Multiple sequence alignment - TraesCS6B01G368700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G368700 chr6B 100.000 4917 0 0 1 4917 642914733 642919649 0.000000e+00 9081.0
1 TraesCS6B01G368700 chr6D 88.562 2684 170 57 2206 4843 427089645 427092237 0.000000e+00 3129.0
2 TraesCS6B01G368700 chr6D 91.517 1556 102 24 1 1545 427087233 427088769 0.000000e+00 2115.0
3 TraesCS6B01G368700 chr6D 90.461 608 51 6 1616 2219 427088803 427089407 0.000000e+00 795.0
4 TraesCS6B01G368700 chr6D 86.550 171 18 4 1934 2103 427088985 427089151 3.020000e-42 183.0
5 TraesCS6B01G368700 chr6A 90.156 1991 121 29 2592 4545 571796997 571798949 0.000000e+00 2521.0
6 TraesCS6B01G368700 chr6A 90.127 1570 88 28 1 1539 571794538 571796071 0.000000e+00 1978.0
7 TraesCS6B01G368700 chr6A 88.104 807 56 23 1620 2418 571796120 571796894 0.000000e+00 922.0
8 TraesCS6B01G368700 chr6A 90.341 176 10 3 4598 4766 571798956 571799131 1.780000e-54 224.0
9 TraesCS6B01G368700 chr6A 95.238 42 2 0 4787 4828 571799170 571799211 3.180000e-07 67.6
10 TraesCS6B01G368700 chr6A 97.222 36 0 1 2409 2443 606033271 606033306 5.320000e-05 60.2
11 TraesCS6B01G368700 chr3A 86.449 214 28 1 1003 1216 116518972 116519184 2.960000e-57 233.0
12 TraesCS6B01G368700 chr3A 84.848 66 9 1 272 336 678348269 678348204 1.140000e-06 65.8
13 TraesCS6B01G368700 chr3D 85.981 214 29 1 1003 1216 98871944 98872156 1.380000e-55 228.0
14 TraesCS6B01G368700 chr3D 95.238 42 0 2 2404 2443 412105104 412105145 1.140000e-06 65.8
15 TraesCS6B01G368700 chr3D 83.077 65 6 4 2415 2474 5653745 5653681 2.000000e-03 54.7
16 TraesCS6B01G368700 chr3B 85.981 214 29 1 1003 1216 149453773 149453985 1.380000e-55 228.0
17 TraesCS6B01G368700 chr3B 89.796 49 3 2 2402 2449 318658621 318658668 1.480000e-05 62.1
18 TraesCS6B01G368700 chr3B 93.023 43 2 1 2408 2449 528078248 528078206 1.480000e-05 62.1
19 TraesCS6B01G368700 chr7A 84.348 230 34 2 1008 1237 519131139 519131366 1.780000e-54 224.0
20 TraesCS6B01G368700 chr7D 85.366 205 30 0 1008 1212 476689884 476689680 3.860000e-51 213.0
21 TraesCS6B01G368700 chr7D 93.333 75 5 0 4843 4917 156806562 156806488 1.450000e-20 111.0
22 TraesCS6B01G368700 chr7B 85.366 205 30 0 1008 1212 500732710 500732506 3.860000e-51 213.0
23 TraesCS6B01G368700 chr2D 84.343 198 31 0 1015 1212 151325830 151326027 1.400000e-45 195.0
24 TraesCS6B01G368700 chr1A 89.262 149 13 3 2600 2748 62389890 62390035 3.020000e-42 183.0
25 TraesCS6B01G368700 chr1A 81.148 122 17 6 4372 4490 14503931 14503813 5.240000e-15 93.5
26 TraesCS6B01G368700 chr4A 80.488 164 27 5 4346 4506 106343813 106343652 2.400000e-23 121.0
27 TraesCS6B01G368700 chr4B 79.675 123 18 5 2052 2172 666238686 666238803 1.130000e-11 82.4
28 TraesCS6B01G368700 chr5B 97.500 40 0 1 4548 4586 61893988 61894027 3.180000e-07 67.6
29 TraesCS6B01G368700 chr5B 84.058 69 6 4 2410 2475 376335586 376335652 1.480000e-05 62.1
30 TraesCS6B01G368700 chr1D 91.489 47 2 2 2403 2447 257365366 257365412 4.110000e-06 63.9
31 TraesCS6B01G368700 chr1D 89.362 47 4 1 2408 2453 57502493 57502447 1.910000e-04 58.4
32 TraesCS6B01G368700 chr5D 97.222 36 0 1 2409 2443 350331680 350331715 5.320000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G368700 chr6B 642914733 642919649 4916 False 9081.00 9081 100.0000 1 4917 1 chr6B.!!$F1 4916
1 TraesCS6B01G368700 chr6D 427087233 427092237 5004 False 1555.50 3129 89.2725 1 4843 4 chr6D.!!$F1 4842
2 TraesCS6B01G368700 chr6A 571794538 571799211 4673 False 1142.52 2521 90.7932 1 4828 5 chr6A.!!$F2 4827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 808 0.040425 GGCCAATTATTACCGCGCAG 60.040 55.0 8.75 0.0 0.00 5.18 F
1812 1854 0.035439 ATCTCCCGTGAAAATGCCGT 60.035 50.0 0.00 0.0 0.00 5.68 F
2978 3301 0.038343 ATGCATTTGTCCGGCAACAC 60.038 50.0 10.30 0.0 41.43 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2261 0.106967 GCAGAAGACCCCCTCATTCC 60.107 60.0 0.00 0.00 0.00 3.01 R
3224 3567 0.034616 CCCTCATAGTAGCTGCTGCC 59.965 60.0 15.31 2.53 40.80 4.85 R
4889 5285 0.032678 CTCCAGCGTAATCCAGCGAT 59.967 55.0 0.00 0.00 38.61 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
551 556 1.537202 CCTCCGGAAGCTTCACAAAAG 59.463 52.381 27.02 15.38 0.00 2.27
657 662 5.463061 CGGCCCATTAGCAAAATAAATCTTG 59.537 40.000 0.00 0.00 0.00 3.02
664 669 4.095610 AGCAAAATAAATCTTGTACGCGC 58.904 39.130 5.73 0.00 0.00 6.86
666 671 4.557301 GCAAAATAAATCTTGTACGCGCTT 59.443 37.500 5.73 0.00 0.00 4.68
671 676 1.790755 ATCTTGTACGCGCTTTGACA 58.209 45.000 5.73 0.00 0.00 3.58
706 711 3.728279 GATACGACGGGCCCACCAC 62.728 68.421 24.92 8.52 40.22 4.16
721 726 2.368594 CACCCCTCCTCCCAGCTA 59.631 66.667 0.00 0.00 0.00 3.32
753 759 2.741092 GGGGCGATCGGCTATGAA 59.259 61.111 36.05 0.00 42.94 2.57
763 769 0.742990 CGGCTATGAACGCCTTCCAA 60.743 55.000 0.00 0.00 45.37 3.53
766 772 1.132453 GCTATGAACGCCTTCCAAACC 59.868 52.381 0.00 0.00 0.00 3.27
792 798 3.537580 TCGCTTTAACTCGGCCAATTAT 58.462 40.909 2.24 0.00 0.00 1.28
802 808 0.040425 GGCCAATTATTACCGCGCAG 60.040 55.000 8.75 0.00 0.00 5.18
828 834 1.149133 AACCCTGCCCTTCATCCCTT 61.149 55.000 0.00 0.00 0.00 3.95
829 835 1.076485 CCCTGCCCTTCATCCCTTG 60.076 63.158 0.00 0.00 0.00 3.61
830 836 1.755783 CCTGCCCTTCATCCCTTGC 60.756 63.158 0.00 0.00 0.00 4.01
831 837 1.305623 CTGCCCTTCATCCCTTGCT 59.694 57.895 0.00 0.00 0.00 3.91
859 865 2.282958 ACGACCTTCGAGGGCAGA 60.283 61.111 14.47 0.00 46.60 4.26
916 922 2.195123 TTTTTAAGCAGAGCGGCGGC 62.195 55.000 9.78 8.43 39.27 6.53
965 973 2.202544 GAGCTCCGCACTCTGACG 60.203 66.667 0.87 0.00 0.00 4.35
970 978 2.125912 CCGCACTCTGACGGGAAG 60.126 66.667 0.00 0.00 45.74 3.46
971 979 2.636412 CCGCACTCTGACGGGAAGA 61.636 63.158 0.00 0.00 45.74 2.87
973 981 1.587043 CGCACTCTGACGGGAAGAGA 61.587 60.000 15.57 0.00 43.27 3.10
976 984 1.742831 CACTCTGACGGGAAGAGAGAG 59.257 57.143 15.57 0.00 43.27 3.20
