62.687 66.667 0.00 0.00 43.33 4.40
3554 3849 2.031012 TTGCTGGAGACGCCACTG 59.969 61.111 0.00 0.00 43.33 3.66
3555 3850 2.031163 GTTGCTGGAGACGCCACT 59.969 61.111 0.00 0.00 43.33 4.00
3556 3851 3.050275 GGTTGCTGGAGACGCCAC 61.050 66.667 0.00 0.00 43.33 5.01
3557 3852 3.535629 CTGGTTGCTGGAGACGCCA 62.536 63.158 0.00 0.00 46.96 5.69
3558 3853 2.743928 CTGGTTGCTGGAGACGCC 60.744 66.667 0.00 0.00 37.10 5.68
3559 3854 2.743928 CCTGGTTGCTGGAGACGC 60.744 66.667 0.00 0.00 0.00 5.19
3560 3855 2.046892 CCCTGGTTGCTGGAGACG 60.047 66.667 0.00 0.00 0.00 4.18
3561 3856 0.606673 GAACCCTGGTTGCTGGAGAC 60.607 60.000 6.24 0.00 38.60 3.36
3562 3857 1.761174 GAACCCTGGTTGCTGGAGA 59.239 57.895 6.24 0.00 38.60 3.71
3563 3858 1.672356 CGAACCCTGGTTGCTGGAG 60.672 63.158 6.24 0.00 38.60 3.86
3564 3859 2.111999 CTCGAACCCTGGTTGCTGGA 62.112 60.000 6.24 0.00 38.60 3.86
3565 3860 1.672356 CTCGAACCCTGGTTGCTGG 60.672 63.158 6.24 0.00 38.60 4.85
3566 3861 2.328099 GCTCGAACCCTGGTTGCTG 61.328 63.158 6.24 0.00 38.60 4.41
3567 3862 2.032681 GCTCGAACCCTGGTTGCT 59.967 61.111 6.24 0.00 38.60 3.91
3568 3863 3.056328 GGCTCGAACCCTGGTTGC 61.056 66.667 6.24 3.86 38.60 4.17
3569 3864 1.966451 GTGGCTCGAACCCTGGTTG 60.966 63.158 6.24 0.00 38.60 3.77
3570 3865 2.430367 GTGGCTCGAACCCTGGTT 59.570 61.111 1.61 0.07 41.54 3.67
3571 3866 4.003788 CGTGGCTCGAACCCTGGT 62.004 66.667 2.21 0.00 42.86 4.00
3572 3867 3.934391 GACGTGGCTCGAACCCTGG 62.934 68.421 16.57 0.00 42.86 4.45
3573 3868 2.432628 GACGTGGCTCGAACCCTG 60.433 66.667 16.57 0.00 42.86 4.45
3574 3869 4.052229 CGACGTGGCTCGAACCCT 62.052 66.667 16.57 0.00 42.86 4.34
3593 3888 3.408634 TGTGAGAAAGGGAAATTCGTCC 58.591 45.455 0.00 0.00 36.90 4.79
3594 3889 4.083271 CCTTGTGAGAAAGGGAAATTCGTC 60.083 45.833 0.00 0.00 42.68 4.20
3595 3890 3.821033 CCTTGTGAGAAAGGGAAATTCGT 59.179 43.478 0.00 0.00 42.68 3.85
3596 3891 4.425577 CCTTGTGAGAAAGGGAAATTCG 57.574 45.455 0.00 0.00 42.68 3.34
3604 3899 2.575805 AGCTTCCCTTGTGAGAAAGG 57.424 50.000 0.00 0.00 45.48 3.11
3605 3900 3.749226 AGAAGCTTCCCTTGTGAGAAAG 58.251 45.455 22.81 0.00 32.78 2.62
3606 3901 3.496870 GGAGAAGCTTCCCTTGTGAGAAA 60.497 47.826 22.81 0.00 32.78 2.52
3607 3902 2.039084 GGAGAAGCTTCCCTTGTGAGAA 59.961 50.000 22.81 0.00 32.78 2.87
3608 3903 1.625818 GGAGAAGCTTCCCTTGTGAGA 59.374 52.381 22.81 0.00 32.78 3.27
3609 3904 1.627834 AGGAGAAGCTTCCCTTGTGAG 59.372 52.381 22.81 0.00 38.02 3.51
3610 3905 1.734655 AGGAGAAGCTTCCCTTGTGA 58.265 50.000 22.81 0.00 38.02 3.58
3611 3906 3.922171 ATAGGAGAAGCTTCCCTTGTG 57.078 47.619 29.78 0.00 38.02 3.33
