Multiple sequence alignment - TraesCS6B01G367800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G367800 chr6B 100.000 5642 0 0 1 5642 641413893 641408252 0.000000e+00 10419.0
1 TraesCS6B01G367800 chr6B 80.198 202 29 5 5387 5584 118037523 118037329 2.120000e-29 141.0
2 TraesCS6B01G367800 chr6D 93.383 3098 137 35 1795 4842 426118096 426115017 0.000000e+00 4523.0
3 TraesCS6B01G367800 chr6D 88.149 1097 94 21 674 1755 426119168 426118093 0.000000e+00 1273.0
4 TraesCS6B01G367800 chr6D 83.958 480 27 17 5169 5604 426113292 426112819 1.130000e-111 414.0
5 TraesCS6B01G367800 chr6D 84.500 200 21 7 478 673 426119538 426119345 7.460000e-44 189.0
6 TraesCS6B01G367800 chr6D 82.051 156 19 4 5387 5541 53576718 53576865 2.130000e-24 124.0
7 TraesCS6B01G367800 chr6D 81.651 109 13 7 5055 5161 426113441 426113338 3.620000e-12 84.2
8 TraesCS6B01G367800 chr6D 92.453 53 3 1 5211 5263 53581709 53581760 2.180000e-09 75.0
9 TraesCS6B01G367800 chr6A 92.925 3067 141 39 1903 4937 571032956 571029934 0.000000e+00 4392.0
10 TraesCS6B01G367800 chr6A 84.989 1812 161 50 1 1755 571034773 571033016 0.000000e+00 1736.0
11 TraesCS6B01G367800 chr6A 93.413 167 10 1 5169 5335 571029090 571028925 4.370000e-61 246.0
12 TraesCS6B01G367800 chr6A 89.820 167 8 2 5445 5604 571028919 571028755 7.410000e-49 206.0
13 TraesCS6B01G367800 chr6A 78.390 236 31 7 5377 5600 596160342 596160115 9.860000e-28 135.0
14 TraesCS6B01G367800 chr6A 92.000 50 3 1 5217 5266 61733617 61733569 1.010000e-07 69.4
15 TraesCS6B01G367800 chr2B 95.949 1975 70 9 2887 4855 534841092 534843062 0.000000e+00 3195.0
16 TraesCS6B01G367800 chr2B 85.549 1038 91 33 762 1765 534838968 534839980 0.000000e+00 1031.0
17 TraesCS6B01G367800 chr2B 87.536 690 56 21 1822 2494 534840091 534840767 0.000000e+00 771.0
18 TraesCS6B01G367800 chr2B 82.979 376 50 12 1797 2164 65103125 65103494 1.520000e-85 327.0
19 TraesCS6B01G367800 chr2B 77.554 597 76 37 2250 2805 65103491 65104070 1.970000e-79 307.0
20 TraesCS6B01G367800 chr5B 90.371 2451 146 54 2405 4830 112266669 112264284 0.000000e+00 3136.0
21 TraesCS6B01G367800 chr5B 88.628 1873 165 24 2791 4647 239427468 239425628 0.000000e+00 2235.0
22 TraesCS6B01G367800 chr5B 80.977 962 115 38 739 1695 112268217 112267319 0.000000e+00 701.0
23 TraesCS6B01G367800 chr5B 82.115 643 69 20 1768 2406 112267301 112266701 5.040000e-140 508.0
24 TraesCS6B01G367800 chr5B 79.805 718 105 27 890 1602 239437461 239436779 2.360000e-133 486.0
25 TraesCS6B01G367800 chr5B 84.729 406 48 8 1792 2187 239436260 239435859 1.470000e-105 394.0
26 TraesCS6B01G367800 chr5B 96.209 211 8 0 1010 1220 660365443 660365653 4.180000e-91 346.0
27 TraesCS6B01G367800 chr5B 77.404 208 30 12 5446 5642 36796613 36796412 2.150000e-19 108.0
28 TraesCS6B01G367800 chr5B 77.404 208 30 12 5446 5642 36826612 36826411 2.150000e-19 108.0
29 TraesCS6B01G367800 chr5B 77.301 163 20 7 5434 5584 36614793 36614950 4.690000e-11 80.5
30 TraesCS6B01G367800 chr5A 89.846 2472 163 54 2405 4835 95566782 95569206 0.000000e+00 3094.0
31 TraesCS6B01G367800 chr5A 81.687 901 101 35 798 1695 95565292 95566131 0.000000e+00 691.0
32 TraesCS6B01G367800 chr5A 84.026 626 57 18 1765 2386 95566146 95566732 3.820000e-156 562.0
33 TraesCS6B01G367800 chr5A 85.806 155 14 7 5170 5319 30393711 30393862 2.100000e-34 158.0
34 TraesCS6B01G367800 chr5A 80.800 125 16 4 5470 5587 30519189 30519066 2.160000e-14 91.6
35 TraesCS6B01G367800 chr5D 93.623 1976 107 18 2869 4835 103215172 103213207 0.000000e+00 2933.0
36 TraesCS6B01G367800 chr5D 80.650 739 93 32 969 1698 103216941 103216244 1.390000e-145 527.0
37 TraesCS6B01G367800 chr5D 85.082 429 44 11 1771 2190 103216220 103215803 2.430000e-113 420.0
38 TraesCS6B01G367800 chr5D 96.667 210 7 0 1010 1219 525783330 525783539 3.230000e-92 350.0
39 TraesCS6B01G367800 chr5D 82.133 375 37 21 2405 2753 103215603 103215233 1.540000e-75 294.0
40 TraesCS6B01G367800 chr5D 84.831 178 20 2 5170 5340 42063265 42063088 7.520000e-39 172.0
41 TraesCS6B01G367800 chr5D 90.152 132 8 4 2282 2411 103215760 103215632 3.500000e-37 167.0
42 TraesCS6B01G367800 chr4B 87.889 1767 206 5 2887 4647 188194261 188192497 0.000000e+00 2071.0
43 TraesCS6B01G367800 chr4D 88.030 1746 200 6 2908 4647 124261615 124259873 0.000000e+00 2058.0
44 TraesCS6B01G367800 chr1B 86.213 544 59 11 1860 2391 20677679 20678218 4.900000e-160 575.0
45 TraesCS6B01G367800 chr2D 87.054 224 19 3 5384 5599 455308590 455308811 1.570000e-60 244.0
46 TraesCS6B01G367800 chr2D 85.135 222 17 4 5170 5375 455308324 455308545 4.430000e-51 213.0
47 TraesCS6B01G367800 chr3A 91.045 134 9 3 2274 2406 693460676 693460545 1.620000e-40 178.0
48 TraesCS6B01G367800 chr1D 91.200 125 7 2 2265 2385 486866446 486866322 3.500000e-37 167.0
49 TraesCS6B01G367800 chr3B 86.331 139 15 4 2274 2411 739982278 739982143 1.270000e-31 148.0
50 TraesCS6B01G367800 chr3D 86.567 134 15 3 2274 2406 557704097 557703966 1.640000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G367800 chr6B 641408252 641413893 5641 True 10419.000000 10419 100.000000 1 5642 1 chr6B.!!$R2 5641
1 TraesCS6B01G367800 chr6D 426112819 426119538 6719 True 1296.640000 4523 86.328200 478 5604 5 chr6D.!!$R1 5126
2 TraesCS6B01G367800 chr6A 571028755 571034773 6018 True 1645.000000 4392 90.286750 1 5604 4 chr6A.!!$R3 5603
3 TraesCS6B01G367800 chr2B 534838968 534843062 4094 False 1665.666667 3195 89.678000 762 4855 3 chr2B.!!$F2 4093
4 TraesCS6B01G367800 chr2B 65103125 65104070 945 False 317.000000 327 80.266500 1797 2805 2 chr2B.!!$F1 1008
5 TraesCS6B01G367800 chr5B 239425628 239427468 1840 True 2235.000000 2235 88.628000 2791 4647 1 chr5B.!!$R3 1856
6 TraesCS6B01G367800 chr5B 112264284 112268217 3933 True 1448.333333 3136 84.487667 739 4830 3 chr5B.!!$R4 4091