977 985 1.631388 ACTCTGACGGGAAGAGAGAGA 59.369 52.381 15.57 0.00 43.27 3.10
978 986 2.288666 CTCTGACGGGAAGAGAGAGAG 58.711 57.143 5.60 0.00 43.27 3.20
979 987 1.909986 TCTGACGGGAAGAGAGAGAGA 59.090 52.381 0.00 0.00 0.00 3.10
980 988 2.093181 TCTGACGGGAAGAGAGAGAGAG 60.093 54.545 0.00 0.00 0.00 3.20
999 1017 1.010793 AGAGAGAGAGAGGAGAGGGGA 59.989 57.143 0.00 0.00 0.00 4.81
1243 1267 0.400213 TCCCTCCGTGCAAACTCATT 59.600 50.000 0.00 0.00 0.00 2.57
1349 1384 0.962356 AATTCTTGCCGAGCTGTGGG 60.962 55.000 0.00 0.00 0.00 4.61
1358 1393 1.657751 CGAGCTGTGGGACGATCTGA 61.658 60.000 0.00 0.00 0.00 3.27
1359 1394 0.749649 GAGCTGTGGGACGATCTGAT 59.250 55.000 0.00 0.00 0.00 2.90
1362 1397 2.968574 AGCTGTGGGACGATCTGATATT 59.031 45.455 0.00 0.00 0.00 1.28
1365 1400 3.576118 CTGTGGGACGATCTGATATTCCT 59.424 47.826 13.85 0.00 0.00 3.36
1370 1405 4.524714 GGGACGATCTGATATTCCTTCTCA 59.475 45.833 13.85 0.00 0.00 3.27
1471 1506 2.483188 GGATTGAGCCGTAGATTTCCGT 60.483 50.000 0.00 0.00 0.00 4.69
1516 1551 4.808364 TGGTTTGCTTTGATTTCCTTTTCG 59.192 37.500 0.00 0.00 0.00 3.46
1546 1585 4.469469 TTCTCCCTTCAATGGTTCCTTT 57.531 40.909 0.00 0.00 0.00 3.11
1547 1586 4.469469 TCTCCCTTCAATGGTTCCTTTT 57.531 40.909 0.00 0.00 0.00 2.27
1548 1587 4.407365 TCTCCCTTCAATGGTTCCTTTTC 58.593 43.478 0.00 0.00 0.00 2.29
1549 1588 4.106341 TCTCCCTTCAATGGTTCCTTTTCT 59.894 41.667 0.00 0.00 0.00 2.52
1550 1589 4.814967 TCCCTTCAATGGTTCCTTTTCTT 58.185 39.130 0.00 0.00 0.00 2.52
1551 1590 4.588528 TCCCTTCAATGGTTCCTTTTCTTG 59.411 41.667 0.00 0.00 0.00 3.02
1552 1591 4.588528 CCCTTCAATGGTTCCTTTTCTTGA 59.411 41.667 0.00 0.00 0.00 3.02
1553 1592 5.246883 CCCTTCAATGGTTCCTTTTCTTGAT 59.753 40.000 0.00 0.00 0.00 2.57
1554 1593 6.393171 CCTTCAATGGTTCCTTTTCTTGATC 58.607 40.000 0.00 0.00 0.00 2.92
1555 1594 5.982890 TCAATGGTTCCTTTTCTTGATCC 57.017 39.130 0.00 0.00 0.00 3.36
1556 1595 5.644188 TCAATGGTTCCTTTTCTTGATCCT 58.356 37.500 0.00 0.00 0.00 3.24
1558 1597 6.554605 TCAATGGTTCCTTTTCTTGATCCTTT 59.445 34.615 0.00 0.00 0.00 3.11
1562 1601 7.237982 TGGTTCCTTTTCTTGATCCTTTATCA 58.762 34.615 0.00 0.00 43.03 2.15
1563 1602 7.176690 TGGTTCCTTTTCTTGATCCTTTATCAC 59.823 37.037 0.00 0.00 44.42 3.06
1565 1604 7.032598 TCCTTTTCTTGATCCTTTATCACCT 57.967 36.000 0.00 0.00 44.42 4.00
1567 1606 8.267894 TCCTTTTCTTGATCCTTTATCACCTAG 58.732 37.037 0.00 0.00 44.42 3.02
1568 1607 7.500559 CCTTTTCTTGATCCTTTATCACCTAGG 59.499 40.741 7.41 7.41 44.42 3.02
1569 1608 7.510675 TTTCTTGATCCTTTATCACCTAGGT 57.489 36.000 9.21 9.21 44.42 3.08
1570 1609 6.732896 TCTTGATCCTTTATCACCTAGGTC 57.267 41.667 12.84 0.00 44.42 3.85
1572 1611 4.543689 TGATCCTTTATCACCTAGGTCGT 58.456 43.478 12.84 6.10 39.77 4.34
1573 1612 4.583489 TGATCCTTTATCACCTAGGTCGTC 59.417 45.833 12.84 0.82 39.77 4.20
1574 1613 4.246712 TCCTTTATCACCTAGGTCGTCT 57.753 45.455 12.84 0.00 0.00 4.18
1576 1615 3.952323 CCTTTATCACCTAGGTCGTCTCA 59.048 47.826 12.84 0.00 0.00 3.27
1577 1616 4.585162 CCTTTATCACCTAGGTCGTCTCAT 59.415 45.833 12.84 0.11 0.00 2.90
1578 1617 5.278561 CCTTTATCACCTAGGTCGTCTCATC 60.279 48.000 12.84 0.00 0.00 2.92
1579 1618 2.054232 TCACCTAGGTCGTCTCATCC 57.946 55.000 12.84 0.00 0.00 3.51
1582 1621 1.340795 ACCTAGGTCGTCTCATCCGTT 60.341 52.381 9.21 0.00 0.00 4.44
1583 1622 1.334243 CCTAGGTCGTCTCATCCGTTC 59.666 57.143 0.00 0.00 0.00 3.95
1584 1623 1.334243 CTAGGTCGTCTCATCCGTTCC 59.666 57.143 0.00 0.00 0.00 3.62
1585 1624 1.141234 GGTCGTCTCATCCGTTCCC 59.859 63.158 0.00 0.00 0.00 3.97
1586 1625 1.321074 GGTCGTCTCATCCGTTCCCT 61.321 60.000 0.00 0.00 0.00 4.20
1587 1626 0.179134 GTCGTCTCATCCGTTCCCTG 60.179 60.000 0.00 0.00 0.00 4.45
1588 1627 1.519455 CGTCTCATCCGTTCCCTGC 60.519 63.158 0.00 0.00 0.00 4.85
1589 1628 1.519455 GTCTCATCCGTTCCCTGCG 60.519 63.158 0.00 0.00 0.00 5.18
1590 1629 1.680989 TCTCATCCGTTCCCTGCGA 60.681 57.895 0.00 0.00 0.00 5.10
1591 1630 1.227089 CTCATCCGTTCCCTGCGAG 60.227 63.158 0.00 0.00 0.00 5.03
1592 1631 1.667154 CTCATCCGTTCCCTGCGAGA 61.667 60.000 0.00 0.00 0.00 4.04
1593 1632 1.043116 TCATCCGTTCCCTGCGAGAT 61.043 55.000 0.00 0.00 0.00 2.75
1594 1633 0.179073 CATCCGTTCCCTGCGAGATT 60.179 55.000 0.00 0.00 0.00 2.40
1595 1634 0.541863 ATCCGTTCCCTGCGAGATTT 59.458 50.000 0.00 0.00 0.00 2.17
1596 1635 0.391130 TCCGTTCCCTGCGAGATTTG 60.391 55.000 0.00 0.00 0.00 2.32
1597 1636 0.391130 CCGTTCCCTGCGAGATTTGA 60.391 55.000 0.00 0.00 0.00 2.69
1598 1637 1.002366 CGTTCCCTGCGAGATTTGAG 58.998 55.000 0.00 0.00 0.00 3.02
1599 1638 1.404181 CGTTCCCTGCGAGATTTGAGA 60.404 52.381 0.00 0.00 0.00 3.27
1600 1639 2.003301 GTTCCCTGCGAGATTTGAGAC 58.997 52.381 0.00 0.00 0.00 3.36
1601 1640 1.561643 TCCCTGCGAGATTTGAGACT 58.438 50.000 0.00 0.00 0.00 3.24
1602 1641 1.478510 TCCCTGCGAGATTTGAGACTC 59.521 52.381 0.00 0.00 0.00 3.36
1603 1642 1.472376 CCCTGCGAGATTTGAGACTCC 60.472 57.143 0.00 0.00 0.00 3.85
1604 1643 1.472376 CCTGCGAGATTTGAGACTCCC 60.472 57.143 0.00 0.00 0.00 4.30
1605 1644 1.480137 CTGCGAGATTTGAGACTCCCT 59.520 52.381 0.00 0.00 0.00 4.20
1606 1645 1.902508 TGCGAGATTTGAGACTCCCTT 59.097 47.619 0.00 0.00 0.00 3.95
1607 1646 2.093973 TGCGAGATTTGAGACTCCCTTC 60.094 50.000 0.00 0.00 0.00 3.46
1608 1647 2.167487 GCGAGATTTGAGACTCCCTTCT 59.833 50.000 0.00 0.00 0.00 2.85
1609 1648 3.368948 GCGAGATTTGAGACTCCCTTCTT 60.369 47.826 0.00 0.00 0.00 2.52
1610 1649 4.142138 GCGAGATTTGAGACTCCCTTCTTA 60.142 45.833 0.00 0.00 0.00 2.10
1611 1650 5.452636 GCGAGATTTGAGACTCCCTTCTTAT 60.453 44.000 0.00 0.00 0.00 1.73
1612 1651 5.982516 CGAGATTTGAGACTCCCTTCTTATG 59.017 44.000 0.00 0.00 0.00 1.90
1613 1652 6.406400 CGAGATTTGAGACTCCCTTCTTATGT 60.406 42.308 0.00 0.00 0.00 2.29
1614 1653 7.264294 AGATTTGAGACTCCCTTCTTATGTT 57.736 36.000 0.00 0.00 0.00 2.71
1615 1654 7.694093 AGATTTGAGACTCCCTTCTTATGTTT 58.306 34.615 0.00 0.00 0.00 2.83
1616 1655 7.609532 AGATTTGAGACTCCCTTCTTATGTTTG 59.390 37.037 0.00 0.00 0.00 2.93