3612 3907 5.219739 TGATATAGGAGAAGCTTCCCTTGT 58.780 41.667 29.78 22.99 38.02 3.16
3613 3908 5.815233 TGATATAGGAGAAGCTTCCCTTG 57.185 43.478 29.78 0.00 38.02 3.61
3614 3909 7.958583 TCTATTGATATAGGAGAAGCTTCCCTT 59.041 37.037 29.78 17.43 38.02 3.95
3615 3910 7.398904 GTCTATTGATATAGGAGAAGCTTCCCT 59.601 40.741 28.46 28.46 38.02 4.20
3616 3911 7.364320 GGTCTATTGATATAGGAGAAGCTTCCC 60.364 44.444 22.81 21.40 38.02 3.97
3617 3912 7.179338 TGGTCTATTGATATAGGAGAAGCTTCC 59.821 40.741 22.81 9.76 35.45 3.46
3618 3913 8.128322 TGGTCTATTGATATAGGAGAAGCTTC 57.872 38.462 19.11 19.11 35.45 3.86
3619 3914 8.538701 CATGGTCTATTGATATAGGAGAAGCTT 58.461 37.037 0.00 0.00 35.45 3.74
3620 3915 7.125507 CCATGGTCTATTGATATAGGAGAAGCT 59.874 40.741 2.57 0.00 35.45 3.74
3621 3916 7.271511 CCATGGTCTATTGATATAGGAGAAGC 58.728 42.308 2.57 0.00 35.45 3.86
3622 3917 7.401493 ACCCATGGTCTATTGATATAGGAGAAG 59.599 40.741 11.73 0.00 35.45 2.85
3623 3918 7.180946 CACCCATGGTCTATTGATATAGGAGAA 59.819 40.741 11.73 0.00 35.45 2.87
3624 3919 6.669591 CACCCATGGTCTATTGATATAGGAGA 59.330 42.308 11.73 0.00 35.45 3.71
3625 3920 6.631314 GCACCCATGGTCTATTGATATAGGAG 60.631 46.154 11.73 0.00 35.45 3.69
3626 3921 5.189736 GCACCCATGGTCTATTGATATAGGA 59.810 44.000 11.73 0.00 35.45 2.94
3627 3922 5.190528 AGCACCCATGGTCTATTGATATAGG 59.809 44.000 11.73 0.00 35.45 2.57
3628 3923 6.305272 AGCACCCATGGTCTATTGATATAG 57.695 41.667 11.73 0.00 31.02 1.31
3629 3924 6.959954 ACTAGCACCCATGGTCTATTGATATA 59.040 38.462 11.73 0.00 37.77 0.86
3630 3925 5.787494 ACTAGCACCCATGGTCTATTGATAT 59.213 40.000 11.73 0.00 37.77 1.63
3631 3926 5.012046 CACTAGCACCCATGGTCTATTGATA 59.988 44.000 11.73 2.13 37.77 2.15
3632 3927 3.976654 ACTAGCACCCATGGTCTATTGAT 59.023 43.478 11.73 0.98 37.77 2.57
3633 3928 3.134623 CACTAGCACCCATGGTCTATTGA 59.865 47.826 11.73 0.00 37.77 2.57
3634 3929 3.470709 CACTAGCACCCATGGTCTATTG 58.529 50.000 11.73 9.36 37.77 1.90
3635 3930 2.158755 GCACTAGCACCCATGGTCTATT 60.159 50.000 11.73 0.94 41.58 1.73
3636 3931 1.417890 GCACTAGCACCCATGGTCTAT 59.582 52.381 11.73 0.00 41.58 1.98
3637 3932 0.830648 GCACTAGCACCCATGGTCTA 59.169 55.000 11.73 8.06 41.58 2.59
3638 3933 1.604378 GCACTAGCACCCATGGTCT 59.396 57.895 11.73 7.29 41.58 3.85
3639 3934 1.452108 GGCACTAGCACCCATGGTC 60.452 63.158 11.73 0.00 44.61 4.02
3640 3935 2.677228 GGCACTAGCACCCATGGT 59.323 61.111 11.73 0.00 44.61 3.55
3641 3936 2.124151 GGGCACTAGCACCCATGG 60.124 66.667 14.48 4.14 46.22 3.66
3645 3940 1.153086 CTCATGGGCACTAGCACCC 60.153 63.158 12.83 12.83 46.13 4.61
