Multiple sequence alignment - TraesCS6B01G367600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G367600 chr6B 100.000 6135 0 0 1 6135 641393814 641399948 0.000000e+00 11330.0
1 TraesCS6B01G367600 chr6B 90.151 1127 98 7 2847 3967 82743855 82742736 0.000000e+00 1454.0
2 TraesCS6B01G367600 chr6B 98.300 647 10 1 5490 6135 12871534 12872180 0.000000e+00 1133.0
3 TraesCS6B01G367600 chr6B 98.128 641 11 1 5495 6135 378957880 378957241 0.000000e+00 1116.0
4 TraesCS6B01G367600 chr6B 89.134 635 64 4 1904 2536 82744482 82743851 0.000000e+00 785.0
5 TraesCS6B01G367600 chr6B 82.833 600 89 8 894 1487 82746400 82745809 5.450000e-145 525.0
6 TraesCS6B01G367600 chr6B 90.421 261 22 3 524 782 641393987 641394246 2.120000e-89 340.0
7 TraesCS6B01G367600 chr6B 90.421 261 22 3 174 433 641394337 641394595 2.120000e-89 340.0
8 TraesCS6B01G367600 chr6B 79.070 258 33 13 196 435 687502101 687502355 2.290000e-34 158.0
9 TraesCS6B01G367600 chr6B 97.778 45 1 0 5204 5248 641398962 641399006 1.830000e-10 78.7
10 TraesCS6B01G367600 chr6B 97.778 45 1 0 5149 5193 641399017 641399061 1.830000e-10 78.7
11 TraesCS6B01G367600 chr6A 96.115 4427 114 21 811 5193 571019786 571024198 0.000000e+00 7169.0
12 TraesCS6B01G367600 chr6A 92.683 287 12 1 5204 5490 571024154 571024431 7.400000e-109 405.0
13 TraesCS6B01G367600 chr6D 97.283 3349 87 4 1847 5193 426100672 426104018 0.000000e+00 5677.0
14 TraesCS6B01G367600 chr6D 90.713 1066 37 21 811 1845 426099181 426100215 0.000000e+00 1363.0
15 TraesCS6B01G367600 chr6D 95.122 287 10 1 5204 5490 426103974 426104256 3.370000e-122 449.0
16 TraesCS6B01G367600 chr6D 76.835 436 44 25 1 432 426098798 426099180 6.280000e-45 193.0
17 TraesCS6B01G367600 chr7D 88.449 2857 279 26 2342 5193 39710652 39713462 0.000000e+00 3400.0
18 TraesCS6B01G367600 chr7D 86.149 888 106 10 4255 5139 40001876 40002749 0.000000e+00 942.0
19 TraesCS6B01G367600 chr7D 86.358 821 100 11 3555 4374 39633800 39634609 0.000000e+00 885.0
20 TraesCS6B01G367600 chr7D 92.148 433 33 1 4761 5193 39635337 39635768 1.460000e-170 610.0
21 TraesCS6B01G367600 chr7D 93.069 303 20 1 2035 2337 39705320 39705621 5.640000e-120 442.0
22 TraesCS6B01G367600 chr7D 91.228 285 25 0 4421 4705 39635060 39635344 7.460000e-104 388.0
23 TraesCS6B01G367600 chr7D 87.742 310 29 7 894 1199 39723007 39723311 2.720000e-93 353.0
24 TraesCS6B01G367600 chr7D 93.333 195 10 3 5298 5490 39729217 39729410 1.010000e-72 285.0
25 TraesCS6B01G367600 chr7D 88.596 228 15 6 2004 2223 39723810 39724034 3.650000e-67 267.0
26 TraesCS6B01G367600 chr7D 87.395 119 14 1 5272 5390 40002779 40002896 1.070000e-27 135.0
27 TraesCS6B01G367600 chr7D 80.272 147 17 7 4061 4198 15934324 15934467 3.910000e-17 100.0
28 TraesCS6B01G367600 chr7D 92.593 54 2 2 5204 5257 39713420 39713471 6.590000e-10 76.8
29 TraesCS6B01G367600 chr7A 90.389 1956 173 9 2084 4030 39587583 39589532 0.000000e+00 2556.0
30 TraesCS6B01G367600 chr7A 89.492 1161 107 8 4038 5193 39592145 39593295 0.000000e+00 1454.0
31 TraesCS6B01G367600 chr7A 80.799 651 115 9 5490 6135 367001510 367002155 9.180000e-138 501.0
32 TraesCS6B01G367600 chr7A 94.515 237 13 0 5204 5440 39593251 39593487 3.490000e-97 366.0
33 TraesCS6B01G367600 chr4A 86.330 1229 127 16 3973 5193 645860409 645861604 0.000000e+00 1301.0
34 TraesCS6B01G367600 chr4A 93.380 287 18 1 5204 5490 645861560 645861845 2.040000e-114 424.0
35 TraesCS6B01G367600 chr5B 99.065 642 6 0 5490 6131 576253883 576254524 0.000000e+00 1153.0
36 TraesCS6B01G367600 chr5B 89.915 585 59 0 5551 6135 571884010 571883426 0.000000e+00 754.0
37 TraesCS6B01G367600 chr2A 97.364 645 17 0 5491 6135 654433939 654434583 0.000000e+00 1098.0
38 TraesCS6B01G367600 chr4D 88.235 646 76 0 5490 6135 471203066 471203711 0.000000e+00 773.0
39 TraesCS6B01G367600 chr1D 81.633 637 109 7 5490 6122 192870642 192871274 7.050000e-144 521.0
40 TraesCS6B01G367600 chr7B 80.595 639 114 9 5490 6122 536010432 536009798 9.250000e-133 484.0
41 TraesCS6B01G367600 chr3A 75.192 391 67 19 465 828 127083818 127083431 2.290000e-34 158.0
42 TraesCS6B01G367600 chr5D 77.055 292 50 15 545 824 51643735 51644021 1.070000e-32 152.0
43 TraesCS6B01G367600 chr5A 81.818 187 19 7 1641 1826 566219274 566219446 6.410000e-30 143.0
44 TraesCS6B01G367600 chr3D 81.690 142 16 7 4064 4198 584861171 584861033 6.500000e-20 110.0
45 TraesCS6B01G367600 chr1B 86.441 59 4 3 643 697 60251552 60251610 1.850000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G367600 chr6B 641393814 641399948 6134 False 11330.000000 11330 100.000000 1 6135 1 chr6B.!!$F2 6134
1 TraesCS6B01G367600 chr6B 12871534 12872180 646 False 1133.000000 1133 98.300000 5490 6135 1 chr6B.!!$F1 645
2 TraesCS6B01G367600 chr6B 378957241 378957880 639 True 1116.000000 1116 98.128000 5495 6135 1 chr6B.!!$R1 640
3 TraesCS6B01G367600 chr6B 82742736 82746400 3664 True 921.333333 1454 87.372667 894 3967 3 chr6B.!!$R2 3073
4 TraesCS6B01G367600 chr6B 641393987 641394595 608 False 340.000000 340 90.421000 174 782 2 chr6B.!!$F4 608
5 TraesCS6B01G367600 chr6A 571019786 571024431 4645 False 3787.000000 7169 94.399000 811 5490 2 chr6A.!!$F1 4679
6 TraesCS6B01G367600 chr6D 426098798 426104256 5458 False 1920.500000 5677 89.988250 1 5490 4 chr6D.!!$F1 5489
7 TraesCS6B01G367600 chr7D 39710652 39713471 2819 False 1738.400000 3400 90.521000 2342 5257 2 chr7D.!!$F5 2915
8 TraesCS6B01G367600 chr7D 39633800 39635768 1968 False 627.666667 885 89.911333 3555 5193 3 chr7D.!!$F4 1638
9 TraesCS6B01G367600 chr7D 40001876 40002896 1020 False 538.500000 942 86.772000 4255 5390 2 chr7D.!!$F7 1135
10 TraesCS6B01G367600 chr7D 39723007 39724034 1027 False 310.000000 353 88.169000 894 2223 2 chr7D.!!$F6 1329
11 TraesCS6B01G367600 chr7A 39587583 39593487 5904 False 1458.666667 2556 91.465333 2084 5440 3 chr7A.!!$F2 3356
12 TraesCS6B01G367600 chr7A 367001510 367002155 645 False 501.000000 501 80.799000 5490 6135 1 chr7A.!!$F1 645
13 TraesCS6B01G367600 chr4A 645860409 645861845 1436 False 862.500000 1301 89.855000 3973 5490 2 chr4A.!!$F1 1517
14 TraesCS6B01G367600 chr5B 576253883 576254524 641 False 1153.000000 1153 99.065000 5490 6131 1 chr5B.!!$F1 641
15 TraesCS6B01G367600 chr5B 571883426 571884010 584 True 754.000000 754 89.915000 5551 6135 1 chr5B.!!$R1 584
16 TraesCS6B01G367600 chr2A 654433939 654434583 644 False 1098.000000 1098 97.364000 5491 6135 1 chr2A.!!$F1 644
17 TraesCS6B01G367600 chr4D 471203066 471203711 645 False 773.000000 773 88.235000 5490 6135 1 chr4D.!!$F1 645
