Multiple sequence alignment - TraesCS6B01G369800
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS6B01G369800
chr6B
100.000
3650
0
0
1
3650
643270544
643266895
0.000000e+00
6741.0
1
TraesCS6B01G369800
chr6B
92.436
2512
147
19
352
2838
643437372
643434879
0.000000e+00
3546.0
2
TraesCS6B01G369800
chr6B
88.816
456
40
7
3194
3648
643431030
643430585
1.920000e-152
549.0
3
TraesCS6B01G369800
chr6B
86.644
292
21
9
2
278
643438546
643438258
1.270000e-79
307.0
4
TraesCS6B01G369800
chr6B
82.736
307
36
12
3312
3616
130965357
130965648
1.300000e-64
257.0
5
TraesCS6B01G369800
chr6B
85.802
162
17
2
2943
3100
643431486
643431327
2.250000e-37
167.0
6
TraesCS6B01G369800
chr6B
95.604
91
4
0
278
368
643437474
643437384
2.940000e-31
147.0
7
TraesCS6B01G369800
chr6A
92.053
3410
219
17
276
3648
572143002
572139608
0.000000e+00
4748.0
8
TraesCS6B01G369800
chr6A
84.691
307
39
7
3312
3616
73639200
73639500
2.130000e-77
300.0
9
TraesCS6B01G369800
chr6A
84.091
264
19
13
34
278
572144057
572143798
2.190000e-57
233.0
10
TraesCS6B01G369800
chr6A
84.286
70
5
3
3084
3147
613272593
613272662
3.040000e-06
63.9
11
TraesCS6B01G369800
chr6D
91.531
2267
149
20
532
2771
427496169
427493919
0.000000e+00
3083.0
12
TraesCS6B01G369800
chr6D
89.908
872
62
14
2237
3100
427492369
427491516
0.000000e+00
1099.0
13
TraesCS6B01G369800
chr6D
88.621
457
40
6
3194
3648
427493686
427493240
2.480000e-151
545.0
14
TraesCS6B01G369800
chr6D
88.352
455
43
4
3194
3648
427486756
427486312
4.150000e-149
538.0
15
TraesCS6B01G369800
chr6D
84.663
489
52
10
3162
3648
427491429
427490962
1.980000e-127
466.0
16
TraesCS6B01G369800
chr6D
95.736
258
11
0
277
534
427496509
427496252
2.030000e-112
416.0
17
TraesCS6B01G369800
chr6D
87.222
360
36
3
3194
3553
427965759
427966108
5.680000e-108
401.0
18
TraesCS6B01G369800
chr6D
94.872
195
9
1
84
278
427871230
427871423
1.650000e-78
303.0
19
TraesCS6B01G369800
chr6D
82.709
347
44
8
3312
3650
58446631
58446969
9.910000e-76
294.0
20
TraesCS6B01G369800
chr6D
82.468
154
20
4
2951
3100
427965314
427965464
1.060000e-25
128.0
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS6B01G369800
chr6B
643266895
643270544
3649
True
6741.0
6741
100.0000
1
3650
1
chr6B.!!$R1
3649
1
TraesCS6B01G369800
chr6B
643430585
643438546
7961
True
943.2
3546
89.8604
2
3648
5
chr6B.!!$R2
3646
2
TraesCS6B01G369800
chr6A
572139608
572144057
4449
True
2490.5
4748
88.0720
34
3648
2
chr6A.!!$R1
3614
3
TraesCS6B01G369800
chr6D
427490962
427496509
5547
True
1121.8
3083
90.0918
277
3648
5
chr6D.!!$R2
3371
4
TraesCS6B01G369800
chr6D
427965314
427966108
794
False
264.5
401
84.8450
2951
3553
2
chr6D.!!$F3
602