3646 3941 0.035056 AACTCATGGGCACTAGCACC 60.035 55.000 0.00 0.00 46.13 5.01
3648 3943 1.350684 TGAAACTCATGGGCACTAGCA 59.649 47.619 0.00 0.00 44.61 3.49
3649 3944 2.113860 TGAAACTCATGGGCACTAGC 57.886 50.000 0.00 0.00 41.10 3.42
3650 3945 3.624861 GTGATGAAACTCATGGGCACTAG 59.375 47.826 0.00 0.00 37.20 2.57
3651 3946 3.008923 TGTGATGAAACTCATGGGCACTA 59.991 43.478 0.00 0.00 37.20 2.74
3652 3947 2.224843 TGTGATGAAACTCATGGGCACT 60.225 45.455 0.00 0.00 37.20 4.40
3653 3948 2.161855 TGTGATGAAACTCATGGGCAC 58.838 47.619 0.00 0.00 37.20 5.01
3654 3949 2.583024 TGTGATGAAACTCATGGGCA 57.417 45.000 0.00 0.00 37.20 5.36
3655 3950 3.084039 TCTTGTGATGAAACTCATGGGC 58.916 45.455 0.00 0.00 37.20 5.36
3656 3951 4.582869 TCTCTTGTGATGAAACTCATGGG 58.417 43.478 0.00 0.00 37.20 4.00
3657 3952 6.564709 TTTCTCTTGTGATGAAACTCATGG 57.435 37.500 0.00 0.00 37.20 3.66
3658 3953 7.868775 TCTTTTCTCTTGTGATGAAACTCATG 58.131 34.615 0.00 0.00 37.20 3.07
3659 3954 8.455903 TTCTTTTCTCTTGTGATGAAACTCAT 57.544 30.769 0.00 0.00 40.34 2.90
3660 3955 7.864108 TTCTTTTCTCTTGTGATGAAACTCA 57.136 32.000 0.00 0.00 30.66 3.41
3661 3956 9.573133 TTTTTCTTTTCTCTTGTGATGAAACTC 57.427 29.630 0.00 0.00 30.66 3.01
3662 3957 9.578439 CTTTTTCTTTTCTCTTGTGATGAAACT 57.422 29.630 0.00 0.00 30.66 2.66
3663 3958 8.811378 CCTTTTTCTTTTCTCTTGTGATGAAAC 58.189 33.333 0.00 0.00 30.66 2.78
3664 3959 8.748412 TCCTTTTTCTTTTCTCTTGTGATGAAA 58.252 29.630 0.00 0.00 0.00 2.69
3665 3960 8.292444 TCCTTTTTCTTTTCTCTTGTGATGAA 57.708 30.769 0.00 0.00 0.00 2.57
3666 3961 7.880160 TCCTTTTTCTTTTCTCTTGTGATGA 57.120 32.000 0.00 0.00 0.00 2.92
3667 3962 9.617975 GTATCCTTTTTCTTTTCTCTTGTGATG 57.382 33.333 0.00 0.00 0.00 3.07
3668 3963 8.797438 GGTATCCTTTTTCTTTTCTCTTGTGAT 58.203 33.333 0.00 0.00 0.00 3.06
3669 3964 7.041372 CGGTATCCTTTTTCTTTTCTCTTGTGA 60.041 37.037 0.00 0.00 0.00 3.58
3670 3965 7.078228 CGGTATCCTTTTTCTTTTCTCTTGTG 58.922 38.462 0.00 0.00 0.00 3.33
3671 3966 6.206829 CCGGTATCCTTTTTCTTTTCTCTTGT 59.793 38.462 0.00 0.00 0.00 3.16
3672 3967 6.206829 ACCGGTATCCTTTTTCTTTTCTCTTG 59.793 38.462 4.49 0.00 0.00 3.02
3673 3968 6.206829 CACCGGTATCCTTTTTCTTTTCTCTT 59.793 38.462 6.87 0.00 0.00 2.85
3674 3969 5.705905 CACCGGTATCCTTTTTCTTTTCTCT 59.294 40.000 6.87 0.00 0.00 3.10
3675 3970 5.472478 ACACCGGTATCCTTTTTCTTTTCTC 59.528 40.000 6.87 0.00 0.00 2.87
3676 3971 5.240844 CACACCGGTATCCTTTTTCTTTTCT 59.759 40.000 6.87 0.00 0.00 2.52
3677 3972 5.458015 CACACCGGTATCCTTTTTCTTTTC 58.542 41.667 6.87 0.00 0.00 2.29
3678 3973 4.279922 CCACACCGGTATCCTTTTTCTTTT 59.720 41.667 6.87 0.00 0.00 2.27
