Multiple sequence alignment - TraesCS6B01G369800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G369800 chr6B 100.000 3650 0 0 1 3650 643270544 643266895 0.000000e+00 6741.0
1 TraesCS6B01G369800 chr6B 92.436 2512 147 19 352 2838 643437372 643434879 0.000000e+00 3546.0
2 TraesCS6B01G369800 chr6B 88.816 456 40 7 3194 3648 643431030 643430585 1.920000e-152 549.0
3 TraesCS6B01G369800 chr6B 86.644 292 21 9 2 278 643438546 643438258 1.270000e-79 307.0
4 TraesCS6B01G369800 chr6B 82.736 307 36 12 3312 3616 130965357 130965648 1.300000e-64 257.0
5 TraesCS6B01G369800 chr6B 85.802 162 17 2 2943 3100 643431486 643431327 2.250000e-37 167.0
6 TraesCS6B01G369800 chr6B 95.604 91 4 0 278 368 643437474 643437384 2.940000e-31 147.0
7 TraesCS6B01G369800 chr6A 92.053 3410 219 17 276 3648 572143002 572139608 0.000000e+00 4748.0
8 TraesCS6B01G369800 chr6A 84.691 307 39 7 3312 3616 73639200 73639500 2.130000e-77 300.0
9 TraesCS6B01G369800 chr6A 84.091 264 19 13 34 278 572144057 572143798 2.190000e-57 233.0
10 TraesCS6B01G369800 chr6A 84.286 70 5 3 3084 3147 613272593 613272662 3.040000e-06 63.9
11 TraesCS6B01G369800 chr6D 91.531 2267 149 20 532 2771 427496169 427493919 0.000000e+00 3083.0
12 TraesCS6B01G369800 chr6D 89.908 872 62 14 2237 3100 427492369 427491516 0.000000e+00 1099.0
13 TraesCS6B01G369800 chr6D 88.621 457 40 6 3194 3648 427493686 427493240 2.480000e-151 545.0
14 TraesCS6B01G369800 chr6D 88.352 455 43 4 3194 3648 427486756 427486312 4.150000e-149 538.0
15 TraesCS6B01G369800 chr6D 84.663 489 52 10 3162 3648 427491429 427490962 1.980000e-127 466.0
16 TraesCS6B01G369800 chr6D 95.736 258 11 0 277 534 427496509 427496252 2.030000e-112 416.0
17 TraesCS6B01G369800 chr6D 87.222 360 36 3 3194 3553 427965759 427966108 5.680000e-108 401.0
18 TraesCS6B01G369800 chr6D 94.872 195 9 1 84 278 427871230 427871423 1.650000e-78 303.0
19 TraesCS6B01G369800 chr6D 82.709 347 44 8 3312 3650 58446631 58446969 9.910000e-76 294.0
20 TraesCS6B01G369800 chr6D 82.468 154 20 4 2951 3100 427965314 427965464 1.060000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G369800 chr6B 643266895 643270544 3649 True 6741.0 6741 100.0000 1 3650 1 chr6B.!!$R1 3649
1 TraesCS6B01G369800 chr6B 643430585 643438546 7961 True 943.2 3546 89.8604 2 3648 5 chr6B.!!$R2 3646
2 TraesCS6B01G369800 chr6A 572139608 572144057 4449 True 2490.5 4748 88.0720 34 3648 2 chr6A.!!$R1 3614
3 TraesCS6B01G369800 chr6D 427490962 427496509 5547 True 1121.8 3083 90.0918 277 3648 5 chr6D.!!$R2 3371
4 TraesCS6B01G369800 chr6D 427965314 427966108 794 False 264.5 401 84.8450 2951 3553 2 chr6D.!!$F3 602