7 TraesCS6B01G367800 chr5B 239435859 239437461 1602 True 440.000000 486 82.267000 890 2187 2 chr5B.!!$R5 1297
8 TraesCS6B01G367800 chr5A 95565292 95569206 3914 False 1449.000000 3094 85.186333 798 4835 3 chr5A.!!$F2 4037
9 TraesCS6B01G367800 chr5D 103213207 103216941 3734 True 868.200000 2933 86.328000 969 4835 5 chr5D.!!$R2 3866
10 TraesCS6B01G367800 chr4B 188192497 188194261 1764 True 2071.000000 2071 87.889000 2887 4647 1 chr4B.!!$R1 1760
11 TraesCS6B01G367800 chr4D 124259873 124261615 1742 True 2058.000000 2058 88.030000 2908 4647 1 chr4D.!!$R1 1739
12 TraesCS6B01G367800 chr1B 20677679 20678218 539 False 575.000000 575 86.213000 1860 2391 1 chr1B.!!$F1 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
221 222 0.250553 CCGTGACTAGGTTTTGCCCA 60.251 55.000 0.00 0.0 38.26 5.36 F
1373 1626 0.030908 GGTCCTGGTCGCTTAGATCG 59.969 60.000 0.00 0.0 30.89 3.69 F
1662 2290 0.106519 ACTTTGTCCTGCCAAGTGCT 60.107 50.000 0.00 0.0 42.00 4.40 F
2008 2744 0.807496 AAGCGCCTTTCTGCTGAATC 59.193 50.000 2.29 0.0 41.46 2.52 F
3499 4390 1.003233 AACCCAAGAGCTCTTCGGC 60.003 57.895 32.60 0.0 37.69 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1395 1669 0.387622 CGAACCATTGCCAGCACAAG 60.388 55.000 0.00 0.00 31.96 3.16 R
2596 3450 0.460459 TGCCACGTTTCGAGACACAA 60.460 50.000 6.91 0.00 0.00 3.33 R
2900 3791 1.411394 CTTGGCATCTGCACAAAACG 58.589 50.000 4.33 0.00 44.36 3.60 R
3951 4854 1.886542 GTGGTGTTCCTTGGGATCAAC 59.113 52.381 5.91 5.91 39.00 3.18 R
5161 7511 0.035630 ACTGTCCAGCCAGCAGAATC 60.036 55.000 0.00 0.00 35.83 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.866762 GACATAGTCCGTTCTTGATGGC 59.133 50.000 0.00 0.00 34.15 4.40
50 51 1.568504 AGTCCGTTCTTGATGGCCTA 58.431 50.000 3.32 0.00 34.15 3.93
65 66 1.592064 GCCTAAGGCTCTGCTGATTC 58.408 55.000 0.00 0.00 46.69 2.52
66 67 1.140652 GCCTAAGGCTCTGCTGATTCT 59.859 52.381 0.00 0.00 46.69 2.40
69 70 0.327259 AAGGCTCTGCTGATTCTGCA 59.673 50.000 16.14 16.14 36.88 4.41
70 71 0.392729 AGGCTCTGCTGATTCTGCAC 60.393 55.000 13.50 5.34 34.77 4.57
71 72 1.375098 GGCTCTGCTGATTCTGCACC 61.375 60.000 13.50 10.21 34.77 5.01
72 73 1.703438 GCTCTGCTGATTCTGCACCG 61.703 60.000 13.50 8.90 34.77 4.94
73 74 1.703438 CTCTGCTGATTCTGCACCGC 61.703 60.000 13.50 0.00 34.77 5.68
74 75 3.092192 CTGCTGATTCTGCACCGCG 62.092 63.158 13.50 0.00 34.77 6.46
75 76 2.815211 GCTGATTCTGCACCGCGA 60.815 61.111 8.23 0.00 0.00 5.87
76 77 2.806856 GCTGATTCTGCACCGCGAG 61.807 63.158 8.23 0.00 0.00 5.03
77 78 1.446792 CTGATTCTGCACCGCGAGT 60.447 57.895 8.23 0.00 0.00 4.18
93 94 2.816689 CGAGTGTGTGTGGTAGAAACA 58.183 47.619 0.00 0.00 0.00 2.83
102 103 4.944317 TGTGTGGTAGAAACATGTTTGTCA 59.056 37.500 27.85 15.77 34.06 3.58
125 126 1.680735 GCAACAAAGTCACCATGGTCA 59.319 47.619 16.53 0.00 0.00 4.02
126 127 2.543653 GCAACAAAGTCACCATGGTCAC 60.544 50.000 16.53 13.97 0.00 3.67
127 128 1.981256 ACAAAGTCACCATGGTCACC 58.019 50.000 16.20 6.07 0.00 4.02
132 133 4.386951 CACCATGGTCACCGCGGA 62.387 66.667 35.90 9.64 0.00 5.54
137 138 3.171828 ATGGTCACCGCGGACAACA 62.172 57.895 35.90 26.01 39.59 3.33
149 150 1.358402 GACAACAACGCCACATGCA 59.642 52.632 0.00 0.00 41.33 3.96
157 158 3.882288 ACAACGCCACATGCATATGATAA 59.118 39.130 6.52 0.00 41.33 1.75
158 159 4.337836 ACAACGCCACATGCATATGATAAA 59.662 37.500 6.52 0.00 41.33 1.40
171 172 9.710900 ATGCATATGATAAAGTATCTTTCACGA 57.289 29.630 6.97 0.00 36.17 4.35
180 181 5.018695 AGTATCTTTCACGAAAAGTTGCG 57.981 39.130 12.47 0.00 44.07 4.85
186 187 0.713718 CACGAAAAGTTGCGTCGACG 60.714 55.000 32.57 32.57 38.92 5.12
204 205 1.538075 ACGTTTATCTTGGCCAAACCG 59.462 47.619 20.91 11.44 43.94 4.44
221 222 0.250553 CCGTGACTAGGTTTTGCCCA 60.251 55.000 0.00 0.00 38.26 5.36
223 224 1.812324 CGTGACTAGGTTTTGCCCACA 60.812 52.381 0.00 0.00 38.26 4.17
279 303 5.125417 TGGCCAAAACTCAAATAGATACTGC 59.875 40.000 0.61 0.00 0.00 4.40
281 305 5.125417 GCCAAAACTCAAATAGATACTGCCA 59.875 40.000 0.00 0.00 0.00 4.92
291 315 7.283127 TCAAATAGATACTGCCATTTTCTCCAC 59.717 37.037 0.00 0.00 0.00 4.02
292 316 4.574674 AGATACTGCCATTTTCTCCACA 57.425 40.909 0.00 0.00 0.00 4.17
311 335 2.092592 ACAGTTTGGACCGAAACTCCTT 60.093 45.455 15.13 4.94 42.96 3.36
331 355 7.118496 TCCTTTAACCATTTGTCAACATTGT 57.882 32.000 0.00 0.00 0.00 2.71
347 371 7.715249 GTCAACATTGTCACCATATATGTACCT 59.285 37.037 11.73 0.00 0.00 3.08
349 373 7.618019 ACATTGTCACCATATATGTACCTCT 57.382 36.000 11.73 0.00 0.00 3.69
388 412 0.811219 CGCCGCTTGGAGATCATTGA 60.811 55.000 0.00 0.00 33.84 2.57
408 432 7.821359 TCATTGAAAACAACATCAGTTTTGGAA 59.179 29.630 8.56 2.95 46.01 3.53
411 435 7.382110 TGAAAACAACATCAGTTTTGGAAAGA 58.618 30.769 8.56 0.00 46.01 2.52
451 475 6.791867 ATCCCGATCGAATCTTCCAATATA 57.208 37.500 18.66 0.00 0.00 0.86
452 476 6.208988 TCCCGATCGAATCTTCCAATATAG 57.791 41.667 18.66 0.00 0.00 1.31
453 477 5.949952 TCCCGATCGAATCTTCCAATATAGA 59.050 40.000 18.66 0.00 0.00 1.98
454 478 6.037098 CCCGATCGAATCTTCCAATATAGAC 58.963 44.000 18.66 0.00 0.00 2.59
455 479 6.350194 CCCGATCGAATCTTCCAATATAGACA 60.350 42.308 18.66 0.00 0.00 3.41
459 483 7.825331 TCGAATCTTCCAATATAGACAGACT 57.175 36.000 0.00 0.00 0.00 3.24
466 490 9.256228 TCTTCCAATATAGACAGACTTGTTAGT 57.744 33.333 0.00 0.00 37.76 2.24
491 515 3.391296 ACCGTAGTGCATCCCATATTTCT 59.609 43.478 0.00 0.00 0.00 2.52
492 516 3.997021 CCGTAGTGCATCCCATATTTCTC 59.003 47.826 0.00 0.00 0.00 2.87
494 518 5.047306 CCGTAGTGCATCCCATATTTCTCTA 60.047 44.000 0.00 0.00 0.00 2.43
495 519 6.096036 CGTAGTGCATCCCATATTTCTCTAG 58.904 44.000 0.00 0.00 0.00 2.43
497 521 4.006319 GTGCATCCCATATTTCTCTAGCC 58.994 47.826 0.00 0.00 0.00 3.93
498 522 3.009473 TGCATCCCATATTTCTCTAGCCC 59.991 47.826 0.00 0.00 0.00 5.19
550 575 2.360483 TCTTCAACTCCAATTGCGCAAA 59.640 40.909 28.81 9.74 0.00 3.68
551 576 3.005684 TCTTCAACTCCAATTGCGCAAAT 59.994 39.130 28.81 17.33 0.00 2.32