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
579
1553
2.283834
ACCCCCTTGGATCATTGTACA
58.716
47.619
0.0
0.0
38.0
2.90
F
1338
2342
1.303317
ACCCAATGCCTTCACCGTC
60.303
57.895
0.0
0.0
0.0
4.79
F
1907
2914
0.038310
GGGCTTCTACACAAGGGCTT
59.962
55.000
0.0
0.0
0.0
4.35
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1586
2590
0.179119
CATACCGTCGAACACCTCCC
60.179
60.0
0.00
0.00
0.00
4.30
R
2307
3317
0.892358
CACCTGCATGTGGCTTCACT
60.892
55.0
13.75
0.00
45.15
3.41
R
3404
10066
2.205022
ACCAGTTGACACCATCATGG
57.795
50.0
0.54
0.54
45.02
3.66
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
23
24
6.874288
CCATGGCAATTTTTAGTTTTTGGA
57.126
33.333
0.00
0.00
0.00
3.53
24
25
6.667370
CCATGGCAATTTTTAGTTTTTGGAC
58.333
36.000
0.00
0.00
0.00
4.02
25
26
6.293900
CCATGGCAATTTTTAGTTTTTGGACC
60.294
38.462
0.00
0.00
0.00
4.46
26
27
5.745227
TGGCAATTTTTAGTTTTTGGACCA
58.255
33.333
0.00
0.00
0.00
4.02
28
29
6.261826
TGGCAATTTTTAGTTTTTGGACCATG
59.738
34.615
0.00
0.00
0.00
3.66
29
30
6.262049
GGCAATTTTTAGTTTTTGGACCATGT
59.738
34.615
0.00
0.00
0.00
3.21
30
31
7.351981
GCAATTTTTAGTTTTTGGACCATGTC
58.648
34.615
0.00
0.00
0.00
3.06
34
35
8.848474
TTTTTAGTTTTTGGACCATGTCAAAA
57.152
26.923
12.01
12.01
34.15
2.44
35
36
9.454859
TTTTTAGTTTTTGGACCATGTCAAAAT
57.545
25.926
14.98
7.84
35.69
1.82
76
77
6.223120
GCAAATTTAGTTTCTGGAACATGGT
58.777
36.000
0.98
0.00
40.84
3.55
79
80
9.927668
CAAATTTAGTTTCTGGAACATGGTAAT
57.072
29.630
0.98
0.00
40.84
1.89
161
164
8.777865
TGGAAAATTTCACAACATAACACAAA
57.222
26.923
8.09
0.00
0.00
2.83
171
174
4.205065
ACATAACACAAAATGCCATGGG
57.795
40.909
15.13
0.00
30.46
4.00
172
175
3.582208
ACATAACACAAAATGCCATGGGT
59.418
39.130
15.13
0.00
33.79
4.51
174
177
5.424895
ACATAACACAAAATGCCATGGGTAT
59.575
36.000
15.13
0.00
30.31
2.73
176
179
5.596836
AACACAAAATGCCATGGGTATAG
57.403
39.130
15.13
0.00
30.31
1.31
177
180
4.865905
ACACAAAATGCCATGGGTATAGA
58.134
39.130
15.13
0.00
29.65
1.98
325
1186
7.148390
CCGACTTTAAATTTTTGTGGTTTGGTT
60.148
33.333
0.00
0.00
0.00
3.67
404
1293
5.339177
CATTTTTCAGTGTTAGTGTGTGCA
58.661
37.500
0.00
0.00
0.00
4.57
428
1317
7.577426
GCATTTGTGAGTTATTCCAAAGGATGA
60.577
37.037
0.00
0.00
33.49
2.92
475
1364
3.890756
ACTGCCATTTGATTCACTTCACA
59.109
39.130
0.00
0.00
0.00
3.58
534
1508
5.389516
GGGCATTATTTCGCAGATAACTACG
60.390
44.000
0.00
0.00
35.04
3.51
566
1540
3.143168
TCCCAAGAAACAATTACCCCCTT
59.857
43.478
0.00
0.00
0.00
3.95
579
1553
2.283834
ACCCCCTTGGATCATTGTACA
58.716
47.619
0.00
0.00
38.00
2.90
680
1657
4.322080
TGACCGATCCATATCAACTGTC
57.678
45.455
0.00
0.00
31.93
3.51
721
1704
8.814038
ATCAACTTTGGATGCTAAATCTAACT
57.186
30.769
0.00
0.00
0.00
2.24
845
1828