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
579 1553 2.283834 ACCCCCTTGGATCATTGTACA 58.716 47.619 0.0 0.0 38.0 2.90 F
1338 2342 1.303317 ACCCAATGCCTTCACCGTC 60.303 57.895 0.0 0.0 0.0 4.79 F
1907 2914 0.038310 GGGCTTCTACACAAGGGCTT 59.962 55.000 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1586 2590 0.179119 CATACCGTCGAACACCTCCC 60.179 60.0 0.00 0.00 0.00 4.30 R
2307 3317 0.892358 CACCTGCATGTGGCTTCACT 60.892 55.0 13.75 0.00 45.15 3.41 R
3404 10066 2.205022 ACCAGTTGACACCATCATGG 57.795 50.0 0.54 0.54 45.02 3.66 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.874288 CCATGGCAATTTTTAGTTTTTGGA 57.126 33.333 0.00 0.00 0.00 3.53
24 25 6.667370 CCATGGCAATTTTTAGTTTTTGGAC 58.333 36.000 0.00 0.00 0.00 4.02
25 26 6.293900 CCATGGCAATTTTTAGTTTTTGGACC 60.294 38.462 0.00 0.00 0.00 4.46
26 27 5.745227 TGGCAATTTTTAGTTTTTGGACCA 58.255 33.333 0.00 0.00 0.00 4.02
28 29 6.261826 TGGCAATTTTTAGTTTTTGGACCATG 59.738 34.615 0.00 0.00 0.00 3.66
29 30 6.262049 GGCAATTTTTAGTTTTTGGACCATGT 59.738 34.615 0.00 0.00 0.00 3.21
30 31 7.351981 GCAATTTTTAGTTTTTGGACCATGTC 58.648 34.615 0.00 0.00 0.00 3.06
34 35 8.848474 TTTTTAGTTTTTGGACCATGTCAAAA 57.152 26.923 12.01 12.01 34.15 2.44
35 36 9.454859 TTTTTAGTTTTTGGACCATGTCAAAAT 57.545 25.926 14.98 7.84 35.69 1.82
76 77 6.223120 GCAAATTTAGTTTCTGGAACATGGT 58.777 36.000 0.98 0.00 40.84 3.55
79 80 9.927668 CAAATTTAGTTTCTGGAACATGGTAAT 57.072 29.630 0.98 0.00 40.84 1.89
161 164 8.777865 TGGAAAATTTCACAACATAACACAAA 57.222 26.923 8.09 0.00 0.00 2.83
171 174 4.205065 ACATAACACAAAATGCCATGGG 57.795 40.909 15.13 0.00 30.46 4.00
172 175 3.582208 ACATAACACAAAATGCCATGGGT 59.418 39.130 15.13 0.00 33.79 4.51
174 177 5.424895 ACATAACACAAAATGCCATGGGTAT 59.575 36.000 15.13 0.00 30.31 2.73
176 179 5.596836 AACACAAAATGCCATGGGTATAG 57.403 39.130 15.13 0.00 30.31 1.31
177 180 4.865905 ACACAAAATGCCATGGGTATAGA 58.134 39.130 15.13 0.00 29.65 1.98
325 1186 7.148390 CCGACTTTAAATTTTTGTGGTTTGGTT 60.148 33.333 0.00 0.00 0.00 3.67
404 1293 5.339177 CATTTTTCAGTGTTAGTGTGTGCA 58.661 37.500 0.00 0.00 0.00 4.57
428 1317 7.577426 GCATTTGTGAGTTATTCCAAAGGATGA 60.577 37.037 0.00 0.00 33.49 2.92
475 1364 3.890756 ACTGCCATTTGATTCACTTCACA 59.109 39.130 0.00 0.00 0.00 3.58
534 1508 5.389516 GGGCATTATTTCGCAGATAACTACG 60.390 44.000 0.00 0.00 35.04 3.51
566 1540 3.143168 TCCCAAGAAACAATTACCCCCTT 59.857 43.478 0.00 0.00 0.00 3.95
579 1553 2.283834 ACCCCCTTGGATCATTGTACA 58.716 47.619 0.00 0.00 38.00 2.90
680 1657 4.322080 TGACCGATCCATATCAACTGTC 57.678 45.455 0.00 0.00 31.93 3.51
721 1704 8.814038 ATCAACTTTGGATGCTAAATCTAACT 57.186 30.769 0.00 0.00 0.00 2.24