18 TraesCS6B01G367600 chr1D 192870642 192871274 632 False 521.000000 521 81.633000 5490 6122 1 chr1D.!!$F1 632
19 TraesCS6B01G367600 chr7B 536009798 536010432 634 True 484.000000 484 80.595000 5490 6122 1 chr7B.!!$R1 632

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
450 811 0.031857 TTTTTGCATGCTGTCCCACG 59.968 50.0 20.33 0.0 0.0 4.94 F
581 942 0.036105 AGTGTCGCATGCATCCTCAA 60.036 50.0 19.57 0.0 0.0 3.02 F
1604 3160 0.659957 GCGATGTTGAGCTGAATCCC 59.340 55.0 0.00 0.0 0.0 3.85 F
1952 4001 1.204146 GCCTACACCATCCTCCTCAA 58.796 55.0 0.00 0.0 0.0 3.02 F
3596 5661 0.032130 GTGCGGCAATATCGAGGAGA 59.968 55.0 3.23 0.0 0.0 3.71 F
4340 9022 0.896226 AGTCCCTTCTACCTTGCGTC 59.104 55.0 0.00 0.0 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2076 4125 2.108514 CATCATGTCGCCGTGCCTT 61.109 57.895 0.00 0.00 0.00 4.35 R
2524 4581 1.673400 CATCTCCGAGAAGAGCGAGAA 59.327 52.381 1.27 0.00 33.66 2.87 R
3524 5589 1.500736 AGGCCCTCCTATTGGAAATGG 59.499 52.381 0.00 0.02 42.06 3.16 R
3930 5998 0.243636 CACCCACGCCCTGAAAATTC 59.756 55.000 0.00 0.00 0.00 2.17 R
4467 9553 2.689983 CCTTTCCAGGCATGATACCAAC 59.310 50.000 0.00 0.00 31.53 3.77 R
5957 11048 1.740025 GTAAACCATCTGCTGCTCACC 59.260 52.381 0.00 0.00 0.00 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 8.094798 TGTAAATACTGTCAAAATCAGTGGTC 57.905 34.615 8.54 0.00 44.41 4.02
63 64 2.887568 CGTCCTCGCATGCTGTCC 60.888 66.667 17.13 0.00 0.00 4.02
64 65 2.512515 GTCCTCGCATGCTGTCCC 60.513 66.667 17.13 0.00 0.00 4.46
65 66 3.002583 TCCTCGCATGCTGTCCCA 61.003 61.111 17.13 0.00 0.00 4.37
66 67 2.821366 CCTCGCATGCTGTCCCAC 60.821 66.667 17.13 0.00 0.00 4.61
67 68 3.190849 CTCGCATGCTGTCCCACG 61.191 66.667 17.13 0.00 0.00 4.94
68 69 3.939837 CTCGCATGCTGTCCCACGT 62.940 63.158 17.13 0.00 0.00 4.49
69 70 2.125713 CGCATGCTGTCCCACGTA 60.126 61.111 17.13 0.00 0.00 3.57
70 71 2.452813 CGCATGCTGTCCCACGTAC 61.453 63.158 17.13 0.00 0.00 3.67
71 72 1.375396 GCATGCTGTCCCACGTACA 60.375 57.895 11.37 0.00 0.00 2.90
72 73 1.635663 GCATGCTGTCCCACGTACAC 61.636 60.000 11.37 0.00 0.00 2.90
73 74 0.320334 CATGCTGTCCCACGTACACA 60.320 55.000 0.00 0.00 0.00 3.72
74 75 0.613260 ATGCTGTCCCACGTACACAT 59.387 50.000 0.00 0.00 0.00 3.21
75 76 0.037697 TGCTGTCCCACGTACACATC 60.038 55.000 0.00 0.00 0.00 3.06
76 77 0.037697 GCTGTCCCACGTACACATCA 60.038 55.000 0.00 0.00 0.00 3.07
77 78 1.405526 GCTGTCCCACGTACACATCAT 60.406 52.381 0.00 0.00 0.00 2.45
78 79 2.270923 CTGTCCCACGTACACATCATG 58.729 52.381 0.00 0.00 0.00 3.07
79 80 1.066502 TGTCCCACGTACACATCATGG 60.067 52.381 0.00 0.00 0.00 3.66
80 81 1.206132 GTCCCACGTACACATCATGGA 59.794 52.381 0.00 0.00 31.69 3.41
81 82 1.480545 TCCCACGTACACATCATGGAG 59.519 52.381 0.00 0.00 31.69 3.86
82 83 1.480545 CCCACGTACACATCATGGAGA 59.519 52.381 0.00 0.00 31.69 3.71
83 84 2.093711 CCCACGTACACATCATGGAGAA 60.094 50.000 0.00 0.00 31.69 2.87
84 85 3.432186 CCCACGTACACATCATGGAGAAT 60.432 47.826 0.00 0.00 31.69 2.40
85 86 3.557185 CCACGTACACATCATGGAGAATG 59.443 47.826 0.00 0.00 37.66 2.67
86 87 3.557185 CACGTACACATCATGGAGAATGG 59.443 47.826 0.00 0.00 36.86 3.16
87 88 2.545526 CGTACACATCATGGAGAATGGC 59.454 50.000 0.00 0.00 36.86 4.40
88 89 1.671979 ACACATCATGGAGAATGGCG 58.328 50.000 0.00 0.00 36.86 5.69
89 90 1.065199 ACACATCATGGAGAATGGCGT 60.065 47.619 0.00 0.00 36.86 5.68
90 91 2.019249 CACATCATGGAGAATGGCGTT 58.981 47.619 0.00 0.00 36.86 4.84
91 92 2.424601 CACATCATGGAGAATGGCGTTT 59.575 45.455 0.00 0.00 36.86 3.60
92 93 3.091545 ACATCATGGAGAATGGCGTTTT 58.908 40.909 0.00 0.00 36.86 2.43
93 94 3.119388 ACATCATGGAGAATGGCGTTTTG 60.119 43.478 0.00 0.00 36.86 2.44
94 95 1.818060 TCATGGAGAATGGCGTTTTGG 59.182 47.619 0.00 0.00 36.86 3.28
95 96 0.532115 ATGGAGAATGGCGTTTTGGC 59.468 50.000 0.00 0.00 45.12 4.52
96 97 0.539438 TGGAGAATGGCGTTTTGGCT 60.539 50.000 0.00 0.00 45.14 4.75
97 98 0.171231 GGAGAATGGCGTTTTGGCTC 59.829 55.000 0.00 0.00 45.14 4.70
98 99 0.171231 GAGAATGGCGTTTTGGCTCC 59.829 55.000 0.00 0.00 45.14 4.70
99 100 1.215382 GAATGGCGTTTTGGCTCCC 59.785 57.895 0.00 0.00 45.14 4.30
100 101 1.531739 GAATGGCGTTTTGGCTCCCA 61.532 55.000 0.00 0.00 45.14 4.37
101 102 1.118356 AATGGCGTTTTGGCTCCCAA 61.118 50.000 0.00 0.00 42.29 4.12
102 103 1.535204 ATGGCGTTTTGGCTCCCAAG 61.535 55.000 0.00 0.00 44.84 3.61
103 104 1.901464 GGCGTTTTGGCTCCCAAGA 60.901 57.895 0.00 0.00 44.84 3.02
104 105 1.581447 GCGTTTTGGCTCCCAAGAG 59.419 57.895 0.00 0.00 44.84 2.85
123 124 3.580193 GCGCGCTCCTGCATGAAT 61.580 61.111 26.67 0.00 39.64 2.57
124 125 2.246739 GCGCGCTCCTGCATGAATA 61.247 57.895 26.67 0.00 39.64 1.75
125 126 1.858041 CGCGCTCCTGCATGAATAG 59.142 57.895 5.56 0.00 39.64 1.73
126 127 0.877649 CGCGCTCCTGCATGAATAGT 60.878 55.000 5.56 0.00 39.64 2.12
127 128 1.602920 CGCGCTCCTGCATGAATAGTA 60.603 52.381 5.56 0.00 39.64 1.82
128 129 2.483876 GCGCTCCTGCATGAATAGTAA 58.516 47.619 0.00 0.00 39.64 2.24
129 130 2.872245 GCGCTCCTGCATGAATAGTAAA 59.128 45.455 0.00 0.00 39.64 2.01
130 131 3.303395 GCGCTCCTGCATGAATAGTAAAC 60.303 47.826 0.00 0.00 39.64 2.01
131 132 3.871006 CGCTCCTGCATGAATAGTAAACA 59.129 43.478 0.00 0.00 39.64 2.83
132 133 4.332543 CGCTCCTGCATGAATAGTAAACAA 59.667 41.667 0.00 0.00 39.64 2.83
133 134 5.008019 CGCTCCTGCATGAATAGTAAACAAT 59.992 40.000 0.00 0.00 39.64 2.71
134 135 6.202762 CGCTCCTGCATGAATAGTAAACAATA 59.797 38.462 0.00 0.00 39.64 1.90
135 136 7.570140 CGCTCCTGCATGAATAGTAAACAATAG 60.570 40.741 0.00 0.00 39.64 1.73
136 137 7.227512 GCTCCTGCATGAATAGTAAACAATAGT 59.772 37.037 0.00 0.00 39.41 2.12
137 138 9.764363 CTCCTGCATGAATAGTAAACAATAGTA 57.236 33.333 0.00 0.00 0.00 1.82
355 715 7.765819 GCCAAGATGTTTAATCTTTTTGCCTAT 59.234 33.333 0.00 0.00 36.32 2.57
399 760 6.612247 TGTGACAAAGTACACATCGATTTT 57.388 33.333 0.00 0.00 41.19 1.82
400 761 7.022055 TGTGACAAAGTACACATCGATTTTT 57.978 32.000 0.00 0.00 41.19 1.94
447 808 6.316319 CAAAAATATTTTTGCATGCTGTCCC 58.684 36.000 30.59 0.00 46.94 4.46
448 809 4.822685 AATATTTTTGCATGCTGTCCCA 57.177 36.364 20.33 0.47 0.00 4.37
449 810 2.460757 ATTTTTGCATGCTGTCCCAC 57.539 45.000 20.33 0.00 0.00 4.61
450 811 0.031857 TTTTTGCATGCTGTCCCACG 59.968 50.000 20.33 0.00 0.00 4.94
451 812 1.106351 TTTTGCATGCTGTCCCACGT 61.106 50.000 20.33 0.00 0.00 4.49
452 813 0.250510 TTTGCATGCTGTCCCACGTA 60.251 50.000 20.33 0.00 0.00 3.57
453 814 0.953471 TTGCATGCTGTCCCACGTAC 60.953 55.000 20.33 0.00 0.00 3.67
454 815 1.375396 GCATGCTGTCCCACGTACA 60.375 57.895 11.37 0.00 0.00 2.90
455 816 1.635663 GCATGCTGTCCCACGTACAC 61.636 60.000 11.37 0.00 0.00 2.90