553 578 4.511617 TCAACTCCAATTGCGCAAATAA 57.488 36.364 28.81 11.96 0.00 1.40
561 586 4.229096 CAATTGCGCAAATAAGACACTGT 58.771 39.130 28.81 2.27 0.00 3.55
588 615 4.763793 ACATGGAATATGCCAAGATGCTAC 59.236 41.667 12.09 0.00 42.16 3.58
597 624 2.677037 GCCAAGATGCTACTACACCGTT 60.677 50.000 0.00 0.00 0.00 4.44
627 654 5.451354 AGAACCCCAAAGCTTAAACACTTA 58.549 37.500 0.00 0.00 0.00 2.24
628 655 5.301045 AGAACCCCAAAGCTTAAACACTTAC 59.699 40.000 0.00 0.00 0.00 2.34
632 659 4.533222 CCAAAGCTTAAACACTTACCACG 58.467 43.478 0.00 0.00 0.00 4.94
670 698 3.637273 GGACTCGCCAAGGTGGGT 61.637 66.667 4.55 4.55 42.66 4.51
694 900 3.284617 TCCATGCATCACCAGAAATCAG 58.715 45.455 0.00 0.00 0.00 2.90
702 908 2.076863 CACCAGAAATCAGGTCGGTTC 58.923 52.381 0.00 0.00 33.10 3.62
868 1075 4.542735 CGTCAAATTATAAAATCCCCGGC 58.457 43.478 0.00 0.00 0.00 6.13
906 1115 3.445987 CTCCTCTTCAAACCCTAGTCCT 58.554 50.000 0.00 0.00 0.00 3.85
908 1117 3.173965 CCTCTTCAAACCCTAGTCCTCA 58.826 50.000 0.00 0.00 0.00 3.86
912 1121 3.491766 TCAAACCCTAGTCCTCATCCT 57.508 47.619 0.00 0.00 0.00 3.24
915 1124 1.626621 ACCCTAGTCCTCATCCTCCT 58.373 55.000 0.00 0.00 0.00 3.69
933 1150 4.572571 TTGACCCGCCGCCACTTT 62.573 61.111 0.00 0.00 0.00 2.66
938 1155 4.394712 CCGCCGCCACTTTCTCCT 62.395 66.667 0.00 0.00 0.00 3.69
943 1160 1.221021 CGCCACTTTCTCCTACCCC 59.779 63.158 0.00 0.00 0.00 4.95
945 1162 1.905512 CCACTTTCTCCTACCCCGG 59.094 63.158 0.00 0.00 0.00 5.73
946 1163 0.616679 CCACTTTCTCCTACCCCGGA 60.617 60.000 0.73 0.00 0.00 5.14
947 1164 1.272807 CACTTTCTCCTACCCCGGAA 58.727 55.000 0.73 0.00 31.44 4.30
948 1165 1.207329 CACTTTCTCCTACCCCGGAAG 59.793 57.143 0.73 0.00 31.44 3.46
976 1207 2.821991 AACACACACAGTAGAGAGCC 57.178 50.000 0.00 0.00 0.00 4.70
982 1213 0.459489 CACAGTAGAGAGCCTCAGCC 59.541 60.000 0.00 0.00 41.25 4.85
1251 1486 1.956620 GCTTCTGCACTCGTTACGCC 61.957 60.000 0.00 0.00 39.41 5.68
1293 1531 8.107095 TGTTTTCATAAAGTGATTAGTAGGCCT 58.893 33.333 11.78 11.78 36.54 5.19
1299 1539 1.614413 GTGATTAGTAGGCCTCCTCGG 59.386 57.143 9.68 0.00 34.61 4.63
1320 1560 3.737774 GGTTTACTCCGTGTAGTGTGTTC 59.262 47.826 0.00 0.00 32.08 3.18
1324 1564 2.555757 ACTCCGTGTAGTGTGTTCTACC 59.444 50.000 0.00 0.00 39.39 3.18
1325 1565 1.536766 TCCGTGTAGTGTGTTCTACCG 59.463 52.381 0.00 0.00 39.39 4.02
1339 1579 2.925724 TCTACCGTTATTTGCATGGGG 58.074 47.619 0.00 0.00 0.00 4.96
1343 1583 2.635427 ACCGTTATTTGCATGGGGTTTT 59.365 40.909 0.00 0.00 0.00 2.43
1344 1584 3.833070 ACCGTTATTTGCATGGGGTTTTA 59.167 39.130 0.00 0.00 0.00 1.52
1345 1585 4.081917 ACCGTTATTTGCATGGGGTTTTAG 60.082 41.667 0.00 0.00 0.00 1.85
1346 1586 4.081917 CCGTTATTTGCATGGGGTTTTAGT 60.082 41.667 0.00 0.00 0.00 2.24
1347 1587 4.862018 CGTTATTTGCATGGGGTTTTAGTG 59.138 41.667 0.00 0.00 0.00 2.74
1350 1603 7.379750 GTTATTTGCATGGGGTTTTAGTGTTA 58.620 34.615 0.00 0.00 0.00 2.41
1373 1626 0.030908 GGTCCTGGTCGCTTAGATCG 59.969 60.000 0.00 0.00 30.89 3.69
1385 1659 1.001597 CTTAGATCGGTGGTCGTAGCC 60.002 57.143 0.00 0.00 40.32 3.93
1386 1660 1.162181 TAGATCGGTGGTCGTAGCCG 61.162 60.000 0.00 0.00 46.12 5.52
1387 1661 4.203076 ATCGGTGGTCGTAGCCGC 62.203 66.667 0.00 2.91 44.58 6.53
1395 1669 0.595310 GGTCGTAGCCGCAGAGATTC 60.595 60.000 0.00 0.00 0.00 2.52
1421 1702 2.095372 GCTGGCAATGGTTCGTTACTAC 59.905 50.000 0.00 0.00 0.00 2.73
1449 1730 3.119849 GCTGTTGTTAGCTGGTTGGTATG 60.120 47.826 0.00 0.00 40.52 2.39
1456 1737 1.032114 GCTGGTTGGTATGGAGGTGC 61.032 60.000 0.00 0.00 0.00 5.01
1467 1748 0.325933 TGGAGGTGCCAGATCTGTTG 59.674 55.000 21.11 8.21 43.33 3.33
1497 1784 0.552848 ATATGACCTGGGCAGTTGGG 59.447 55.000 8.85 0.00 0.00 4.12
1500 1787 3.569200 GACCTGGGCAGTTGGGTCC 62.569 68.421 0.00 0.00 41.48 4.46
1503 1790 2.776526 TGGGCAGTTGGGTCCTGT 60.777 61.111 0.00 0.00 32.35 4.00
1504 1791 2.357593 CTGGGCAGTTGGGTCCTGTT 62.358 60.000 0.00 0.00 32.35 3.16
1505 1792 1.063070 TGGGCAGTTGGGTCCTGTTA 61.063 55.000 0.00 0.00 32.35 2.41
1506 1793 0.111639 GGGCAGTTGGGTCCTGTTAA 59.888 55.000 0.00 0.00 32.41 2.01
1516 1807 4.290942 TGGGTCCTGTTAATTGTTTGGTT 58.709 39.130 0.00 0.00 0.00 3.67
1521 1812 4.956700 TCCTGTTAATTGTTTGGTTCCACA 59.043 37.500 0.00 0.00 0.00 4.17
1585 1877 4.836125 AACACTTCATTGACATGTGACC 57.164 40.909 1.15 0.00 33.41 4.02
1594 1890 1.086696 GACATGTGACCCGGTTGATG 58.913 55.000 1.15 0.00 0.00 3.07
1651 2279 6.749923 AGAGCTTGATTGATTACTTTGTCC 57.250 37.500 0.00 0.00 0.00 4.02
1662 2290 0.106519 ACTTTGTCCTGCCAAGTGCT 60.107 50.000 0.00 0.00 42.00 4.40
1679 2307 7.359181 GCCAAGTGCTATTTGTTTAACATGTTC 60.359 37.037 15.85 1.15 36.87 3.18
1681 2309 8.693504 CAAGTGCTATTTGTTTAACATGTTCTG 58.306 33.333 15.85 0.00 0.00 3.02
1736 2397 9.599322 CTTGTTCATGTCAGTTAAAGTATGTTC 57.401 33.333 0.00 0.00 0.00 3.18
1783 2444 5.778542 ACTATGGTGGAGAATACTACTGGT 58.221 41.667 0.00 0.00 0.00 4.00
1788 2503 4.409247 GGTGGAGAATACTACTGGTGGATT 59.591 45.833 0.00 0.00 0.00 3.01
1805 2520 6.126409 GGTGGATTTGTGGATTGGAACTATA 58.874 40.000 0.00 0.00 0.00 1.31
1882 2613 9.752274 CTTCATTGATTCTCTTTCTTCTAAACG 57.248 33.333 0.00 0.00 0.00 3.60
1890 2624 6.460781 TCTCTTTCTTCTAAACGGCATGTTA 58.539 36.000 0.00 0.00 40.84 2.41
1895 2629 6.903883 TCTTCTAAACGGCATGTTATTCTC 57.096 37.500 0.00 0.00 40.84 2.87
1995 2730 3.565482 TGATGATAAGAAATCCAAGCGCC 59.435 43.478 2.29 0.00 0.00 6.53
2008 2744 0.807496 AAGCGCCTTTCTGCTGAATC 59.193 50.000 2.29 0.00 41.46 2.52
2128 2870 5.815233 TTTTAGATGTGGCAAAATTGGGA 57.185 34.783 0.00 0.00 0.00 4.37
2157 2899 4.498682 GCTAAATGTGCCCATAGCTTTCAG 60.499 45.833 0.00 0.00 44.23 3.02
2228 2985 9.770097 TTTACTTTTATTGGATTTTGATGTGCA 57.230 25.926 0.00 0.00 0.00 4.57
2382 3165 3.272574 TCTGATCTCCCATTGCTGTTC 57.727 47.619 0.00 0.00 0.00 3.18
2761 3629 2.733956 CCTTTGTATTAGCCTGCCCAA 58.266 47.619 0.00 0.00 0.00 4.12