845 1828 3.056107 TCACTTGACGATAAGTTGAGGGG 60.056 47.826 6.38 0.00 38.78 4.79
1338 2342 1.303317 ACCCAATGCCTTCACCGTC 60.303 57.895 0.00 0.00 0.00 4.79
1389 2393 4.065281 GGGGTCGACGAGGTGTGG 62.065 72.222 9.92 0.00 0.00 4.17
1584 2588 3.731728 GGGGATGTGGAGGCTGCA 61.732 66.667 3.93 3.93 0.00 4.41
1586 2590 2.821366 GGATGTGGAGGCTGCACG 60.821 66.667 29.89 0.00 41.94 5.34
1619 2623 1.054978 GGTATGGTGGAGAGGGACCC 61.055 65.000 0.59 0.59 0.00 4.46
1663 2667 4.715523 GGTACCTGCGGCAAGGCA 62.716 66.667 15.44 3.51 41.46 4.75
1674 2678 1.373748 GCAAGGCAATGCTGGTGTG 60.374 57.895 4.82 0.00 43.06 3.82
1795 2799 1.453155 GGTGTTCAATCAGATGCGGT 58.547 50.000 0.00 0.00 0.00 5.68
1799 2803 2.483877 TGTTCAATCAGATGCGGTTGAC 59.516 45.455 0.00 0.00 30.96 3.18
1907 2914 0.038310 GGGCTTCTACACAAGGGCTT 59.962 55.000 0.00 0.00 0.00 4.35
2037 3044 5.121298 CACAGTCTCTTACAATGTGATGGTG 59.879 44.000 0.00 0.00 43.02 4.17
2058 3065 2.180017 GCTCTTGCGCAACATGGG 59.820 61.111 21.02 11.35 0.00 4.00
2108 3115 3.801698 ACGACATGATTGAGGAAGGATG 58.198 45.455 0.00 0.00 0.00 3.51
2136 3143 3.489355 TGATGCAGTGACATTTCTTGGT 58.511 40.909 0.00 0.00 0.00 3.67
2343 3353 0.610232 GTGTCTGGGGAGCATTGCTT 60.610 55.000 13.35 0.00 39.88 3.91
2371 5456 1.940752 GCCGGAAGCATTGCAATGTTT 60.941 47.619 33.18 33.18 41.59 2.83
2448 5533 3.058224 GCAACTACGTTCTCCTTGCAAAT 60.058 43.478 0.00 0.00 37.70 2.32
2465 5550 2.493713 AATACACTAGCTCGAAGCCG 57.506 50.000 0.00 0.00 43.77 5.52
2480 5568 4.552365 CCGGCGATGGGATGCTGT 62.552 66.667 9.30 0.00 35.69 4.40
2481 5569 2.514592 CGGCGATGGGATGCTGTT 60.515 61.111 0.00 0.00 32.78 3.16
2482 5570 2.827051 CGGCGATGGGATGCTGTTG 61.827 63.158 0.00 0.00 32.78 3.33
2488 5576 2.037641 CGATGGGATGCTGTTGAGGATA 59.962 50.000 0.00 0.00 28.67 2.59
2494 5582 4.489810 GGATGCTGTTGAGGATATACGAG 58.510 47.826 0.00 0.00 28.67 4.18
2513 5601 1.213926 AGGACTGATGAGGGGAAATGC 59.786 52.381 0.00 0.00 0.00 3.56
2556 5644 1.282157 AGCTGGGTTGAAGTGGATACC 59.718 52.381 0.00 0.00 0.00 2.73
2595 5683 0.554792 CAGGGGATTTCAGCCATCCT 59.445 55.000 0.00 0.00 40.32 3.24
2633 5721 3.759581 ACAACATTCTGGAGCATCTGTT 58.240 40.909 0.00 0.00 33.73 3.16
2653 5741 4.464597 TGTTTTTGCAACCAACCTAAGACT 59.535 37.500 15.09 0.00 0.00 3.24
2729 5818 9.345517 CAACACAACTACCATGAAATATTGAAG 57.654 33.333 0.00 0.00 0.00 3.02
2779 5868 0.175760 CCTCCGAGAAGCCGAAATGA 59.824 55.000 0.00 0.00 0.00 2.57
2906 9232 2.989166 GGCAGCAGAAATAGTGCAAAAC 59.011 45.455 0.00 0.00 43.82 2.43
3001 9396 5.903810 AGTATAGGTTTGGTCGATGAAGAC 58.096 41.667 0.00 0.00 40.25 3.01
3035 9430 8.268850 AGTACATGTAATCCTTTCATGTTCAC 57.731 34.615 7.25 9.52 46.26 3.18
3088 9546 2.771943 TGTCTCCTGTTGTGGAAAGTCT 59.228 45.455 0.00 0.00 35.43 3.24