1617 1656 4.579869 TGAGACTCCCTTCTTATGTTTGC 58.420 43.478 0.00 0.00 0.00 3.68
1618 1657 4.041567 TGAGACTCCCTTCTTATGTTTGCA 59.958 41.667 0.00 0.00 0.00 4.08
1708 1748 8.046708 TGTTTCCAAGCAAAAGCTATAGATAGA 58.953 33.333 3.21 0.00 32.05 1.98
1740 1780 1.202143 GCGTATTGCTTCTTTTCCCCG 60.202 52.381 0.00 0.00 41.73 5.73
1756 1796 1.070289 CCCCGTATTAAGTGAGGAGGC 59.930 57.143 0.00 0.00 0.00 4.70
1772 1812 3.117663 AGGAGGCCTGTAAAGTTTTGTGA 60.118 43.478 12.00 0.00 29.57 3.58
1812 1854 0.035439 ATCTCCCGTGAAAATGCCGT 60.035 50.000 0.00 0.00 0.00 5.68
1820 1862 2.286772 CGTGAAAATGCCGTTATAGCCC 60.287 50.000 0.00 0.00 0.00 5.19
1843 1885 2.803492 GCTATAGTTGTTGGGAGCCTCG 60.803 54.545 0.84 0.00 0.00 4.63
1846 1888 3.565214 TTGTTGGGAGCCTCGGCA 61.565 61.111 11.02 0.00 44.88 5.69
1883 1928 2.417719 GCGAAATGCTCCGAATATCCT 58.582 47.619 0.00 0.00 41.73 3.24
1915 1960 6.093495 CGATCCAAAGTTCAGCAATAACCTAA 59.907 38.462 0.00 0.00 0.00 2.69
1933 1978 5.346270 ACCTAAAGAAATCCTCTCTCCTGT 58.654 41.667 0.00 0.00 31.02 4.00
1957 2002 3.938963 CAGAAAAGTTTCCGCTATAGCCA 59.061 43.478 19.00 2.96 37.92 4.75
1964 2009 4.527038 AGTTTCCGCTATAGCCAGCTATAA 59.473 41.667 19.00 4.70 39.94 0.98
2004 2049 2.749839 GCTATGGCCACAACCGCA 60.750 61.111 8.16 0.00 0.00 5.69
2031 2076 1.557443 CCGAATATCCCGCTGAACGC 61.557 60.000 0.00 0.00 41.76 4.84
2037 2082 0.753262 ATCCCGCTGAACGCTCTAAT 59.247 50.000 0.00 0.00 41.76 1.73
2146 2191 4.796231 CGGAGAGAACCCGCCGTG 62.796 72.222 0.00 0.00 43.09 4.94
2156 2201 0.808755 ACCCGCCGTGAAATCATTTC 59.191 50.000 2.87 2.87 40.08 2.17
2214 2261 5.096443 AGGAGATTTGCTCTTACTTGAGG 57.904 43.478 0.00 0.00 43.43 3.86
2219 2266 5.884792 AGATTTGCTCTTACTTGAGGGAATG 59.115 40.000 0.00 0.00 34.82 2.67
2220 2267 4.908601 TTGCTCTTACTTGAGGGAATGA 57.091 40.909 0.00 0.00 34.82 2.57
2230 2529 0.840617 GAGGGAATGAGGGGGTCTTC 59.159 60.000 0.00 0.00 0.00 2.87
2245 2544 4.080863 GGGGTCTTCTGCTATTCTTCTTGA 60.081 45.833 0.00 0.00 0.00 3.02
2250 2549 7.264221 GTCTTCTGCTATTCTTCTTGATCTCA 58.736 38.462 0.00 0.00 0.00 3.27
2251 2550 7.222611 GTCTTCTGCTATTCTTCTTGATCTCAC 59.777 40.741 0.00 0.00 0.00 3.51
2289 2588 4.083484 CGTGTCTTTTTAGGCAAGTAAGGG 60.083 45.833 0.00 0.00 0.00 3.95
2364 2663 3.806521 GCTATGCATCGAATCTGTTCACT 59.193 43.478 0.19 0.00 33.86 3.41
2436 2739 5.701290 CCCCCTGTAAAGAAATATAAGAGCG 59.299 44.000 0.00 0.00 0.00 5.03
2437 2740 6.289064 CCCCTGTAAAGAAATATAAGAGCGT 58.711 40.000 0.00 0.00 0.00 5.07
2438 2741 6.766467 CCCCTGTAAAGAAATATAAGAGCGTT 59.234 38.462 0.00 0.00 0.00 4.84
2439 2742 7.282450 CCCCTGTAAAGAAATATAAGAGCGTTT 59.718 37.037 0.00 0.00 0.00 3.60
2440 2743 9.321562 CCCTGTAAAGAAATATAAGAGCGTTTA 57.678 33.333 0.00 0.00 0.00 2.01
2504 2807 3.273434 AGTAGACGTACGTGCTTGGATA 58.727 45.455 28.16 4.60 33.97 2.59
2530 2834 1.806542 GTTCATGCGAGAGAAAAGGCA 59.193 47.619 0.00 0.00 40.06 4.75
2540 2844 4.938226 CGAGAGAAAAGGCAGGTAAAGAAT 59.062 41.667 0.00 0.00 0.00 2.40
2541 2845 5.064071 CGAGAGAAAAGGCAGGTAAAGAATC 59.936 44.000 0.00 0.00 0.00 2.52
2545 2849 7.121907 AGAGAAAAGGCAGGTAAAGAATCAATC 59.878 37.037 0.00 0.00 0.00 2.67
2568 2872 1.601166 GGGACAAAAGTTAGTGGCGT 58.399 50.000 0.00 0.00 0.00 5.68
2602 2906 0.313043 GCATATGGGCAGTGCATGAC 59.687 55.000 18.61 4.43 38.68 3.06
2667 2971 2.814336 GGCTTTGATTTCAGAAGACCGT 59.186 45.455 6.65 0.00 0.00 4.83
2754 3062 3.745975 TCAGCCTTTATGAAAGTGTGTCG 59.254 43.478 0.00 0.00 36.77 4.35
2790 3098 2.480224 TTGCGACGGCTGTACTATAC 57.520 50.000 0.00 0.00 40.82 1.47
2886 3194 3.134804 GCTGGTATGGAAGGAGTACACAT 59.865 47.826 0.00 0.00 0.00 3.21
2915 3230 7.504574 TGCATGTAGTAACATAGACTAGGCTTA 59.495 37.037 1.68 0.00 44.70 3.09
2923 3238 8.955388 GTAACATAGACTAGGCTTATACCTACC 58.045 40.741 1.68 0.00 41.50 3.18
2928 3243 7.261688 AGACTAGGCTTATACCTACCTCTAG 57.738 44.000 0.00 0.00 41.50 2.43
2930 3245 6.781943 ACTAGGCTTATACCTACCTCTAGTG 58.218 44.000 0.00 0.00 41.50 2.74
2933 3256 3.510753 GCTTATACCTACCTCTAGTGCCC 59.489 52.174 0.00 0.00 0.00 5.36
2937 3260 1.078989 ACCTACCTCTAGTGCCCAGTT 59.921 52.381 0.00 0.00 0.00 3.16
2970 3293 3.886505 TCCCGGTAAATATGCATTTGTCC 59.113 43.478 3.54 2.02 35.88 4.02
2971 3294 3.304391 CCCGGTAAATATGCATTTGTCCG 60.304 47.826 3.54 13.07 43.90 4.79
2972 3295 3.884169 CGGTAAATATGCATTTGTCCGG 58.116 45.455 3.54 0.00 42.47 5.14
2974 3297 3.067461 GGTAAATATGCATTTGTCCGGCA 59.933 43.478 3.54 0.00 42.43 5.69
2975 3298 3.883830 AAATATGCATTTGTCCGGCAA 57.116 38.095 3.54 1.09 41.43 4.52
2976 3299 2.869233 ATATGCATTTGTCCGGCAAC 57.131 45.000 3.54 0.00 41.43 4.17
2978 3301 0.038343 ATGCATTTGTCCGGCAACAC 60.038 50.000 10.30 0.00 41.43 3.32
2979 3302 1.361993 GCATTTGTCCGGCAACACA 59.638 52.632 10.30 0.14 36.72 3.72
2980 3303 0.939106 GCATTTGTCCGGCAACACAC 60.939 55.000 10.30 0.00 36.72 3.82
2988 3315 1.346395 TCCGGCAACACACTGTAATCT 59.654 47.619 0.00 0.00 0.00 2.40
2994 3321 3.362986 GCAACACACTGTAATCTCACACG 60.363 47.826 0.00 0.00 0.00 4.49
3009 3336 4.990543 TCACACGAATGAGATGTCAAAC 57.009 40.909 0.00 0.00 35.88 2.93
3015 3344 7.167968 CACACGAATGAGATGTCAAACAAAATT 59.832 33.333 0.00 0.00 35.88 1.82
3020 3349 8.945481 AATGAGATGTCAAACAAAATTCACAA 57.055 26.923 0.00 0.00 35.88 3.33
3026 3360 7.288317 TGTCAAACAAAATTCACAATGTCAC 57.712 32.000 0.00 0.00 0.00 3.67
3034 3368 4.818534 ATTCACAATGTCACACACTCAC 57.181 40.909 0.00 0.00 0.00 3.51
3038 3372 4.119136 CACAATGTCACACACTCACACTA 58.881 43.478 0.00 0.00 0.00 2.74
3060 3394 9.410556 CACTAACTTATTCATTTTTCAGGGTTG 57.589 33.333 0.00 0.00 0.00 3.77
3072 3406 3.376918 GGGTTGCAAGCCTCCAGC 61.377 66.667 34.87 11.98 43.15 4.85
3165 3499 4.462280 GGCCCCGTACAACCCGAG 62.462 72.222 0.00 0.00 0.00 4.63
3166 3500 4.462280 GCCCCGTACAACCCGAGG 62.462 72.222 0.00 0.00 0.00 4.63
3167 3501 3.777910 CCCCGTACAACCCGAGGG 61.778 72.222 6.63 6.63 41.68 4.30
3168 3502 4.462280 CCCGTACAACCCGAGGGC 62.462 72.222 8.33 0.00 39.32 5.19
