Multiple sequence alignment - TraesCS6B01G367100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G367100 chr6B 100.000 4535 0 0 1 4535 640981601 640977067 0.000000e+00 8375.0
1 TraesCS6B01G367100 chr6B 88.554 166 14 2 632 792 641022954 641022789 3.580000e-46 196.0
2 TraesCS6B01G367100 chr6B 87.421 159 9 5 3446 3604 640977932 640977785 6.030000e-39 172.0
3 TraesCS6B01G367100 chr6B 87.421 159 9 5 3670 3817 640978156 640977998 6.030000e-39 172.0
4 TraesCS6B01G367100 chr6B 97.436 39 1 0 559 597 640981008 640980970 2.930000e-07 67.6
5 TraesCS6B01G367100 chr6B 97.436 39 1 0 594 632 640981043 640981005 2.930000e-07 67.6
6 TraesCS6B01G367100 chr6B 83.582 67 3 5 467 532 641023064 641023005 6.340000e-04 56.5
7 TraesCS6B01G367100 chr6D 89.861 3156 160 72 594 3666 425904868 425901790 0.000000e+00 3908.0
8 TraesCS6B01G367100 chr6D 91.619 704 42 13 3843 4535 425901795 425901098 0.000000e+00 957.0
9 TraesCS6B01G367100 chr6D 84.691 405 21 10 12 414 425905338 425904973 2.580000e-97 366.0
10 TraesCS6B01G367100 chr6D 89.542 153 11 2 630 777 425912109 425911957 5.990000e-44 189.0
11 TraesCS6B01G367100 chr6D 84.916 179 11 10 235 412 425912715 425912552 2.810000e-37 167.0
12 TraesCS6B01G367100 chr6D 94.340 106 3 2 780 885 425910603 425910501 4.700000e-35 159.0
13 TraesCS6B01G367100 chr6D 75.926 378 47 30 56 414 425946382 425946030 2.180000e-33 154.0
14 TraesCS6B01G367100 chr6D 84.242 165 6 8 3669 3817 425902012 425901852 4.730000e-30 143.0
15 TraesCS6B01G367100 chr6D 90.625 64 6 0 618 681 425912362 425912299 8.080000e-13 86.1
16 TraesCS6B01G367100 chr6A 90.885 1909 87 33 597 2455 570384728 570382857 0.000000e+00 2481.0
17 TraesCS6B01G367100 chr6A 88.181 1303 81 30 2427 3666 570382837 570381545 0.000000e+00 1485.0
18 TraesCS6B01G367100 chr6A 93.883 703 21 11 3843 4535 570381550 570380860 0.000000e+00 1040.0
19 TraesCS6B01G367100 chr6A 83.500 600 35 26 12 597 570385242 570384693 6.770000e-138 501.0
20 TraesCS6B01G367100 chr6A 89.811 265 20 5 623 885 570388230 570387971 2.610000e-87 333.0
21 TraesCS6B01G367100 chr6A 83.871 186 12 8 3669 3839 570381777 570381595 1.310000e-35 161.0
22 TraesCS6B01G367100 chr6A 87.719 114 13 1 394 507 570388420 570388308 1.020000e-26 132.0
23 TraesCS6B01G367100 chr6A 77.778 162 15 11 370 529 570454090 570453948 3.760000e-11 80.5
24 TraesCS6B01G367100 chr6A 88.889 54 5 1 701 753 570448757 570448704 1.050000e-06 65.8
25 TraesCS6B01G367100 chr5D 86.831 486 38 15 2386 2860 39347716 39347246 1.870000e-143 520.0
26 TraesCS6B01G367100 chr7D 85.581 430 55 6 2721 3145 115048475 115048048 1.160000e-120 444.0
27 TraesCS6B01G367100 chr7D 79.474 380 59 16 1562 1930 115049513 115049142 7.530000e-63 252.0
28 TraesCS6B01G367100 chr7B 85.615 431 53 8 2721 3145 74598517 74598090 1.160000e-120 444.0
29 TraesCS6B01G367100 chr7B 77.910 335 43 23 1562 1873 74599986 74599660 3.600000e-41 180.0
30 TraesCS6B01G367100 chr7A 85.615 431 53 8 2721 3145 119702674 119702247 1.160000e-120 444.0
31 TraesCS6B01G367100 chr7A 80.371 377 54 16 1562 1930 119703758 119703394 7.480000e-68 268.0
32 TraesCS6B01G367100 chr7A 76.289 194 44 2 1365 1557 670004663 670004855 8.030000e-18 102.0
33 TraesCS6B01G367100 chr5B 88.274 307 24 5 2462 2766 679342791 679342495 1.550000e-94 357.0
34 TraesCS6B01G367100 chr5B 94.382 89 5 0 3054 3142 679342501 679342413 2.200000e-28 137.0
35 TraesCS6B01G367100 chr5B 92.391 92 7 0 3054 3145 545985475 545985566 1.020000e-26 132.0
36 TraesCS6B01G367100 chr2B 94.505 91 5 0 3054 3144 18322827 18322737 1.700000e-29 141.0
37 TraesCS6B01G367100 chr1B 92.391 92 7 0 3054 3145 617704876 617704785 1.020000e-26 132.0
38 TraesCS6B01G367100 chr1B 91.304 46 3 1 2722 2766 389782790 389782835 1.360000e-05 62.1
39 TraesCS6B01G367100 chr3D 80.292 137 22 5 2849 2983 609739091 609738958 1.040000e-16 99.0