3679 3974 3.824443 CCACACCGGTATCCTTTTTCTTT 59.176 43.478 6.87 0.00 0.00 2.52
3680 3975 3.418047 CCACACCGGTATCCTTTTTCTT 58.582 45.455 6.87 0.00 0.00 2.52
3681 3976 2.878526 GCCACACCGGTATCCTTTTTCT 60.879 50.000 6.87 0.00 36.97 2.52
3682 3977 1.471287 GCCACACCGGTATCCTTTTTC 59.529 52.381 6.87 0.00 36.97 2.29
3683 3978 1.541379 GCCACACCGGTATCCTTTTT 58.459 50.000 6.87 0.00 36.97 1.94
3684 3979 0.323087 GGCCACACCGGTATCCTTTT 60.323 55.000 6.87 0.00 36.97 2.27
3685 3980 1.301954 GGCCACACCGGTATCCTTT 59.698 57.895 6.87 0.00 36.97 3.11
3686 3981 2.676265 GGGCCACACCGGTATCCTT 61.676 63.158 6.87 0.00 40.62 3.36
3687 3982 3.087906 GGGCCACACCGGTATCCT 61.088 66.667 6.87 0.00 40.62 3.24
3688 3983 2.676265 AAGGGCCACACCGGTATCC 61.676 63.158 6.87 5.87 40.62 2.59
3689 3984 1.451387 CAAGGGCCACACCGGTATC 60.451 63.158 6.87 0.00 40.62 2.24
3702 3997 5.665916 ATTAAAGAAAGTGGATGCAAGGG 57.334 39.130 0.00 0.00 0.00 3.95
3735 4030 6.388689 AGTTCATAACTACCCACCATGGAATA 59.611 38.462 21.47 3.88 39.00 1.75
3739 4034 4.503714 AGTTCATAACTACCCACCATGG 57.496 45.455 11.19 11.19 40.69 3.66
3744 4039 5.106830 CGGAAACAAGTTCATAACTACCCAC 60.107 44.000 0.00 0.00 41.91 4.61
3745 4040 4.998672 CGGAAACAAGTTCATAACTACCCA 59.001 41.667 0.00 0.00 41.91 4.51
3751 4046 5.296813 AGCATCGGAAACAAGTTCATAAC 57.703 39.130 0.00 0.00 38.06 1.89
3782 4077 5.986004 ATCTTTATTAAGACGGCCGAAAG 57.014 39.130 35.90 26.73 42.91 2.62
3785 4080 6.746745 AAAAATCTTTATTAAGACGGCCGA 57.253 33.333 35.90 9.64 42.91 5.54
3831 4126 9.005777 GGTTGAATTAGTGTGTAGTATTTTGGA 57.994 33.333 0.00 0.00 0.00 3.53
3832 4127 7.960738 CGGTTGAATTAGTGTGTAGTATTTTGG 59.039 37.037 0.00 0.00 0.00 3.28
3833 4128 7.480542 GCGGTTGAATTAGTGTGTAGTATTTTG 59.519 37.037 0.00 0.00 0.00 2.44
3834 4129 7.524065 GCGGTTGAATTAGTGTGTAGTATTTT 58.476 34.615 0.00 0.00 0.00 1.82
3835 4130 6.183360 CGCGGTTGAATTAGTGTGTAGTATTT 60.183 38.462 0.00 0.00 0.00 1.40
3836 4131 5.290158 CGCGGTTGAATTAGTGTGTAGTATT 59.710 40.000 0.00 0.00 0.00 1.89
3837 4132 4.802039 CGCGGTTGAATTAGTGTGTAGTAT 59.198 41.667 0.00 0.00 0.00 2.12
3838 4133 4.168014 CGCGGTTGAATTAGTGTGTAGTA 58.832 43.478 0.00 0.00 0.00 1.82
3839 4134 2.991190 CGCGGTTGAATTAGTGTGTAGT 59.009 45.455 0.00 0.00 0.00 2.73
3840 4135 2.347452 CCGCGGTTGAATTAGTGTGTAG 59.653 50.000 19.50 0.00 0.00 2.74
3841 4136 2.288948 ACCGCGGTTGAATTAGTGTGTA 60.289 45.455 28.70 0.00 0.00 2.90
3842 4137 1.153353 CCGCGGTTGAATTAGTGTGT 58.847 50.000 19.50 0.00 0.00 3.72
3843 4138 1.136085 CACCGCGGTTGAATTAGTGTG 60.136 52.381 32.11 9.06 0.00 3.82