2816 3686 6.293955 GCCTTAAGTCATTTGTTGTCTGCTTA 60.294 38.462 0.97 0.00 0.00 3.09
2841 3716 5.294552 GCCTCAGTTTAAGTAAGTAGCATGG 59.705 44.000 0.00 0.00 0.00 3.66
2844 3719 6.403878 TCAGTTTAAGTAAGTAGCATGGGAC 58.596 40.000 0.00 0.00 0.00 4.46
3499 4390 1.003233 AACCCAAGAGCTCTTCGGC 60.003 57.895 32.60 0.00 37.69 5.54
3537 4428 2.301296 TGAGAGGGCAAAGAGAACTCTG 59.699 50.000 5.06 0.00 40.36 3.35
3834 4725 2.820037 GCTGTTGCCTACGGAGCC 60.820 66.667 0.00 0.00 34.90 4.70
3951 4854 1.375908 CGGGGGTGTGATGACAGTG 60.376 63.158 0.00 0.00 30.74 3.66
4077 4980 0.250727 CCAGGACCCGTGACAACAAT 60.251 55.000 0.00 0.00 0.00 2.71
4329 5232 2.408050 CACAAGAAGAAGGTGGAGTCG 58.592 52.381 0.00 0.00 0.00 4.18
4632 5538 1.615124 TGGCCCCAAGATCGAGGAA 60.615 57.895 0.00 0.00 0.00 3.36
4648 5555 4.037208 TCGAGGAAGTTGACTAAACGAGTT 59.963 41.667 0.00 0.00 44.04 3.01
4700 5615 7.148239 GCCTGCTTCTTAGTTATTATGTGTGTT 60.148 37.037 0.00 0.00 0.00 3.32
4861 5789 4.216411 TCTGGTGCTTTTGGGTACTATC 57.784 45.455 0.00 0.00 0.00 2.08
4865 5802 4.947388 TGGTGCTTTTGGGTACTATCATTC 59.053 41.667 0.00 0.00 0.00 2.67
4873 5810 9.681062 CTTTTGGGTACTATCATTCCTCTTTTA 57.319 33.333 0.00 0.00 0.00 1.52
4945 5974 6.750148 ACTTCTCTACGTCTTTGAAGTTCAT 58.250 36.000 6.36 0.00 42.93 2.57
4946 5975 6.864165 ACTTCTCTACGTCTTTGAAGTTCATC 59.136 38.462 6.36 0.00 42.93 2.92
4951 5980 4.833126 ACGTCTTTGAAGTTCATCGTTTG 58.167 39.130 6.36 0.00 0.00 2.93
4952 5981 4.211389 CGTCTTTGAAGTTCATCGTTTGG 58.789 43.478 6.36 0.00 0.00 3.28
4953 5982 4.025229 CGTCTTTGAAGTTCATCGTTTGGA 60.025 41.667 6.36 0.00 0.00 3.53
4954 5983 5.503357 CGTCTTTGAAGTTCATCGTTTGGAA 60.503 40.000 6.36 0.00 0.00 3.53
4956 5985 6.196538 GTCTTTGAAGTTCATCGTTTGGAAAC 59.803 38.462 6.36 0.00 35.59 2.78
4963 6057 3.138304 TCATCGTTTGGAAACTGGTCTG 58.862 45.455 1.04 0.00 36.77 3.51
4975 6069 5.805486 GGAAACTGGTCTGTTTTCTTTGTTC 59.195 40.000 7.26 0.00 39.86 3.18
4976 6070 5.975693 AACTGGTCTGTTTTCTTTGTTCA 57.024 34.783 0.00 0.00 0.00 3.18
4978 6072 5.253330 ACTGGTCTGTTTTCTTTGTTCAGA 58.747 37.500 0.00 0.00 33.60 3.27
4979 6073 5.888161 ACTGGTCTGTTTTCTTTGTTCAGAT 59.112 36.000 0.00 0.00 37.46 2.90
4980 6074 6.135290 TGGTCTGTTTTCTTTGTTCAGATG 57.865 37.500 0.00 0.00 37.46 2.90
4981 6075 5.067674 TGGTCTGTTTTCTTTGTTCAGATGG 59.932 40.000 0.00 0.00 37.46 3.51
4982 6076 4.978580 GTCTGTTTTCTTTGTTCAGATGGC 59.021 41.667 0.00 0.00 37.46 4.40
4983 6077 4.889409 TCTGTTTTCTTTGTTCAGATGGCT 59.111 37.500 0.00 0.00 31.51 4.75
4985 6079 5.591099 TGTTTTCTTTGTTCAGATGGCTTC 58.409 37.500 0.00 0.00 0.00 3.86
4987 6081 3.126001 TCTTTGTTCAGATGGCTTCGT 57.874 42.857 0.00 0.00 0.00 3.85
4995 6104 7.072177 TGTTCAGATGGCTTCGTAATTTTAG 57.928 36.000 0.00 0.00 0.00 1.85
5010 6119 9.505995 TCGTAATTTTAGGACTTTGTTTTGTTC 57.494 29.630 0.00 0.00 0.00 3.18
5014 6123 9.936759 AATTTTAGGACTTTGTTTTGTTCTGAA 57.063 25.926 0.00 0.00 0.00 3.02
5015 6124 9.936759 ATTTTAGGACTTTGTTTTGTTCTGAAA 57.063 25.926 0.00 0.00 33.71 2.69
5017 6126 5.410924 AGGACTTTGTTTTGTTCTGAAAGC 58.589 37.500 0.00 0.00 0.00 3.51
5045 6228 4.126908 AGGACCTCCTGCAGTCTG 57.873 61.111 13.81 2.41 46.55 3.51
5046 6229 1.157276 AGGACCTCCTGCAGTCTGT 59.843 57.895 13.81 5.95 46.55 3.41
5047 6230 1.190833 AGGACCTCCTGCAGTCTGTG 61.191 60.000 13.81 0.00 46.55 3.66
5085 7435 4.032672 CAGCTTTTGATTGTCGTTTTTGCA 59.967 37.500 0.00 0.00 0.00 4.08
5090 7440 6.509317 TTTGATTGTCGTTTTTGCATCTTC 57.491 33.333 0.00 0.00 0.00 2.87
5091 7441 5.437289 TGATTGTCGTTTTTGCATCTTCT 57.563 34.783 0.00 0.00 0.00 2.85
5092 7442 6.552859 TGATTGTCGTTTTTGCATCTTCTA 57.447 33.333 0.00 0.00 0.00 2.10
5094 7444 7.592938 TGATTGTCGTTTTTGCATCTTCTATT 58.407 30.769 0.00 0.00 0.00 1.73
5095 7445 7.750458 TGATTGTCGTTTTTGCATCTTCTATTC 59.250 33.333 0.00 0.00 0.00 1.75
5096 7446 6.801539 TGTCGTTTTTGCATCTTCTATTCT 57.198 33.333 0.00 0.00 0.00 2.40
5100 7450 9.607285 GTCGTTTTTGCATCTTCTATTCTTAAA 57.393 29.630 0.00 0.00 0.00 1.52
5101 7451 9.825972 TCGTTTTTGCATCTTCTATTCTTAAAG 57.174 29.630 0.00 0.00 0.00 1.85
5107 7457 9.507329 TTGCATCTTCTATTCTTAAAGTGTTCT 57.493 29.630 0.00 0.00 0.00 3.01
5108 7458 9.507329 TGCATCTTCTATTCTTAAAGTGTTCTT 57.493 29.630 0.00 0.00 35.14 2.52
5145 7495 7.544566 TCATAATTTTTAGATATCTCGTCCGCC 59.455 37.037 8.95 0.00 0.00 6.13
5148 7498 2.581216 TAGATATCTCGTCCGCCCTT 57.419 50.000 8.95 0.00 0.00 3.95
5158 7508 1.334689 CGTCCGCCCTTCTTTTTGTTC 60.335 52.381 0.00 0.00 0.00 3.18
5161 7511 2.295909 TCCGCCCTTCTTTTTGTTCATG 59.704 45.455 0.00 0.00 0.00 3.07
5162 7512 2.295909 CCGCCCTTCTTTTTGTTCATGA 59.704 45.455 0.00 0.00 0.00 3.07
5164 7514 4.559153 CGCCCTTCTTTTTGTTCATGATT 58.441 39.130 0.00 0.00 0.00 2.57
5165 7515 4.622740 CGCCCTTCTTTTTGTTCATGATTC 59.377 41.667 0.00 0.00 0.00 2.52
5190 7578 4.264253 CTGGCTGGACAGTGATGAAAATA 58.736 43.478 0.00 0.00 33.81 1.40
5199 7587 6.797033 GGACAGTGATGAAAATAACGAACAAG 59.203 38.462 0.00 0.00 0.00 3.16
5256 7644 2.358582 TGTGCCATGTTGTGAAAGTCTG 59.641 45.455 0.00 0.00 0.00 3.51
5274 7662 3.753815 TCTGCAATTCAGATGTTCACCA 58.246 40.909 4.18 0.00 46.34 4.17
5296 7684 5.127682 CCAACCAGATTTCCTCCAAAATAGG 59.872 44.000 0.00 0.00 33.41 2.57
5358 7755 6.414732 AGATATCTTGACGAAATTTCCACCA 58.585 36.000 12.54 5.34 0.00 4.17
5371 7768 1.923356 TCCACCAGGGCTTGAATTTC 58.077 50.000 0.00 0.00 36.21 2.17
5373 7770 1.631405 CACCAGGGCTTGAATTTCCA 58.369 50.000 0.00 0.00 0.00 3.53
5375 7772 2.368221 CACCAGGGCTTGAATTTCCAAA 59.632 45.455 0.00 0.00 0.00 3.28
5376 7773 3.008266 CACCAGGGCTTGAATTTCCAAAT 59.992 43.478 0.00 0.00 0.00 2.32
5378 7775 4.104579 ACCAGGGCTTGAATTTCCAAATTT 59.895 37.500 0.00 0.00 38.64 1.82
5379 7776 5.309282 ACCAGGGCTTGAATTTCCAAATTTA 59.691 36.000 0.00 0.00 38.64 1.40
5384 7809 8.825774 AGGGCTTGAATTTCCAAATTTATTACT 58.174 29.630 0.00 0.00 38.64 2.24
5400 7825 2.099141 TACTGATTGTGAGGTGCAGC 57.901 50.000 8.11 8.11 0.00 5.25