40 TraesCS6B01G367100 chr3A 80.292 137 22 5 2849 2983 743377886 743377753 1.040000e-16 99.0
41 TraesCS6B01G367100 chr3B 79.562 137 23 5 2849 2983 820902637 820902504 4.830000e-15 93.5
42 TraesCS6B01G367100 chr3B 93.478 46 2 1 2722 2766 308418607 308418652 2.930000e-07 67.6
43 TraesCS6B01G367100 chr4D 84.884 86 10 3 2849 2933 135372793 135372710 2.910000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G367100 chr6B 640977067 640981601 4534 True 1770.840000 8375 93.942800 1 4535 5 chr6B.!!$R1 4534
1 TraesCS6B01G367100 chr6D 425901098 425905338 4240 True 1343.500000 3908 87.603250 12 4535 4 chr6D.!!$R2 4523
2 TraesCS6B01G367100 chr6A 570380860 570388420 7560 True 876.142857 2481 88.264286 12 4535 7 chr6A.!!$R3 4523
3 TraesCS6B01G367100 chr7D 115048048 115049513 1465 True 348.000000 444 82.527500 1562 3145 2 chr7D.!!$R1 1583
4 TraesCS6B01G367100 chr7B 74598090 74599986 1896 True 312.000000 444 81.762500 1562 3145 2 chr7B.!!$R1 1583
5 TraesCS6B01G367100 chr7A 119702247 119703758 1511 True 356.000000 444 82.993000 1562 3145 2 chr7A.!!$R1 1583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
786 3988 0.101219 GCCGGAGCAAAATCACCATC 59.899 55.0 5.05 0.0 39.53 3.51 F
1708 4945 0.723981 CTTCAAGAGTAAGCGCCAGC 59.276 55.0 2.29 0.0 45.58 4.85 F
2484 6389 0.175760 GAGCTGGCCAACATAGTCGA 59.824 55.0 7.01 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1719 4956 0.030638 AAGAATTGTGTGGTGCGTGC 59.969 50.0 0.00 0.00 0.00 5.34 R
2684 6598 0.179134 GAGTCAGAATCACCGGTCGG 60.179 60.0 2.59 7.97 42.03 4.79 R
3787 7795 0.038618 GAACACCCATCGTTTTGGCC 60.039 55.0 0.00 0.00 35.29 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 3214 0.318699 CGCGAACTGGTCTTGTCAGA 60.319 55.000 0.00 0.00 36.22 3.27
100 3268 1.447140 GGTGCGTCGCCATCTTACA 60.447 57.895 15.88 0.00 33.65 2.41
116 3284 2.602257 TACAATGGCCATGAGACGAG 57.398 50.000 21.63 6.13 0.00 4.18
120 3288 0.395686 ATGGCCATGAGACGAGGATG 59.604 55.000 20.04 0.00 0.00 3.51
121 3289 1.596477 GGCCATGAGACGAGGATGC 60.596 63.158 0.00 0.00 0.00 3.91
122 3290 1.144716 GCCATGAGACGAGGATGCA 59.855 57.895 0.00 0.00 0.00 3.96
123 3291 0.879400 GCCATGAGACGAGGATGCAG 60.879 60.000 0.00 0.00 0.00 4.41
124 3292 0.749049 CCATGAGACGAGGATGCAGA 59.251 55.000 0.00 0.00 0.00 4.26
140 3308 2.556189 TGCAGAGCAGAGCTATAGCTAC 59.444 50.000 26.95 18.43 42.50 3.58
163 3331 5.590259 ACCATAGCAAAACACCTTAGCATAG 59.410 40.000 0.00 0.00 0.00 2.23
164 3332 5.590259 CCATAGCAAAACACCTTAGCATAGT 59.410 40.000 0.00 0.00 0.00 2.12
165 3333 6.765989 CCATAGCAAAACACCTTAGCATAGTA 59.234 38.462 0.00 0.00 0.00 1.82
166 3334 7.254795 CCATAGCAAAACACCTTAGCATAGTAC 60.255 40.741 0.00 0.00 0.00 2.73
167 3335 5.805728 AGCAAAACACCTTAGCATAGTACT 58.194 37.500 0.00 0.00 0.00 2.73
168 3336 5.875359 AGCAAAACACCTTAGCATAGTACTC 59.125 40.000 0.00 0.00 0.00 2.59
209 3390 2.185004 TCCTTTCCAAAAGCGAGAGG 57.815 50.000 0.00 0.00 33.81 3.69
210 3391 0.523519 CCTTTCCAAAAGCGAGAGGC 59.476 55.000 0.00 0.00 44.05 4.70
221 3402 4.200283 GAGAGGCACCCGCGAGAG 62.200 72.222 8.23 0.00 39.92 3.20
223 3404 4.070552 GAGGCACCCGCGAGAGTT 62.071 66.667 8.23 0.00 39.92 3.01
224 3405 3.991536 GAGGCACCCGCGAGAGTTC 62.992 68.421 8.23 0.00 39.92 3.01
227 3408 3.691342 CACCCGCGAGAGTTCCCA 61.691 66.667 8.23 0.00 0.00 4.37
231 3412 4.796231 CGCGAGAGTTCCCACCCG 62.796 72.222 0.00 0.00 0.00 5.28
233 3414 4.796231 CGAGAGTTCCCACCCGCG 62.796 72.222 0.00 0.00 0.00 6.46
265 3446 2.848310 GACACGTAACAACGCGGG 59.152 61.111 12.47 4.46 36.44 6.13
268 3449 3.039588 ACGTAACAACGCGGGCAG 61.040 61.111 12.47 0.00 36.44 4.85
269 3450 4.439472 CGTAACAACGCGGGCAGC 62.439 66.667 12.47 0.00 43.95 5.25
278 3459 2.439156 GCGGGCAGCTTCTTCCAT 60.439 61.111 1.25 0.00 44.04 3.41
289 3470 4.456222 CAGCTTCTTCCATCATCATCATCC 59.544 45.833 0.00 0.00 0.00 3.51