3844 4139 1.153353 CACCGCGGTTGAATTAGTGT 58.847 50.000 32.11 0.00 0.00 3.55
3845 4140 0.446222 CCACCGCGGTTGAATTAGTG 59.554 55.000 32.11 14.23 0.00 2.74
3846 4141 0.675522 CCCACCGCGGTTGAATTAGT 60.676 55.000 32.11 0.00 0.00 2.24
3847 4142 1.988834 GCCCACCGCGGTTGAATTAG 61.989 60.000 32.11 15.83 0.00 1.73
3848 4143 2.041686 GCCCACCGCGGTTGAATTA 61.042 57.895 32.11 0.00 0.00 1.40
3849 4144 3.370231 GCCCACCGCGGTTGAATT 61.370 61.111 32.11 1.81 0.00 2.17
3850 4145 4.652131 TGCCCACCGCGGTTGAAT 62.652 61.111 32.11 2.79 42.08 2.57
3861 4156 4.052518 AGGGATGCAGGTGCCCAC 62.053 66.667 16.24 0.00 44.55 4.61
3862 4157 2.838436 TAGAGGGATGCAGGTGCCCA 62.838 60.000 16.24 0.00 44.55 5.36
3863 4158 1.422161 ATAGAGGGATGCAGGTGCCC 61.422 60.000 8.28 8.28 42.37 5.36
3864 4159 0.475906 AATAGAGGGATGCAGGTGCC 59.524 55.000 0.00 0.00 41.18 5.01
3865 4160 2.551071 GGTAATAGAGGGATGCAGGTGC 60.551 54.545 0.00 0.00 42.50 5.01
3866 4161 2.039084 GGGTAATAGAGGGATGCAGGTG 59.961 54.545 0.00 0.00 0.00 4.00
3867 4162 2.339769 GGGTAATAGAGGGATGCAGGT 58.660 52.381 0.00 0.00 0.00 4.00
3868 4163 2.338809 TGGGTAATAGAGGGATGCAGG 58.661 52.381 0.00 0.00 0.00 4.85
3869 4164 3.584406 TGATGGGTAATAGAGGGATGCAG 59.416 47.826 0.00 0.00 0.00 4.41
3870 4165 3.597182 TGATGGGTAATAGAGGGATGCA 58.403 45.455 0.00 0.00 0.00 3.96
3871 4166 4.851639 ATGATGGGTAATAGAGGGATGC 57.148 45.455 0.00 0.00 0.00 3.91
3872 4167 9.401058 GAAATTATGATGGGTAATAGAGGGATG 57.599 37.037 0.00 0.00 0.00 3.51
3873 4168 8.560903 GGAAATTATGATGGGTAATAGAGGGAT 58.439 37.037 0.00 0.00 0.00 3.85
3874 4169 7.519355 TGGAAATTATGATGGGTAATAGAGGGA 59.481 37.037 0.00 0.00 0.00 4.20
3875 4170 7.611855 GTGGAAATTATGATGGGTAATAGAGGG 59.388 40.741 0.00 0.00 0.00 4.30
3876 4171 8.163408 TGTGGAAATTATGATGGGTAATAGAGG 58.837 37.037 0.00 0.00 0.00 3.69
3877 4172 9.745018 ATGTGGAAATTATGATGGGTAATAGAG 57.255 33.333 0.00 0.00 0.00 2.43
3878 4173 9.739276 GATGTGGAAATTATGATGGGTAATAGA 57.261 33.333 0.00 0.00 0.00 1.98
3879 4174 9.519191 TGATGTGGAAATTATGATGGGTAATAG 57.481 33.333 0.00 0.00 0.00 1.73
3880 4175 9.519191 CTGATGTGGAAATTATGATGGGTAATA 57.481 33.333 0.00 0.00 0.00 0.98
3881 4176 7.039504 GCTGATGTGGAAATTATGATGGGTAAT 60.040 37.037 0.00 0.00 0.00 1.89
3882 4177 6.265196 GCTGATGTGGAAATTATGATGGGTAA 59.735 38.462 0.00 0.00 0.00 2.85
3883 4178 5.769662 GCTGATGTGGAAATTATGATGGGTA 59.230 40.000 0.00 0.00 0.00 3.69
3884 4179 4.586001 GCTGATGTGGAAATTATGATGGGT 59.414 41.667 0.00 0.00 0.00 4.51
3885 4180 4.831155 AGCTGATGTGGAAATTATGATGGG 59.169 41.667 0.00 0.00 0.00 4.00