3.056107
TCACTTGACGATAAGTTGAGGGG
60.056
47.826
6.38
0.00
38.78
4.79
1338
2342
1.303317
ACCCAATGCCTTCACCGTC
60.303
57.895
0.00
0.00
0.00
4.79
1389
2393
4.065281
GGGGTCGACGAGGTGTGG
62.065
72.222
9.92
0.00
0.00
4.17
1584
2588
3.731728
GGGGATGTGGAGGCTGCA
61.732
66.667
3.93
3.93
0.00
4.41
1586
2590
2.821366
GGATGTGGAGGCTGCACG
60.821
66.667
29.89
0.00
41.94
5.34
1619
2623
1.054978
GGTATGGTGGAGAGGGACCC
61.055
65.000
0.59
0.59
0.00
4.46
1663
2667
4.715523
GGTACCTGCGGCAAGGCA
62.716
66.667
15.44
3.51
41.46
4.75
1674
2678
1.373748
GCAAGGCAATGCTGGTGTG
60.374
57.895
4.82
0.00
43.06
3.82
1795
2799
1.453155
GGTGTTCAATCAGATGCGGT
58.547
50.000
0.00
0.00
0.00
5.68
1799
2803
2.483877
TGTTCAATCAGATGCGGTTGAC
59.516
45.455
0.00
0.00
30.96
3.18
1907
2914
0.038310
GGGCTTCTACACAAGGGCTT
59.962
55.000
0.00
0.00
0.00
4.35
2037
3044
5.121298
CACAGTCTCTTACAATGTGATGGTG
59.879
44.000
0.00
0.00
43.02
4.17
2058
3065
2.180017
GCTCTTGCGCAACATGGG
59.820
61.111
21.02
11.35
0.00
4.00
2108
3115
3.801698
ACGACATGATTGAGGAAGGATG
58.198
45.455
0.00
0.00
0.00
3.51
2136
3143
3.489355
TGATGCAGTGACATTTCTTGGT
58.511
40.909
0.00
0.00
0.00
3.67
2343
3353
0.610232
GTGTCTGGGGAGCATTGCTT
60.610
55.000
13.35
0.00
39.88
3.91
2371
5456
1.940752
GCCGGAAGCATTGCAATGTTT
60.941
47.619
33.18
33.18
41.59
2.83
2448
5533
3.058224
GCAACTACGTTCTCCTTGCAAAT
60.058
43.478
0.00
0.00
37.70
2.32
2465
5550
2.493713
AATACACTAGCTCGAAGCCG
57.506
50.000
0.00
0.00
43.77
5.52
2480
5568
4.552365
CCGGCGATGGGATGCTGT
62.552
66.667
9.30
0.00
35.69
4.40
2481
5569
2.514592
CGGCGATGGGATGCTGTT
60.515
61.111
0.00
0.00
32.78
3.16
2482
5570
2.827051
CGGCGATGGGATGCTGTTG
61.827
63.158
0.00
0.00
32.78
3.33
2488
5576
2.037641
CGATGGGATGCTGTTGAGGATA
59.962
50.000
0.00
0.00
28.67
2.59
2494
5582
4.489810
GGATGCTGTTGAGGATATACGAG
58.510
47.826
0.00
0.00
28.67
4.18
2513
5601
1.213926
AGGACTGATGAGGGGAAATGC
59.786
52.381
0.00
0.00
0.00
3.56
2556
5644
1.282157
AGCTGGGTTGAAGTGGATACC
59.718
52.381
0.00
0.00
0.00
2.73
2595
5683
0.554792
CAGGGGATTTCAGCCATCCT
59.445
55.000
0.00
0.00
40.32
3.24
2633
5721
3.759581
ACAACATTCTGGAGCATCTGTT
58.240
40.909
0.00
0.00
33.73
3.16
2653
5741
4.464597
TGTTTTTGCAACCAACCTAAGACT
59.535
37.500
15.09
0.00
0.00
3.24
2729
5818
9.345517
CAACACAACTACCATGAAATATTGAAG
57.654
33.333
0.00
0.00
0.00
3.02
2779
5868
0.175760
CCTCCGAGAAGCCGAAATGA
59.824
55.000
0.00
0.00
0.00
2.57
2906
9232
2.989166
GGCAGCAGAAATAGTGCAAAAC
59.011
45.455
0.00
0.00
43.82
2.43
3001
9396
5.903810
AGTATAGGTTTGGTCGATGAAGAC
58.096
41.667
0.00
0.00
40.25
3.01
3035
9430
8.268850
AGTACATGTAATCCTTTCATGTTCAC
57.731
34.615
7.25
9.52
46.26
3.18
3088
9546
2.771943
TGTCTCCTGTTGTGGAAAGTCT