323 3505 9.715121 ACTCGTATTAAACTGTTAATTTCTCCA 57.285 29.630 0.00 0.00 39.93 3.86
342 3530 6.835174 TCTCCATCTCAAATGCTAGCTAAAT 58.165 36.000 17.23 0.00 0.00 1.40
345 3533 7.508687 TCCATCTCAAATGCTAGCTAAATGTA 58.491 34.615 17.23 0.00 0.00 2.29
346 3534 8.159447 TCCATCTCAAATGCTAGCTAAATGTAT 58.841 33.333 17.23 0.00 0.00 2.29
347 3535 8.790718 CCATCTCAAATGCTAGCTAAATGTATT 58.209 33.333 17.23 2.19 0.00 1.89
359 3547 6.407202 AGCTAAATGTATTCGTTCCTCAACT 58.593 36.000 0.00 0.00 0.00 3.16
392 3580 1.145803 GACGTTGCCAGTTACCTCAC 58.854 55.000 0.00 0.00 0.00 3.51
417 3605 1.871676 CATCCGAAGATGCAGTGATGG 59.128 52.381 0.00 0.00 43.35 3.51
431 3623 5.098211 GCAGTGATGGAAAAGAAATGCTAC 58.902 41.667 0.00 0.00 0.00 3.58
461 3656 8.303876 CAAAACAATAGTAGCAGGTGGTAAAAT 58.696 33.333 0.00 0.00 0.00 1.82
515 3710 5.117355 ACGTACGTACATCCATATCCTTG 57.883 43.478 21.41 6.68 0.00 3.61
516 3711 4.581824 ACGTACGTACATCCATATCCTTGT 59.418 41.667 21.41 7.29 0.00 3.16
519 3714 5.808366 ACGTACATCCATATCCTTGTCAT 57.192 39.130 0.00 0.00 0.00 3.06
521 3716 6.925211 ACGTACATCCATATCCTTGTCATAG 58.075 40.000 0.00 0.00 0.00 2.23
531 3726 1.202533 CCTTGTCATAGTACTGGCCGG 60.203 57.143 11.02 11.02 0.00 6.13
572 3770 3.431912 CGAAACTGCAGTATACTTGCACA 59.568 43.478 22.01 9.19 34.61 4.57
573 3771 4.434725 CGAAACTGCAGTATACTTGCACAG 60.435 45.833 22.01 17.43 34.61 3.66
574 3772 3.961480 ACTGCAGTATACTTGCACAGA 57.039 42.857 20.16 5.78 34.61 3.41
575 3773 3.589988 ACTGCAGTATACTTGCACAGAC 58.410 45.455 20.16 1.55 34.61 3.51
576 3774 3.006859 ACTGCAGTATACTTGCACAGACA 59.993 43.478 20.16 5.00 34.61 3.41
577 3775 3.996363 CTGCAGTATACTTGCACAGACAA 59.004 43.478 19.55 4.49 34.61 3.18
587 3785 5.521516 CTTGCACAGACAAGTACTACATG 57.478 43.478 0.00 0.00 41.74 3.21
588 3786 4.864704 TGCACAGACAAGTACTACATGA 57.135 40.909 0.00 0.00 0.00 3.07
589 3787 4.809673 TGCACAGACAAGTACTACATGAG 58.190 43.478 0.00 0.00 0.00 2.90
590 3788 3.614616 GCACAGACAAGTACTACATGAGC 59.385 47.826 0.00 0.12 0.00 4.26
591 3789 4.619394 GCACAGACAAGTACTACATGAGCT 60.619 45.833 0.00 0.00 0.00 4.09
592 3790 5.393135 GCACAGACAAGTACTACATGAGCTA 60.393 44.000 0.00 0.00 0.00 3.32
593 3791 6.030849 CACAGACAAGTACTACATGAGCTAC 58.969 44.000 0.00 0.00 0.00 3.58
594 3792 5.710567 ACAGACAAGTACTACATGAGCTACA 59.289 40.000 0.00 0.00 0.00 2.74
595 3793 6.127869 ACAGACAAGTACTACATGAGCTACAG 60.128 42.308 0.00 0.00 0.00 2.74
596 3794 5.946972 AGACAAGTACTACATGAGCTACAGT 59.053 40.000 0.00 0.00 0.00 3.55
597 3795 7.065923 CAGACAAGTACTACATGAGCTACAGTA 59.934 40.741 0.00 0.00 0.00 2.74
598 3796 7.776030 AGACAAGTACTACATGAGCTACAGTAT 59.224 37.037 0.00 0.00 0.00 2.12
599 3797 8.975663 ACAAGTACTACATGAGCTACAGTATA 57.024 34.615 0.00 0.00 0.00 1.47
600 3798 8.838365 ACAAGTACTACATGAGCTACAGTATAC 58.162 37.037 0.00 0.00 0.00 1.47
601 3799 9.058174 CAAGTACTACATGAGCTACAGTATACT 57.942 37.037 0.00 0.00 0.00 2.12
602 3800 9.629878 AAGTACTACATGAGCTACAGTATACTT 57.370 33.333 1.56 4.23 0.00 2.24
603 3801 9.058174 AGTACTACATGAGCTACAGTATACTTG 57.942 37.037 1.56 1.88 0.00 3.16
604 3802 6.740110 ACTACATGAGCTACAGTATACTTGC 58.260 40.000 1.56 8.26 0.00 4.01
605 3803 5.598416 ACATGAGCTACAGTATACTTGCA 57.402 39.130 18.57 6.74 0.00 4.08
606 3804 5.352284 ACATGAGCTACAGTATACTTGCAC 58.648 41.667 18.57 14.54 0.00 4.57
609 3807 4.705023 TGAGCTACAGTATACTTGCACAGA 59.295 41.667 18.57 2.37 0.00 3.41
643 3841 1.873863 CTAGAGTCCACACGCGTCA 59.126 57.895 9.86 0.00 0.00 4.35
736 3938 1.469940 CGAGCTAGTCGCATTCACCTT 60.470 52.381 0.00 0.00 43.03 3.50
748 3950 1.611519 TTCACCTTTAACCCAAGCCG 58.388 50.000 0.00 0.00 0.00 5.52
777 3979 2.668212 CCAACTCGCCGGAGCAAA 60.668 61.111 5.05 0.00 44.48 3.68
778 3980 2.258013 CCAACTCGCCGGAGCAAAA 61.258 57.895 5.05 0.00 44.48 2.44
783 3985 1.982073 CTCGCCGGAGCAAAATCACC 61.982 60.000 5.05 0.00 39.83 4.02