3169 3503 3.697747 CCGTACAACCCGAGGGCA 61.698 66.667 8.33 0.00 39.32 5.36
3170 3504 2.125673 CGTACAACCCGAGGGCAG 60.126 66.667 8.33 3.43 39.32 4.85
3171 3505 2.267961 GTACAACCCGAGGGCAGG 59.732 66.667 8.33 0.34 39.32 4.85
3334 3677 0.310232 GATACTCGCCCCACTCGTAC 59.690 60.000 0.00 0.00 0.00 3.67
3335 3678 1.442526 ATACTCGCCCCACTCGTACG 61.443 60.000 9.53 9.53 0.00 3.67
3336 3679 2.520465 TACTCGCCCCACTCGTACGA 62.520 60.000 18.41 18.41 0.00 3.43
3413 3756 2.283101 GCATGCCCCACCTCAACA 60.283 61.111 6.36 0.00 0.00 3.33
3438 3781 2.125961 GGGGCGAGTATCCGAGTGT 61.126 63.158 0.00 0.00 0.00 3.55
3461 3804 3.645660 TCCAGCCGCCATGGTTCA 61.646 61.111 14.67 0.00 41.21 3.18
3511 3854 1.483595 CCTCTCTGCCCAACTCCACA 61.484 60.000 0.00 0.00 0.00 4.17
3520 3863 1.362717 CAACTCCACACCGTCGAGT 59.637 57.895 0.00 0.00 35.67 4.18
3583 3932 2.361119 CTCCGGTTTCCAGATATCGTCA 59.639 50.000 0.00 0.00 0.00 4.35
3750 4099 1.024046 CATGGCGACGTCCAAATGGA 61.024 55.000 10.58 0.00 43.08 3.41
3752 4101 2.750888 GGCGACGTCCAAATGGAGC 61.751 63.158 10.58 4.57 46.49 4.70
3753 4102 2.032634 GCGACGTCCAAATGGAGCA 61.033 57.895 10.58 0.00 46.49 4.26
3757 4106 1.671054 CGTCCAAATGGAGCACCGT 60.671 57.895 1.47 0.00 46.49 4.83
3759 4108 0.605319 GTCCAAATGGAGCACCGTGA 60.605 55.000 1.47 0.00 46.49 4.35
3855 4204 4.819761 GTGCGCCTCGGATGAGCA 62.820 66.667 4.18 7.53 41.13 4.26
4077 4427 5.597813 TCTTTTTGCGAATTCTCTCTCAC 57.402 39.130 3.52 0.00 0.00 3.51
4234 4592 4.111255 TGTTTCCTGTGATTTCCATCCA 57.889 40.909 0.00 0.00 0.00 3.41
4276 4635 1.527034 CTCTTTTGGTGCAGCTGCTA 58.473 50.000 36.61 21.64 42.66 3.49
4304 4663 7.010023 CGAAGTTATGAAACACTTGCTAGTTC 58.990 38.462 0.00 0.00 38.12 3.01
4502 4865 5.544562 ACTTATATTTAGTGAGGGAGGGAGC 59.455 44.000 0.00 0.00 0.00 4.70
4505 4868 0.413832 TTAGTGAGGGAGGGAGCAGT 59.586 55.000 0.00 0.00 0.00 4.40
4506 4869 0.324738 TAGTGAGGGAGGGAGCAGTG 60.325 60.000 0.00 0.00 0.00 3.66
4518 4886 1.403514 GGAGCAGTGTCCTCTTCTTCG 60.404 57.143 4.93 0.00 33.30 3.79
4531 4899 6.981559 GTCCTCTTCTTCGTTTCATAGCTATT 59.018 38.462 2.64 0.00 0.00 1.73
4545 4913 5.357878 TCATAGCTATTTTGTTTGGGAGCAG 59.642 40.000 2.64 0.00 32.28 4.24
4548 4916 3.674410 GCTATTTTGTTTGGGAGCAGCTC 60.674 47.826 14.69 14.69 0.00 4.09
4550 4918 2.071778 TTTGTTTGGGAGCAGCTCTT 57.928 45.000 21.99 0.00 0.00 2.85
4563 4931 2.606551 GCAGCTCTTGAAACAGGCTTTC 60.607 50.000 0.00 0.00 0.00 2.62
4625 4994 6.587608 CAGGTGCCTGAATATTTTCTTTGTTC 59.412 38.462 12.66 0.00 46.30 3.18
4646 5015 7.004086 TGTTCCAGTCTATTGTTCCTTGAAAT 58.996 34.615 0.00 0.00 0.00 2.17
4653 5022 8.352942 AGTCTATTGTTCCTTGAAATGTTTGAC 58.647 33.333 0.00 0.00 0.00 3.18
4728 5104 4.473520 CCCGATCAACGCCCAGCT 62.474 66.667 0.00 0.00 41.07 4.24
4759 5135 2.364324 TGCTACTATCTAAGCCCAACCG 59.636 50.000 0.00 0.00 37.97 4.44
4823 5219 7.712797 TGTACATGACCACACACTATACATAG 58.287 38.462 0.00 0.00 36.46 2.23
4847 5243 5.957842 AAAAACTGCATAACCATCGAGAA 57.042 34.783 0.00 0.00 0.00 2.87
4848 5244 5.957842 AAAACTGCATAACCATCGAGAAA 57.042 34.783 0.00 0.00 0.00 2.52
4849 5245 5.957842 AAACTGCATAACCATCGAGAAAA 57.042 34.783 0.00 0.00 0.00 2.29
4850 5246 5.551760 AACTGCATAACCATCGAGAAAAG 57.448 39.130 0.00 0.00 0.00 2.27
4851 5247 3.375299 ACTGCATAACCATCGAGAAAAGC 59.625 43.478 0.00 0.00 0.00 3.51
4852 5248 2.351418 TGCATAACCATCGAGAAAAGCG 59.649 45.455 0.00 0.00 0.00 4.68
4853 5249 2.607635 GCATAACCATCGAGAAAAGCGA 59.392 45.455 0.00 0.00 42.48 4.93
4855 5251 4.260784 GCATAACCATCGAGAAAAGCGATT 60.261 41.667 0.00 0.00 45.29 3.34
4856 5252 5.435557 CATAACCATCGAGAAAAGCGATTC 58.564 41.667 0.00 0.00 45.29 2.52
4857 5253 3.252974 ACCATCGAGAAAAGCGATTCT 57.747 42.857 6.73 6.73 45.29 2.40
4858 5254 3.190874 ACCATCGAGAAAAGCGATTCTC 58.809 45.455 18.92 18.92 45.29 2.87
4865 5261 3.603532 AGAAAAGCGATTCTCTCATGCA 58.396 40.909 0.00 0.00 34.60 3.96
4866 5262 3.373439 AGAAAAGCGATTCTCTCATGCAC 59.627 43.478 0.00 0.00 34.60 4.57
4867 5263 1.284657 AAGCGATTCTCTCATGCACG 58.715 50.000 0.00 0.00 0.00 5.34
4868 5264 0.529337 AGCGATTCTCTCATGCACGG 60.529 55.000 0.00 0.00 0.00 4.94
4869 5265 0.807667 GCGATTCTCTCATGCACGGT 60.808 55.000 0.00 0.00 0.00 4.83
4870 5266 1.536072 GCGATTCTCTCATGCACGGTA 60.536 52.381 0.00 0.00 0.00 4.02
4871 5267 2.389059 CGATTCTCTCATGCACGGTAG 58.611 52.381 0.00 0.00 0.00 3.18
4872 5268 2.748605 GATTCTCTCATGCACGGTAGG 58.251 52.381 0.00 0.00 0.00 3.18
4873 5269 1.557099 TTCTCTCATGCACGGTAGGT 58.443 50.000 0.00 0.00 0.00 3.08
4874 5270 1.103803 TCTCTCATGCACGGTAGGTC 58.896 55.000 0.00 0.00 0.00 3.85
4875 5271 0.103208 CTCTCATGCACGGTAGGTCC 59.897 60.000 0.00 0.00 0.00 4.46
4876 5272 0.613572 TCTCATGCACGGTAGGTCCA 60.614 55.000 0.00 0.00 35.57 4.02
4877 5273 0.179100 CTCATGCACGGTAGGTCCAG 60.179 60.000 0.00 0.00 35.57 3.86
4878 5274 0.902984 TCATGCACGGTAGGTCCAGT 60.903 55.000 0.00 0.00 35.57 4.00
4879 5275 0.740868 CATGCACGGTAGGTCCAGTG 60.741 60.000 0.00 0.00 40.73 3.66
4881 5277 3.056458 CACGGTAGGTCCAGTGCA 58.944 61.111 0.00 0.00 35.38 4.57
4882 5278 1.596934 CACGGTAGGTCCAGTGCAT 59.403 57.895 0.00 0.00 35.38 3.96
4883 5279 0.740868 CACGGTAGGTCCAGTGCATG 60.741 60.000 0.00 0.00 35.38 4.06
4884 5280 1.815421 CGGTAGGTCCAGTGCATGC 60.815 63.158 11.82 11.82 35.57 4.06
4885 5281 1.299648 GGTAGGTCCAGTGCATGCA 59.700 57.895 18.46 18.46 35.97 3.96
4886 5282 0.107017 GGTAGGTCCAGTGCATGCAT 60.107 55.000 25.64 8.42 35.97 3.96
4887 5283 1.303309 GTAGGTCCAGTGCATGCATC 58.697 55.000 25.64 17.07 0.00 3.91
4888 5284 0.181114 TAGGTCCAGTGCATGCATCC 59.819 55.000 25.64 19.34 0.00 3.51
4889 5285 1.378911 GGTCCAGTGCATGCATCCA 60.379 57.895 25.64 5.54 0.00 3.41
4890 5286 0.754217 GGTCCAGTGCATGCATCCAT 60.754 55.000 25.64 7.76 0.00 3.41
4891 5287 0.666913 GTCCAGTGCATGCATCCATC 59.333 55.000 25.64 10.61 0.00 3.51
4892 5288 0.816421 TCCAGTGCATGCATCCATCG 60.816 55.000 25.64 8.59 0.00 3.84
4893 5289 1.008881 CAGTGCATGCATCCATCGC 60.009 57.895 25.64 8.99 0.00 4.58