59.228
45.455
0.00
0.00
35.43
3.24
3113
9619
9.937175
CTGATTAAGGTAAGCTATTTACTTTGC
57.063
33.333
2.57
0.00
40.51
3.68
3136
9642
5.140872
CGTGCGTTGTGAACAATTTATGTA
58.859
37.500
0.00
0.00
42.99
2.29
3148
9654
8.963130
TGAACAATTTATGTAAGAAAAAGTGCG
58.037
29.630
0.00
0.00
42.99
5.34
3151
9657
9.607285
ACAATTTATGTAAGAAAAAGTGCGTAG
57.393
29.630
0.00
0.00
41.63
3.51
3189
9849
7.781548
AAAACAGAAGAAACGAGCTTTACTA
57.218
32.000
0.00
0.00
0.00
1.82
3227
9889
8.299570
TCATTTCTTTCTTTTTCCTATGCAGTC
58.700
33.333
0.00
0.00
0.00
3.51
3256
9918
5.848406
TGTTTTATTTCAATGGGGTGTCAC
58.152
37.500
0.00
0.00
0.00
3.67
3270
9932
1.000060
GTGTCACAACTGGCAATGCAT
60.000
47.619
7.79
0.00
32.43
3.96
3271
9933
1.270274
TGTCACAACTGGCAATGCATC
59.730
47.619
7.79
0.00
0.00
3.91
3272
9934
1.270274
GTCACAACTGGCAATGCATCA
59.730
47.619
7.79
0.00
0.00
3.07
3273
9935
2.094390
GTCACAACTGGCAATGCATCAT
60.094
45.455
7.79
0.00
0.00
2.45
3274
9936
3.129113
GTCACAACTGGCAATGCATCATA
59.871
43.478
7.79
0.00
0.00
2.15
3275
9937
3.762823
TCACAACTGGCAATGCATCATAA
59.237
39.130
7.79
0.00
0.00
1.90
3276
9938
4.220163
TCACAACTGGCAATGCATCATAAA
59.780
37.500
7.79
0.00
0.00
1.40
3277
9939
5.105269
TCACAACTGGCAATGCATCATAAAT
60.105
36.000
7.79
0.00
0.00
1.40
3355
10017
4.977741
AAGATTGAAAGCGCAATTTGTG
57.022
36.364
11.47
5.58
38.53
3.33
3435
10098
5.589050
GGTGTCAACTGGTTAGTCTTTTTCT
59.411
40.000
0.00
0.00
35.69
2.52
3451
10114
9.875691
AGTCTTTTTCTTTGTTTTGATTAGCTT
57.124
25.926
0.00
0.00
0.00
3.74
3452
10115
9.906111
GTCTTTTTCTTTGTTTTGATTAGCTTG
57.094
29.630
0.00
0.00
0.00
4.01
3532
10195
3.873952
GCAATGTCTTCATGGTCTCTACC
59.126
47.826
0.00
0.00
46.98
3.18
3553
10216
4.705023
ACCGTTTCCCCATTCTTCAATAAG
59.295
41.667
0.00
0.00
0.00
1.73
3583
10246
6.028987
GCAACTTGAACAAATGTGCAATTTT
58.971
32.000
7.40
2.22
42.32
1.82
3640
10303
5.826737
GGCTCCCTTTTAGATACCTAAAACC
59.173
44.000
0.00
0.00
45.08
3.27
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
1
2
6.261826
TGGTCCAAAAACTAAAAATTGCCATG
59.738
34.615
0.00
0.00
0.00
3.66
2
3
6.360618
TGGTCCAAAAACTAAAAATTGCCAT
58.639
32.000
0.00
0.00
0.00
4.40
3
4
5.745227
TGGTCCAAAAACTAAAAATTGCCA
58.255
33.333
0.00
0.00
0.00
4.92
5
6
7.011857
TGACATGGTCCAAAAACTAAAAATTGC
59.988
33.333
0.00
0.00
0.00
3.56
6
7
8.430801
TGACATGGTCCAAAAACTAAAAATTG
57.569
30.769
0.00
0.00
0.00
2.32
8
9
9.454859
TTTTGACATGGTCCAAAAACTAAAAAT
57.545
25.926
15.66
0.00
27.02
1.82
10
11
9.454859
AATTTTGACATGGTCCAAAAACTAAAA
57.545
25.926
19.42
0.60
32.46
1.52
14
15
9.625747
AATTAATTTTGACATGGTCCAAAAACT
57.374
25.926
19.42
14.42
32.46
2.66
107
108
2.540265
TTTTTGCCATGCCACGAAAT
57.460
40.000
0.00
0.00
0.00
2.17
216
234
3.527533