456 817 0.320334 CATGCTGTCCCACGTACACA 60.320 55.000 0.00 0.00 0.00 3.72
457 818 0.394938 ATGCTGTCCCACGTACACAA 59.605 50.000 0.00 0.00 0.00 3.33
458 819 0.178301 TGCTGTCCCACGTACACAAA 59.822 50.000 0.00 0.00 0.00 2.83
459 820 1.301423 GCTGTCCCACGTACACAAAA 58.699 50.000 0.00 0.00 0.00 2.44
460 821 1.877443 GCTGTCCCACGTACACAAAAT 59.123 47.619 0.00 0.00 0.00 1.82
461 822 2.350388 GCTGTCCCACGTACACAAAATG 60.350 50.000 0.00 0.00 0.00 2.32
462 823 2.222886 TGTCCCACGTACACAAAATGG 58.777 47.619 0.00 0.00 0.00 3.16
463 824 2.158798 TGTCCCACGTACACAAAATGGA 60.159 45.455 0.00 0.00 31.69 3.41
464 825 2.482721 GTCCCACGTACACAAAATGGAG 59.517 50.000 0.00 0.00 31.69 3.86
465 826 2.369203 TCCCACGTACACAAAATGGAGA 59.631 45.455 0.00 0.00 31.69 3.71
466 827 3.142951 CCCACGTACACAAAATGGAGAA 58.857 45.455 0.00 0.00 31.69 2.87
467 828 3.756434 CCCACGTACACAAAATGGAGAAT 59.244 43.478 0.00 0.00 31.69 2.40
468 829 4.379394 CCCACGTACACAAAATGGAGAATG 60.379 45.833 0.00 0.00 31.69 2.67
469 830 4.215399 CCACGTACACAAAATGGAGAATGT 59.785 41.667 0.00 0.00 31.69 2.71
470 831 5.382303 CACGTACACAAAATGGAGAATGTC 58.618 41.667 0.00 0.00 0.00 3.06
471 832 4.151689 ACGTACACAAAATGGAGAATGTCG 59.848 41.667 0.00 0.00 0.00 4.35
472 833 4.151689 CGTACACAAAATGGAGAATGTCGT 59.848 41.667 0.00 0.00 0.00 4.34
473 834 5.333798 CGTACACAAAATGGAGAATGTCGTT 60.334 40.000 0.00 0.00 0.00 3.85
474 835 5.514274 ACACAAAATGGAGAATGTCGTTT 57.486 34.783 0.00 0.00 0.00 3.60
475 836 5.901552 ACACAAAATGGAGAATGTCGTTTT 58.098 33.333 0.00 0.00 0.00 2.43
476 837 5.748152 ACACAAAATGGAGAATGTCGTTTTG 59.252 36.000 15.05 15.05 41.99 2.44
477 838 5.175491 CACAAAATGGAGAATGTCGTTTTGG 59.825 40.000 18.65 8.88 41.32 3.28
478 839 3.575965 AATGGAGAATGTCGTTTTGGC 57.424 42.857 0.00 0.00 0.00 4.52
479 840 2.270352 TGGAGAATGTCGTTTTGGCT 57.730 45.000 0.00 0.00 0.00 4.75
480 841 2.151202 TGGAGAATGTCGTTTTGGCTC 58.849 47.619 0.00 0.00 0.00 4.70
481 842 1.468914 GGAGAATGTCGTTTTGGCTCC 59.531 52.381 0.00 0.00 34.35 4.70
482 843 1.468914 GAGAATGTCGTTTTGGCTCCC 59.531 52.381 0.00 0.00 0.00 4.30
483 844 1.202879 AGAATGTCGTTTTGGCTCCCA 60.203 47.619 0.00 0.00 0.00 4.37
484 845 1.200020 GAATGTCGTTTTGGCTCCCAG 59.800 52.381 0.00 0.00 33.81 4.45
485 846 0.609131 ATGTCGTTTTGGCTCCCAGG 60.609 55.000 0.00 0.00 33.81 4.45
486 847 1.072505 GTCGTTTTGGCTCCCAGGA 59.927 57.895 0.00 0.00 33.81 3.86
487 848 0.955919 GTCGTTTTGGCTCCCAGGAG 60.956 60.000 9.48 9.48 44.56 3.69
503 864 2.406559 AGGAGCTCCTGCATGAATAGT 58.593 47.619 34.74 5.61 46.55 2.12
504 865 3.581101 AGGAGCTCCTGCATGAATAGTA 58.419 45.455 34.74 0.00 46.55 1.82
505 866 3.969976 AGGAGCTCCTGCATGAATAGTAA 59.030 43.478 34.74 0.00 46.55 2.24
506 867 4.410228 AGGAGCTCCTGCATGAATAGTAAA 59.590 41.667 34.74 0.00 46.55 2.01
507 868 4.513318 GGAGCTCCTGCATGAATAGTAAAC 59.487 45.833 26.25 0.00 42.74 2.01
508 869 5.102953 AGCTCCTGCATGAATAGTAAACA 57.897 39.130 0.00 0.00 42.74 2.83
509 870 5.500234 AGCTCCTGCATGAATAGTAAACAA 58.500 37.500 0.00 0.00 42.74 2.83
510 871 5.945784 AGCTCCTGCATGAATAGTAAACAAA 59.054 36.000 0.00 0.00 42.74 2.83
511 872 6.434028 AGCTCCTGCATGAATAGTAAACAAAA 59.566 34.615 0.00 0.00 42.74 2.44
512 873 7.039784 AGCTCCTGCATGAATAGTAAACAAAAA 60.040 33.333 0.00 0.00 42.74 1.94
568 929 6.500775 TTTTTAGAGTTCGTGTTAGTGTCG 57.499 37.500 0.00 0.00 0.00 4.35
569 930 2.047679 AGAGTTCGTGTTAGTGTCGC 57.952 50.000 0.00 0.00 0.00 5.19
570 931 1.335810 AGAGTTCGTGTTAGTGTCGCA 59.664 47.619 0.00 0.00 0.00 5.10
571 932 2.030185 AGAGTTCGTGTTAGTGTCGCAT 60.030 45.455 0.00 0.00 0.00 4.73
572 933 2.058798 AGTTCGTGTTAGTGTCGCATG 58.941 47.619 0.00 0.00 0.00 4.06
573 934 0.787787 TTCGTGTTAGTGTCGCATGC 59.212 50.000 7.91 7.91 0.00 4.06
574 935 0.319125 TCGTGTTAGTGTCGCATGCA 60.319 50.000 19.57 1.73 0.00 3.96
575 936 0.721154 CGTGTTAGTGTCGCATGCAT 59.279 50.000 19.57 0.00 0.00 3.96
576 937 1.267038 CGTGTTAGTGTCGCATGCATC 60.267 52.381 19.57 10.25 0.00 3.91
577 938 1.062587 GTGTTAGTGTCGCATGCATCC 59.937 52.381 19.57 4.85 0.00 3.51
578 939 1.066215 TGTTAGTGTCGCATGCATCCT 60.066 47.619 19.57 9.72 0.00 3.24
579 940 1.594862 GTTAGTGTCGCATGCATCCTC 59.405 52.381 19.57 5.42 0.00 3.71
580 941 0.823460 TAGTGTCGCATGCATCCTCA 59.177 50.000 19.57 5.88 0.00 3.86
581 942 0.036105 AGTGTCGCATGCATCCTCAA 60.036 50.000 19.57 0.00 0.00 3.02
582 943 0.804364 GTGTCGCATGCATCCTCAAA 59.196 50.000 19.57 0.00 0.00 2.69
583 944 1.199789 GTGTCGCATGCATCCTCAAAA 59.800 47.619 19.57 0.00 0.00 2.44
584 945 1.885233 TGTCGCATGCATCCTCAAAAA 59.115 42.857 19.57 0.00 0.00 1.94
610 971 3.932545 TGTGAAACAGCAACTGTGTTT 57.067 38.095 0.15 1.04 45.67 2.83
617 978 5.835113 AACAGCAACTGTGTTTCATTAGT 57.165 34.783 0.15 0.00 44.62 2.24
618 979 5.173774 ACAGCAACTGTGTTTCATTAGTG 57.826 39.130 0.00 0.00 43.63 2.74
619 980 4.881273 ACAGCAACTGTGTTTCATTAGTGA 59.119 37.500 0.00 0.00 43.63 3.41
620 981 5.356751 ACAGCAACTGTGTTTCATTAGTGAA 59.643 36.000 0.00 0.00 43.63 3.18
621 982 6.127758 ACAGCAACTGTGTTTCATTAGTGAAA 60.128 34.615 9.15 9.15 45.30 2.69
622 983 7.576666 ACAGCAACTGTGTTTCATTAGTGAAAA 60.577 33.333 14.24 3.86 44.96 2.29
645 1006 8.661352 AAAAACAAATCTAGGGTGACATTTTG 57.339 30.769 0.00 0.00 0.00 2.44
646 1007 7.595819 AAACAAATCTAGGGTGACATTTTGA 57.404 32.000 0.00 0.00 0.00 2.69
647 1008 7.595819 AACAAATCTAGGGTGACATTTTGAA 57.404 32.000 0.00 0.00 0.00 2.69
648 1009 7.219484 ACAAATCTAGGGTGACATTTTGAAG 57.781 36.000 0.00 0.00 0.00 3.02
649 1010 6.777580 ACAAATCTAGGGTGACATTTTGAAGT 59.222 34.615 0.00 0.00 0.00 3.01
650 1011 7.942341 ACAAATCTAGGGTGACATTTTGAAGTA 59.058 33.333 0.00 0.00 0.00 2.24
651 1012 8.792633 CAAATCTAGGGTGACATTTTGAAGTAA 58.207 33.333 0.00 0.00 0.00 2.24
652 1013 7.923414 ATCTAGGGTGACATTTTGAAGTAAC 57.077 36.000 0.00 0.00 0.00 2.50
653 1014 6.833041 TCTAGGGTGACATTTTGAAGTAACA 58.167 36.000 0.00 0.00 0.00 2.41
654 1015 7.458397 TCTAGGGTGACATTTTGAAGTAACAT 58.542 34.615 0.00 0.00 0.00 2.71
655 1016 6.976934 AGGGTGACATTTTGAAGTAACATT 57.023 33.333 0.00 0.00 0.00 2.71
656 1017 7.360113 AGGGTGACATTTTGAAGTAACATTT 57.640 32.000 0.00 0.00 0.00 2.32
657 1018 7.209475 AGGGTGACATTTTGAAGTAACATTTG 58.791 34.615 0.00 0.00 0.00 2.32
658 1019 6.983890 GGGTGACATTTTGAAGTAACATTTGT 59.016 34.615 0.00 0.00 0.00 2.83
659 1020 7.494298 GGGTGACATTTTGAAGTAACATTTGTT 59.506 33.333 1.08 1.08 41.73 2.83
660 1021 8.327429 GGTGACATTTTGAAGTAACATTTGTTG 58.673 33.333 6.21 0.00 38.90 3.33
661 1022 8.868916 GTGACATTTTGAAGTAACATTTGTTGT 58.131 29.630 6.21 0.00 41.53 3.32
691 1052 7.872113 TTTTTCACAGGCCAAAATGTTTAAT 57.128 28.000 5.01 0.00 0.00 1.40