3113 9619 9.937175 CTGATTAAGGTAAGCTATTTACTTTGC 57.063 33.333 2.57 0.00 40.51 3.68
3136 9642 5.140872 CGTGCGTTGTGAACAATTTATGTA 58.859 37.500 0.00 0.00 42.99 2.29
3148 9654 8.963130 TGAACAATTTATGTAAGAAAAAGTGCG 58.037 29.630 0.00 0.00 42.99 5.34
3151 9657 9.607285 ACAATTTATGTAAGAAAAAGTGCGTAG 57.393 29.630 0.00 0.00 41.63 3.51
3189 9849 7.781548 AAAACAGAAGAAACGAGCTTTACTA 57.218 32.000 0.00 0.00 0.00 1.82
3227 9889 8.299570 TCATTTCTTTCTTTTTCCTATGCAGTC 58.700 33.333 0.00 0.00 0.00 3.51
3256 9918 5.848406 TGTTTTATTTCAATGGGGTGTCAC 58.152 37.500 0.00 0.00 0.00 3.67
3270 9932 1.000060 GTGTCACAACTGGCAATGCAT 60.000 47.619 7.79 0.00 32.43 3.96
3271 9933 1.270274 TGTCACAACTGGCAATGCATC 59.730 47.619 7.79 0.00 0.00 3.91
3272 9934 1.270274 GTCACAACTGGCAATGCATCA 59.730 47.619 7.79 0.00 0.00 3.07
3273 9935 2.094390 GTCACAACTGGCAATGCATCAT 60.094 45.455 7.79 0.00 0.00 2.45
3274 9936 3.129113 GTCACAACTGGCAATGCATCATA 59.871 43.478 7.79 0.00 0.00 2.15
3275 9937 3.762823 TCACAACTGGCAATGCATCATAA 59.237 39.130 7.79 0.00 0.00 1.90
3276 9938 4.220163 TCACAACTGGCAATGCATCATAAA 59.780 37.500 7.79 0.00 0.00 1.40
3277 9939 5.105269 TCACAACTGGCAATGCATCATAAAT 60.105 36.000 7.79 0.00 0.00 1.40
3355 10017 4.977741 AAGATTGAAAGCGCAATTTGTG 57.022 36.364 11.47 5.58 38.53 3.33
3435 10098 5.589050 GGTGTCAACTGGTTAGTCTTTTTCT 59.411 40.000 0.00 0.00 35.69 2.52
3451 10114 9.875691 AGTCTTTTTCTTTGTTTTGATTAGCTT 57.124 25.926 0.00 0.00 0.00 3.74
3452 10115 9.906111 GTCTTTTTCTTTGTTTTGATTAGCTTG 57.094 29.630 0.00 0.00 0.00 4.01
3532 10195 3.873952 GCAATGTCTTCATGGTCTCTACC 59.126 47.826 0.00 0.00 46.98 3.18
3553 10216 4.705023 ACCGTTTCCCCATTCTTCAATAAG 59.295 41.667 0.00 0.00 0.00 1.73
3583 10246 6.028987 GCAACTTGAACAAATGTGCAATTTT 58.971 32.000 7.40 2.22 42.32 1.82
3640 10303 5.826737 GGCTCCCTTTTAGATACCTAAAACC 59.173 44.000 0.00 0.00 45.08 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 6.261826 TGGTCCAAAAACTAAAAATTGCCATG 59.738 34.615 0.00 0.00 0.00 3.66
2 3 6.360618 TGGTCCAAAAACTAAAAATTGCCAT 58.639 32.000 0.00 0.00 0.00 4.40
3 4 5.745227 TGGTCCAAAAACTAAAAATTGCCA 58.255 33.333 0.00 0.00 0.00 4.92
5 6 7.011857 TGACATGGTCCAAAAACTAAAAATTGC 59.988 33.333 0.00 0.00 0.00 3.56
6 7 8.430801 TGACATGGTCCAAAAACTAAAAATTG 57.569 30.769 0.00 0.00 0.00 2.32
8 9 9.454859 TTTTGACATGGTCCAAAAACTAAAAAT 57.545 25.926 15.66 0.00 27.02 1.82
10 11 9.454859 AATTTTGACATGGTCCAAAAACTAAAA 57.545 25.926 19.42 0.60 32.46 1.52
14 15 9.625747 AATTAATTTTGACATGGTCCAAAAACT 57.374 25.926 19.42 14.42 32.46 2.66
107 108 2.540265 TTTTTGCCATGCCACGAAAT 57.460 40.000 0.00 0.00 0.00 2.17