4894 5290 1.153025 AGTGCATGCATCCATCGCT 60.153 52.632 25.64 11.41 0.00 4.93
4895 5291 1.008881 GTGCATGCATCCATCGCTG 60.009 57.895 25.64 0.00 0.00 5.18
4896 5292 2.190841 TGCATGCATCCATCGCTGG 61.191 57.895 18.46 0.00 44.64 4.85
4903 5299 4.750460 TCCATCGCTGGATTACGC 57.250 55.556 3.28 0.00 46.95 4.42
4904 5300 2.124293 TCCATCGCTGGATTACGCT 58.876 52.632 3.28 0.00 46.95 5.07
4905 5301 0.249447 TCCATCGCTGGATTACGCTG 60.249 55.000 3.28 0.00 46.95 5.18
4906 5302 1.224069 CCATCGCTGGATTACGCTGG 61.224 60.000 0.00 0.00 46.37 4.85
4907 5303 0.249447 CATCGCTGGATTACGCTGGA 60.249 55.000 0.00 0.00 0.00 3.86
4908 5304 0.032678 ATCGCTGGATTACGCTGGAG 59.967 55.000 0.00 0.00 0.00 3.86
4909 5305 1.035385 TCGCTGGATTACGCTGGAGA 61.035 55.000 0.00 0.00 0.00 3.71
4910 5306 0.032678 CGCTGGATTACGCTGGAGAT 59.967 55.000 0.00 0.00 0.00 2.75
4911 5307 1.789506 GCTGGATTACGCTGGAGATC 58.210 55.000 0.00 0.00 0.00 2.75
4912 5308 1.606737 GCTGGATTACGCTGGAGATCC 60.607 57.143 0.00 0.00 38.80 3.36
4913 5309 0.673985 TGGATTACGCTGGAGATCCG 59.326 55.000 0.00 0.00 40.73 4.18
4914 5310 0.959553 GGATTACGCTGGAGATCCGA 59.040 55.000 0.00 0.00 39.43 4.55
4915 5311 1.068194 GGATTACGCTGGAGATCCGAG 60.068 57.143 0.00 0.00 39.43 4.63
4916 5312 1.609555 GATTACGCTGGAGATCCGAGT 59.390 52.381 0.00 0.68 39.43 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 171 7.077605 CGATTTGTTTTCTGAATTGACTAGCA 58.922 34.615 0.00 0.00 0.00 3.49
551 556 8.404000 AGATGTTAGATTCTTCATTCACATTGC 58.596 33.333 0.00 0.00 0.00 3.56
657 662 4.812308 GGTTGTCAAAGCGCGTAC 57.188 55.556 8.43 0.00 0.00 3.67
671 676 0.836400 ATCAGTGGGAGTGACCGGTT 60.836 55.000 9.42 0.00 40.11 4.44
706 711 2.066999 GTGTAGCTGGGAGGAGGGG 61.067 68.421 0.00 0.00 0.00 4.79
739 745 2.846918 GCGTTCATAGCCGATCGC 59.153 61.111 10.32 5.46 44.11 4.58
740 746 3.538841 GGCGTTCATAGCCGATCG 58.461 61.111 8.51 8.51 45.58 3.69
746 752 1.132453 GGTTTGGAAGGCGTTCATAGC 59.868 52.381 19.90 10.24 33.93 2.97
748 754 1.828979 GGGTTTGGAAGGCGTTCATA 58.171 50.000 19.90 6.38 33.93 2.15
753 759 2.814913 GATCCGGGTTTGGAAGGCGT 62.815 60.000 0.00 0.00 42.46 5.68
763 769 1.738030 CGAGTTAAAGCGATCCGGGTT 60.738 52.381 0.00 0.00 0.00 4.11
766 772 1.488261 GCCGAGTTAAAGCGATCCGG 61.488 60.000 0.00 0.00 38.58 5.14
792 798 0.460635 GTTGGTATCCTGCGCGGTAA 60.461 55.000 16.49 2.89 0.00 2.85
802 808 0.106669 GAAGGGCAGGGTTGGTATCC 60.107 60.000 0.00 0.00 0.00 2.59
845 851 1.684049 CCTCTCTGCCCTCGAAGGT 60.684 63.158 1.20 0.00 31.93 3.50
859 865 0.107848 CGGGTGGCGATTTTACCTCT 60.108 55.000 0.00 0.00 34.87 3.69
916 922 3.827898 GACTGGAGGAGGACGCGG 61.828 72.222 12.47 0.00 0.00 6.46
955 963 0.172352 CTCTCTTCCCGTCAGAGTGC 59.828 60.000 0.00 0.00 39.18 4.40
956 964 1.742831 CTCTCTCTTCCCGTCAGAGTG 59.257 57.143 0.00 0.00 39.18 3.51
957 965 1.631388 TCTCTCTCTTCCCGTCAGAGT 59.369 52.381 0.00 0.00 39.18 3.24
958 966 2.093181 TCTCTCTCTCTTCCCGTCAGAG 60.093 54.545 0.00 0.00 39.45 3.35
959 967 1.909986 TCTCTCTCTCTTCCCGTCAGA 59.090 52.381 0.00 0.00 0.00 3.27
961 969 1.909986 TCTCTCTCTCTCTTCCCGTCA 59.090 52.381 0.00 0.00 0.00 4.35
965 973 3.711704 TCTCTCTCTCTCTCTCTCTTCCC 59.288 52.174 0.00 0.00 0.00 3.97
966 974 4.651503 TCTCTCTCTCTCTCTCTCTCTTCC 59.348 50.000 0.00 0.00 0.00 3.46
967 975 5.221422 CCTCTCTCTCTCTCTCTCTCTCTTC 60.221 52.000 0.00 0.00 0.00 2.87
968 976 4.653341 CCTCTCTCTCTCTCTCTCTCTCTT 59.347 50.000 0.00 0.00 0.00 2.85
969 977 4.078922 TCCTCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
970 978 4.219115 TCCTCTCTCTCTCTCTCTCTCTC 58.781 52.174 0.00 0.00 0.00 3.20
971 979 4.078922 TCTCCTCTCTCTCTCTCTCTCTCT 60.079 50.000 0.00 0.00 0.00 3.10
973 981 4.222336 CTCTCCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
976 984 2.370189 CCCTCTCCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
977 985 2.412591 CCCTCTCCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
978 986 1.421646 CCCCTCTCCTCTCTCTCTCTC 59.578 61.905 0.00 0.00 0.00 3.20
979 987 1.010793 TCCCCTCTCCTCTCTCTCTCT 59.989 57.143 0.00 0.00 0.00 3.10
980 988 1.518367 TCCCCTCTCCTCTCTCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
999 1017 4.778143 GGCACCCTCGACGCCATT 62.778 66.667 5.72 0.00 45.52 3.16
1243 1267 1.719378 AGGAGAGGAAGGAGAAGGTGA 59.281 52.381 0.00 0.00 0.00 4.02
1349 1384 7.117523 CCAAATGAGAAGGAATATCAGATCGTC 59.882 40.741 0.00 0.00 31.69 4.20
1370 1405 6.514048 CGAGAAAAGAAAGAGCTCAACCAAAT 60.514 38.462 17.77 0.00 0.00 2.32
1429 1464 5.570320 TCCATCCACCCTAAAAAGAAAGAG 58.430 41.667 0.00 0.00 0.00 2.85
1471 1506 1.143684 AGCAAAACCAGCTGAGAGGAA 59.856 47.619 17.39 0.00 41.61 3.36
1516 1551 5.011023 ACCATTGAAGGGAGAATTTCAACAC 59.989 40.000 1.57 0.00 43.66 3.32
1546 1585 6.183360 CGACCTAGGTGATAAAGGATCAAGAA 60.183 42.308 22.10 0.00 46.30 2.52
1547 1586 5.302059 CGACCTAGGTGATAAAGGATCAAGA 59.698 44.000 22.10 0.00 46.30 3.02
1548 1587 5.069251 ACGACCTAGGTGATAAAGGATCAAG 59.931 44.000 22.10 0.00 46.30 3.02
1549 1588 4.960469 ACGACCTAGGTGATAAAGGATCAA 59.040 41.667 22.10 0.00 46.30 2.57
1550 1589 4.543689 ACGACCTAGGTGATAAAGGATCA 58.456 43.478 22.10 0.00 42.55 2.92
1551 1590 4.828387 AGACGACCTAGGTGATAAAGGATC 59.172 45.833 22.10 0.00 34.34 3.36
1552 1591 4.805744 AGACGACCTAGGTGATAAAGGAT 58.194 43.478 22.10 0.00 34.34 3.24
1553 1592 4.205587 GAGACGACCTAGGTGATAAAGGA 58.794 47.826 22.10 0.00 34.34 3.36
1554 1593 3.952323 TGAGACGACCTAGGTGATAAAGG 59.048 47.826 22.10 1.89 36.42 3.11
1555 1594 5.278561 GGATGAGACGACCTAGGTGATAAAG 60.279 48.000 22.10 5.89 0.00 1.85
1556 1595 4.583489 GGATGAGACGACCTAGGTGATAAA 59.417 45.833 22.10 0.26 0.00 1.40
1558 1597 3.752665 GGATGAGACGACCTAGGTGATA 58.247 50.000 22.10 0.00 0.00 2.15
1562 1601 0.255318 ACGGATGAGACGACCTAGGT 59.745 55.000 16.26 16.26 34.93 3.08
1563 1602 1.334243 GAACGGATGAGACGACCTAGG 59.666 57.143 7.41 7.41 34.93 3.02
1565 1604 1.386533 GGAACGGATGAGACGACCTA 58.613 55.000 0.00 0.00 34.93 3.08