692 1053 7.489574 TTTTCACAGGCCAAAATGTTTAATC 57.510 32.000 5.01 0.00 0.00 1.75
693 1054 6.418057 TTCACAGGCCAAAATGTTTAATCT 57.582 33.333 5.01 0.00 0.00 2.40
694 1055 6.418057 TCACAGGCCAAAATGTTTAATCTT 57.582 33.333 5.01 0.00 0.00 2.40
695 1056 6.825610 TCACAGGCCAAAATGTTTAATCTTT 58.174 32.000 5.01 0.00 0.00 2.52
696 1057 7.278875 TCACAGGCCAAAATGTTTAATCTTTT 58.721 30.769 5.01 0.00 0.00 2.27
697 1058 7.440856 TCACAGGCCAAAATGTTTAATCTTTTC 59.559 33.333 5.01 0.00 0.00 2.29
698 1059 6.423604 ACAGGCCAAAATGTTTAATCTTTTCG 59.576 34.615 5.01 0.00 0.00 3.46
699 1060 6.423604 CAGGCCAAAATGTTTAATCTTTTCGT 59.576 34.615 5.01 0.00 0.00 3.85
700 1061 6.645003 AGGCCAAAATGTTTAATCTTTTCGTC 59.355 34.615 5.01 0.00 0.00 4.20
701 1062 6.645003 GGCCAAAATGTTTAATCTTTTCGTCT 59.355 34.615 0.00 0.00 0.00 4.18
702 1063 7.810759 GGCCAAAATGTTTAATCTTTTCGTCTA 59.189 33.333 0.00 0.00 0.00 2.59
703 1064 8.635983 GCCAAAATGTTTAATCTTTTCGTCTAC 58.364 33.333 0.00 0.00 0.00 2.59
704 1065 9.672086 CCAAAATGTTTAATCTTTTCGTCTACA 57.328 29.630 0.00 0.00 0.00 2.74
710 1071 9.672086 TGTTTAATCTTTTCGTCTACAATTTGG 57.328 29.630 0.78 0.00 0.00 3.28
711 1072 9.673454 GTTTAATCTTTTCGTCTACAATTTGGT 57.327 29.630 0.78 0.00 0.00 3.67
713 1074 9.672086 TTAATCTTTTCGTCTACAATTTGGTTG 57.328 29.630 0.78 0.00 43.64 3.77
723 1084 3.023946 CAATTTGGTTGTCGCATTGGA 57.976 42.857 0.00 0.00 33.01 3.53
724 1085 3.587923 CAATTTGGTTGTCGCATTGGAT 58.412 40.909 0.00 0.00 33.01 3.41
725 1086 2.721274 TTTGGTTGTCGCATTGGATG 57.279 45.000 0.00 0.00 0.00 3.51
726 1087 1.614996 TTGGTTGTCGCATTGGATGT 58.385 45.000 0.00 0.00 0.00 3.06
727 1088 0.880441 TGGTTGTCGCATTGGATGTG 59.120 50.000 0.00 0.00 41.98 3.21
728 1089 1.164411 GGTTGTCGCATTGGATGTGA 58.836 50.000 0.35 0.35 46.59 3.58
736 1097 4.980590 TCGCATTGGATGTGACAAAATAC 58.019 39.130 0.00 0.00 44.18 1.89
737 1098 4.457257 TCGCATTGGATGTGACAAAATACA 59.543 37.500 0.00 0.00 44.18 2.29
738 1099 4.558470 CGCATTGGATGTGACAAAATACAC 59.442 41.667 0.00 0.00 43.24 2.90
795 1156 1.705256 AAAATTGCATGCAGAGCACG 58.295 45.000 21.50 0.00 43.04 5.34
799 1160 4.093952 GCATGCAGAGCACGCGTT 62.094 61.111 10.22 0.00 38.13 4.84
800 1161 2.557805 CATGCAGAGCACGCGTTT 59.442 55.556 10.22 0.00 43.04 3.60
801 1162 1.510623 CATGCAGAGCACGCGTTTC 60.511 57.895 10.22 11.06 43.04 2.78
802 1163 1.669115 ATGCAGAGCACGCGTTTCT 60.669 52.632 10.22 13.51 43.04 2.52
803 1164 1.904852 ATGCAGAGCACGCGTTTCTG 61.905 55.000 31.42 31.42 43.04 3.02
804 1165 2.856032 CAGAGCACGCGTTTCTGG 59.144 61.111 29.54 14.21 35.75 3.86
805 1166 2.357517 AGAGCACGCGTTTCTGGG 60.358 61.111 19.11 5.04 0.00 4.45
806 1167 2.357034 GAGCACGCGTTTCTGGGA 60.357 61.111 10.22 0.00 0.00 4.37
807 1168 2.357517 AGCACGCGTTTCTGGGAG 60.358 61.111 10.22 0.00 0.00 4.30
808 1169 4.090057 GCACGCGTTTCTGGGAGC 62.090 66.667 10.22 2.95 0.00 4.70
809 1170 2.664851 CACGCGTTTCTGGGAGCA 60.665 61.111 10.22 0.00 0.00 4.26
933 1318 5.681639 ACCCGATTTACCCAGAGATAAAAG 58.318 41.667 0.00 0.00 0.00 2.27
963 1349 8.943594 AGGAGAAATCTAACCTTATCTCGTAT 57.056 34.615 0.00 0.00 35.33 3.06
970 1356 7.918536 TCTAACCTTATCTCGTATAATCGCT 57.081 36.000 0.00 0.00 0.00 4.93
971 1357 8.332996 TCTAACCTTATCTCGTATAATCGCTT 57.667 34.615 0.00 0.00 0.00 4.68
972 1358 8.449397 TCTAACCTTATCTCGTATAATCGCTTC 58.551 37.037 0.00 0.00 0.00 3.86
973 1359 6.821031 ACCTTATCTCGTATAATCGCTTCT 57.179 37.500 0.00 0.00 0.00 2.85
1604 3160 0.659957 GCGATGTTGAGCTGAATCCC 59.340 55.000 0.00 0.00 0.00 3.85
1674 3230 8.339344 TGAACAATTCTGATTCATGTGTGTAT 57.661 30.769 0.00 0.00 0.00 2.29
1675 3231 9.447157 TGAACAATTCTGATTCATGTGTGTATA 57.553 29.630 0.00 0.00 0.00 1.47
1718 3274 6.041865 TGGATCATTGTTGTTCATCTTGGTTT 59.958 34.615 0.00 0.00 0.00 3.27
1785 3344 7.221838 GGTCATTTTTCGTTCAAAATTCACTCA 59.778 33.333 0.00 0.00 34.70 3.41
1846 3405 5.629606 CGAAAAGCTCGTTAATTTCGTTC 57.370 39.130 16.71 0.00 45.32 3.95
1952 4001 1.204146 GCCTACACCATCCTCCTCAA 58.796 55.000 0.00 0.00 0.00 3.02
2491 4548 2.280404 CTGTGCATCCCTCCTGGCAT 62.280 60.000 0.00 0.00 38.68 4.40
2524 4581 2.480100 GAGGACTACTCGAAGGCGT 58.520 57.895 0.00 0.00 36.29 5.68
2720 4777 1.736126 AGTTCACATGAATGCTCGCAG 59.264 47.619 0.00 0.00 36.33 5.18
2827 4891 1.519455 CATGTCGCGAGGGAAGACC 60.519 63.158 10.24 0.00 40.67 3.85
2928 4992 3.660970 TTATATGTCAAGCTGGGCCAA 57.339 42.857 8.04 0.00 0.00 4.52
3027 5091 3.825143 ATGGAAGTTTGCTGCAAAAGT 57.175 38.095 27.49 18.45 35.03 2.66
3144 5208 6.993308 TGTATGCTAAAAACAGAACCAGTGTA 59.007 34.615 0.00 0.00 0.00 2.90
3177 5241 2.159366 AGATAGTTCGTCGAAGGCACTG 60.159 50.000 8.18 0.00 40.86 3.66
3193 5257 3.195591 CTGGCCTATCGGACCGACG 62.196 68.421 21.02 13.26 39.18 5.12
3363 5427 8.028354 TGTCATCCACTGCTGTTTATTTATTTG 58.972 33.333 0.00 0.00 0.00 2.32
3391 5455 2.187946 GGGAGGACATGTGAGGCG 59.812 66.667 1.15 0.00 0.00 5.52
3596 5661 0.032130 GTGCGGCAATATCGAGGAGA 59.968 55.000 3.23 0.00 0.00 3.71
3684 5749 1.217882 GTCACTCACCTGACCAAACG 58.782 55.000 0.00 0.00 35.44 3.60
3773 5839 4.563524 GTGTATACTCACACTGCGAAAC 57.436 45.455 4.17 0.00 44.41 2.78
3826 5892 2.042686 TCATACATGGCTGCTTCCAC 57.957 50.000 0.00 0.00 39.25 4.02
3853 5919 3.077359 AGTTGAGCTTGATACTGTTGCC 58.923 45.455 0.00 0.00 0.00 4.52
3930 5998 1.747355 CTTCATAAGGTGGGCAAGCAG 59.253 52.381 0.00 0.00 0.00 4.24
3943 6011 1.986698 CAAGCAGAATTTTCAGGGCG 58.013 50.000 0.00 0.00 0.00 6.13
4168 8850 4.636206 GTGTTGAGACTTGAGACCACTTTT 59.364 41.667 0.00 0.00 0.00 2.27
4340 9022 0.896226 AGTCCCTTCTACCTTGCGTC 59.104 55.000 0.00 0.00 0.00 5.19
4343 9025 2.494870 GTCCCTTCTACCTTGCGTCTAA 59.505 50.000 0.00 0.00 0.00 2.10
4728 9815 7.595875 CAGATCATACTCAGAAAGTAGATGCTG 59.404 40.741 0.00 0.00 43.64 4.41
5005 10092 1.654317 CTGACAGCTTCATCCTGAGC 58.346 55.000 0.00 0.00 32.17 4.26
5162 10249 3.138839 ACCATATCATGTGCCCATCAAGA 59.861 43.478 0.00 0.00 0.00 3.02
5163 10250 4.202641 ACCATATCATGTGCCCATCAAGAT 60.203 41.667 0.00 0.00 0.00 2.40
5164 10251 5.014438 ACCATATCATGTGCCCATCAAGATA 59.986 40.000 0.00 0.00 32.66 1.98
5165 10252 5.589050 CCATATCATGTGCCCATCAAGATAG 59.411 44.000 0.00 0.00 32.00 2.08
5166 10253 2.854963 TCATGTGCCCATCAAGATAGC 58.145 47.619 0.00 0.00 0.00 2.97
5167 10254 2.173143 TCATGTGCCCATCAAGATAGCA 59.827 45.455 0.00 3.59 0.00 3.49
5168 10255 2.804986 TGTGCCCATCAAGATAGCAA 57.195 45.000 8.09 0.00 33.06 3.91
5169 10256 2.368439 TGTGCCCATCAAGATAGCAAC 58.632 47.619 8.09 5.01 33.06 4.17
5170 10257 1.678101 GTGCCCATCAAGATAGCAACC 59.322 52.381 8.09 0.00 33.06 3.77