TGCCATGTTACCAAGACGATAC
58.472
45.455
0.00
0.00
0.00
2.24
380
1269
4.207019
GCACACACTAACACTGAAAAATGC
59.793
41.667
0.00
0.00
0.00
3.56
404
1293
8.599624
ATCATCCTTTGGAATAACTCACAAAT
57.400
30.769
0.00
0.00
34.34
2.32
475
1364
5.925506
TTGAATTCTTCATGGTGCATCAT
57.074
34.783
6.64
6.64
39.84
2.45
566
1540
3.818210
ACGCAACTTTGTACAATGATCCA
59.182
39.130
23.89
2.22
0.00
3.41
579
1553
1.890489
GGGGGTAATTGACGCAACTTT
59.110
47.619
0.00
0.00
42.75
2.66
680
1657
8.299262
CAAAGTTGATATTGGATCCGTACTAG
57.701
38.462
7.39
0.00
0.00
2.57
767
1750
8.737168
TCAATCTCTCAACTCTTTTCTTTTCA
57.263
30.769
0.00
0.00
0.00
2.69
1201
2205
1.605738
AGAGGTAGACGTTGGCGGT
60.606
57.895
0.00
0.00
43.45
5.68
1326
2330
2.343758
GAGCTGACGGTGAAGGCA
59.656
61.111
0.00
0.00
0.00
4.75
1378
2382
2.357517
CACCTGCCACACCTCGTC
60.358
66.667
0.00
0.00
0.00
4.20
1379
2383
4.626081
GCACCTGCCACACCTCGT
62.626
66.667
0.00
0.00
34.31
4.18
1389
2393
2.594592
AAGAACCCGTGCACCTGC
60.595
61.111
12.15
0.00
42.50
4.85
1584
2588
3.677648
CCGTCGAACACCTCCCGT
61.678
66.667
0.00
0.00
0.00
5.28
1586
2590
0.179119
CATACCGTCGAACACCTCCC
60.179
60.000
0.00
0.00
0.00
4.30
1663
2667
2.360350
CCTCGCCACACCAGCATT
60.360
61.111
0.00
0.00
0.00
3.56
1757
2761
2.490217
CTACCGAGTCAGCCCACG
59.510
66.667
0.00
0.00
0.00
4.94
1795
2799
2.281208
CGGCTGGAAACCCGTCAA
60.281
61.111
0.00
0.00
39.67
3.18
1812
2819
1.153509
GGCCATTGTTGCAGCATCC
60.154
57.895
3.36
0.13
0.00
3.51
1881
2888
0.692476
TGTGTAGAAGCCCATGCACT
59.308
50.000
0.00
0.00
41.13
4.40
1907
2914
3.253921
CACATGGCAGTTCATCTCAACAA
59.746
43.478
0.00
0.00
0.00
2.83
1911
2918
1.456296
GCACATGGCAGTTCATCTCA
58.544
50.000
0.00
0.00
43.97
3.27
2013
3020
5.121298
CACCATCACATTGTAAGAGACTGTG
59.879
44.000
0.00
0.00
36.18
3.66
2014
3021
5.012046
TCACCATCACATTGTAAGAGACTGT
59.988
40.000
0.00
0.00
0.00
3.55
2016
3023
5.247110
AGTCACCATCACATTGTAAGAGACT
59.753
40.000
0.00
0.00
0.00
3.24
2019
3026
4.093998
GCAGTCACCATCACATTGTAAGAG
59.906
45.833
0.00
0.00
0.00
2.85
2108
3115
4.783621
TCACTGCATCAGGCCGCC
62.784
66.667
0.00
0.00
43.89
6.13
2307
3317
0.892358
CACCTGCATGTGGCTTCACT
60.892
55.000
13.75
0.00
45.15
3.41
2448
5533
2.001361
GCCGGCTTCGAGCTAGTGTA
62.001
60.000
22.15
0.00
41.99
2.90
2465
5550
1.442526
CTCAACAGCATCCCATCGCC
61.443
60.000
0.00
0.00
0.00
5.54
2480
5568
5.631119
TCATCAGTCCTCGTATATCCTCAA
58.369
41.667
0.00
0.00
0.00
3.02
2481
5569
5.242795
TCATCAGTCCTCGTATATCCTCA
57.757
43.478
0.00
0.00
0.00
3.86
2482
5570
4.638421
CCTCATCAGTCCTCGTATATCCTC
59.362
50.000
0.00
0.00
0.00
3.71
2488
5576
1.499438
TCCCCTCATCAGTCCTCGTAT
59.501
52.381
0.00
0.00
0.00
3.06
2494
5582
1.213926
AGCATTTCCCCTCATCAGTCC
59.786