3886 4181 6.213677 CAAGCTGATGTGGAAATTATGATGG 58.786 40.000 0.00 0.00 0.00 3.51
3887 4182 5.690409 GCAAGCTGATGTGGAAATTATGATG 59.310 40.000 0.00 0.00 0.00 3.07
3888 4183 5.361571 TGCAAGCTGATGTGGAAATTATGAT 59.638 36.000 0.00 0.00 0.00 2.45
3889 4184 4.705991 TGCAAGCTGATGTGGAAATTATGA 59.294 37.500 0.00 0.00 0.00 2.15
3890 4185 5.001237 TGCAAGCTGATGTGGAAATTATG 57.999 39.130 0.00 0.00 0.00 1.90
3891 4186 5.128171 ACATGCAAGCTGATGTGGAAATTAT 59.872 36.000 5.67 0.00 31.47 1.28
3892 4187 4.463539 ACATGCAAGCTGATGTGGAAATTA 59.536 37.500 5.67 0.00 31.47 1.40
3893 4188 3.259876 ACATGCAAGCTGATGTGGAAATT 59.740 39.130 5.67 0.00 31.47 1.82
3894 4189 2.829720 ACATGCAAGCTGATGTGGAAAT 59.170 40.909 5.67 0.00 31.47 2.17
3895 4190 2.241160 ACATGCAAGCTGATGTGGAAA 58.759 42.857 5.67 0.00 31.47 3.13
3896 4191 1.913778 ACATGCAAGCTGATGTGGAA 58.086 45.000 5.67 0.00 31.47 3.53
3897 4192 2.785540 TACATGCAAGCTGATGTGGA 57.214 45.000 13.84 0.00 34.60 4.02
3898 4193 3.853831 TTTACATGCAAGCTGATGTGG 57.146 42.857 13.84 0.00 34.60 4.17
3899 4194 6.715344 AATTTTTACATGCAAGCTGATGTG 57.285 33.333 13.84 0.00 34.60 3.21
3900 4195 6.930164 TCAAATTTTTACATGCAAGCTGATGT 59.070 30.769 10.26 10.26 36.72 3.06
3901 4196 7.354025 TCAAATTTTTACATGCAAGCTGATG 57.646 32.000 0.00 0.00 0.00 3.07
3902 4197 7.118680 CCTTCAAATTTTTACATGCAAGCTGAT 59.881 33.333 0.00 0.00 0.00 2.90
3903 4198 6.424509 CCTTCAAATTTTTACATGCAAGCTGA 59.575 34.615 0.00 0.00 0.00 4.26
3904 4199 6.347888 CCCTTCAAATTTTTACATGCAAGCTG 60.348 38.462 0.00 0.00 0.00 4.24
3905 4200 5.702209 CCCTTCAAATTTTTACATGCAAGCT 59.298 36.000 0.00 0.00 0.00 3.74
3906 4201 5.700373 TCCCTTCAAATTTTTACATGCAAGC 59.300 36.000 0.00 0.00 0.00 4.01
3907 4202 7.727331 TTCCCTTCAAATTTTTACATGCAAG 57.273 32.000 0.00 0.00 0.00 4.01
3908 4203 7.254590 CGTTTCCCTTCAAATTTTTACATGCAA 60.255 33.333 0.00 0.00 0.00 4.08
3909 4204 6.201806 CGTTTCCCTTCAAATTTTTACATGCA 59.798 34.615 0.00 0.00 0.00 3.96
3910 4205 6.201997 ACGTTTCCCTTCAAATTTTTACATGC 59.798 34.615 0.00 0.00 0.00 4.06
3911 4206 7.707774 ACGTTTCCCTTCAAATTTTTACATG 57.292 32.000 0.00 0.00 0.00 3.21
3912 4207 8.725405 AAACGTTTCCCTTCAAATTTTTACAT 57.275 26.923 7.96 0.00 0.00 2.29
3913 4208 8.187354 GAAACGTTTCCCTTCAAATTTTTACA 57.813 30.769 27.01 0.00 0.00 2.41
3949 4244 3.051392 GATGCAAGTTTCGGCCGGG 62.051 63.158 27.83 9.28 0.00 5.73
3978 4273 2.397751 CGAATTGATCGCAAGGCCT 58.602 52.632 0.00 0.00 45.89 5.19
3993 4288 3.587095 AGCGACTCACGATCCGAA 58.413 55.556 0.00 0.00 45.77 4.30
4004 4299 4.390556 AGGGAGGCCTGAGCGACT 62.391 66.667 12.00 0.00 41.24 4.18