5171 10258 1.284491 TGCCCATCAAGATAGCAACCA 59.716 47.619 4.91 0.00 0.00 3.67
5172 10259 2.091720 TGCCCATCAAGATAGCAACCAT 60.092 45.455 4.91 0.00 0.00 3.55
5173 10260 2.555757 GCCCATCAAGATAGCAACCATC 59.444 50.000 0.00 0.00 0.00 3.51
5174 10261 3.824133 CCCATCAAGATAGCAACCATCA 58.176 45.455 0.00 0.00 0.00 3.07
5175 10262 3.567164 CCCATCAAGATAGCAACCATCAC 59.433 47.826 0.00 0.00 0.00 3.06
5176 10263 4.201657 CCATCAAGATAGCAACCATCACA 58.798 43.478 0.00 0.00 0.00 3.58
5177 10264 4.275196 CCATCAAGATAGCAACCATCACAG 59.725 45.833 0.00 0.00 0.00 3.66
5178 10265 3.877559 TCAAGATAGCAACCATCACAGG 58.122 45.455 0.00 0.00 0.00 4.00
5179 10266 3.264193 TCAAGATAGCAACCATCACAGGT 59.736 43.478 0.00 0.00 45.91 4.00
5180 10267 4.469586 TCAAGATAGCAACCATCACAGGTA 59.530 41.667 0.00 0.00 42.25 3.08
5181 10268 5.130975 TCAAGATAGCAACCATCACAGGTAT 59.869 40.000 0.00 0.00 42.25 2.73
5182 10269 5.220710 AGATAGCAACCATCACAGGTATC 57.779 43.478 0.00 0.00 42.25 2.24
5183 10270 4.904251 AGATAGCAACCATCACAGGTATCT 59.096 41.667 0.00 0.00 43.22 1.98
5184 10271 5.367937 AGATAGCAACCATCACAGGTATCTT 59.632 40.000 0.00 0.00 44.69 2.40
5185 10272 3.878778 AGCAACCATCACAGGTATCTTC 58.121 45.455 0.00 0.00 42.25 2.87
5186 10273 2.945668 GCAACCATCACAGGTATCTTCC 59.054 50.000 0.00 0.00 42.25 3.46
5187 10274 3.370953 GCAACCATCACAGGTATCTTCCT 60.371 47.826 0.00 0.00 42.25 3.36
5188 10275 4.848357 CAACCATCACAGGTATCTTCCTT 58.152 43.478 0.00 0.00 42.25 3.36
5189 10276 5.256474 CAACCATCACAGGTATCTTCCTTT 58.744 41.667 0.00 0.00 42.25 3.11
5190 10277 5.520748 ACCATCACAGGTATCTTCCTTTT 57.479 39.130 0.00 0.00 40.98 2.27
5191 10278 5.256474 ACCATCACAGGTATCTTCCTTTTG 58.744 41.667 0.00 0.00 40.98 2.44
5192 10279 4.096984 CCATCACAGGTATCTTCCTTTTGC 59.903 45.833 0.00 0.00 35.37 3.68
5193 10280 4.640771 TCACAGGTATCTTCCTTTTGCT 57.359 40.909 0.00 0.00 35.37 3.91
5194 10281 4.985538 TCACAGGTATCTTCCTTTTGCTT 58.014 39.130 0.00 0.00 35.37 3.91
5195 10282 5.385198 TCACAGGTATCTTCCTTTTGCTTT 58.615 37.500 0.00 0.00 35.37 3.51
5196 10283 5.833131 TCACAGGTATCTTCCTTTTGCTTTT 59.167 36.000 0.00 0.00 35.37 2.27
5197 10284 5.922544 CACAGGTATCTTCCTTTTGCTTTTG 59.077 40.000 0.00 0.00 35.37 2.44
5198 10285 4.925646 CAGGTATCTTCCTTTTGCTTTTGC 59.074 41.667 0.00 0.00 39.99 3.68
5199 10286 4.588528 AGGTATCTTCCTTTTGCTTTTGCA 59.411 37.500 0.00 0.00 44.11 4.08
5200 10287 5.246883 AGGTATCTTCCTTTTGCTTTTGCAT 59.753 36.000 0.00 0.00 44.73 3.96
5201 10288 6.795287 AGGTATCTTCCTTTTGCTTTTGCATG 60.795 38.462 0.00 0.00 44.73 4.06
5202 10289 9.097854 AGGTATCTTCCTTTTGCTTTTGCATGT 62.098 37.037 0.00 0.00 44.73 3.21
5211 10298 3.591196 GCTTTTGCATGTATGTTCCCA 57.409 42.857 0.00 0.00 46.58 4.37
5212 10299 4.127566 GCTTTTGCATGTATGTTCCCAT 57.872 40.909 0.00 0.00 46.58 4.00
5213 10300 4.114794 GCTTTTGCATGTATGTTCCCATC 58.885 43.478 0.00 0.00 46.58 3.51
5214 10301 4.381825 GCTTTTGCATGTATGTTCCCATCA 60.382 41.667 0.00 0.00 46.58 3.07
5215 10302 5.722263 CTTTTGCATGTATGTTCCCATCAA 58.278 37.500 0.00 0.00 32.29 2.57
5216 10303 4.987408 TTGCATGTATGTTCCCATCAAG 57.013 40.909 0.00 0.00 32.29 3.02
5217 10304 4.233632 TGCATGTATGTTCCCATCAAGA 57.766 40.909 0.00 0.00 32.29 3.02
5309 10396 1.043816 ACTACATCCAGATGAGCCCG 58.956 55.000 14.42 1.03 41.20 6.13
5957 11048 0.318107 CTGTCCTGGCAAAAACGCAG 60.318 55.000 0.00 0.00 0.00 5.18
5968 11059 1.789078 AAAACGCAGGTGAGCAGCAG 61.789 55.000 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 9.466497 ACTGATTTTGACAGTATTTACATCCAT 57.534 29.630 0.00 0.00 45.10 3.41
10 11 8.729756 CACTGATTTTGACAGTATTTACATCCA 58.270 33.333 0.00 0.00 45.15 3.41
11 12 8.184192 CCACTGATTTTGACAGTATTTACATCC 58.816 37.037 0.00 0.00 45.15 3.51
12 13 8.730680 ACCACTGATTTTGACAGTATTTACATC 58.269 33.333 0.00 0.00 45.15 3.06
17 18 5.181245 CCGACCACTGATTTTGACAGTATTT 59.819 40.000 0.00 0.00 45.15 1.40
53 54 1.375396 TGTACGTGGGACAGCATGC 60.375 57.895 10.51 10.51 41.80 4.06
55 56 0.613260 ATGTGTACGTGGGACAGCAT 59.387 50.000 0.00 0.00 41.80 3.79
56 57 0.037697 GATGTGTACGTGGGACAGCA 60.038 55.000 0.00 0.00 41.80 4.41
57 58 0.037697 TGATGTGTACGTGGGACAGC 60.038 55.000 0.00 1.26 41.80 4.40
58 59 2.270923 CATGATGTGTACGTGGGACAG 58.729 52.381 0.00 0.00 41.80 3.51
59 60 1.066502 CCATGATGTGTACGTGGGACA 60.067 52.381 0.00 0.00 39.81 4.02
60 61 1.206132 TCCATGATGTGTACGTGGGAC 59.794 52.381 0.00 0.00 42.63 4.46
61 62 1.480545 CTCCATGATGTGTACGTGGGA 59.519 52.381 0.00 0.00 42.63 4.37
62 63 1.480545 TCTCCATGATGTGTACGTGGG 59.519 52.381 0.00 0.00 42.63 4.61
63 64 2.959507 TCTCCATGATGTGTACGTGG 57.040 50.000 0.00 0.00 43.43 4.94
64 65 3.557185 CCATTCTCCATGATGTGTACGTG 59.443 47.826 0.00 0.00 34.31 4.49
65 66 3.797039 CCATTCTCCATGATGTGTACGT 58.203 45.455 0.00 0.00 34.31 3.57
66 67 2.545526 GCCATTCTCCATGATGTGTACG 59.454 50.000 0.00 0.00 34.31 3.67
67 68 2.545526 CGCCATTCTCCATGATGTGTAC 59.454 50.000 0.00 0.00 34.31 2.90
68 69 2.170397 ACGCCATTCTCCATGATGTGTA 59.830 45.455 0.00 0.00 34.31 2.90
69 70 1.065199 ACGCCATTCTCCATGATGTGT 60.065 47.619 0.00 0.00 34.31 3.72
70 71 1.671979 ACGCCATTCTCCATGATGTG 58.328 50.000 0.00 0.00 34.31 3.21
71 72 2.425143 AACGCCATTCTCCATGATGT 57.575 45.000 0.00 0.00 34.31 3.06
72 73 3.441163 CAAAACGCCATTCTCCATGATG 58.559 45.455 0.00 0.00 34.31 3.07
73 74 2.428171 CCAAAACGCCATTCTCCATGAT 59.572 45.455 0.00 0.00 34.31 2.45
74 75 1.818060 CCAAAACGCCATTCTCCATGA 59.182 47.619 0.00 0.00 34.31 3.07
75 76 1.736696 GCCAAAACGCCATTCTCCATG 60.737 52.381 0.00 0.00 0.00 3.66
76 77 0.532115 GCCAAAACGCCATTCTCCAT 59.468 50.000 0.00 0.00 0.00 3.41
77 78 0.539438 AGCCAAAACGCCATTCTCCA 60.539 50.000 0.00 0.00 0.00 3.86
78 79 0.171231 GAGCCAAAACGCCATTCTCC 59.829 55.000 0.00 0.00 0.00 3.71
79 80 0.171231 GGAGCCAAAACGCCATTCTC 59.829 55.000 0.00 0.00 0.00 2.87
80 81 1.250840 GGGAGCCAAAACGCCATTCT 61.251 55.000 0.00 0.00 0.00 2.40
81 82 1.215382 GGGAGCCAAAACGCCATTC 59.785 57.895 0.00 0.00 0.00 2.67
82 83 1.118356 TTGGGAGCCAAAACGCCATT 61.118 50.000 0.00 0.00 40.92 3.16
83 84 1.532794 TTGGGAGCCAAAACGCCAT 60.533 52.632 0.00 0.00 40.92 4.40
84 85 2.123683 TTGGGAGCCAAAACGCCA 60.124 55.556 0.00 0.00 40.92 5.69
85 86 1.866853 CTCTTGGGAGCCAAAACGCC 61.867 60.000 0.00 0.00 43.44 5.68
86 87 1.581447 CTCTTGGGAGCCAAAACGC 59.419 57.895 0.00 0.00 43.44 4.84
106 107 2.167808 CTATTCATGCAGGAGCGCGC 62.168 60.000 26.66 26.66 46.23 6.86
107 108 0.877649 ACTATTCATGCAGGAGCGCG 60.878 55.000 0.00 0.00 46.23 6.86
108 109 2.154854 TACTATTCATGCAGGAGCGC 57.845 50.000 0.00 0.00 46.23 5.92
109 110 3.871006 TGTTTACTATTCATGCAGGAGCG 59.129 43.478 0.00 0.00 46.23 5.03