52.381
0.00
0.00
0.00
3.85
2513
5601
6.238593
GCTGAGCCCTATATCTTTTTCAACAG
60.239
42.308
0.00
0.00
0.00
3.16
2577
5665
2.061061
CTAGGATGGCTGAAATCCCCT
58.939
52.381
5.67
0.00
44.09
4.79
2633
5721
6.603997
TCTTAAGTCTTAGGTTGGTTGCAAAA
59.396
34.615
0.00
0.00
0.00
2.44
2687
5776
1.076332
GTTGTCCTGTCGCCATGTAC
58.924
55.000
0.00
0.00
0.00
2.90
2729
5818
9.778993
TCTTCTCATTAAAGTACGTGTATACAC
57.221
33.333
23.53
23.53
43.15
2.90
2779
5868
5.717119
ATTGGAACTACCCTAAGCTCATT
57.283
39.130
0.00
0.00
38.00
2.57
2906
9232
6.441274
ACACTGTTTGCATGTTTCTCTAATG
58.559
36.000
0.00
0.00
0.00
1.90
2972
9358
6.604396
TCATCGACCAAACCTATACTCTTGTA
59.396
38.462
0.00
0.00
0.00
2.41
2974
9360
5.902681
TCATCGACCAAACCTATACTCTTG
58.097
41.667
0.00
0.00
0.00
3.02
2975
9361
6.380274
TCTTCATCGACCAAACCTATACTCTT
59.620
38.462
0.00
0.00
0.00
2.85
2978
9364
5.903810
GTCTTCATCGACCAAACCTATACT
58.096
41.667
0.00
0.00
0.00
2.12
3001
9396
3.551846
GATTACATGTACTTGGTGGGGG
58.448
50.000
4.68
0.00
0.00
5.40
3035
9430
2.466870
TTTTGCTGTACAGTGTTGCG
57.533
45.000
23.44
0.00
0.00
4.85
3059
9466
3.560025
CCACAACAGGAGACAGGCTAAAT
60.560
47.826
0.00
0.00
0.00
1.40
3077
9484
5.938125
GCTTACCTTAATCAGACTTTCCACA
59.062
40.000
0.00
0.00
0.00
4.17
3088
9546
8.609176
CGCAAAGTAAATAGCTTACCTTAATCA
58.391
33.333
0.00
0.00
40.84
2.57
3113
9619
3.971871
ACATAAATTGTTCACAACGCACG
59.028
39.130
0.00
0.00
38.86
5.34
3148
9654
6.884187
TCTGTTTTTCTATGCACGTTTCTAC
58.116
36.000
0.00
0.00
0.00
2.59
3151
9657
6.427150
TCTTCTGTTTTTCTATGCACGTTTC
58.573
36.000
0.00
0.00
0.00
2.78
3167
9673
7.781548
TTTAGTAAAGCTCGTTTCTTCTGTT
57.218
32.000
0.00
0.00
0.00
3.16
3203
9865
8.414629
AGACTGCATAGGAAAAAGAAAGAAAT
57.585
30.769
0.00
0.00
0.00
2.17
3227
9889
5.997129
ACCCCATTGAAATAAAACAAGCAAG
59.003
36.000
0.00
0.00
0.00
4.01
3256
9918
5.813157
TGAATTTATGATGCATTGCCAGTTG
59.187
36.000
6.12
0.00
0.00
3.16
3305
9967
7.592533
GCACCATGTATGCTATGTAAATTTCAG
59.407
37.037
11.05
0.00
40.08
3.02
3347
10009
6.421501
ACAACACTCATATGCAACACAAATTG
59.578
34.615
0.00
0.00
0.00
2.32
3348
10010
6.514947
ACAACACTCATATGCAACACAAATT
58.485
32.000
0.00
0.00
0.00
1.82
3404
10066
2.205022
ACCAGTTGACACCATCATGG
57.795
50.000
0.54
0.54
45.02
3.66
3435
10098
8.462811
TCTGTTACACAAGCTAATCAAAACAAA
58.537
29.630
0.00
0.00
0.00
2.83
3448
10111
5.229921
TGTTTTCACTCTGTTACACAAGC
57.770
39.130
0.00
0.00
0.00
4.01
3524
10187
2.500504
AGAATGGGGAAACGGTAGAGAC
59.499
50.000
0.00
0.00
0.00
3.36
3532
10195
5.897377
ACTTATTGAAGAATGGGGAAACG
57.103
39.130
0.00
0.00
36.45
3.60
3553
10216
6.640499
TGCACATTTGTTCAAGTTGCTATAAC
59.360
34.615
0.00
0.00
30.43
1.89
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.