784 3986 2.331893 CGCCGGAGCAAAATCACCA 61.332 57.895 5.05 0.00 39.83 4.17
785 3987 1.656818 CGCCGGAGCAAAATCACCAT 61.657 55.000 5.05 0.00 39.83 3.55
786 3988 0.101219 GCCGGAGCAAAATCACCATC 59.899 55.000 5.05 0.00 39.53 3.51
787 3989 1.462616 CCGGAGCAAAATCACCATCA 58.537 50.000 0.00 0.00 0.00 3.07
788 3990 1.818060 CCGGAGCAAAATCACCATCAA 59.182 47.619 0.00 0.00 0.00 2.57
789 3991 2.415893 CCGGAGCAAAATCACCATCAAC 60.416 50.000 0.00 0.00 0.00 3.18
790 3992 2.415893 CGGAGCAAAATCACCATCAACC 60.416 50.000 0.00 0.00 0.00 3.77
791 3993 2.827921 GGAGCAAAATCACCATCAACCT 59.172 45.455 0.00 0.00 0.00 3.50
792 3994 4.016444 GGAGCAAAATCACCATCAACCTA 58.984 43.478 0.00 0.00 0.00 3.08
793 3995 4.646492 GGAGCAAAATCACCATCAACCTAT 59.354 41.667 0.00 0.00 0.00 2.57
867 4069 3.172106 TCCGGCCAGGTCAAACCA 61.172 61.111 2.24 0.00 41.95 3.67
875 4077 3.884900 GGTCAAACCATCGGACCG 58.115 61.111 7.84 7.84 41.43 4.79
891 4093 2.670210 CCGTTCCGTTTACACCCGC 61.670 63.158 0.00 0.00 0.00 6.13
892 4094 2.670210 CGTTCCGTTTACACCCGCC 61.670 63.158 0.00 0.00 0.00 6.13
893 4095 2.032376 TTCCGTTTACACCCGCCC 59.968 61.111 0.00 0.00 0.00 6.13
894 4096 3.880162 TTCCGTTTACACCCGCCCG 62.880 63.158 0.00 0.00 0.00 6.13
964 4172 2.438434 GCCATCCGACCAACCCAG 60.438 66.667 0.00 0.00 0.00 4.45
969 4177 3.953775 CCGACCAACCCAGCACCT 61.954 66.667 0.00 0.00 0.00 4.00
1036 4244 1.019278 CGACCCATCTTGTCAACCCG 61.019 60.000 0.00 0.00 32.91 5.28
1044 4252 1.628340 TCTTGTCAACCCGTCATCCAT 59.372 47.619 0.00 0.00 0.00 3.41
1049 4257 1.563879 TCAACCCGTCATCCATTCCAT 59.436 47.619 0.00 0.00 0.00 3.41
1162 4399 1.034292 GTTCCTGATGGGCTGCTTCC 61.034 60.000 0.00 0.00 34.39 3.46
1705 4942 1.066787 ACCTCTTCAAGAGTAAGCGCC 60.067 52.381 13.58 0.00 40.72 6.53
1706 4943 1.066858 CCTCTTCAAGAGTAAGCGCCA 60.067 52.381 13.58 0.00 40.72 5.69
1708 4945 0.723981 CTTCAAGAGTAAGCGCCAGC 59.276 55.000 2.29 0.00 45.58 4.85
1718 4955 2.410469 GCGCCAGCATCCATTCAC 59.590 61.111 0.00 0.00 44.35 3.18
1719 4956 2.711311 CGCCAGCATCCATTCACG 59.289 61.111 0.00 0.00 0.00 4.35
1720 4957 2.410469 GCCAGCATCCATTCACGC 59.590 61.111 0.00 0.00 0.00 5.34
1722 4959 1.430632 CCAGCATCCATTCACGCAC 59.569 57.895 0.00 0.00 0.00 5.34
1723 4960 1.061411 CAGCATCCATTCACGCACG 59.939 57.895 0.00 0.00 0.00 5.34
1724 4961 2.277501 GCATCCATTCACGCACGC 60.278 61.111 0.00 0.00 0.00 5.34
1725 4962 3.037992 GCATCCATTCACGCACGCA 62.038 57.895 0.00 0.00 0.00 5.24
1727 4964 2.398554 ATCCATTCACGCACGCACC 61.399 57.895 0.00 0.00 0.00 5.01
1728 4965 3.353029 CCATTCACGCACGCACCA 61.353 61.111 0.00 0.00 0.00 4.17
1729 4966 2.127270 CATTCACGCACGCACCAC 60.127 61.111 0.00 0.00 0.00 4.16
1730 4967 2.590291 ATTCACGCACGCACCACA 60.590 55.556 0.00 0.00 0.00 4.17
1731 4968 2.892334 ATTCACGCACGCACCACAC 61.892 57.895 0.00 0.00 0.00 3.82
1773 5028 2.205074 GCCGACATGGTTACTGATCTG 58.795 52.381 0.00 0.00 41.21 2.90
1889 5150 1.381928 GGAGACGCCGGTCATCTACA 61.382 60.000 1.90 0.00 45.92 2.74
2000 5648 2.943033 CACGTTCATACCTCCATTTCCC 59.057 50.000 0.00 0.00 0.00 3.97
2115 5772 1.751924 TGCCAGCACGTTTTAAAACCT 59.248 42.857 22.21 12.59 35.51 3.50
2215 5872 7.646314 CAAAGCCATGGACTTAATCTCTATTG 58.354 38.462 18.40 6.51 0.00 1.90
2216 5873 5.874093 AGCCATGGACTTAATCTCTATTGG 58.126 41.667 18.40 0.00 0.00 3.16
2218 5875 6.558775 AGCCATGGACTTAATCTCTATTGGTA 59.441 38.462 18.40 0.00 0.00 3.25
2219 5876 6.876257 GCCATGGACTTAATCTCTATTGGTAG 59.124 42.308 18.40 0.00 0.00 3.18
2266 5934 4.922692 ACAACCACAATTTGAATATGCGTG 59.077 37.500 2.79 0.00 0.00 5.34
2276 5944 4.209307 TGAATATGCGTGGAACCAGTAA 57.791 40.909 0.00 0.00 0.00 2.24
2277 5945 4.776349 TGAATATGCGTGGAACCAGTAAT 58.224 39.130 0.00 0.00 0.00 1.89
2307 5975 3.367292 CCCGGTTGAATTGTCTCAATTGG 60.367 47.826 11.60 6.90 37.63 3.16
2323 5991 3.224324 GGCTATGCCTCGGACGGA 61.224 66.667 0.73 0.00 46.69 4.69