5406 7831 1.438651 TTGTGAGGTGCAGCGAATAC 58.561 50.000 10.78 8.81 0.00 1.89
5409 7834 0.391130 TGAGGTGCAGCGAATACCAC 60.391 55.000 10.78 0.00 36.94 4.16
5430 7855 3.009473 ACTCTCCAAAATTGCTCCTGCTA 59.991 43.478 0.00 0.00 40.48 3.49
5489 7914 2.289002 CGTTTTCTCTGCAGCTCAGTTT 59.711 45.455 9.47 0.00 43.32 2.66
5553 7985 7.141758 TCTTCCTTGATGTAAGCATAATCCT 57.858 36.000 0.00 0.00 35.07 3.24
5555 7987 7.500227 TCTTCCTTGATGTAAGCATAATCCTTG 59.500 37.037 0.00 0.00 35.07 3.61
5557 7989 5.300034 CCTTGATGTAAGCATAATCCTTGCA 59.700 40.000 0.00 0.00 42.62 4.08
5584 8016 8.341173 GCCTACTGATTTGATCTTCTATTGTTG 58.659 37.037 0.00 0.00 0.00 3.33
5604 8036 3.950397 TGCTGGTCTACCGATTTGAATT 58.050 40.909 0.00 0.00 39.43 2.17
5605 8037 3.689161 TGCTGGTCTACCGATTTGAATTG 59.311 43.478 0.00 0.00 39.43 2.32
5606 8038 3.487544 GCTGGTCTACCGATTTGAATTGC 60.488 47.826 0.00 0.00 39.43 3.56
5607 8039 3.941483 CTGGTCTACCGATTTGAATTGCT 59.059 43.478 0.00 0.00 39.43 3.91
5608 8040 3.938963 TGGTCTACCGATTTGAATTGCTC 59.061 43.478 0.00 0.00 39.43 4.26
5609 8041 3.001330 GGTCTACCGATTTGAATTGCTCG 59.999 47.826 0.00 0.00 0.00 5.03
5610 8042 3.863424 GTCTACCGATTTGAATTGCTCGA 59.137 43.478 0.00 0.00 33.07 4.04
5611 8043 3.863424 TCTACCGATTTGAATTGCTCGAC 59.137 43.478 0.00 0.00 33.07 4.20
5612 8044 2.699954 ACCGATTTGAATTGCTCGACT 58.300 42.857 0.00 0.00 33.07 4.18
5613 8045 3.857052 ACCGATTTGAATTGCTCGACTA 58.143 40.909 0.00 0.00 33.07 2.59
5614 8046 4.442706 ACCGATTTGAATTGCTCGACTAT 58.557 39.130 0.00 0.00 33.07 2.12
5615 8047 4.876107 ACCGATTTGAATTGCTCGACTATT 59.124 37.500 0.00 0.00 33.07 1.73
5616 8048 5.200454 CCGATTTGAATTGCTCGACTATTG 58.800 41.667 0.00 0.00 33.07 1.90
5617 8049 5.220662 CCGATTTGAATTGCTCGACTATTGT 60.221 40.000 0.00 0.00 33.07 2.71
5618 8050 6.250819 CGATTTGAATTGCTCGACTATTGTT 58.749 36.000 0.00 0.00 33.07 2.83
5619 8051 6.742718 CGATTTGAATTGCTCGACTATTGTTT 59.257 34.615 0.00 0.00 33.07 2.83
5620 8052 7.253092 CGATTTGAATTGCTCGACTATTGTTTG 60.253 37.037 0.00 0.00 33.07 2.93
5621 8053 5.295431 TGAATTGCTCGACTATTGTTTGG 57.705 39.130 0.00 0.00 0.00 3.28
5622 8054 4.759693 TGAATTGCTCGACTATTGTTTGGT 59.240 37.500 0.00 0.00 0.00 3.67
5623 8055 5.240623 TGAATTGCTCGACTATTGTTTGGTT 59.759 36.000 0.00 0.00 0.00 3.67
5624 8056 4.481930 TTGCTCGACTATTGTTTGGTTG 57.518 40.909 0.00 0.00 0.00 3.77
5625 8057 3.472652 TGCTCGACTATTGTTTGGTTGT 58.527 40.909 0.00 0.00 0.00 3.32
5626 8058 3.249799 TGCTCGACTATTGTTTGGTTGTG 59.750 43.478 0.00 0.00 0.00 3.33
5627 8059 3.250040 GCTCGACTATTGTTTGGTTGTGT 59.750 43.478 0.00 0.00 0.00 3.72
5628 8060 4.772434 CTCGACTATTGTTTGGTTGTGTG 58.228 43.478 0.00 0.00 0.00 3.82
5629 8061 4.193090 TCGACTATTGTTTGGTTGTGTGT 58.807 39.130 0.00 0.00 0.00 3.72
5630 8062 4.034626 TCGACTATTGTTTGGTTGTGTGTG 59.965 41.667 0.00 0.00 0.00 3.82
5631 8063 4.201871 CGACTATTGTTTGGTTGTGTGTGT 60.202 41.667 0.00 0.00 0.00 3.72
5632 8064 5.243426 ACTATTGTTTGGTTGTGTGTGTC 57.757 39.130 0.00 0.00 0.00 3.67
5633 8065 4.947388 ACTATTGTTTGGTTGTGTGTGTCT 59.053 37.500 0.00 0.00 0.00 3.41
5634 8066 4.799564 ATTGTTTGGTTGTGTGTGTCTT 57.200 36.364 0.00 0.00 0.00 3.01
5635 8067 3.567576 TGTTTGGTTGTGTGTGTCTTG 57.432 42.857 0.00 0.00 0.00 3.02
5636 8068 2.887783 TGTTTGGTTGTGTGTGTCTTGT 59.112 40.909 0.00 0.00 0.00 3.16
5637 8069 3.241701 GTTTGGTTGTGTGTGTCTTGTG 58.758 45.455 0.00 0.00 0.00 3.33
5638 8070 1.458398 TGGTTGTGTGTGTCTTGTGG 58.542 50.000 0.00 0.00 0.00 4.17
5639 8071 1.271652 TGGTTGTGTGTGTCTTGTGGT 60.272 47.619 0.00 0.00 0.00 4.16
5640 8072 1.132262 GGTTGTGTGTGTCTTGTGGTG 59.868 52.381 0.00 0.00 0.00 4.17
5641 8073 1.810151 GTTGTGTGTGTCTTGTGGTGT 59.190 47.619 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452496 CCATCAAGAACGGACTATGTCTCAT 60.452 44.000 0.00 0.00 32.47 2.90
23 24 4.142160 CCATCAAGAACGGACTATGTCTCA 60.142 45.833 0.00 0.00 32.47 3.27
26 27 2.866762 GCCATCAAGAACGGACTATGTC 59.133 50.000 0.00 0.00 0.00 3.06
28 29 2.158900 AGGCCATCAAGAACGGACTATG 60.159 50.000 5.01 0.00 35.96 2.23
47 48 2.836262 CAGAATCAGCAGAGCCTTAGG 58.164 52.381 0.00 0.00 0.00 2.69
50 51 0.327259 TGCAGAATCAGCAGAGCCTT 59.673 50.000 0.00 0.00 37.02 4.35
56 57 2.789917 GCGGTGCAGAATCAGCAG 59.210 61.111 0.00 0.00 43.63 4.24
69 70 2.416244 CTACCACACACACTCGCGGT 62.416 60.000 6.13 0.00 0.00 5.68
70 71 1.733041 CTACCACACACACTCGCGG 60.733 63.158 6.13 0.00 0.00 6.46
71 72 0.318360 TTCTACCACACACACTCGCG 60.318 55.000 0.00 0.00 0.00 5.87
72 73 1.525619 GTTTCTACCACACACACTCGC 59.474 52.381 0.00 0.00 0.00 5.03
73 74 2.816689 TGTTTCTACCACACACACTCG 58.183 47.619 0.00 0.00 0.00 4.18
74 75 4.127171 ACATGTTTCTACCACACACACTC 58.873 43.478 0.00 0.00 0.00 3.51
75 76 4.150897 ACATGTTTCTACCACACACACT 57.849 40.909 0.00 0.00 0.00 3.55
76 77 4.893424 AACATGTTTCTACCACACACAC 57.107 40.909 4.92 0.00 0.00 3.82
77 78 4.702612 ACAAACATGTTTCTACCACACACA 59.297 37.500 20.85 0.00 0.00 3.72
78 79 5.163703 TGACAAACATGTTTCTACCACACAC 60.164 40.000 20.85 4.43 0.00 3.82
79 80 4.944317 TGACAAACATGTTTCTACCACACA 59.056 37.500 20.85 9.25 0.00 3.72
93 94 2.165437 ACTTTGTTGCGGTGACAAACAT 59.835 40.909 6.86 0.00 40.84 2.71
102 103 0.667993 CATGGTGACTTTGTTGCGGT 59.332 50.000 0.00 0.00 0.00 5.68
137 138 7.361201 GATACTTTATCATATGCATGTGGCGTT 60.361 37.037 21.57 8.48 39.17 4.84
157 158 5.007332 ACGCAACTTTTCGTGAAAGATACTT 59.993 36.000 16.86 2.91 46.24 2.24
158 159 4.510340 ACGCAACTTTTCGTGAAAGATACT 59.490 37.500 16.86 0.00 46.24 2.12
171 172 3.492011 AGATAAACGTCGACGCAACTTTT 59.508 39.130 35.92 27.76 44.43 2.27
180 181 1.717194 TGGCCAAGATAAACGTCGAC 58.283 50.000 0.61 5.18 0.00 4.20
186 187 2.554893 TCACGGTTTGGCCAAGATAAAC 59.445 45.455 19.48 13.41 36.97 2.01
204 205 1.607148 GTGTGGGCAAAACCTAGTCAC 59.393 52.381 0.00 0.00 39.10 3.67
221 222 4.193826 AGTCAGAAGCGTAATCATGTGT 57.806 40.909 0.00 0.00 0.00 3.72