110 111 5.818136 TTGTTTACTATTCATGCAGGAGC 57.182 39.130 0.00 0.00 42.57 4.70
111 112 8.668510 ACTATTGTTTACTATTCATGCAGGAG 57.331 34.615 0.00 0.00 0.00 3.69
285 645 7.551585 ACAAATGTTACTTCAAAATGTCACCA 58.448 30.769 0.00 0.00 0.00 4.17
355 715 6.832900 TCACATCCAATGCTACATCCAAATTA 59.167 34.615 0.00 0.00 0.00 1.40
424 785 6.002704 TGGGACAGCATGCAAAAATATTTTT 58.997 32.000 21.98 18.40 42.53 1.94
425 786 5.412286 GTGGGACAGCATGCAAAAATATTTT 59.588 36.000 21.98 7.64 41.80 1.82
426 787 4.937015 GTGGGACAGCATGCAAAAATATTT 59.063 37.500 21.98 0.00 41.80 1.40
427 788 4.506758 GTGGGACAGCATGCAAAAATATT 58.493 39.130 21.98 0.00 41.80 1.28
428 789 3.429272 CGTGGGACAGCATGCAAAAATAT 60.429 43.478 21.98 0.00 41.80 1.28
429 790 2.094803 CGTGGGACAGCATGCAAAAATA 60.095 45.455 21.98 0.00 41.80 1.40
430 791 1.337074 CGTGGGACAGCATGCAAAAAT 60.337 47.619 21.98 0.00 41.80 1.82
431 792 0.031857 CGTGGGACAGCATGCAAAAA 59.968 50.000 21.98 0.00 41.80 1.94
432 793 1.106351 ACGTGGGACAGCATGCAAAA 61.106 50.000 21.98 0.00 41.80 2.44
433 794 0.250510 TACGTGGGACAGCATGCAAA 60.251 50.000 21.98 0.00 41.80 3.68
434 795 0.953471 GTACGTGGGACAGCATGCAA 60.953 55.000 21.98 0.00 41.80 4.08
435 796 1.375396 GTACGTGGGACAGCATGCA 60.375 57.895 21.98 0.00 41.80 3.96
436 797 1.375396 TGTACGTGGGACAGCATGC 60.375 57.895 10.51 10.51 41.80 4.06
437 798 0.320334 TGTGTACGTGGGACAGCATG 60.320 55.000 0.00 0.00 41.80 4.06
438 799 0.394938 TTGTGTACGTGGGACAGCAT 59.605 50.000 0.00 0.00 41.80 3.79
439 800 0.178301 TTTGTGTACGTGGGACAGCA 59.822 50.000 0.00 0.00 41.80 4.41
440 801 1.301423 TTTTGTGTACGTGGGACAGC 58.699 50.000 0.00 0.00 41.80 4.40
441 802 2.225491 CCATTTTGTGTACGTGGGACAG 59.775 50.000 0.00 0.00 41.80 3.51
442 803 2.158798 TCCATTTTGTGTACGTGGGACA 60.159 45.455 0.00 0.00 0.00 4.02
443 804 2.482721 CTCCATTTTGTGTACGTGGGAC 59.517 50.000 0.00 0.00 0.00 4.46
444 805 2.369203 TCTCCATTTTGTGTACGTGGGA 59.631 45.455 0.00 0.00 0.00 4.37
445 806 2.773487 TCTCCATTTTGTGTACGTGGG 58.227 47.619 0.00 0.00 0.00 4.61
446 807 4.215399 ACATTCTCCATTTTGTGTACGTGG 59.785 41.667 0.00 0.00 0.00 4.94
447 808 5.356882 ACATTCTCCATTTTGTGTACGTG 57.643 39.130 0.00 0.00 0.00 4.49
448 809 4.151689 CGACATTCTCCATTTTGTGTACGT 59.848 41.667 0.00 0.00 0.00 3.57
449 810 4.151689 ACGACATTCTCCATTTTGTGTACG 59.848 41.667 0.00 0.00 0.00 3.67
450 811 5.607119 ACGACATTCTCCATTTTGTGTAC 57.393 39.130 0.00 0.00 0.00 2.90
451 812 6.627395 AAACGACATTCTCCATTTTGTGTA 57.373 33.333 0.00 0.00 0.00 2.90
452 813 5.514274 AAACGACATTCTCCATTTTGTGT 57.486 34.783 0.00 0.00 0.00 3.72
453 814 5.175491 CCAAAACGACATTCTCCATTTTGTG 59.825 40.000 0.00 0.00 36.00 3.33
454 815 5.288804 CCAAAACGACATTCTCCATTTTGT 58.711 37.500 0.00 0.00 36.00 2.83
455 816 4.150451 GCCAAAACGACATTCTCCATTTTG 59.850 41.667 0.00 0.00 36.99 2.44
456 817 4.039124 AGCCAAAACGACATTCTCCATTTT 59.961 37.500 0.00 0.00 0.00 1.82
457 818 3.573967 AGCCAAAACGACATTCTCCATTT 59.426 39.130 0.00 0.00 0.00 2.32
458 819 3.157087 AGCCAAAACGACATTCTCCATT 58.843 40.909 0.00 0.00 0.00 3.16
459 820 2.749621 GAGCCAAAACGACATTCTCCAT 59.250 45.455 0.00 0.00 0.00 3.41
460 821 2.151202 GAGCCAAAACGACATTCTCCA 58.849 47.619 0.00 0.00 0.00 3.86
461 822 1.468914 GGAGCCAAAACGACATTCTCC 59.531 52.381 0.00 0.00 32.89 3.71
462 823 1.468914 GGGAGCCAAAACGACATTCTC 59.531 52.381 0.00 0.00 0.00 2.87
463 824 1.202879 TGGGAGCCAAAACGACATTCT 60.203 47.619 0.00 0.00 0.00 2.40
464 825 1.200020 CTGGGAGCCAAAACGACATTC 59.800 52.381 0.00 0.00 30.80 2.67
465 826 1.247567 CTGGGAGCCAAAACGACATT 58.752 50.000 0.00 0.00 30.80 2.71
466 827 0.609131 CCTGGGAGCCAAAACGACAT 60.609 55.000 0.00 0.00 30.80 3.06
467 828 1.228124 CCTGGGAGCCAAAACGACA 60.228 57.895 0.00 0.00 30.80 4.35
468 829 0.955919 CTCCTGGGAGCCAAAACGAC 60.956 60.000 3.52 0.00 35.31 4.34
469 830 1.374947 CTCCTGGGAGCCAAAACGA 59.625 57.895 3.52 0.00 35.31 3.85
470 831 3.987404 CTCCTGGGAGCCAAAACG 58.013 61.111 3.52 0.00 35.31 3.60
484 845 2.926778 ACTATTCATGCAGGAGCTCC 57.073 50.000 26.22 26.22 42.74 4.70
485 846 5.118990 TGTTTACTATTCATGCAGGAGCTC 58.881 41.667 4.71 4.71 42.74 4.09
486 847 5.102953 TGTTTACTATTCATGCAGGAGCT 57.897 39.130 0.00 0.00 42.74 4.09
487 848 5.818136 TTGTTTACTATTCATGCAGGAGC 57.182 39.130 0.00 0.00 42.57 4.70
545 906 5.051508 GCGACACTAACACGAACTCTAAAAA 60.052 40.000 0.00 0.00 0.00 1.94
546 907 4.442073 GCGACACTAACACGAACTCTAAAA 59.558 41.667 0.00 0.00 0.00 1.52
547 908 3.976942 GCGACACTAACACGAACTCTAAA 59.023 43.478 0.00 0.00 0.00 1.85
548 909 3.003585 TGCGACACTAACACGAACTCTAA 59.996 43.478 0.00 0.00 0.00 2.10
549 910 2.549329 TGCGACACTAACACGAACTCTA 59.451 45.455 0.00 0.00 0.00 2.43
550 911 1.335810 TGCGACACTAACACGAACTCT 59.664 47.619 0.00 0.00 0.00 3.24
551 912 1.762419 TGCGACACTAACACGAACTC 58.238 50.000 0.00 0.00 0.00 3.01
552 913 2.058798 CATGCGACACTAACACGAACT 58.941 47.619 0.00 0.00 0.00 3.01
553 914 1.461888 GCATGCGACACTAACACGAAC 60.462 52.381 0.00 0.00 0.00 3.95
554 915 0.787787 GCATGCGACACTAACACGAA 59.212 50.000 0.00 0.00 0.00 3.85
555 916 0.319125 TGCATGCGACACTAACACGA 60.319 50.000 14.09 0.00 0.00 4.35
556 917 0.721154 ATGCATGCGACACTAACACG 59.279 50.000 14.09 0.00 0.00 4.49
557 918 1.062587 GGATGCATGCGACACTAACAC 59.937 52.381 14.09 0.00 0.00 3.32
558 919 1.066215 AGGATGCATGCGACACTAACA 60.066 47.619 14.09 0.00 0.00 2.41
559 920 1.594862 GAGGATGCATGCGACACTAAC 59.405 52.381 14.09 0.00 0.00 2.34
560 921 1.206849 TGAGGATGCATGCGACACTAA 59.793 47.619 14.09 0.00 0.00 2.24
561 922 0.823460 TGAGGATGCATGCGACACTA 59.177 50.000 14.09 0.00 0.00 2.74
562 923 0.036105 TTGAGGATGCATGCGACACT 60.036 50.000 14.09 8.45 0.00 3.55
563 924 0.804364 TTTGAGGATGCATGCGACAC 59.196 50.000 14.09 4.97 0.00 3.67
564 925 1.532523 TTTTGAGGATGCATGCGACA 58.467 45.000 14.09 13.81 0.00 4.35
565 926 2.634982 TTTTTGAGGATGCATGCGAC 57.365 45.000 14.09 11.42 0.00 5.19
582 943 6.036300 CACAGTTGCTGTTTCACATGATTTTT 59.964 34.615 0.00 0.00 42.59 1.94
583 944 5.521010 CACAGTTGCTGTTTCACATGATTTT 59.479 36.000 0.00 0.00 42.59 1.82
584 945 5.045215 CACAGTTGCTGTTTCACATGATTT 58.955 37.500 0.00 0.00 42.59 2.17
585 946 4.098349 ACACAGTTGCTGTTTCACATGATT 59.902 37.500 0.00 0.00 42.59 2.57
586 947 3.633525 ACACAGTTGCTGTTTCACATGAT 59.366 39.130 0.00 0.00 42.59 2.45
587 948 3.016031 ACACAGTTGCTGTTTCACATGA 58.984 40.909 0.00 0.00 42.59 3.07
588 949 3.425577 ACACAGTTGCTGTTTCACATG 57.574 42.857 0.00 0.00 42.59 3.21
589 950 4.454728 AAACACAGTTGCTGTTTCACAT 57.545 36.364 0.00 0.00 42.59 3.21
590 951 3.932545 AAACACAGTTGCTGTTTCACA 57.067 38.095 0.00 0.00 42.59 3.58