2463 6360 1.948104 AGAACGCACAAACTGTAGCA 58.052 45.000 0.00 0.00 0.00 3.49
2484 6389 0.175760 GAGCTGGCCAACATAGTCGA 59.824 55.000 7.01 0.00 0.00 4.20
2487 6392 1.943968 GCTGGCCAACATAGTCGAACA 60.944 52.381 7.01 0.00 0.00 3.18
2491 6396 2.747446 GGCCAACATAGTCGAACATGTT 59.253 45.455 11.78 11.78 44.21 2.71
2513 6418 3.876309 AAATCAACCACACCTACACCT 57.124 42.857 0.00 0.00 0.00 4.00
2639 6553 0.309612 CCACCTAAACAACCGTGCAC 59.690 55.000 6.82 6.82 0.00 4.57
2684 6598 0.512952 ACCAGTACACGTACGTCGAC 59.487 55.000 19.94 18.44 42.86 4.20
2703 6617 0.179134 CCGACCGGTGATTCTGACTC 60.179 60.000 14.63 0.00 0.00 3.36
2824 6779 4.175337 ATGGGCACGCACGGCTAT 62.175 61.111 0.00 0.00 0.00 2.97
2899 6854 3.850098 CTTCGGGGTGGTGCTGCTT 62.850 63.158 0.00 0.00 0.00 3.91
3246 7213 4.069232 CGACAAGGCCGCAGAGGA 62.069 66.667 0.00 0.00 45.00 3.71
3256 7223 3.760035 GCAGAGGACGGCGAGGAA 61.760 66.667 16.62 0.00 0.00 3.36
3266 7233 2.347490 GCGAGGAAGCCAAGGACA 59.653 61.111 0.00 0.00 0.00 4.02
3301 7271 2.672996 GCAGCGGCCAGGAAGAAA 60.673 61.111 2.24 0.00 0.00 2.52
3355 7325 2.202756 CCCAAGTACGCGAGCTCC 60.203 66.667 15.93 0.00 0.00 4.70
3428 7401 3.372730 GAGCAACAATGGCCCGCA 61.373 61.111 0.00 0.00 0.00 5.69
3431 7404 2.509786 CAACAATGGCCCGCATGC 60.510 61.111 7.91 7.91 0.00 4.06
3476 7470 9.180678 CAAAGTGTACATAATTGAAAGAACCAC 57.819 33.333 0.00 0.00 0.00 4.16
3500 7494 6.023435 CGATGTGTAATCTGTTGGTTGATTG 58.977 40.000 0.00 0.00 35.01 2.67
3536 7532 9.573133 CTTTTCTTGGTGATTGTATTTGTATCC 57.427 33.333 0.00 0.00 0.00 2.59
3565 7563 7.173390 AGAGCAAAAGGTGTTAGTACAGAATTC 59.827 37.037 0.00 0.00 34.24 2.17
3586 7584 0.965439 TTTTCCAGGCCCAAACGATG 59.035 50.000 0.00 0.00 0.00 3.84
3618 7624 5.673337 TCTTGATTGAGACGTTCCTTTTG 57.327 39.130 0.00 0.00 0.00 2.44
3624 7632 7.488322 TGATTGAGACGTTCCTTTTGAAAAAT 58.512 30.769 0.00 0.00 33.94 1.82
3639 7647 4.417506 TGAAAAATGAATCATCTGCAGCG 58.582 39.130 9.47 2.31 0.00 5.18
3661 7669 4.383770 CGGATTGTTTGGTACAGGGACTAT 60.384 45.833 0.00 0.00 42.39 2.12
3663 7671 6.630863 CGGATTGTTTGGTACAGGGACTATAA 60.631 42.308 0.00 0.00 42.39 0.98
3664 7672 6.541278 GGATTGTTTGGTACAGGGACTATAAC 59.459 42.308 0.00 0.00 42.39 1.89
3665 7673 6.436738 TTGTTTGGTACAGGGACTATAACA 57.563 37.500 0.00 0.00 42.39 2.41
3666 7674 6.045072 TGTTTGGTACAGGGACTATAACAG 57.955 41.667 0.00 0.00 35.96 3.16
3667 7675 5.046159 TGTTTGGTACAGGGACTATAACAGG 60.046 44.000 0.00 0.00 35.96 4.00
3668 7676 4.613265 TGGTACAGGGACTATAACAGGA 57.387 45.455 0.00 0.00 25.58 3.86
3669 7677 5.152306 TGGTACAGGGACTATAACAGGAT 57.848 43.478 0.00 0.00 25.58 3.24
3670 7678 5.535029 TGGTACAGGGACTATAACAGGATT 58.465 41.667 0.00 0.00 25.58 3.01
3671 7679 5.365605 TGGTACAGGGACTATAACAGGATTG 59.634 44.000 0.00 0.00 25.58 2.67
3672 7680 5.365895 GGTACAGGGACTATAACAGGATTGT 59.634 44.000 0.00 0.00 36.02 2.71
3673 7681 6.126854 GGTACAGGGACTATAACAGGATTGTT 60.127 42.308 0.00 0.00 44.13 2.83
3674 7682 5.990668 ACAGGGACTATAACAGGATTGTTC 58.009 41.667 0.00 0.00 41.86 3.18
3675 7683 5.487488 ACAGGGACTATAACAGGATTGTTCA 59.513 40.000 0.00 0.00 41.86 3.18
3676 7684 6.012858 ACAGGGACTATAACAGGATTGTTCAA 60.013 38.462 0.00 0.00 41.86 2.69
3677 7685 6.884295 CAGGGACTATAACAGGATTGTTCAAA 59.116 38.462 0.00 0.00 41.86 2.69
3678 7686 7.066284 CAGGGACTATAACAGGATTGTTCAAAG 59.934 40.741 0.00 0.00 41.86 2.77
3679 7687 6.884836 GGGACTATAACAGGATTGTTCAAAGT 59.115 38.462 0.00 0.22 44.00 2.66
3680 7688 7.148239 GGGACTATAACAGGATTGTTCAAAGTG 60.148 40.741 0.00 0.00 44.00 3.16
3681 7689 7.390718 GGACTATAACAGGATTGTTCAAAGTGT 59.609 37.037 0.00 0.00 44.00 3.55
3682 7690 9.431887 GACTATAACAGGATTGTTCAAAGTGTA 57.568 33.333 0.00 0.00 44.00 2.90
3683 7691 9.216117 ACTATAACAGGATTGTTCAAAGTGTAC 57.784 33.333 0.00 0.00 44.00 2.90
3684 7692 9.214957 CTATAACAGGATTGTTCAAAGTGTACA 57.785 33.333 0.00 0.00 44.00 2.90