4007 4302 2.585791 GAAAGAGGGAGGCCTGAGCG 62.586 65.000 12.00 0.00 41.24 5.03
4008 4303 1.223211 GAAAGAGGGAGGCCTGAGC 59.777 63.158 12.00 0.00 38.76 4.26
4010 4305 1.207791 GATGAAAGAGGGAGGCCTGA 58.792 55.000 12.00 0.00 0.00 3.86
4019 4314 1.337823 ACGGTTCGTGGATGAAAGAGG 60.338 52.381 0.00 0.00 39.18 3.69
4020 4315 2.080286 ACGGTTCGTGGATGAAAGAG 57.920 50.000 0.00 0.00 39.18 2.85
4027 4322 1.232119 GTGGAAAACGGTTCGTGGAT 58.768 50.000 0.00 0.00 39.99 3.41
4028 4323 0.814812 GGTGGAAAACGGTTCGTGGA 60.815 55.000 0.00 0.00 39.99 4.02
4030 4325 0.584876 GAGGTGGAAAACGGTTCGTG 59.415 55.000 0.00 0.00 39.99 4.35
4031 4326 0.533531 GGAGGTGGAAAACGGTTCGT 60.534 55.000 0.00 0.00 43.97 3.85
4032 4327 0.250166 AGGAGGTGGAAAACGGTTCG 60.250 55.000 0.00 0.00 0.00 3.95
4033 4328 1.071857 AGAGGAGGTGGAAAACGGTTC 59.928 52.381 0.00 0.00 0.00 3.62
4034 4329 1.137697 AGAGGAGGTGGAAAACGGTT 58.862 50.000 0.00 0.00 0.00 4.44
4035 4330 1.137697 AAGAGGAGGTGGAAAACGGT 58.862 50.000 0.00 0.00 0.00 4.83
4037 4332 3.127425 AGAAAGAGGAGGTGGAAAACG 57.873 47.619 0.00 0.00 0.00 3.60
4038 4333 4.720046 AGAAGAAAGAGGAGGTGGAAAAC 58.280 43.478 0.00 0.00 0.00 2.43
4044 4349 4.081917 GTGAGGTAGAAGAAAGAGGAGGTG 60.082 50.000 0.00 0.00 0.00 4.00
4045 4350 4.090819 GTGAGGTAGAAGAAAGAGGAGGT 58.909 47.826 0.00 0.00 0.00 3.85
4047 4352 4.011023 TCGTGAGGTAGAAGAAAGAGGAG 58.989 47.826 0.00 0.00 0.00 3.69
4048 4353 3.757493 GTCGTGAGGTAGAAGAAAGAGGA 59.243 47.826 0.00 0.00 0.00 3.71
4051 4356 3.058432 CGTGTCGTGAGGTAGAAGAAAGA 60.058 47.826 0.00 0.00 0.00 2.52
4077 4382 3.234630 AACCGAGCGGCTGCAACTA 62.235 57.895 21.93 0.00 46.23 2.24
4079 4384 4.090057 GAACCGAGCGGCTGCAAC 62.090 66.667 21.93 12.35 46.23 4.17
4092 4403 2.582498 CGCGGAGATGGACGAACC 60.582 66.667 0.00 0.00 39.54 3.62
4097 4408 3.838271 TGAGCCGCGGAGATGGAC 61.838 66.667 33.48 9.31 0.00 4.02
4131 4442 0.254178 ATGAGCAAGGCCTCGTTCAT 59.746 50.000 16.63 16.63 34.56 2.57
4166 4477 4.144703 GACGTCTTCTCCCGCCCC 62.145 72.222 8.70 0.00 0.00 5.80
4170 4481 0.728466 GTTGTCGACGTCTTCTCCCG 60.728 60.000 14.70 0.00 0.00 5.14
4171 4482 0.388263 GGTTGTCGACGTCTTCTCCC 60.388 60.000 14.70 4.41 0.00 4.30
4181 4492 2.740714 GGATGCGCTGGTTGTCGAC 61.741 63.158 9.73 9.11 0.00 4.20
4190 4501 4.247380 GGGAGGGAGGATGCGCTG 62.247 72.222 9.73 0.00 0.00 5.18
4196 4507 1.629464 GGAAGAAAGGGGAGGGAGGAT 60.629 57.143 0.00 0.00 0.00 3.24
4208 4519 4.226168 ACATGGGACTAAGAGGGAAGAAAG 59.774 45.833 0.00 0.00 0.00 2.62
4212 4523 2.840651 ACACATGGGACTAAGAGGGAAG 59.159 50.000 0.00 0.00 0.00 3.46