1567 1606 1.141234 GGGAACGGATGAGACGACC 59.859 63.158 0.00 0.00 34.93 4.79
1568 1607 0.179134 CAGGGAACGGATGAGACGAC 60.179 60.000 0.00 0.00 34.93 4.34
1569 1608 1.945354 GCAGGGAACGGATGAGACGA 61.945 60.000 0.00 0.00 34.93 4.20
1570 1609 1.519455 GCAGGGAACGGATGAGACG 60.519 63.158 0.00 0.00 37.36 4.18
1572 1611 1.667154 CTCGCAGGGAACGGATGAGA 61.667 60.000 0.00 0.00 33.59 3.27
1573 1612 1.227089 CTCGCAGGGAACGGATGAG 60.227 63.158 0.00 0.00 0.00 2.90
1574 1613 1.043116 ATCTCGCAGGGAACGGATGA 61.043 55.000 0.00 0.00 0.00 2.92
1576 1615 0.541863 AAATCTCGCAGGGAACGGAT 59.458 50.000 0.00 0.00 0.00 4.18
1577 1616 0.391130 CAAATCTCGCAGGGAACGGA 60.391 55.000 0.00 0.00 0.00 4.69
1578 1617 0.391130 TCAAATCTCGCAGGGAACGG 60.391 55.000 0.00 0.00 0.00 4.44
1579 1618 1.002366 CTCAAATCTCGCAGGGAACG 58.998 55.000 0.00 0.00 0.00 3.95
1582 1621 1.478510 GAGTCTCAAATCTCGCAGGGA 59.521 52.381 0.00 0.00 0.00 4.20
1583 1622 1.472376 GGAGTCTCAAATCTCGCAGGG 60.472 57.143 1.47 0.00 0.00 4.45
1584 1623 1.472376 GGGAGTCTCAAATCTCGCAGG 60.472 57.143 1.47 0.00 41.26 4.85
1585 1624 1.480137 AGGGAGTCTCAAATCTCGCAG 59.520 52.381 1.47 0.00 43.10 5.18
1586 1625 1.561643 AGGGAGTCTCAAATCTCGCA 58.438 50.000 1.47 0.00 43.10 5.10
1587 1626 2.167487 AGAAGGGAGTCTCAAATCTCGC 59.833 50.000 1.47 0.00 41.70 5.03
1588 1627 4.464069 AAGAAGGGAGTCTCAAATCTCG 57.536 45.455 1.47 0.00 0.00 4.04
1589 1628 6.883744 ACATAAGAAGGGAGTCTCAAATCTC 58.116 40.000 1.47 0.00 0.00 2.75
1590 1629 6.882768 ACATAAGAAGGGAGTCTCAAATCT 57.117 37.500 1.47 0.00 0.00 2.40
1591 1630 7.627300 GCAAACATAAGAAGGGAGTCTCAAATC 60.627 40.741 1.47 0.00 0.00 2.17
1592 1631 6.151817 GCAAACATAAGAAGGGAGTCTCAAAT 59.848 38.462 1.47 0.00 0.00 2.32
1593 1632 5.473504 GCAAACATAAGAAGGGAGTCTCAAA 59.526 40.000 1.47 0.00 0.00 2.69
1594 1633 5.003804 GCAAACATAAGAAGGGAGTCTCAA 58.996 41.667 1.47 0.00 0.00 3.02
1595 1634 4.041567 TGCAAACATAAGAAGGGAGTCTCA 59.958 41.667 1.47 0.00 0.00 3.27
1596 1635 4.393371 GTGCAAACATAAGAAGGGAGTCTC 59.607 45.833 0.00 0.00 0.00 3.36
1597 1636 4.202461 TGTGCAAACATAAGAAGGGAGTCT 60.202 41.667 0.00 0.00 0.00 3.24
1598 1637 4.072131 TGTGCAAACATAAGAAGGGAGTC 58.928 43.478 0.00 0.00 0.00 3.36
1599 1638 4.098914 TGTGCAAACATAAGAAGGGAGT 57.901 40.909 0.00 0.00 0.00 3.85
1600 1639 4.460382 ACATGTGCAAACATAAGAAGGGAG 59.540 41.667 0.00 0.00 0.00 4.30
1601 1640 4.218200 CACATGTGCAAACATAAGAAGGGA 59.782 41.667 13.94 0.00 0.00 4.20
1602 1641 4.487948 CACATGTGCAAACATAAGAAGGG 58.512 43.478 13.94 0.00 0.00 3.95
1603 1642 4.487948 CCACATGTGCAAACATAAGAAGG 58.512 43.478 20.81 0.00 0.00 3.46
1604 1643 4.218200 TCCCACATGTGCAAACATAAGAAG 59.782 41.667 20.81 1.76 0.00 2.85
1605 1644 4.022416 GTCCCACATGTGCAAACATAAGAA 60.022 41.667 20.81 0.00 0.00 2.52
1606 1645 3.505680 GTCCCACATGTGCAAACATAAGA 59.494 43.478 20.81 2.60 0.00 2.10
1607 1646 3.255395 TGTCCCACATGTGCAAACATAAG 59.745 43.478 20.81 3.23 0.00 1.73
1608 1647 3.225940 TGTCCCACATGTGCAAACATAA 58.774 40.909 20.81 0.00 0.00 1.90
1609 1648 2.868899 TGTCCCACATGTGCAAACATA 58.131 42.857 20.81 0.64 0.00 2.29
1610 1649 1.702182 TGTCCCACATGTGCAAACAT 58.298 45.000 20.81 0.00 0.00 2.71
1611 1650 1.408340 CTTGTCCCACATGTGCAAACA 59.592 47.619 20.81 18.61 0.00 2.83
1612 1651 1.269726 CCTTGTCCCACATGTGCAAAC 60.270 52.381 20.81 16.42 0.00 2.93
1613 1652 1.039068 CCTTGTCCCACATGTGCAAA 58.961 50.000 20.81 9.87 0.00 3.68
1614 1653 1.462731 GCCTTGTCCCACATGTGCAA 61.463 55.000 20.81 16.92 0.00 4.08
1615 1654 1.902918 GCCTTGTCCCACATGTGCA 60.903 57.895 20.81 10.33 0.00 4.57
1616 1655 1.462731 TTGCCTTGTCCCACATGTGC 61.463 55.000 20.81 7.64 0.00 4.57
1617 1656 1.000060 CTTTGCCTTGTCCCACATGTG 60.000 52.381 19.31 19.31 0.00 3.21
1618 1657 1.331214 CTTTGCCTTGTCCCACATGT 58.669 50.000 0.00 0.00 0.00 3.21
1735 1775 2.674420 CCTCCTCACTTAATACGGGGA 58.326 52.381 0.00 0.00 0.00 4.81
1740 1780 5.609533 TTACAGGCCTCCTCACTTAATAC 57.390 43.478 0.00 0.00 0.00 1.89
1782 1824 9.369904 CATTTTCACGGGAGATTTAATTTCATT 57.630 29.630 0.00 0.00 0.00 2.57
1788 1830 4.202010 CGGCATTTTCACGGGAGATTTAAT 60.202 41.667 0.00 0.00 0.00 1.40
1797 1839 2.286772 GCTATAACGGCATTTTCACGGG 60.287 50.000 0.00 0.00 0.00 5.28
1801 1843 2.303175 GGGGCTATAACGGCATTTTCA 58.697 47.619 0.00 0.00 0.00 2.69
1806 1848 1.189524 TAGCGGGGCTATAACGGCAT 61.190 55.000 0.00 0.00 40.44 4.40
1820 1862 1.583054 GCTCCCAACAACTATAGCGG 58.417 55.000 0.00 0.00 0.00 5.52
1846 1888 2.435938 CGGTTGTGGCCATAGCGT 60.436 61.111 25.30 0.00 41.24 5.07
1883 1928 2.844946 TGAACTTTGGATCGTTCAGCA 58.155 42.857 9.11 0.00 43.10 4.41
1915 1960 3.774216 CTGGACAGGAGAGAGGATTTCTT 59.226 47.826 0.00 0.00 35.87 2.52
1933 1978 4.189231 GCTATAGCGGAAACTTTTCTGGA 58.811 43.478 9.40 0.00 42.46 3.86
1957 2002 3.181439 GGAGGCTCCCAACAATTATAGCT 60.181 47.826 23.49 0.00 0.00 3.32
1964 2009 2.044946 GCGGAGGCTCCCAACAAT 60.045 61.111 27.36 0.00 35.83 2.71
2004 2049 1.880027 GCGGGATATTCGGAGCATTTT 59.120 47.619 0.00 0.00 0.00 1.82
2059 2104 3.330126 TCCGGTCAGGATAGAGGATTT 57.670 47.619 0.00 0.00 45.98 2.17
2101 2146 0.657840 GCAGTTGTATAGCGGGCAAG 59.342 55.000 0.00 0.00 0.00 4.01
2115 2160 1.339610 CTCTCCGCAGCTATAGCAGTT 59.660 52.381 26.07 3.14 45.16 3.16
2145 2190 5.476599 ACAAATCACGGGAGAAATGATTTCA 59.523 36.000 19.02 0.00 45.49 2.69
2146 2191 5.954335 ACAAATCACGGGAGAAATGATTTC 58.046 37.500 9.82 9.82 45.49 2.17
2214 2261 0.106967 GCAGAAGACCCCCTCATTCC 60.107 60.000 0.00 0.00 0.00 3.01
2219 2266 2.403561 AGAATAGCAGAAGACCCCCTC 58.596 52.381 0.00 0.00 0.00 4.30
2220 2267 2.577772 AGAATAGCAGAAGACCCCCT 57.422 50.000 0.00 0.00 0.00 4.79
2230 2529 7.765360 AGAAAGTGAGATCAAGAAGAATAGCAG 59.235 37.037 0.00 0.00 0.00 4.24
2245 2544 6.763610 ACACGAGAAAGAAAAGAAAGTGAGAT 59.236 34.615 0.00 0.00 0.00 2.75
2250 2549 6.986904 AAGACACGAGAAAGAAAAGAAAGT 57.013 33.333 0.00 0.00 0.00 2.66
2251 2550 8.675040 AAAAAGACACGAGAAAGAAAAGAAAG 57.325 30.769 0.00 0.00 0.00 2.62