3685 7693 6.959639 AACAGGATTGTTCAAAGTGTACAT 57.040 33.333 0.00 0.00 44.00 2.29
3686 7694 9.733556 ATAACAGGATTGTTCAAAGTGTACATA 57.266 29.630 0.00 0.00 44.00 2.29
3687 7695 8.458573 AACAGGATTGTTCAAAGTGTACATAA 57.541 30.769 0.00 0.00 44.00 1.90
3688 7696 8.635765 ACAGGATTGTTCAAAGTGTACATAAT 57.364 30.769 0.00 0.00 32.28 1.28
3689 7697 9.077885 ACAGGATTGTTCAAAGTGTACATAATT 57.922 29.630 0.00 0.00 32.28 1.40
3690 7698 9.345517 CAGGATTGTTCAAAGTGTACATAATTG 57.654 33.333 0.00 5.43 28.00 2.32
3691 7699 9.295825 AGGATTGTTCAAAGTGTACATAATTGA 57.704 29.630 13.62 13.62 28.00 2.57
3692 7700 9.906660 GGATTGTTCAAAGTGTACATAATTGAA 57.093 29.630 20.50 20.50 37.59 2.69
3698 7706 9.959749 TTCAAAGTGTACATAATTGAAAGAACC 57.040 29.630 21.40 0.00 37.14 3.62
3699 7707 9.126151 TCAAAGTGTACATAATTGAAAGAACCA 57.874 29.630 14.68 0.00 0.00 3.67
3700 7708 9.398170 CAAAGTGTACATAATTGAAAGAACCAG 57.602 33.333 0.00 0.00 0.00 4.00
3701 7709 7.687941 AGTGTACATAATTGAAAGAACCAGG 57.312 36.000 0.00 0.00 0.00 4.45
3702 7710 7.458397 AGTGTACATAATTGAAAGAACCAGGA 58.542 34.615 0.00 0.00 0.00 3.86
3703 7711 8.109634 AGTGTACATAATTGAAAGAACCAGGAT 58.890 33.333 0.00 0.00 0.00 3.24
3704 7712 8.184192 GTGTACATAATTGAAAGAACCAGGATG 58.816 37.037 0.00 0.00 0.00 3.51
3705 7713 7.888021 TGTACATAATTGAAAGAACCAGGATGT 59.112 33.333 0.00 0.00 0.00 3.06
3706 7714 7.161773 ACATAATTGAAAGAACCAGGATGTG 57.838 36.000 0.00 0.00 0.00 3.21
3707 7715 6.721208 ACATAATTGAAAGAACCAGGATGTGT 59.279 34.615 0.00 0.00 0.00 3.72
3708 7716 7.888021 ACATAATTGAAAGAACCAGGATGTGTA 59.112 33.333 0.00 0.00 0.00 2.90
3709 7717 8.739039 CATAATTGAAAGAACCAGGATGTGTAA 58.261 33.333 0.00 0.00 0.00 2.41
3710 7718 7.781324 AATTGAAAGAACCAGGATGTGTAAT 57.219 32.000 0.00 0.00 0.00 1.89
3711 7719 6.817765 TTGAAAGAACCAGGATGTGTAATC 57.182 37.500 0.00 0.00 0.00 1.75
3712 7720 6.126863 TGAAAGAACCAGGATGTGTAATCT 57.873 37.500 0.00 0.00 0.00 2.40
3713 7721 5.939883 TGAAAGAACCAGGATGTGTAATCTG 59.060 40.000 0.00 0.00 0.00 2.90
3717 7725 2.923121 CCAGGATGTGTAATCTGGTGG 58.077 52.381 0.00 0.00 41.21 4.61
3718 7726 2.239654 CCAGGATGTGTAATCTGGTGGT 59.760 50.000 0.00 0.00 41.21 4.16
3719 7727 3.308402 CCAGGATGTGTAATCTGGTGGTT 60.308 47.826 0.00 0.00 41.21 3.67
3720 7728 3.691118 CAGGATGTGTAATCTGGTGGTTG 59.309 47.826 0.00 0.00 0.00 3.77
3721 7729 2.423538 GGATGTGTAATCTGGTGGTTGC 59.576 50.000 0.00 0.00 0.00 4.17
3722 7730 2.949177 TGTGTAATCTGGTGGTTGCT 57.051 45.000 0.00 0.00 0.00 3.91
3723 7731 3.222173 TGTGTAATCTGGTGGTTGCTT 57.778 42.857 0.00 0.00 0.00 3.91
3724 7732 3.146066 TGTGTAATCTGGTGGTTGCTTC 58.854 45.455 0.00 0.00 0.00 3.86
3725 7733 3.181445 TGTGTAATCTGGTGGTTGCTTCT 60.181 43.478 0.00 0.00 0.00 2.85
3726 7734 3.821033 GTGTAATCTGGTGGTTGCTTCTT 59.179 43.478 0.00 0.00 0.00 2.52
3727 7735 4.278419 GTGTAATCTGGTGGTTGCTTCTTT 59.722 41.667 0.00 0.00 0.00 2.52
3728 7736 4.892934 TGTAATCTGGTGGTTGCTTCTTTT 59.107 37.500 0.00 0.00 0.00 2.27
3729 7737 4.590850 AATCTGGTGGTTGCTTCTTTTC 57.409 40.909 0.00 0.00 0.00 2.29
3730 7738 3.297134 TCTGGTGGTTGCTTCTTTTCT 57.703 42.857 0.00 0.00 0.00 2.52
3731 7739 3.631250 TCTGGTGGTTGCTTCTTTTCTT 58.369 40.909 0.00 0.00 0.00 2.52
3732 7740 3.381272 TCTGGTGGTTGCTTCTTTTCTTG 59.619 43.478 0.00 0.00 0.00 3.02
3733 7741 2.430332 TGGTGGTTGCTTCTTTTCTTGG 59.570 45.455 0.00 0.00 0.00 3.61
3734 7742 2.430694 GGTGGTTGCTTCTTTTCTTGGT 59.569 45.455 0.00 0.00 0.00 3.67
3735 7743 3.447742 GTGGTTGCTTCTTTTCTTGGTG 58.552 45.455 0.00 0.00 0.00 4.17
3736 7744 3.130340 GTGGTTGCTTCTTTTCTTGGTGA 59.870 43.478 0.00 0.00 0.00 4.02
3737 7745 3.960102 TGGTTGCTTCTTTTCTTGGTGAT 59.040 39.130 0.00 0.00 0.00 3.06
3738 7746 4.405358 TGGTTGCTTCTTTTCTTGGTGATT 59.595 37.500 0.00 0.00 0.00 2.57
3739 7747 4.746611 GGTTGCTTCTTTTCTTGGTGATTG 59.253 41.667 0.00 0.00 0.00 2.67