216 234 3.527533 TGCCATGTTACCAAGACGATAC 58.472 45.455 0.00 0.00 0.00 2.24
380 1269 4.207019 GCACACACTAACACTGAAAAATGC 59.793 41.667 0.00 0.00 0.00 3.56
404 1293 8.599624 ATCATCCTTTGGAATAACTCACAAAT 57.400 30.769 0.00 0.00 34.34 2.32
475 1364 5.925506 TTGAATTCTTCATGGTGCATCAT 57.074 34.783 6.64 6.64 39.84 2.45
566 1540 3.818210 ACGCAACTTTGTACAATGATCCA 59.182 39.130 23.89 2.22 0.00 3.41
579 1553 1.890489 GGGGGTAATTGACGCAACTTT 59.110 47.619 0.00 0.00 42.75 2.66
680 1657 8.299262 CAAAGTTGATATTGGATCCGTACTAG 57.701 38.462 7.39 0.00 0.00 2.57
767 1750 8.737168 TCAATCTCTCAACTCTTTTCTTTTCA 57.263 30.769 0.00 0.00 0.00 2.69
1201 2205 1.605738 AGAGGTAGACGTTGGCGGT 60.606 57.895 0.00 0.00 43.45 5.68
1326 2330 2.343758 GAGCTGACGGTGAAGGCA 59.656 61.111 0.00 0.00 0.00 4.75
1378 2382 2.357517 CACCTGCCACACCTCGTC 60.358 66.667 0.00 0.00 0.00 4.20
1379 2383 4.626081 GCACCTGCCACACCTCGT 62.626 66.667 0.00 0.00 34.31 4.18
1389 2393 2.594592 AAGAACCCGTGCACCTGC 60.595 61.111 12.15 0.00 42.50 4.85
1584 2588 3.677648 CCGTCGAACACCTCCCGT 61.678 66.667 0.00 0.00 0.00 5.28
1586 2590 0.179119 CATACCGTCGAACACCTCCC 60.179 60.000 0.00 0.00 0.00 4.30
1663 2667 2.360350 CCTCGCCACACCAGCATT 60.360 61.111 0.00 0.00 0.00 3.56
1757 2761 2.490217 CTACCGAGTCAGCCCACG 59.510 66.667 0.00 0.00 0.00 4.94
1795 2799 2.281208 CGGCTGGAAACCCGTCAA 60.281 61.111 0.00 0.00 39.67 3.18
1812 2819 1.153509 GGCCATTGTTGCAGCATCC 60.154 57.895 3.36 0.13 0.00 3.51
1881 2888 0.692476 TGTGTAGAAGCCCATGCACT 59.308 50.000 0.00 0.00 41.13 4.40
1907 2914 3.253921 CACATGGCAGTTCATCTCAACAA 59.746 43.478 0.00 0.00 0.00 2.83
1911 2918 1.456296 GCACATGGCAGTTCATCTCA 58.544 50.000 0.00 0.00 43.97 3.27
2013 3020 5.121298 CACCATCACATTGTAAGAGACTGTG 59.879 44.000 0.00 0.00 36.18 3.66
2014 3021 5.012046 TCACCATCACATTGTAAGAGACTGT 59.988 40.000 0.00 0.00 0.00 3.55
2016 3023 5.247110 AGTCACCATCACATTGTAAGAGACT 59.753 40.000 0.00 0.00 0.00 3.24
2019 3026 4.093998 GCAGTCACCATCACATTGTAAGAG 59.906 45.833 0.00 0.00 0.00 2.85
2108 3115 4.783621 TCACTGCATCAGGCCGCC 62.784 66.667 0.00 0.00 43.89 6.13
2307 3317 0.892358 CACCTGCATGTGGCTTCACT 60.892 55.000 13.75 0.00 45.15 3.41
2448 5533 2.001361 GCCGGCTTCGAGCTAGTGTA 62.001 60.000 22.15 0.00 41.99 2.90
2465 5550 1.442526 CTCAACAGCATCCCATCGCC 61.443 60.000 0.00 0.00 0.00 5.54
2480 5568 5.631119 TCATCAGTCCTCGTATATCCTCAA 58.369 41.667 0.00 0.00 0.00 3.02
2481 5569 5.242795 TCATCAGTCCTCGTATATCCTCA 57.757 43.478 0.00 0.00 0.00 3.86
2482 5570 4.638421 CCTCATCAGTCCTCGTATATCCTC 59.362 50.000 0.00 0.00 0.00 3.71
2488 5576 1.499438 TCCCCTCATCAGTCCTCGTAT 59.501 52.381 0.00 0.00 0.00 3.06
2494 5582 1.213926 AGCATTTCCCCTCATCAGTCC 59.786 52.381 0.00 0.00 0.00 3.85