594 955 6.035843 CACTAATGAAACACAGTTGCTGTTT 58.964 36.000 1.04 1.04 42.59 2.83
595 956 5.356751 TCACTAATGAAACACAGTTGCTGTT 59.643 36.000 0.00 0.00 42.59 3.16
596 957 4.881273 TCACTAATGAAACACAGTTGCTGT 59.119 37.500 0.00 0.00 46.51 4.40
597 958 5.422666 TCACTAATGAAACACAGTTGCTG 57.577 39.130 0.00 0.00 37.52 4.41
620 981 8.482128 TCAAAATGTCACCCTAGATTTGTTTTT 58.518 29.630 0.00 0.00 0.00 1.94
621 982 8.017418 TCAAAATGTCACCCTAGATTTGTTTT 57.983 30.769 0.00 0.00 0.00 2.43
622 983 7.595819 TCAAAATGTCACCCTAGATTTGTTT 57.404 32.000 0.00 0.00 0.00 2.83
623 984 7.287696 ACTTCAAAATGTCACCCTAGATTTGTT 59.712 33.333 0.00 0.00 0.00 2.83
624 985 6.777580 ACTTCAAAATGTCACCCTAGATTTGT 59.222 34.615 0.00 0.00 0.00 2.83
625 986 7.219484 ACTTCAAAATGTCACCCTAGATTTG 57.781 36.000 0.00 0.00 0.00 2.32
626 987 8.793592 GTTACTTCAAAATGTCACCCTAGATTT 58.206 33.333 0.00 0.00 0.00 2.17
627 988 7.942341 TGTTACTTCAAAATGTCACCCTAGATT 59.058 33.333 0.00 0.00 0.00 2.40
628 989 7.458397 TGTTACTTCAAAATGTCACCCTAGAT 58.542 34.615 0.00 0.00 0.00 1.98
629 990 6.833041 TGTTACTTCAAAATGTCACCCTAGA 58.167 36.000 0.00 0.00 0.00 2.43
630 991 7.687941 ATGTTACTTCAAAATGTCACCCTAG 57.312 36.000 0.00 0.00 0.00 3.02
631 992 8.356657 CAAATGTTACTTCAAAATGTCACCCTA 58.643 33.333 0.00 0.00 0.00 3.53
632 993 6.976934 AATGTTACTTCAAAATGTCACCCT 57.023 33.333 0.00 0.00 0.00 4.34
633 994 6.983890 ACAAATGTTACTTCAAAATGTCACCC 59.016 34.615 0.00 0.00 0.00 4.61
634 995 8.327429 CAACAAATGTTACTTCAAAATGTCACC 58.673 33.333 0.00 0.00 36.32 4.02
635 996 8.868916 ACAACAAATGTTACTTCAAAATGTCAC 58.131 29.630 0.00 0.00 40.06 3.67
636 997 8.994429 ACAACAAATGTTACTTCAAAATGTCA 57.006 26.923 0.00 0.00 40.06 3.58
667 1028 7.772757 AGATTAAACATTTTGGCCTGTGAAAAA 59.227 29.630 3.32 1.83 0.00 1.94
668 1029 7.278875 AGATTAAACATTTTGGCCTGTGAAAA 58.721 30.769 3.32 2.26 0.00 2.29
669 1030 6.825610 AGATTAAACATTTTGGCCTGTGAAA 58.174 32.000 3.32 0.20 0.00 2.69
670 1031 6.418057 AGATTAAACATTTTGGCCTGTGAA 57.582 33.333 3.32 0.00 0.00 3.18
671 1032 6.418057 AAGATTAAACATTTTGGCCTGTGA 57.582 33.333 3.32 0.00 0.00 3.58
672 1033 7.495135 AAAAGATTAAACATTTTGGCCTGTG 57.505 32.000 3.32 0.00 0.00 3.66
673 1034 6.423604 CGAAAAGATTAAACATTTTGGCCTGT 59.576 34.615 3.32 0.00 0.00 4.00
674 1035 6.423604 ACGAAAAGATTAAACATTTTGGCCTG 59.576 34.615 3.32 0.00 0.00 4.85
675 1036 6.521162 ACGAAAAGATTAAACATTTTGGCCT 58.479 32.000 3.32 0.00 0.00 5.19
676 1037 6.645003 AGACGAAAAGATTAAACATTTTGGCC 59.355 34.615 0.00 0.00 0.00 5.36
677 1038 7.637709 AGACGAAAAGATTAAACATTTTGGC 57.362 32.000 5.88 2.96 0.00 4.52
678 1039 9.672086 TGTAGACGAAAAGATTAAACATTTTGG 57.328 29.630 5.88 5.22 0.00 3.28
684 1045 9.672086 CCAAATTGTAGACGAAAAGATTAAACA 57.328 29.630 0.00 0.00 0.00 2.83
685 1046 9.673454 ACCAAATTGTAGACGAAAAGATTAAAC 57.327 29.630 0.00 0.00 0.00 2.01
687 1048 9.672086 CAACCAAATTGTAGACGAAAAGATTAA 57.328 29.630 0.00 0.00 33.20 1.40
703 1064 3.023946 TCCAATGCGACAACCAAATTG 57.976 42.857 0.00 0.00 44.60 2.32
704 1065 3.006752 ACATCCAATGCGACAACCAAATT 59.993 39.130 0.00 0.00 0.00 1.82
705 1066 2.562298 ACATCCAATGCGACAACCAAAT 59.438 40.909 0.00 0.00 0.00 2.32
706 1067 1.959985 ACATCCAATGCGACAACCAAA 59.040 42.857 0.00 0.00 0.00 3.28
707 1068 1.269174 CACATCCAATGCGACAACCAA 59.731 47.619 0.00 0.00 0.00 3.67
708 1069 0.880441 CACATCCAATGCGACAACCA 59.120 50.000 0.00 0.00 0.00 3.67
709 1070 1.135689 GTCACATCCAATGCGACAACC 60.136 52.381 3.81 0.00 40.92 3.77
710 1071 1.535028 TGTCACATCCAATGCGACAAC 59.465 47.619 8.01 0.00 45.98 3.32
711 1072 1.889545 TGTCACATCCAATGCGACAA 58.110 45.000 8.01 0.00 45.98 3.18
712 1073 1.889545 TTGTCACATCCAATGCGACA 58.110 45.000 6.67 6.67 46.91 4.35
713 1074 2.987413 TTTGTCACATCCAATGCGAC 57.013 45.000 2.01 2.01 41.45 5.19
714 1075 4.457257 TGTATTTTGTCACATCCAATGCGA 59.543 37.500 0.00 0.00 0.00 5.10
715 1076 4.558470 GTGTATTTTGTCACATCCAATGCG 59.442 41.667 0.00 0.00 35.04 4.73
716 1077 5.468592 TGTGTATTTTGTCACATCCAATGC 58.531 37.500 0.00 0.00 39.23 3.56
783 1144 1.510623 GAAACGCGTGCTCTGCATG 60.511 57.895 14.98 7.33 46.98 4.06
784 1145 1.669115 AGAAACGCGTGCTCTGCAT 60.669 52.632 14.98 0.00 41.91 3.96
785 1146 2.280119 AGAAACGCGTGCTCTGCA 60.280 55.556 14.98 0.00 35.60 4.41
786 1147 2.171940 CAGAAACGCGTGCTCTGC 59.828 61.111 28.34 8.42 30.91 4.26
787 1148 2.671177 CCCAGAAACGCGTGCTCTG 61.671 63.158 30.65 30.65 37.03 3.35
788 1149 2.357517 CCCAGAAACGCGTGCTCT 60.358 61.111 14.98 15.75 0.00 4.09
789 1150 2.357034 TCCCAGAAACGCGTGCTC 60.357 61.111 14.98 13.40 0.00 4.26
790 1151 2.357517 CTCCCAGAAACGCGTGCT 60.358 61.111 14.98 11.28 0.00 4.40
791 1152 4.090057 GCTCCCAGAAACGCGTGC 62.090 66.667 14.98 8.64 0.00 5.34
792 1153 2.664851 TGCTCCCAGAAACGCGTG 60.665 61.111 14.98 0.00 0.00 5.34
793 1154 2.665185 GTGCTCCCAGAAACGCGT 60.665 61.111 5.58 5.58 0.00 6.01
794 1155 3.423154 GGTGCTCCCAGAAACGCG 61.423 66.667 3.53 3.53 0.00 6.01
795 1156 1.896660 TTGGTGCTCCCAGAAACGC 60.897 57.895 1.59 0.00 46.31 4.84
796 1157 1.841663 CGTTGGTGCTCCCAGAAACG 61.842 60.000 11.98 11.98 46.31 3.60
797 1158 1.515521 CCGTTGGTGCTCCCAGAAAC 61.516 60.000 1.59 0.00 46.31 2.78
798 1159 1.228124 CCGTTGGTGCTCCCAGAAA 60.228 57.895 1.59 0.00 46.31 2.52
799 1160 1.488705 ATCCGTTGGTGCTCCCAGAA 61.489 55.000 1.59 0.00 46.31 3.02
800 1161 1.488705 AATCCGTTGGTGCTCCCAGA 61.489 55.000 1.59 0.00 46.31 3.86
801 1162 0.609131 AAATCCGTTGGTGCTCCCAG 60.609 55.000 1.59 0.00 46.31 4.45
802 1163 0.608035 GAAATCCGTTGGTGCTCCCA 60.608 55.000 1.59 0.00 43.27 4.37
803 1164 1.313091 GGAAATCCGTTGGTGCTCCC 61.313 60.000 1.59 0.00 0.00 4.30
804 1165 2.180674 GGAAATCCGTTGGTGCTCC 58.819 57.895 0.00 0.00 0.00 4.70
830 1191 7.984050 TCAGCAAGTTGGAAAAACAAATGATAA 59.016 29.630 4.75 0.00 31.17 1.75
879 1240 4.141620 ACCTGTCAGTGTGAAGAGACAAAT 60.142 41.667 0.00 0.00 40.14 2.32
880 1241 3.197766 ACCTGTCAGTGTGAAGAGACAAA 59.802 43.478 0.00 0.00 40.14 2.83
882 1243 2.101415 CACCTGTCAGTGTGAAGAGACA 59.899 50.000 13.32 0.00 38.56 3.41
933 1318 8.706322 AGATAAGGTTAGATTTCTCCTCTCTC 57.294 38.462 0.00 0.00 0.00 3.20
963 1349 1.935933 GCGGGAAAGAGAAGCGATTA 58.064 50.000 0.00 0.00 0.00 1.75
964 1350 2.768834 GCGGGAAAGAGAAGCGATT 58.231 52.632 0.00 0.00 0.00 3.34
968 1354 2.101233 GGACGCGGGAAAGAGAAGC 61.101 63.158 12.47 0.00 0.00 3.86
970 1356 2.260434 CGGACGCGGGAAAGAGAA 59.740 61.111 12.47 0.00 0.00 2.87
971 1357 2.986306 GACGGACGCGGGAAAGAGA 61.986 63.158 12.47 0.00 0.00 3.10
972 1358 2.506438 GACGGACGCGGGAAAGAG 60.506 66.667 12.47 0.00 0.00 2.85
973 1359 4.060038 GGACGGACGCGGGAAAGA 62.060 66.667 12.47 0.00 0.00 2.52