3740 7748 5.351458 GTTGCTTCTTTTCTTGGTGATTGT 58.649 37.500 0.00 0.00 0.00 2.71
3741 7749 6.460953 GGTTGCTTCTTTTCTTGGTGATTGTA 60.461 38.462 0.00 0.00 0.00 2.41
3742 7750 6.899393 TGCTTCTTTTCTTGGTGATTGTAT 57.101 33.333 0.00 0.00 0.00 2.29
3743 7751 7.288810 TGCTTCTTTTCTTGGTGATTGTATT 57.711 32.000 0.00 0.00 0.00 1.89
3744 7752 7.725251 TGCTTCTTTTCTTGGTGATTGTATTT 58.275 30.769 0.00 0.00 0.00 1.40
3745 7753 7.652909 TGCTTCTTTTCTTGGTGATTGTATTTG 59.347 33.333 0.00 0.00 0.00 2.32
3746 7754 7.653311 GCTTCTTTTCTTGGTGATTGTATTTGT 59.347 33.333 0.00 0.00 0.00 2.83
3750 7758 9.573133 CTTTTCTTGGTGATTGTATTTGTATCC 57.427 33.333 0.00 0.00 0.00 2.59
3751 7759 7.639113 TTCTTGGTGATTGTATTTGTATCCC 57.361 36.000 0.00 0.00 0.00 3.85
3752 7760 6.726379 TCTTGGTGATTGTATTTGTATCCCA 58.274 36.000 0.00 0.00 0.00 4.37
3753 7761 7.178573 TCTTGGTGATTGTATTTGTATCCCAA 58.821 34.615 0.00 0.00 0.00 4.12
3754 7762 7.339212 TCTTGGTGATTGTATTTGTATCCCAAG 59.661 37.037 16.77 16.77 44.06 3.61
3755 7763 6.726379 TGGTGATTGTATTTGTATCCCAAGA 58.274 36.000 0.00 0.00 33.75 3.02
3756 7764 6.828273 TGGTGATTGTATTTGTATCCCAAGAG 59.172 38.462 0.00 0.00 33.75 2.85
3757 7765 6.238759 GGTGATTGTATTTGTATCCCAAGAGC 60.239 42.308 0.00 0.00 33.75 4.09
3758 7766 6.318648 GTGATTGTATTTGTATCCCAAGAGCA 59.681 38.462 0.00 0.00 33.75 4.26
3759 7767 6.543465 TGATTGTATTTGTATCCCAAGAGCAG 59.457 38.462 0.00 0.00 33.75 4.24
3760 7768 5.692115 TGTATTTGTATCCCAAGAGCAGA 57.308 39.130 0.00 0.00 33.75 4.26
3761 7769 6.061022 TGTATTTGTATCCCAAGAGCAGAA 57.939 37.500 0.00 0.00 33.75 3.02
3762 7770 6.115446 TGTATTTGTATCCCAAGAGCAGAAG 58.885 40.000 0.00 0.00 33.75 2.85
3763 7771 3.634397 TTGTATCCCAAGAGCAGAAGG 57.366 47.619 0.00 0.00 0.00 3.46
3764 7772 2.551270 TGTATCCCAAGAGCAGAAGGT 58.449 47.619 0.00 0.00 0.00 3.50
3765 7773 3.719871 TGTATCCCAAGAGCAGAAGGTA 58.280 45.455 0.00 0.00 0.00 3.08
3766 7774 4.101114 TGTATCCCAAGAGCAGAAGGTAA 58.899 43.478 0.00 0.00 0.00 2.85
3767 7775 3.636153 ATCCCAAGAGCAGAAGGTAAC 57.364 47.619 0.00 0.00 0.00 2.50
3768 7776 1.275291 TCCCAAGAGCAGAAGGTAACG 59.725 52.381 0.00 0.00 46.39 3.18
3769 7777 1.002087 CCCAAGAGCAGAAGGTAACGT 59.998 52.381 0.00 0.00 46.39 3.99
3770 7778 2.232941 CCCAAGAGCAGAAGGTAACGTA 59.767 50.000 0.00 0.00 46.39 3.57
3771 7779 3.251571 CCAAGAGCAGAAGGTAACGTAC 58.748 50.000 0.00 0.00 46.39 3.67
3772 7780 3.305813 CCAAGAGCAGAAGGTAACGTACA 60.306 47.826 0.00 0.00 46.39 2.90
3773 7781 3.851976 AGAGCAGAAGGTAACGTACAG 57.148 47.619 0.00 0.00 46.39 2.74
3774 7782 3.418995 AGAGCAGAAGGTAACGTACAGA 58.581 45.455 0.00 0.00 46.39 3.41
3775 7783 3.825014 AGAGCAGAAGGTAACGTACAGAA 59.175 43.478 0.00 0.00 46.39 3.02
3776 7784 4.463186 AGAGCAGAAGGTAACGTACAGAAT 59.537 41.667 0.00 0.00 46.39 2.40
3777 7785 5.047235 AGAGCAGAAGGTAACGTACAGAATT 60.047 40.000 0.00 0.00 46.39 2.17
3778 7786 5.548406 AGCAGAAGGTAACGTACAGAATTT 58.452 37.500 0.00 0.00 46.39 1.82
3779 7787 5.995897 AGCAGAAGGTAACGTACAGAATTTT 59.004 36.000 0.00 0.00 46.39 1.82
3780 7788 6.485648 AGCAGAAGGTAACGTACAGAATTTTT 59.514 34.615 0.00 0.00 46.39 1.94
3799 7807 2.810439 TTTTCCAGGCCAAAACGATG 57.190 45.000 5.01 0.00 0.00 3.84
3800 7808 0.965439 TTTCCAGGCCAAAACGATGG 59.035 50.000 5.01 1.10 43.70 3.51
3801 7809 0.897863 TTCCAGGCCAAAACGATGGG 60.898 55.000 5.01 0.00 41.01 4.00
3802 7810 1.606313 CCAGGCCAAAACGATGGGT 60.606 57.895 5.01 0.00 41.01 4.51
3803 7811 1.586028 CAGGCCAAAACGATGGGTG 59.414 57.895 5.01 0.00 41.01 4.61
3804 7812 1.152830 AGGCCAAAACGATGGGTGT 59.847 52.632 5.01 0.00 41.01 4.16
3805 7813 0.469144 AGGCCAAAACGATGGGTGTT 60.469 50.000 5.01 0.00 41.01 3.32
3806 7814 0.038618 GGCCAAAACGATGGGTGTTC 60.039 55.000 0.00 0.00 41.01 3.18
3807 7815 0.958822 GCCAAAACGATGGGTGTTCT 59.041 50.000 8.34 0.00 41.01 3.01
3808 7816 1.339929 GCCAAAACGATGGGTGTTCTT 59.660 47.619 8.34 0.00 41.01 2.52