2289 2588 4.571176 GCTAGGAGCTTTGGTACATTACAC 59.429 45.833 0.00 0.00 36.68 2.90
2364 2663 3.387374 AGATTGTGGCAAATGTTTGGACA 59.613 39.130 7.51 0.00 40.71 4.02
2479 2782 4.156556 TCCAAGCACGTACGTCTACTAATT 59.843 41.667 19.94 2.90 0.00 1.40
2480 2783 3.691118 TCCAAGCACGTACGTCTACTAAT 59.309 43.478 19.94 0.00 0.00 1.73
2488 2791 2.751259 TCTTCTATCCAAGCACGTACGT 59.249 45.455 16.72 16.72 0.00 3.57
2489 2792 3.181499 ACTCTTCTATCCAAGCACGTACG 60.181 47.826 15.01 15.01 0.00 3.67
2490 2793 4.373348 ACTCTTCTATCCAAGCACGTAC 57.627 45.455 0.00 0.00 0.00 3.67
2491 2794 4.461431 TGAACTCTTCTATCCAAGCACGTA 59.539 41.667 0.00 0.00 0.00 3.57
2492 2795 3.258372 TGAACTCTTCTATCCAAGCACGT 59.742 43.478 0.00 0.00 0.00 4.49
2504 2807 4.527509 TTTCTCTCGCATGAACTCTTCT 57.472 40.909 0.00 0.00 0.00 2.85
2530 2834 5.044179 TGTCCCCATGATTGATTCTTTACCT 60.044 40.000 0.00 0.00 0.00 3.08
2540 2844 5.476599 CACTAACTTTTGTCCCCATGATTGA 59.523 40.000 0.00 0.00 0.00 2.57
2541 2845 5.336690 CCACTAACTTTTGTCCCCATGATTG 60.337 44.000 0.00 0.00 0.00 2.67
2545 2849 2.231235 GCCACTAACTTTTGTCCCCATG 59.769 50.000 0.00 0.00 0.00 3.66
2586 2890 1.153188 CGGTCATGCACTGCCCATA 60.153 57.895 0.00 0.00 0.00 2.74
2587 2891 2.438975 CGGTCATGCACTGCCCAT 60.439 61.111 0.00 0.00 0.00 4.00
2588 2892 2.482796 ATTCGGTCATGCACTGCCCA 62.483 55.000 0.00 0.00 0.00 5.36
2589 2893 0.463654 TATTCGGTCATGCACTGCCC 60.464 55.000 0.00 0.00 0.00 5.36
2590 2894 1.597742 ATATTCGGTCATGCACTGCC 58.402 50.000 0.00 0.00 0.00 4.85
2591 2895 3.698029 AAATATTCGGTCATGCACTGC 57.302 42.857 0.00 0.00 0.00 4.40
2592 2896 5.233957 TGAAAATATTCGGTCATGCACTG 57.766 39.130 0.00 0.00 38.46 3.66
2593 2897 5.589855 TGATGAAAATATTCGGTCATGCACT 59.410 36.000 11.81 0.00 38.46 4.40
2602 2906 6.382869 AGCTCCTTTGATGAAAATATTCGG 57.617 37.500 0.00 0.00 38.46 4.30
2886 3194 8.304596 GCCTAGTCTATGTTACTACATGCATAA 58.695 37.037 0.00 0.00 44.56 1.90
2915 3230 2.518834 ACTGGGCACTAGAGGTAGGTAT 59.481 50.000 0.00 0.00 40.33 2.73
2918 3233 1.482593 CAACTGGGCACTAGAGGTAGG 59.517 57.143 0.00 0.00 40.33 3.18
2923 3238 5.543507 AGATAATCAACTGGGCACTAGAG 57.456 43.478 0.00 0.00 40.33 2.43
2928 3243 3.378427 GGACAAGATAATCAACTGGGCAC 59.622 47.826 0.00 0.00 0.00 5.01
2930 3245 2.952310 GGGACAAGATAATCAACTGGGC 59.048 50.000 0.00 0.00 0.00 5.36
2933 3256 3.873910 ACCGGGACAAGATAATCAACTG 58.126 45.455 6.32 0.00 0.00 3.16
2937 3260 6.653320 GCATATTTACCGGGACAAGATAATCA 59.347 38.462 6.32 0.00 0.00 2.57
2970 3293 2.157668 GTGAGATTACAGTGTGTTGCCG 59.842 50.000 5.88 0.00 0.00 5.69
2971 3294 3.058914 GTGTGAGATTACAGTGTGTTGCC 60.059 47.826 5.88 0.00 0.00 4.52
2972 3295 3.362986 CGTGTGAGATTACAGTGTGTTGC 60.363 47.826 5.88 0.00 0.00 4.17
2974 3297 4.316205 TCGTGTGAGATTACAGTGTGTT 57.684 40.909 5.88 0.00 0.00 3.32
2975 3298 4.316205 TTCGTGTGAGATTACAGTGTGT 57.684 40.909 5.88 0.00 0.00 3.72
2976 3299 4.923281 TCATTCGTGTGAGATTACAGTGTG 59.077 41.667 5.88 0.00 0.00 3.82
2978 3301 5.693090 CTCATTCGTGTGAGATTACAGTG 57.307 43.478 12.42 0.00 46.77 3.66
2988 3315 4.376146 TGTTTGACATCTCATTCGTGTGA 58.624 39.130 0.00 0.00 0.00 3.58
2994 3321 8.578308 TGTGAATTTTGTTTGACATCTCATTC 57.422 30.769 0.00 0.00 0.00 2.67
3005 3332 6.954852 GTGTGTGACATTGTGAATTTTGTTTG 59.045 34.615 0.00 0.00 0.00 2.93
3009 3336 6.020440 GTGAGTGTGTGACATTGTGAATTTTG 60.020 38.462 0.00 0.00 0.00 2.44
3015 3344 2.935849 GTGTGAGTGTGTGACATTGTGA 59.064 45.455 0.00 0.00 0.00 3.58
3020 3349 4.672587 AGTTAGTGTGAGTGTGTGACAT 57.327 40.909 0.00 0.00 0.00 3.06
3026 3360 9.950680 AAAAATGAATAAGTTAGTGTGAGTGTG 57.049 29.630 0.00 0.00 0.00 3.82
3034 3368 9.410556 CAACCCTGAAAAATGAATAAGTTAGTG 57.589 33.333 0.00 0.00 0.00 2.74
3038 3372 6.825610 TGCAACCCTGAAAAATGAATAAGTT 58.174 32.000 0.00 0.00 0.00 2.66
3060 3394 3.441290 CTGCTGCTGGAGGCTTGC 61.441 66.667 4.08 0.00 42.39 4.01
3069 3403 2.979197 GCACCTTCTGCTGCTGCTG 61.979 63.158 17.00 15.94 43.33 4.41
3071 3405 3.745803 GGCACCTTCTGCTGCTGC 61.746 66.667 8.89 8.89 46.25 5.25
3072 3406 1.900016 TTGGCACCTTCTGCTGCTG 60.900 57.895 0.00 0.00 46.25 4.41
3152 3486 3.659089 CTGCCCTCGGGTTGTACGG 62.659 68.421 3.54 0.00 37.65 4.02
3153 3487 2.125673 CTGCCCTCGGGTTGTACG 60.126 66.667 3.54 0.00 37.65 3.67
3154 3488 2.267961 CCTGCCCTCGGGTTGTAC 59.732 66.667 3.54 0.00 37.65 2.90
3155 3489 3.006728 CCCTGCCCTCGGGTTGTA 61.007 66.667 3.54 0.00 37.01 2.41
3168 3502 4.410400 GGAAGGTGGACGGCCCTG 62.410 72.222 3.83 0.00 35.38 4.45
3172 3506 4.754667 GTCGGGAAGGTGGACGGC 62.755 72.222 0.00 0.00 0.00 5.68
3173 3507 4.078516 GGTCGGGAAGGTGGACGG 62.079 72.222 0.00 0.00 0.00 4.79
3174 3508 2.995574 AGGTCGGGAAGGTGGACG 60.996 66.667 0.00 0.00 0.00 4.79
3175 3509 2.657066 GGAGGTCGGGAAGGTGGAC 61.657 68.421 0.00 0.00 0.00 4.02
3176 3510 2.284405 GGAGGTCGGGAAGGTGGA 60.284 66.667 0.00 0.00 0.00 4.02
3177 3511 3.771160 CGGAGGTCGGGAAGGTGG 61.771 72.222 0.00 0.00 34.75 4.61
3224 3567 0.034616 CCCTCATAGTAGCTGCTGCC 59.965 60.000 15.31 2.53 40.80 4.85
3227 3570 1.047002 CTGCCCTCATAGTAGCTGCT 58.953 55.000 9.94 9.94 0.00 4.24
3334 3677 1.805945 GCCACCGCTGAAGTAGTCG 60.806 63.158 0.00 0.00 0.00 4.18
3335 3678 1.592223 AGCCACCGCTGAAGTAGTC 59.408 57.895 0.00 0.00 46.19 2.59
3336 3679 3.793060 AGCCACCGCTGAAGTAGT 58.207 55.556 0.00 0.00 46.19 2.73
3404 3747 1.377202 CCCATCCCGTGTTGAGGTG 60.377 63.158 0.00 0.00 0.00 4.00
3405 3748 2.602676 CCCCATCCCGTGTTGAGGT 61.603 63.158 0.00 0.00 0.00 3.85
3413 3756 2.122989 ATACTCGCCCCATCCCGT 60.123 61.111 0.00 0.00 0.00 5.28
3477 3820 0.942962 AGAGGCGTAATCGTCGTAGG 59.057 55.000 0.00 0.00 46.96 3.18
3484 3827 1.300233 GGGCAGAGAGGCGTAATCG 60.300 63.158 0.00 0.00 45.36 3.34
3729 4078 1.748879 ATTTGGACGTCGCCATGGG 60.749 57.895 15.13 3.69 37.86 4.00
3739 4088 1.671054 ACGGTGCTCCATTTGGACG 60.671 57.895 5.52 0.67 39.78 4.79
3757 4106 2.184322 GCGAAGTCATCCGCCTCA 59.816 61.111 0.00 0.00 45.06 3.86