223 224 7.041721 TCATAAAGTCAGAAGCGTAATCATGT 58.958 34.615 0.00 0.00 0.00 3.21
256 280 5.450550 GGCAGTATCTATTTGAGTTTTGGCC 60.451 44.000 0.00 0.00 0.00 5.36
291 315 2.256117 AGGAGTTTCGGTCCAAACTG 57.744 50.000 18.44 0.00 44.91 3.16
311 335 6.127338 TGGTGACAATGTTGACAAATGGTTAA 60.127 34.615 0.00 0.00 37.44 2.01
331 355 3.762288 GCGGAGAGGTACATATATGGTGA 59.238 47.826 16.96 0.00 0.00 4.02
347 371 2.284331 TGGCCCTTGTAGCGGAGA 60.284 61.111 0.00 0.00 0.00 3.71
349 373 2.180159 GAAGTGGCCCTTGTAGCGGA 62.180 60.000 10.77 0.00 32.03 5.54
388 412 8.791327 ATTCTTTCCAAAACTGATGTTGTTTT 57.209 26.923 0.00 0.00 45.09 2.43
408 432 6.037172 CGGGATCGATAACACTTGAAATTCTT 59.963 38.462 0.00 0.00 39.00 2.52
411 435 5.424757 TCGGGATCGATAACACTTGAAATT 58.575 37.500 0.00 0.00 40.88 1.82
440 464 9.256228 ACTAACAAGTCTGTCTATATTGGAAGA 57.744 33.333 0.00 0.00 33.45 2.87
445 469 9.517609 GGTGTACTAACAAGTCTGTCTATATTG 57.482 37.037 0.00 0.00 37.36 1.90
451 475 3.887716 ACGGTGTACTAACAAGTCTGTCT 59.112 43.478 0.00 0.00 37.36 3.41
452 476 4.234530 ACGGTGTACTAACAAGTCTGTC 57.765 45.455 0.00 0.00 37.36 3.51
453 477 4.823989 ACTACGGTGTACTAACAAGTCTGT 59.176 41.667 0.00 0.00 37.36 3.41
454 478 5.152097 CACTACGGTGTACTAACAAGTCTG 58.848 45.833 0.00 0.00 37.36 3.51
455 479 4.320788 GCACTACGGTGTACTAACAAGTCT 60.321 45.833 0.00 0.00 44.65 3.24
459 483 4.487948 GATGCACTACGGTGTACTAACAA 58.512 43.478 0.00 0.00 44.65 2.83
466 490 1.491668 ATGGGATGCACTACGGTGTA 58.508 50.000 0.00 0.00 44.65 2.90
491 515 1.112916 TCAATGCGATCGGGGCTAGA 61.113 55.000 18.30 0.00 0.00 2.43
492 516 0.249868 TTCAATGCGATCGGGGCTAG 60.250 55.000 18.30 0.00 0.00 3.42
494 518 1.077787 TTTCAATGCGATCGGGGCT 60.078 52.632 18.30 0.00 0.00 5.19
495 519 1.064134 GTTTCAATGCGATCGGGGC 59.936 57.895 18.30 0.00 0.00 5.80
497 521 2.250188 GTTTGTTTCAATGCGATCGGG 58.750 47.619 18.30 0.00 0.00 5.14
498 522 2.927429 TGTTTGTTTCAATGCGATCGG 58.073 42.857 18.30 0.00 0.00 4.18
534 558 4.022416 TGTCTTATTTGCGCAATTGGAGTT 60.022 37.500 25.64 5.74 0.00 3.01
550 575 4.908601 TCCATGTTCCACAGTGTCTTAT 57.091 40.909 0.00 0.00 0.00 1.73
551 576 4.698201 TTCCATGTTCCACAGTGTCTTA 57.302 40.909 0.00 0.00 0.00 2.10
553 578 3.795688 ATTCCATGTTCCACAGTGTCT 57.204 42.857 0.00 0.00 0.00 3.41
561 586 4.248174 TCTTGGCATATTCCATGTTCCA 57.752 40.909 7.08 0.00 35.77 3.53
588 615 0.320374 TTCTCCCTGCAACGGTGTAG 59.680 55.000 12.09 12.09 37.23 2.74
613 640 3.207778 TGCGTGGTAAGTGTTTAAGCTT 58.792 40.909 3.48 3.48 0.00 3.74
614 641 2.841215 TGCGTGGTAAGTGTTTAAGCT 58.159 42.857 0.00 0.00 0.00 3.74
615 642 3.612472 TTGCGTGGTAAGTGTTTAAGC 57.388 42.857 0.00 0.00 0.00 3.09
617 644 4.911053 CACTTTGCGTGGTAAGTGTTTAA 58.089 39.130 0.00 0.00 43.83 1.52
618 645 4.539509 CACTTTGCGTGGTAAGTGTTTA 57.460 40.909 0.00 0.00 43.83 2.01
619 646 3.414549 CACTTTGCGTGGTAAGTGTTT 57.585 42.857 0.00 0.00 43.83 2.83
628 655 1.670811 AGAGTGAAACACTTTGCGTGG 59.329 47.619 5.88 0.00 45.44 4.94
632 659 3.251004 CCTGGTAGAGTGAAACACTTTGC 59.749 47.826 5.88 4.27 45.44 3.68
647 674 1.258445 ACCTTGGCGAGTCCTGGTAG 61.258 60.000 0.12 0.00 39.40 3.18
670 698 4.527427 TGATTTCTGGTGATGCATGGAAAA 59.473 37.500 2.46 0.00 0.00 2.29
702 908 5.652994 TTTGGGATGTTTATTTTCTCGGG 57.347 39.130 0.00 0.00 0.00 5.14
705 911 6.683715 TCCGTTTTGGGATGTTTATTTTCTC 58.316 36.000 0.00 0.00 38.76 2.87
706 912 6.658188 TCCGTTTTGGGATGTTTATTTTCT 57.342 33.333 0.00 0.00 38.76 2.52
763 969 0.599728 GATCTGATCCTGCGGCTGAC 60.600 60.000 8.57 0.87 0.00 3.51
868 1075 1.001406 GGAGGATTACATGAGGCGGAG 59.999 57.143 0.00 0.00 0.00 4.63
877 1084 4.790790 AGGGTTTGAAGAGGAGGATTACAT 59.209 41.667 0.00 0.00 0.00 2.29
906 1115 1.602237 GCGGGTCAAAGGAGGATGA 59.398 57.895 0.00 0.00 0.00 2.92
908 1117 2.998949 GGCGGGTCAAAGGAGGAT 59.001 61.111 0.00 0.00 0.00 3.24
915 1124 4.572571 AAGTGGCGGCGGGTCAAA 62.573 61.111 9.78 0.00 0.00 2.69
933 1150 1.005228 TCTTCTTCCGGGGTAGGAGA 58.995 55.000 0.00 3.72 41.98 3.71
934 1151 1.861982 TTCTTCTTCCGGGGTAGGAG 58.138 55.000 0.00 1.02 41.98 3.69
957 1184 2.297597 GAGGCTCTCTACTGTGTGTGTT 59.702 50.000 7.40 0.00 0.00 3.32
982 1213 3.898509 CTCTCGCGCTCAGGGGAG 61.899 72.222 5.56 3.31 45.43 4.30
1251 1486 5.240891 TGAAAACAGTAAGCAGATCTGAGG 58.759 41.667 27.04 9.99 33.93 3.86
1299 1539 4.614946 AGAACACACTACACGGAGTAAAC 58.385 43.478 0.00 0.00 41.61 2.01
1320 1560 2.650322 ACCCCATGCAAATAACGGTAG 58.350 47.619 0.00 0.00 0.00 3.18
1324 1564 4.862018 CACTAAAACCCCATGCAAATAACG 59.138 41.667 0.00 0.00 0.00 3.18
1325 1565 5.789521 ACACTAAAACCCCATGCAAATAAC 58.210 37.500 0.00 0.00 0.00 1.89
1339 1579 6.567132 CGACCAGGACCAAATAACACTAAAAC 60.567 42.308 0.00 0.00 0.00 2.43
1343 1583 3.618019 GCGACCAGGACCAAATAACACTA 60.618 47.826 0.00 0.00 0.00 2.74
1344 1584 2.874457 GCGACCAGGACCAAATAACACT 60.874 50.000 0.00 0.00 0.00 3.55
1345 1585 1.467342 GCGACCAGGACCAAATAACAC 59.533 52.381 0.00 0.00 0.00 3.32
1346 1586 1.349688 AGCGACCAGGACCAAATAACA 59.650 47.619 0.00 0.00 0.00 2.41
1347 1587 2.109425 AGCGACCAGGACCAAATAAC 57.891 50.000 0.00 0.00 0.00 1.89
1350 1603 1.906574 TCTAAGCGACCAGGACCAAAT 59.093 47.619 0.00 0.00 0.00 2.32
1373 1626 3.701604 CTCTGCGGCTACGACCACC 62.702 68.421 0.00 0.00 44.60 4.61
1385 1659 0.725686 CCAGCACAAGAATCTCTGCG 59.274 55.000 7.09 3.73 0.00 5.18
1386 1660 0.450983 GCCAGCACAAGAATCTCTGC 59.549 55.000 5.08 5.08 0.00 4.26
1387 1661 1.817357 TGCCAGCACAAGAATCTCTG 58.183 50.000 0.00 0.00 0.00 3.35
1395 1669 0.387622 CGAACCATTGCCAGCACAAG 60.388 55.000 0.00 0.00 31.96 3.16
1449 1730 0.393537 CCAACAGATCTGGCACCTCC 60.394 60.000 26.08 0.00 34.19 4.30
1467 1748 7.344871 ACTGCCCAGGTCATATATACTAATACC 59.655 40.741 0.00 0.00 0.00 2.73
1485 1772 2.034687 CAGGACCCAACTGCCCAG 59.965 66.667 0.00 0.00 0.00 4.45
1488 1775 2.215942 ATTAACAGGACCCAACTGCC 57.784 50.000 0.00 0.00 39.55 4.85