2513 5601 6.238593 GCTGAGCCCTATATCTTTTTCAACAG 60.239 42.308 0.00 0.00 0.00 3.16
2577 5665 2.061061 CTAGGATGGCTGAAATCCCCT 58.939 52.381 5.67 0.00 44.09 4.79
2633 5721 6.603997 TCTTAAGTCTTAGGTTGGTTGCAAAA 59.396 34.615 0.00 0.00 0.00 2.44
2687 5776 1.076332 GTTGTCCTGTCGCCATGTAC 58.924 55.000 0.00 0.00 0.00 2.90
2729 5818 9.778993 TCTTCTCATTAAAGTACGTGTATACAC 57.221 33.333 23.53 23.53 43.15 2.90
2779 5868 5.717119 ATTGGAACTACCCTAAGCTCATT 57.283 39.130 0.00 0.00 38.00 2.57
2906 9232 6.441274 ACACTGTTTGCATGTTTCTCTAATG 58.559 36.000 0.00 0.00 0.00 1.90
2972 9358 6.604396 TCATCGACCAAACCTATACTCTTGTA 59.396 38.462 0.00 0.00 0.00 2.41
2974 9360 5.902681 TCATCGACCAAACCTATACTCTTG 58.097 41.667 0.00 0.00 0.00 3.02
2975 9361 6.380274 TCTTCATCGACCAAACCTATACTCTT 59.620 38.462 0.00 0.00 0.00 2.85
2978 9364 5.903810 GTCTTCATCGACCAAACCTATACT 58.096 41.667 0.00 0.00 0.00 2.12
3001 9396 3.551846 GATTACATGTACTTGGTGGGGG 58.448 50.000 4.68 0.00 0.00 5.40
3035 9430 2.466870 TTTTGCTGTACAGTGTTGCG 57.533 45.000 23.44 0.00 0.00 4.85
3059 9466 3.560025 CCACAACAGGAGACAGGCTAAAT 60.560 47.826 0.00 0.00 0.00 1.40
3077 9484 5.938125 GCTTACCTTAATCAGACTTTCCACA 59.062 40.000 0.00 0.00 0.00 4.17
3088 9546 8.609176 CGCAAAGTAAATAGCTTACCTTAATCA 58.391 33.333 0.00 0.00 40.84 2.57
3113 9619 3.971871 ACATAAATTGTTCACAACGCACG 59.028 39.130 0.00 0.00 38.86 5.34
3148 9654 6.884187 TCTGTTTTTCTATGCACGTTTCTAC 58.116 36.000 0.00 0.00 0.00 2.59
3151 9657 6.427150 TCTTCTGTTTTTCTATGCACGTTTC 58.573 36.000 0.00 0.00 0.00 2.78
3167 9673 7.781548 TTTAGTAAAGCTCGTTTCTTCTGTT 57.218 32.000 0.00 0.00 0.00 3.16
3203 9865 8.414629 AGACTGCATAGGAAAAAGAAAGAAAT 57.585 30.769 0.00 0.00 0.00 2.17
3227 9889 5.997129 ACCCCATTGAAATAAAACAAGCAAG 59.003 36.000 0.00 0.00 0.00 4.01
3256 9918 5.813157 TGAATTTATGATGCATTGCCAGTTG 59.187 36.000 6.12 0.00 0.00 3.16
3305 9967 7.592533 GCACCATGTATGCTATGTAAATTTCAG 59.407 37.037 11.05 0.00 40.08 3.02
3347 10009 6.421501 ACAACACTCATATGCAACACAAATTG 59.578 34.615 0.00 0.00 0.00 2.32
3348 10010 6.514947 ACAACACTCATATGCAACACAAATT 58.485 32.000 0.00 0.00 0.00 1.82
3404 10066 2.205022 ACCAGTTGACACCATCATGG 57.795 50.000 0.54 0.54 45.02 3.66
3435 10098 8.462811 TCTGTTACACAAGCTAATCAAAACAAA 58.537 29.630 0.00 0.00 0.00 2.83
3448 10111 5.229921 TGTTTTCACTCTGTTACACAAGC 57.770 39.130 0.00 0.00 0.00 4.01
3524 10187 2.500504 AGAATGGGGAAACGGTAGAGAC 59.499 50.000 0.00 0.00 0.00 3.36
3532 10195 5.897377 ACTTATTGAAGAATGGGGAAACG 57.103 39.130 0.00 0.00 36.45 3.60
3553 10216 6.640499 TGCACATTTGTTCAAGTTGCTATAAC 59.360 34.615 0.00 0.00 30.43 1.89



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.