1674 3230 9.645128 ATGATCCATTGGTTGATTACTTGATTA 57.355 29.630 1.86 0.00 0.00 1.75
1675 3231 7.959658 TGATCCATTGGTTGATTACTTGATT 57.040 32.000 1.86 0.00 0.00 2.57
1676 3232 8.418662 CAATGATCCATTGGTTGATTACTTGAT 58.581 33.333 10.85 0.00 45.03 2.57
1677 3233 7.774134 CAATGATCCATTGGTTGATTACTTGA 58.226 34.615 10.85 0.00 45.03 3.02
1678 3234 7.997107 CAATGATCCATTGGTTGATTACTTG 57.003 36.000 10.85 0.00 45.03 3.16
1747 3303 4.083537 CGAAAAATGACCGAGATTGTTCCA 60.084 41.667 0.00 0.00 0.00 3.53
1807 3366 6.015434 AGCTTTTCGAAAAGTACCATCCAAAT 60.015 34.615 37.54 15.67 45.48 2.32
1846 3405 2.540145 GCGAAATATACCGCCCCTG 58.460 57.895 9.67 0.00 45.06 4.45
2076 4125 2.108514 CATCATGTCGCCGTGCCTT 61.109 57.895 0.00 0.00 0.00 4.35
2491 4548 6.486056 AGTAGTCCTCACTCTTGTCATAGAA 58.514 40.000 0.00 0.00 33.62 2.10
2524 4581 1.673400 CATCTCCGAGAAGAGCGAGAA 59.327 52.381 1.27 0.00 33.66 2.87
2720 4777 3.152341 ACCTGCAATGCCTTATCATAGC 58.848 45.455 1.53 0.00 0.00 2.97
2928 4992 3.008375 TGAATGCACTTGCCTTCTCTAGT 59.992 43.478 16.87 0.00 43.20 2.57
2971 5035 2.224967 GGGCCTCATCAAGCTGGATATT 60.225 50.000 2.41 0.00 0.00 1.28
3027 5091 2.031012 GCATCGGCGATCATCCCA 59.969 61.111 21.25 0.00 0.00 4.37
3055 5119 5.384336 TCCACCATTGTTCATCTCTTTCAA 58.616 37.500 0.00 0.00 0.00 2.69
3128 5192 4.037923 CCTGCATTACACTGGTTCTGTTTT 59.962 41.667 0.00 0.00 0.00 2.43
3144 5208 4.579869 ACGAACTATCTTGTTCCTGCATT 58.420 39.130 0.00 0.00 42.22 3.56
3193 5257 4.072088 CGCGTTCAGTGCCGAACC 62.072 66.667 0.00 0.00 41.89 3.62
3363 5427 1.981256 TGTCCTCCCTGCAGAAAAAC 58.019 50.000 17.39 7.24 0.00 2.43
3391 5455 5.633830 TCAGCTGTTCATGAAGGAATTTC 57.366 39.130 14.67 0.00 36.29 2.17
3524 5589 1.500736 AGGCCCTCCTATTGGAAATGG 59.499 52.381 0.00 0.02 42.06 3.16
3526 5591 2.175715 GACAGGCCCTCCTATTGGAAAT 59.824 50.000 0.00 0.00 41.93 2.17
3596 5661 7.716998 AGCCATTTTCATAAAGAGATGATACGT 59.283 33.333 0.00 0.00 35.77 3.57
3773 5839 3.583086 TCCTGAAACTTTCCTGGGAGTAG 59.417 47.826 4.46 0.25 0.00 2.57
3826 5892 3.369147 CAGTATCAAGCTCAACTTCACCG 59.631 47.826 0.00 0.00 36.04 4.94
3930 5998 0.243636 CACCCACGCCCTGAAAATTC 59.756 55.000 0.00 0.00 0.00 2.17
3943 6011 1.000896 AGTTAGCCATGGCACCCAC 60.001 57.895 37.18 25.29 44.88 4.61
4168 8850 9.283768 TGAACAAGAAAACTGAAGCTAATGATA 57.716 29.630 0.00 0.00 0.00 2.15
4343 9025 8.482852 TGAAAAGGGAAATCTTCTTTGATTCT 57.517 30.769 0.00 0.00 35.82 2.40
4467 9553 2.689983 CCTTTCCAGGCATGATACCAAC 59.310 50.000 0.00 0.00 31.53 3.77
4664 9750 3.031916 TCGAGTCGGGAACTTGACT 57.968 52.632 13.54 0.00 42.47 3.41
5005 10092 3.120615 GCTCATAGAGATGAAATGCAGCG 60.121 47.826 0.00 0.00 41.62 5.18
5100 10187 6.552008 TCCAACTTTGATCCAACCTTTAGAT 58.448 36.000 0.00 0.00 0.00 1.98
5162 10249 5.455326 GGAAGATACCTGTGATGGTTGCTAT 60.455 44.000 0.00 0.00 41.22 2.97
5163 10250 4.141711 GGAAGATACCTGTGATGGTTGCTA 60.142 45.833 0.00 0.00 41.22 3.49
5164 10251 3.370953 GGAAGATACCTGTGATGGTTGCT 60.371 47.826 0.00 0.00 41.22 3.91
5165 10252 2.945668 GGAAGATACCTGTGATGGTTGC 59.054 50.000 0.00 0.00 41.22 4.17
5166 10253 4.494091 AGGAAGATACCTGTGATGGTTG 57.506 45.455 0.00 0.00 41.22 3.77
5167 10254 5.520748 AAAGGAAGATACCTGTGATGGTT 57.479 39.130 0.00 0.00 41.22 3.67
5168 10255 5.256474 CAAAAGGAAGATACCTGTGATGGT 58.744 41.667 0.00 0.00 43.66 3.55
5169 10256 4.096984 GCAAAAGGAAGATACCTGTGATGG 59.903 45.833 0.00 0.00 40.49 3.51
5170 10257 4.946157 AGCAAAAGGAAGATACCTGTGATG 59.054 41.667 0.00 0.00 40.49 3.07
5171 10258 5.184892 AGCAAAAGGAAGATACCTGTGAT 57.815 39.130 0.00 0.00 40.49 3.06
5172 10259 4.640771 AGCAAAAGGAAGATACCTGTGA 57.359 40.909 0.00 0.00 40.49 3.58
5173 10260 5.712152 AAAGCAAAAGGAAGATACCTGTG 57.288 39.130 0.00 0.00 40.49 3.66
5174 10261 5.509670 GCAAAAGCAAAAGGAAGATACCTGT 60.510 40.000 0.00 0.00 40.49 4.00
5175 10262 4.925646 GCAAAAGCAAAAGGAAGATACCTG 59.074 41.667 0.00 0.00 40.49 4.00
5176 10263 4.588528 TGCAAAAGCAAAAGGAAGATACCT 59.411 37.500 0.00 0.00 42.69 3.08
5177 10264 4.881920 TGCAAAAGCAAAAGGAAGATACC 58.118 39.130 0.00 0.00 0.00 2.73
5178 10265 5.928264 ACATGCAAAAGCAAAAGGAAGATAC 59.072 36.000 0.00 0.00 0.00 2.24
5179 10266 6.100404 ACATGCAAAAGCAAAAGGAAGATA 57.900 33.333 0.00 0.00 0.00 1.98
5180 10267 4.964593 ACATGCAAAAGCAAAAGGAAGAT 58.035 34.783 0.00 0.00 0.00 2.40
5181 10268 4.405116 ACATGCAAAAGCAAAAGGAAGA 57.595 36.364 0.00 0.00 0.00 2.87
5182 10269 5.697633 ACATACATGCAAAAGCAAAAGGAAG 59.302 36.000 0.00 0.00 0.00 3.46
5183 10270 5.609423 ACATACATGCAAAAGCAAAAGGAA 58.391 33.333 0.00 0.00 0.00 3.36
5184 10271 5.212532 ACATACATGCAAAAGCAAAAGGA 57.787 34.783 0.00 0.00 0.00 3.36
5185 10272 5.106987 GGAACATACATGCAAAAGCAAAAGG 60.107 40.000 0.00 0.00 0.00 3.11
5186 10273 5.106987 GGGAACATACATGCAAAAGCAAAAG 60.107 40.000 0.00 0.00 0.00 2.27
5187 10274 4.754114 GGGAACATACATGCAAAAGCAAAA 59.246 37.500 0.00 0.00 0.00 2.44
5188 10275 4.202295 TGGGAACATACATGCAAAAGCAAA 60.202 37.500 0.00 0.00 33.40 3.68
5189 10276 3.323115 TGGGAACATACATGCAAAAGCAA 59.677 39.130 0.00 0.00 33.40 3.91
5190 10277 2.896044 TGGGAACATACATGCAAAAGCA 59.104 40.909 0.00 0.00 33.40 3.91
5191 10278 3.591196 TGGGAACATACATGCAAAAGC 57.409 42.857 0.00 0.00 33.40 3.51
5205 10292 3.620488 TGGTTGCTATCTTGATGGGAAC 58.380 45.455 17.99 17.99 33.78 3.62
5206 10293 4.079844 TGATGGTTGCTATCTTGATGGGAA 60.080 41.667 0.00 0.00 0.00 3.97
5207 10294 3.459227 TGATGGTTGCTATCTTGATGGGA 59.541 43.478 0.00 0.00 0.00 4.37
5208 10295 3.567164 GTGATGGTTGCTATCTTGATGGG 59.433 47.826 0.00 0.00 0.00 4.00
5209 10296 4.201657 TGTGATGGTTGCTATCTTGATGG 58.798 43.478 0.00 0.00 0.00 3.51
5210 10297 4.275196 CCTGTGATGGTTGCTATCTTGATG 59.725 45.833 0.00 0.00 0.00 3.07
5211 10298 4.080129 ACCTGTGATGGTTGCTATCTTGAT 60.080 41.667 0.00 0.00 36.89 2.57
5212 10299 3.264193 ACCTGTGATGGTTGCTATCTTGA 59.736 43.478 0.00 0.00 36.89 3.02
5213 10300 3.614092 ACCTGTGATGGTTGCTATCTTG 58.386 45.455 0.00 0.00 36.89 3.02
5214 10301 5.367937 AGATACCTGTGATGGTTGCTATCTT 59.632 40.000 0.00 0.00 41.22 2.40
5215 10302 4.904251 AGATACCTGTGATGGTTGCTATCT 59.096 41.667 0.00 0.00 41.22 1.98
5216 10303 5.220710 AGATACCTGTGATGGTTGCTATC 57.779 43.478 0.00 0.00 41.22 2.08
5217 10304 5.455326 GGAAGATACCTGTGATGGTTGCTAT 60.455 44.000 0.00 0.00 41.22 2.97
5309 10396 8.083462 TCATCTAGAACAACATACACAACAAC 57.917 34.615 0.00 0.00 0.00 3.32
5957 11048 1.740025 GTAAACCATCTGCTGCTCACC 59.260 52.381 0.00 0.00 0.00 4.02
5968 11059 3.259902 GAACCGGAGACTGTAAACCATC 58.740 50.000 9.46 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.