1497 1784 5.163499 TGTGGAACCAAACAATTAACAGGAC 60.163 40.000 0.00 0.00 34.36 3.85
1500 1787 7.881142 TCTATGTGGAACCAAACAATTAACAG 58.119 34.615 0.00 0.00 34.36 3.16
1503 1790 8.877864 AGATCTATGTGGAACCAAACAATTAA 57.122 30.769 0.00 0.00 34.36 1.40
1505 1792 9.479549 AATAGATCTATGTGGAACCAAACAATT 57.520 29.630 16.01 0.00 34.36 2.32
1506 1793 9.479549 AAATAGATCTATGTGGAACCAAACAAT 57.520 29.630 16.01 0.00 34.36 2.71
1540 1831 2.303022 ACAACTCACTGTCCGGATCAAT 59.697 45.455 7.81 0.00 0.00 2.57
1547 1838 3.869246 AGTGTTAAACAACTCACTGTCCG 59.131 43.478 0.00 0.00 39.27 4.79
1629 2257 6.549952 CAGGACAAAGTAATCAATCAAGCTC 58.450 40.000 0.00 0.00 0.00 4.09
1632 2260 5.183713 TGGCAGGACAAAGTAATCAATCAAG 59.816 40.000 0.00 0.00 0.00 3.02
1633 2261 5.076182 TGGCAGGACAAAGTAATCAATCAA 58.924 37.500 0.00 0.00 0.00 2.57
1635 2263 5.183904 ACTTGGCAGGACAAAGTAATCAATC 59.816 40.000 2.65 0.00 0.00 2.67
1636 2264 5.047802 CACTTGGCAGGACAAAGTAATCAAT 60.048 40.000 2.65 0.00 0.00 2.57
1643 2271 2.419057 GCACTTGGCAGGACAAAGT 58.581 52.632 2.65 0.00 43.97 2.66
1679 2307 4.202441 AGGCAGGCAATGTAGATTTACAG 58.798 43.478 2.27 0.00 42.72 2.74
1681 2309 4.399303 ACAAGGCAGGCAATGTAGATTTAC 59.601 41.667 3.88 0.00 0.00 2.01
1766 2427 5.615925 AATCCACCAGTAGTATTCTCCAC 57.384 43.478 0.00 0.00 0.00 4.02
1781 2442 3.165071 AGTTCCAATCCACAAATCCACC 58.835 45.455 0.00 0.00 0.00 4.61
1783 2444 6.828273 CAGTATAGTTCCAATCCACAAATCCA 59.172 38.462 0.00 0.00 0.00 3.41
1788 2503 8.084985 TGATACAGTATAGTTCCAATCCACAA 57.915 34.615 0.00 0.00 0.00 3.33
1805 2520 6.299141 ACAACCAAGTGAGATTTGATACAGT 58.701 36.000 0.00 0.00 0.00 3.55
1818 2533 5.185454 CAAGCCTATCATACAACCAAGTGA 58.815 41.667 0.00 0.00 0.00 3.41
1882 2613 1.388547 TTGGCCGAGAATAACATGCC 58.611 50.000 0.00 0.00 39.33 4.40
1890 2624 2.610232 GCAACACAAATTGGCCGAGAAT 60.610 45.455 0.00 0.00 0.00 2.40
1895 2629 1.580815 AAAGCAACACAAATTGGCCG 58.419 45.000 0.00 0.00 0.00 6.13
1995 2730 6.149640 CCATCCATCATAGATTCAGCAGAAAG 59.850 42.308 0.00 0.00 37.29 2.62
2008 2744 1.891150 GCCCAAAGCCATCCATCATAG 59.109 52.381 0.00 0.00 34.35 2.23
2128 2870 1.631405 TGGGCACATTTAGCTTGCTT 58.369 45.000 7.24 0.00 36.46 3.91
2157 2899 5.922544 CACAGATTGTTCAGATTGAAAACCC 59.077 40.000 0.00 0.00 38.22 4.11
2208 2965 6.357579 ACCTGCACATCAAAATCCAATAAA 57.642 33.333 0.00 0.00 0.00 1.40
2228 2985 6.625532 AAAAGGATAATTTGCCATGAACCT 57.374 33.333 0.00 0.00 0.00 3.50
2253 3025 4.955925 ATGTGACAAACGAACAACAGAA 57.044 36.364 0.00 0.00 0.00 3.02
2411 3238 4.831698 TTGCACAGCAAAACAGGC 57.168 50.000 1.36 0.00 45.96 4.85
2538 3369 3.324268 TGGCATTTGGTGATGAACATTGT 59.676 39.130 0.00 0.00 0.00 2.71
2596 3450 0.460459 TGCCACGTTTCGAGACACAA 60.460 50.000 6.91 0.00 0.00 3.33
2761 3629 5.761234 ACATGGTTCGCGTATATAAATGGTT 59.239 36.000 5.77 0.00 0.00 3.67
2816 3686 5.740290 TGCTACTTACTTAAACTGAGGCT 57.260 39.130 0.00 0.00 0.00 4.58
2841 3716 8.190784 CCAACCATTATATGAAAAGTTCAGTCC 58.809 37.037 0.00 0.00 43.98 3.85
2844 3719 8.522830 ACACCAACCATTATATGAAAAGTTCAG 58.477 33.333 0.00 0.00 43.98 3.02
2891 3781 2.425312 TCTGCACAAAACGGTTCATGTT 59.575 40.909 8.91 0.00 0.00 2.71
2900 3791 1.411394 CTTGGCATCTGCACAAAACG 58.589 50.000 4.33 0.00 44.36 3.60
3537 4428 2.665603 GTCTGGGCAGTGGAGGAC 59.334 66.667 0.00 0.00 0.00 3.85
3951 4854 1.886542 GTGGTGTTCCTTGGGATCAAC 59.113 52.381 5.91 5.91 39.00 3.18
4077 4980 0.320771 GCTCGAACTTGCCAAGGAGA 60.321 55.000 9.64 4.23 0.00 3.71
4329 5232 0.321996 AGTTCTCCAGGGCGTTCTTC 59.678 55.000 0.00 0.00 0.00 2.87
4464 5367 2.359230 GCCTCAGCGAGCTGGTTT 60.359 61.111 22.93 0.00 43.75 3.27
4518 5421 0.392863 CGATGATGGGGTTGCACAGA 60.393 55.000 0.00 0.00 0.00 3.41
4632 5538 6.201044 CAGAACATCAACTCGTTTAGTCAACT 59.799 38.462 0.00 0.00 37.50 3.16
4648 5555 1.527034 GCCTCTGCAACAGAACATCA 58.473 50.000 0.00 0.00 40.18 3.07
4700 5615 6.832384 ACAACCCAGTCTAAGATAACGATAGA 59.168 38.462 0.00 0.00 41.38 1.98
4713 5628 1.513858 AACCACCACAACCCAGTCTA 58.486 50.000 0.00 0.00 0.00 2.59
4873 5810 6.815641 GCTCGGTCATACAGATCATCAATATT 59.184 38.462 0.00 0.00 0.00 1.28
4875 5812 5.336770 GGCTCGGTCATACAGATCATCAATA 60.337 44.000 0.00 0.00 0.00 1.90
4882 5819 2.030363 CAGAGGCTCGGTCATACAGATC 60.030 54.545 9.22 0.00 0.00 2.75
4883 5820 1.959985 CAGAGGCTCGGTCATACAGAT 59.040 52.381 9.22 0.00 0.00 2.90
4945 5974 2.702592 ACAGACCAGTTTCCAAACGA 57.297 45.000 0.00 0.00 43.51 3.85
4946 5975 3.775661 AAACAGACCAGTTTCCAAACG 57.224 42.857 0.00 0.00 43.51 3.60
4951 5980 5.324784 ACAAAGAAAACAGACCAGTTTCC 57.675 39.130 0.00 0.00 40.60 3.13
4952 5981 6.386654 TGAACAAAGAAAACAGACCAGTTTC 58.613 36.000 0.00 0.00 40.60 2.78
4953 5982 6.208599 TCTGAACAAAGAAAACAGACCAGTTT 59.791 34.615 0.00 0.00 43.13 2.66
4954 5983 5.710099 TCTGAACAAAGAAAACAGACCAGTT 59.290 36.000 0.00 0.00 33.57 3.16
4956 5985 5.818136 TCTGAACAAAGAAAACAGACCAG 57.182 39.130 0.00 0.00 33.57 4.00
4963 6057 4.676924 CGAAGCCATCTGAACAAAGAAAAC 59.323 41.667 0.00 0.00 0.00 2.43
4975 6069 5.817816 AGTCCTAAAATTACGAAGCCATCTG 59.182 40.000 0.00 0.00 0.00 2.90
4976 6070 5.990668 AGTCCTAAAATTACGAAGCCATCT 58.009 37.500 0.00 0.00 0.00 2.90
4978 6072 6.433093 ACAAAGTCCTAAAATTACGAAGCCAT 59.567 34.615 0.00 0.00 0.00 4.40
4979 6073 5.766174 ACAAAGTCCTAAAATTACGAAGCCA 59.234 36.000 0.00 0.00 0.00 4.75
4980 6074 6.250344 ACAAAGTCCTAAAATTACGAAGCC 57.750 37.500 0.00 0.00 0.00 4.35
4981 6075 8.476925 CAAAACAAAGTCCTAAAATTACGAAGC 58.523 33.333 0.00 0.00 0.00 3.86
4982 6076 9.511144 ACAAAACAAAGTCCTAAAATTACGAAG 57.489 29.630 0.00 0.00 0.00 3.79
4983 6077 9.857957 AACAAAACAAAGTCCTAAAATTACGAA 57.142 25.926 0.00 0.00 0.00 3.85
4985 6079 9.511144 AGAACAAAACAAAGTCCTAAAATTACG 57.489 29.630 0.00 0.00 0.00 3.18
4995 6104 4.265320 CGCTTTCAGAACAAAACAAAGTCC 59.735 41.667 0.00 0.00 0.00 3.85
5017 6126 2.897792 AGGAGGTCCTCGATGCTTTCG 61.898 57.143 12.91 3.61 44.77 3.46