4213 4524 2.915869 ACACATGGGACTAAGAGGGAA 58.084 47.619 0.00 0.00 0.00 3.97
4214 4525 2.642171 ACACATGGGACTAAGAGGGA 57.358 50.000 0.00 0.00 0.00 4.20
4216 4527 2.434702 GGGTACACATGGGACTAAGAGG 59.565 54.545 0.00 0.00 0.00 3.69
4221 4532 2.932184 TGAGGGTACACATGGGACTA 57.068 50.000 0.00 0.00 0.00 2.59
4224 4535 4.975147 AGAAATATGAGGGTACACATGGGA 59.025 41.667 0.00 0.00 0.00 4.37
4228 4539 5.130975 TCTGCAGAAATATGAGGGTACACAT 59.869 40.000 15.67 1.37 0.00 3.21
4229 4540 4.469586 TCTGCAGAAATATGAGGGTACACA 59.530 41.667 15.67 0.00 0.00 3.72
4230 4541 4.811557 GTCTGCAGAAATATGAGGGTACAC 59.188 45.833 20.19 0.00 0.00 2.90
4231 4542 4.441495 CGTCTGCAGAAATATGAGGGTACA 60.441 45.833 20.19 0.00 0.00 2.90
4232 4543 4.051922 CGTCTGCAGAAATATGAGGGTAC 58.948 47.826 20.19 0.21 0.00 3.34
4233 4544 3.958147 TCGTCTGCAGAAATATGAGGGTA 59.042 43.478 20.19 0.00 0.00 3.69
4234 4545 2.766263 TCGTCTGCAGAAATATGAGGGT 59.234 45.455 20.19 0.00 0.00 4.34
4236 4547 2.799412 GCTCGTCTGCAGAAATATGAGG 59.201 50.000 20.19 0.19 0.00 3.86
4237 4548 3.490155 CAGCTCGTCTGCAGAAATATGAG 59.510 47.826 20.19 19.42 35.78 2.90
4238 4549 3.451526 CAGCTCGTCTGCAGAAATATGA 58.548 45.455 20.19 10.43 35.78 2.15
4239 4550 3.856104 CAGCTCGTCTGCAGAAATATG 57.144 47.619 20.19 10.17 35.78 1.78
4249 4560 3.114616 CCGGTTGCAGCTCGTCTG 61.115 66.667 0.00 3.64 45.62 3.51
4259 4570 1.970917 CTCTGACGATTGCCGGTTGC 61.971 60.000 1.90 0.00 43.93 4.17
4260 4571 1.970917 GCTCTGACGATTGCCGGTTG 61.971 60.000 1.90 0.00 43.93 3.77
4261 4572 1.741770 GCTCTGACGATTGCCGGTT 60.742 57.895 1.90 0.00 43.93 4.44
4262 4573 2.125512 GCTCTGACGATTGCCGGT 60.126 61.111 1.90 0.00 43.93 5.28
4263 4574 2.169789 CAGCTCTGACGATTGCCGG 61.170 63.158 0.00 0.00 43.93 6.13
4264 4575 2.806856 GCAGCTCTGACGATTGCCG 61.807 63.158 0.29 0.00 45.44 5.69
4265 4576 1.300971 TTGCAGCTCTGACGATTGCC 61.301 55.000 0.29 0.00 32.03 4.52
4266 4577 0.179205 GTTGCAGCTCTGACGATTGC 60.179 55.000 0.29 0.00 33.03 3.56
4267 4578 0.445436 GGTTGCAGCTCTGACGATTG 59.555 55.000 0.00 0.00 0.00 2.67
4268 4579 0.035317 TGGTTGCAGCTCTGACGATT 59.965 50.000 0.00 0.00 0.00 3.34
4269 4580 0.390866 CTGGTTGCAGCTCTGACGAT 60.391 55.000 0.00 0.00 0.00 3.73
4305 4616 4.355543 TCCAGCAATAAAGAAATCGTGC 57.644 40.909 0.00 0.00 0.00 5.34
4306 4617 5.095490 GGTTCCAGCAATAAAGAAATCGTG 58.905 41.667 0.00 0.00 0.00 4.35
4310 4621 4.837860 TGGTGGTTCCAGCAATAAAGAAAT 59.162 37.500 19.35 0.00 41.93 2.17
4311 4622 4.219115 TGGTGGTTCCAGCAATAAAGAAA 58.781 39.130 19.35 0.00 41.93 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.