3762 4111 2.505498 CCGAACGCGAAGTCATCCG 61.505 63.158 15.93 3.75 40.82 4.18
3800 4149 1.746615 CCTCCCACGCATTCACCAG 60.747 63.158 0.00 0.00 0.00 4.00
3801 4150 2.350895 CCTCCCACGCATTCACCA 59.649 61.111 0.00 0.00 0.00 4.17
3855 4204 0.980231 GAGGGTGAGGTCCAGCTCAT 60.980 60.000 11.47 0.00 42.62 2.90
4234 4592 7.389053 AGAGCAAGAACGATGAAGAAAAAGTAT 59.611 33.333 0.00 0.00 0.00 2.12
4276 4635 6.560253 AGCAAGTGTTTCATAACTTCGATT 57.440 33.333 0.00 0.00 34.41 3.34
4333 4694 0.406361 ACGGAGGGGGCATAAAACAA 59.594 50.000 0.00 0.00 0.00 2.83
4342 4703 5.595542 ACTTATATTTAAAAACGGAGGGGGC 59.404 40.000 0.00 0.00 0.00 5.80
4398 4759 7.332678 ACTTCAAACTACGTTTATGTACATCCC 59.667 37.037 12.68 0.48 33.70 3.85
4441 4802 6.684609 TTAATATGAACTACATACGCAGCG 57.315 37.500 14.82 14.82 43.12 5.18
4476 4837 6.935036 TCCCTCCCTCACTAAATATAAGTCT 58.065 40.000 0.00 0.00 0.00 3.24
4491 4854 2.363172 GGACACTGCTCCCTCCCTC 61.363 68.421 0.00 0.00 0.00 4.30
4502 4865 3.717707 TGAAACGAAGAAGAGGACACTG 58.282 45.455 0.00 0.00 0.00 3.66
4505 4868 4.220821 AGCTATGAAACGAAGAAGAGGACA 59.779 41.667 0.00 0.00 0.00 4.02
4506 4869 4.749976 AGCTATGAAACGAAGAAGAGGAC 58.250 43.478 0.00 0.00 0.00 3.85
4518 4886 6.531594 GCTCCCAAACAAAATAGCTATGAAAC 59.468 38.462 7.09 0.00 0.00 2.78
4531 4899 1.682854 CAAGAGCTGCTCCCAAACAAA 59.317 47.619 25.09 0.00 0.00 2.83
4545 4913 2.322371 CGAAAGCCTGTTTCAAGAGC 57.678 50.000 0.00 0.00 0.00 4.09
4625 4994 6.824305 ACATTTCAAGGAACAATAGACTGG 57.176 37.500 0.00 0.00 0.00 4.00
4646 5015 3.186702 TCGTTGGATGTGAGTCAAACA 57.813 42.857 0.00 0.00 32.62 2.83
4653 5022 6.241207 ACAATTAACTTCGTTGGATGTGAG 57.759 37.500 0.00 0.00 31.55 3.51
4728 5104 5.067936 GCTTAGATAGTAGCACTTCCTGTCA 59.932 44.000 0.00 0.00 37.35 3.58
4779 5155 9.434420 CATGTACAAAGAAAAATCTCTCTCTCT 57.566 33.333 0.00 0.00 0.00 3.10
4780 5156 9.429359 TCATGTACAAAGAAAAATCTCTCTCTC 57.571 33.333 0.00 0.00 0.00 3.20
4788 5182 7.167468 GTGTGTGGTCATGTACAAAGAAAAATC 59.833 37.037 0.00 0.00 0.00 2.17
4844 5240 3.373439 GTGCATGAGAGAATCGCTTTTCT 59.627 43.478 0.00 0.00 42.67 2.52
4845 5241 3.678662 GTGCATGAGAGAATCGCTTTTC 58.321 45.455 0.00 0.00 42.67 2.29
4846 5242 2.094894 CGTGCATGAGAGAATCGCTTTT 59.905 45.455 0.00 0.00 42.67 2.27
4847 5243 1.662629 CGTGCATGAGAGAATCGCTTT 59.337 47.619 0.00 0.00 42.67 3.51
4848 5244 1.284657 CGTGCATGAGAGAATCGCTT 58.715 50.000 0.00 0.00 42.67 4.68
4849 5245 0.529337 CCGTGCATGAGAGAATCGCT 60.529 55.000 7.72 0.00 42.67 4.93
4850 5246 0.807667 ACCGTGCATGAGAGAATCGC 60.808 55.000 7.72 0.00 42.67 4.58
4851 5247 2.389059 CTACCGTGCATGAGAGAATCG 58.611 52.381 7.72 0.00 42.67 3.34
4852 5248 2.101582 ACCTACCGTGCATGAGAGAATC 59.898 50.000 7.72 0.00 0.00 2.52
4853 5249 2.101582 GACCTACCGTGCATGAGAGAAT 59.898 50.000 7.72 0.00 0.00 2.40
4854 5250 1.476891 GACCTACCGTGCATGAGAGAA 59.523 52.381 7.72 0.00 0.00 2.87
4855 5251 1.103803 GACCTACCGTGCATGAGAGA 58.896 55.000 7.72 0.00 0.00 3.10
4856 5252 0.103208 GGACCTACCGTGCATGAGAG 59.897 60.000 7.72 3.78 31.96 3.20
4857 5253 0.613572 TGGACCTACCGTGCATGAGA 60.614 55.000 7.72 0.00 37.99 3.27
4858 5254 0.179100 CTGGACCTACCGTGCATGAG 60.179 60.000 7.72 0.00 42.55 2.90
4859 5255 0.902984 ACTGGACCTACCGTGCATGA 60.903 55.000 7.72 0.00 42.55 3.07
4860 5256 0.740868 CACTGGACCTACCGTGCATG 60.741 60.000 0.00 0.00 42.55 4.06
4861 5257 1.596934 CACTGGACCTACCGTGCAT 59.403 57.895 0.00 0.00 42.55 3.96
4862 5258 3.056458 CACTGGACCTACCGTGCA 58.944 61.111 0.00 0.00 41.06 4.57
4864 5260 0.740868 CATGCACTGGACCTACCGTG 60.741 60.000 0.00 0.00 41.97 4.94
4865 5261 1.596934 CATGCACTGGACCTACCGT 59.403 57.895 0.00 0.00 42.61 4.83
4866 5262 1.815421 GCATGCACTGGACCTACCG 60.815 63.158 14.21 0.00 42.61 4.02
4867 5263 0.107017 ATGCATGCACTGGACCTACC 60.107 55.000 25.37 0.00 39.54 3.18
4868 5264 1.303309 GATGCATGCACTGGACCTAC 58.697 55.000 25.37 2.53 0.00 3.18
4869 5265 0.181114 GGATGCATGCACTGGACCTA 59.819 55.000 25.37 0.00 0.00 3.08
4870 5266 1.077212 GGATGCATGCACTGGACCT 60.077 57.895 25.37 4.65 0.00 3.85
4871 5267 0.754217 ATGGATGCATGCACTGGACC 60.754 55.000 25.37 19.99 0.00 4.46
4872 5268 0.666913 GATGGATGCATGCACTGGAC 59.333 55.000 25.37 11.92 0.00 4.02
4873 5269 0.816421 CGATGGATGCATGCACTGGA 60.816 55.000 25.37 7.80 0.00 3.86
4874 5270 1.652563 CGATGGATGCATGCACTGG 59.347 57.895 25.37 11.46 0.00 4.00
4875 5271 1.008881 GCGATGGATGCATGCACTG 60.009 57.895 25.37 18.65 0.00 3.66
4876 5272 1.153025 AGCGATGGATGCATGCACT 60.153 52.632 25.37 13.30 33.85 4.40
4877 5273 1.008881 CAGCGATGGATGCATGCAC 60.009 57.895 25.37 16.53 33.85 4.57
4878 5274 2.190841 CCAGCGATGGATGCATGCA 61.191 57.895 25.04 25.04 33.85 3.96
4879 5275 1.241990 ATCCAGCGATGGATGCATGC 61.242 55.000 33.19 11.82 46.19 4.06
4880 5276 2.942641 ATCCAGCGATGGATGCATG 58.057 52.632 33.19 0.00 46.19 4.06
4886 5282 0.249447 CAGCGTAATCCAGCGATGGA 60.249 55.000 26.87 26.87 40.27 3.41
4887 5283 2.229039 CAGCGTAATCCAGCGATGG 58.771 57.895 15.12 15.12 40.27 3.51
4888 5284 0.249447 TCCAGCGTAATCCAGCGATG 60.249 55.000 0.00 0.00 43.05 3.84
4889 5285 0.032678 CTCCAGCGTAATCCAGCGAT 59.967 55.000 0.00 0.00 38.61 4.58
4890 5286 1.035385 TCTCCAGCGTAATCCAGCGA 61.035 55.000 0.00 0.00 38.61 4.93
4891 5287 0.032678 ATCTCCAGCGTAATCCAGCG 59.967 55.000 0.00 0.00 38.61 5.18
4892 5288 1.606737 GGATCTCCAGCGTAATCCAGC 60.607 57.143 0.00 0.00 38.05 4.85
4893 5289 1.336332 CGGATCTCCAGCGTAATCCAG 60.336 57.143 0.00 0.00 38.04 3.86
4894 5290 0.673985 CGGATCTCCAGCGTAATCCA 59.326 55.000 0.00 0.00 38.04 3.41
4895 5291 0.959553 TCGGATCTCCAGCGTAATCC 59.040 55.000 0.00 0.00 35.37 3.01
4896 5292 1.609555 ACTCGGATCTCCAGCGTAATC 59.390 52.381 0.00 0.00 35.14 1.75
4897 5293 1.693627 ACTCGGATCTCCAGCGTAAT 58.306 50.000 0.00 0.00 35.14 1.89
4898 5294 3.186345 ACTCGGATCTCCAGCGTAA 57.814 52.632 0.00 0.00 35.14 3.18
4899 5295 4.979657 ACTCGGATCTCCAGCGTA 57.020 55.556 0.00 0.00 35.14 4.42


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.