5024 6207 1.000993 ACTGCAGGAGGTCCTCGAT 59.999 57.895 19.93 0.99 46.65 3.59
5040 6223 5.964758 TGTTCAATTTCAAAAGCACAGACT 58.035 33.333 0.00 0.00 0.00 3.24
5045 6228 5.723492 AAGCTGTTCAATTTCAAAAGCAC 57.277 34.783 10.45 0.00 0.00 4.40
5046 6229 6.370994 TCAAAAGCTGTTCAATTTCAAAAGCA 59.629 30.769 10.45 0.00 0.00 3.91
5047 6230 6.774084 TCAAAAGCTGTTCAATTTCAAAAGC 58.226 32.000 0.00 1.97 0.00 3.51
5048 6231 9.217223 CAATCAAAAGCTGTTCAATTTCAAAAG 57.783 29.630 0.00 0.00 0.00 2.27
5049 6232 8.728833 ACAATCAAAAGCTGTTCAATTTCAAAA 58.271 25.926 0.00 0.00 0.00 2.44
5053 6236 6.198966 ACGACAATCAAAAGCTGTTCAATTTC 59.801 34.615 0.00 0.00 0.00 2.17
5119 7469 7.544566 GGCGGACGAGATATCTAAAAATTATGA 59.455 37.037 4.89 0.00 0.00 2.15
5120 7470 7.201530 GGGCGGACGAGATATCTAAAAATTATG 60.202 40.741 4.89 0.00 0.00 1.90
5121 7471 6.817140 GGGCGGACGAGATATCTAAAAATTAT 59.183 38.462 4.89 0.00 0.00 1.28
5123 7473 4.995487 GGGCGGACGAGATATCTAAAAATT 59.005 41.667 4.89 0.00 0.00 1.82
5124 7474 4.283722 AGGGCGGACGAGATATCTAAAAAT 59.716 41.667 4.89 0.00 0.00 1.82
5125 7475 3.640029 AGGGCGGACGAGATATCTAAAAA 59.360 43.478 4.89 0.00 0.00 1.94
5126 7476 3.228453 AGGGCGGACGAGATATCTAAAA 58.772 45.455 4.89 0.00 0.00 1.52
5145 7495 6.365247 CAGCAGAATCATGAACAAAAAGAAGG 59.635 38.462 0.00 0.00 0.00 3.46
5148 7498 5.775686 CCAGCAGAATCATGAACAAAAAGA 58.224 37.500 0.00 0.00 0.00 2.52
5158 7508 1.022735 GTCCAGCCAGCAGAATCATG 58.977 55.000 0.00 0.00 0.00 3.07
5161 7511 0.035630 ACTGTCCAGCCAGCAGAATC 60.036 55.000 0.00 0.00 35.83 2.52
5162 7512 0.322277 CACTGTCCAGCCAGCAGAAT 60.322 55.000 0.00 0.00 35.83 2.40
5164 7514 1.196766 ATCACTGTCCAGCCAGCAGA 61.197 55.000 0.00 0.00 35.83 4.26
5165 7515 1.025113 CATCACTGTCCAGCCAGCAG 61.025 60.000 0.00 0.00 35.83 4.24
5190 7578 3.194005 AGATGGTGTGTCTTGTTCGTT 57.806 42.857 0.00 0.00 0.00 3.85
5199 7587 1.002087 AGTCCCGAAAGATGGTGTGTC 59.998 52.381 0.00 0.00 0.00 3.67
5256 7644 3.005684 TGGTTGGTGAACATCTGAATTGC 59.994 43.478 0.00 0.00 33.27 3.56
5268 7656 2.445145 TGGAGGAAATCTGGTTGGTGAA 59.555 45.455 0.00 0.00 0.00 3.18
5269 7657 2.061848 TGGAGGAAATCTGGTTGGTGA 58.938 47.619 0.00 0.00 0.00 4.02
5274 7662 5.952347 GTCCTATTTTGGAGGAAATCTGGTT 59.048 40.000 0.00 0.00 44.77 3.67
5337 7725 4.941263 CCTGGTGGAAATTTCGTCAAGATA 59.059 41.667 11.95 0.00 34.57 1.98
5341 7729 2.235016 CCCTGGTGGAAATTTCGTCAA 58.765 47.619 11.95 0.86 35.39 3.18
5346 7743 2.247358 TCAAGCCCTGGTGGAAATTTC 58.753 47.619 9.83 9.83 35.39 2.17
5358 7755 8.825774 AGTAATAAATTTGGAAATTCAAGCCCT 58.174 29.630 0.00 0.00 37.62 5.19
5371 7768 7.489113 GCACCTCACAATCAGTAATAAATTTGG 59.511 37.037 0.00 0.00 0.00 3.28
5373 7770 8.121305 TGCACCTCACAATCAGTAATAAATTT 57.879 30.769 0.00 0.00 0.00 1.82
5375 7772 6.183360 GCTGCACCTCACAATCAGTAATAAAT 60.183 38.462 0.00 0.00 0.00 1.40
5376 7773 5.123820 GCTGCACCTCACAATCAGTAATAAA 59.876 40.000 0.00 0.00 0.00 1.40
5378 7775 4.191544 GCTGCACCTCACAATCAGTAATA 58.808 43.478 0.00 0.00 0.00 0.98
5379 7776 3.012518 GCTGCACCTCACAATCAGTAAT 58.987 45.455 0.00 0.00 0.00 1.89
5384 7809 0.250252 TTCGCTGCACCTCACAATCA 60.250 50.000 0.00 0.00 0.00 2.57
5389 7814 0.391130 TGGTATTCGCTGCACCTCAC 60.391 55.000 8.16 0.00 33.28 3.51
5400 7825 4.396166 AGCAATTTTGGAGAGTGGTATTCG 59.604 41.667 0.00 0.00 0.00 3.34
5406 7831 2.490903 CAGGAGCAATTTTGGAGAGTGG 59.509 50.000 0.00 0.00 0.00 4.00
5409 7834 2.444421 AGCAGGAGCAATTTTGGAGAG 58.556 47.619 0.00 0.00 45.49 3.20
5460 7885 2.124903 TGCAGAGAAAACGACGACTTC 58.875 47.619 0.00 3.68 0.00 3.01
5461 7886 2.128035 CTGCAGAGAAAACGACGACTT 58.872 47.619 8.42 0.00 0.00 3.01
5489 7914 1.126948 TGCCATCACTGGACTCACCA 61.127 55.000 0.00 0.00 46.37 4.17
5512 7937 7.499232 TCAAGGAAGAAAACTTAGGTCTCAAAG 59.501 37.037 0.00 0.00 0.00 2.77
5523 7948 6.959639 TGCTTACATCAAGGAAGAAAACTT 57.040 33.333 0.00 0.00 34.56 2.66
5553 7985 4.226427 AGATCAAATCAGTAGGCTGCAA 57.774 40.909 5.14 0.00 42.29 4.08
5555 7987 4.450053 AGAAGATCAAATCAGTAGGCTGC 58.550 43.478 0.00 0.00 42.29 5.25
5557 7989 7.800092 ACAATAGAAGATCAAATCAGTAGGCT 58.200 34.615 0.00 0.00 0.00 4.58
5584 8016 3.487544 GCAATTCAAATCGGTAGACCAGC 60.488 47.826 0.00 0.00 35.14 4.85
5604 8036 3.249799 CACAACCAAACAATAGTCGAGCA 59.750 43.478 0.00 0.00 0.00 4.26
5605 8037 3.250040 ACACAACCAAACAATAGTCGAGC 59.750 43.478 0.00 0.00 0.00 5.03
5606 8038 4.272504 ACACACAACCAAACAATAGTCGAG 59.727 41.667 0.00 0.00 0.00 4.04
5607 8039 4.034626 CACACACAACCAAACAATAGTCGA 59.965 41.667 0.00 0.00 0.00 4.20
5608 8040 4.201871 ACACACACAACCAAACAATAGTCG 60.202 41.667 0.00 0.00 0.00 4.18
5609 8041 5.065988 AGACACACACAACCAAACAATAGTC 59.934 40.000 0.00 0.00 0.00 2.59
5610 8042 4.947388 AGACACACACAACCAAACAATAGT 59.053 37.500 0.00 0.00 0.00 2.12
5611 8043 5.499139 AGACACACACAACCAAACAATAG 57.501 39.130 0.00 0.00 0.00 1.73
5612 8044 5.184096 ACAAGACACACACAACCAAACAATA 59.816 36.000 0.00 0.00 0.00 1.90
5613 8045 4.021544 ACAAGACACACACAACCAAACAAT 60.022 37.500 0.00 0.00 0.00 2.71
5614 8046 3.319405 ACAAGACACACACAACCAAACAA 59.681 39.130 0.00 0.00 0.00 2.83
5615 8047 2.887783 ACAAGACACACACAACCAAACA 59.112 40.909 0.00 0.00 0.00 2.83
5616 8048 3.241701 CACAAGACACACACAACCAAAC 58.758 45.455 0.00 0.00 0.00 2.93
5617 8049 2.230025 CCACAAGACACACACAACCAAA 59.770 45.455 0.00 0.00 0.00 3.28
5618 8050 1.815613 CCACAAGACACACACAACCAA 59.184 47.619 0.00 0.00 0.00 3.67
5619 8051 1.271652 ACCACAAGACACACACAACCA 60.272 47.619 0.00 0.00 0.00 3.67
5620 8052 1.132262 CACCACAAGACACACACAACC 59.868 52.381 0.00 0.00 0.00 3.77
5621 8053 1.810151 ACACCACAAGACACACACAAC 59.190 47.619 0.00 0.00 0.00 3.32
5622 8054 2.192664 ACACCACAAGACACACACAA 57.807 45.000 0.00 0.00 0.00 3.33
5623 8055 3.946604 ACACCACAAGACACACACA 57.053 47.368 0.00 0.00 0.00 3.72


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.