3809 7817 2.223947 GCCAAAACGATGGGTGTTCTTT 60.224 45.455 8.34 0.00 41.01 2.52
3810 7818 3.638484 CCAAAACGATGGGTGTTCTTTC 58.362 45.455 0.00 0.00 36.79 2.62
3811 7819 3.317993 CCAAAACGATGGGTGTTCTTTCT 59.682 43.478 0.00 0.00 36.79 2.52
3812 7820 4.202111 CCAAAACGATGGGTGTTCTTTCTT 60.202 41.667 0.00 0.00 36.79 2.52
3813 7821 4.568152 AAACGATGGGTGTTCTTTCTTG 57.432 40.909 0.00 0.00 0.00 3.02
3814 7822 3.485463 ACGATGGGTGTTCTTTCTTGA 57.515 42.857 0.00 0.00 0.00 3.02
3815 7823 4.021102 ACGATGGGTGTTCTTTCTTGAT 57.979 40.909 0.00 0.00 0.00 2.57
3816 7824 4.398319 ACGATGGGTGTTCTTTCTTGATT 58.602 39.130 0.00 0.00 0.00 2.57
3817 7825 4.827284 ACGATGGGTGTTCTTTCTTGATTT 59.173 37.500 0.00 0.00 0.00 2.17
3818 7826 5.156355 CGATGGGTGTTCTTTCTTGATTTG 58.844 41.667 0.00 0.00 0.00 2.32
3819 7827 4.320608 TGGGTGTTCTTTCTTGATTTGC 57.679 40.909 0.00 0.00 0.00 3.68
3820 7828 3.960102 TGGGTGTTCTTTCTTGATTTGCT 59.040 39.130 0.00 0.00 0.00 3.91
3821 7829 5.136828 TGGGTGTTCTTTCTTGATTTGCTA 58.863 37.500 0.00 0.00 0.00 3.49
3822 7830 5.774690 TGGGTGTTCTTTCTTGATTTGCTAT 59.225 36.000 0.00 0.00 0.00 2.97
3823 7831 6.071952 TGGGTGTTCTTTCTTGATTTGCTATC 60.072 38.462 0.00 0.00 0.00 2.08
3824 7832 6.151817 GGGTGTTCTTTCTTGATTTGCTATCT 59.848 38.462 0.00 0.00 0.00 1.98
3825 7833 7.025963 GGTGTTCTTTCTTGATTTGCTATCTG 58.974 38.462 0.00 0.00 0.00 2.90
3826 7834 7.094634 GGTGTTCTTTCTTGATTTGCTATCTGA 60.095 37.037 0.00 0.00 0.00 3.27
3827 7835 7.961827 GTGTTCTTTCTTGATTTGCTATCTGAG 59.038 37.037 0.00 0.00 0.00 3.35
3828 7836 7.879677 TGTTCTTTCTTGATTTGCTATCTGAGA 59.120 33.333 0.00 0.00 0.00 3.27
3829 7837 7.840342 TCTTTCTTGATTTGCTATCTGAGAC 57.160 36.000 0.00 0.00 0.00 3.36
3830 7838 6.533012 TCTTTCTTGATTTGCTATCTGAGACG 59.467 38.462 0.00 0.00 0.00 4.18
3831 7839 5.330455 TCTTGATTTGCTATCTGAGACGT 57.670 39.130 0.00 0.00 0.00 4.34
3832 7840 5.724328 TCTTGATTTGCTATCTGAGACGTT 58.276 37.500 0.00 0.00 0.00 3.99
3833 7841 5.807520 TCTTGATTTGCTATCTGAGACGTTC 59.192 40.000 0.00 0.00 0.00 3.95
3834 7842 4.433615 TGATTTGCTATCTGAGACGTTCC 58.566 43.478 0.00 0.00 0.00 3.62
3835 7843 4.160439 TGATTTGCTATCTGAGACGTTCCT 59.840 41.667 0.00 0.00 0.00 3.36
3836 7844 4.537135 TTTGCTATCTGAGACGTTCCTT 57.463 40.909 0.00 0.00 0.00 3.36
3837 7845 4.537135 TTGCTATCTGAGACGTTCCTTT 57.463 40.909 0.00 0.00 0.00 3.11
3838 7846 4.537135 TGCTATCTGAGACGTTCCTTTT 57.463 40.909 0.00 0.00 0.00 2.27
3839 7847 5.654603 TGCTATCTGAGACGTTCCTTTTA 57.345 39.130 0.00 0.00 0.00 1.52
3840 7848 6.032956 TGCTATCTGAGACGTTCCTTTTAA 57.967 37.500 0.00 0.00 0.00 1.52
3841 7849 6.460781 TGCTATCTGAGACGTTCCTTTTAAA 58.539 36.000 0.00 0.00 0.00 1.52
3842 7850 6.932400 TGCTATCTGAGACGTTCCTTTTAAAA 59.068 34.615 0.00 0.00 0.00 1.52
3843 7851 7.442969 TGCTATCTGAGACGTTCCTTTTAAAAA 59.557 33.333 1.66 0.00 0.00 1.94
3905 7916 9.507329 AACTATCACTTTTGCAGAGATTAGAAA 57.493 29.630 6.21 0.00 34.83 2.52
3913 7924 5.349061 TGCAGAGATTAGAAAGCATCTGA 57.651 39.130 4.29 0.00 39.30 3.27
3950 7961 1.064758 TGTTCTGCACCAAACAGGACT 60.065 47.619 4.00 0.00 43.05 3.85
4048 8062 1.416401 AGACAACTGGACACCACGAAT 59.584 47.619 0.00 0.00 0.00 3.34
4100 8114 2.161855 TGCTTTGGAACTGCATACCTG 58.838 47.619 0.00 0.00 0.00 4.00
4101 8115 2.224744 TGCTTTGGAACTGCATACCTGA 60.225 45.455 0.00 0.00 0.00 3.86
4103 8117 2.489938 TTGGAACTGCATACCTGACC 57.510 50.000 0.00 0.00 0.00 4.02
4104 8118 1.656587 TGGAACTGCATACCTGACCT 58.343 50.000 0.00 0.00 0.00 3.85
4105 8119 2.827755 TGGAACTGCATACCTGACCTA 58.172 47.619 0.00 0.00 0.00 3.08
4106 8120 2.500098 TGGAACTGCATACCTGACCTAC 59.500 50.000 0.00 0.00 0.00 3.18
4121 8135 0.546747 CCTACCACCCCTCTTCCACA 60.547 60.000 0.00 0.00 0.00 4.17
4141 8155 7.394016 TCCACACTAGATCAAATTTGCTCTAA 58.606 34.615 24.48 11.80 36.01 2.10
4153 8167 9.528018 TCAAATTTGCTCTAAAAACCTAAACAG 57.472 29.630 13.54 0.00 0.00 3.16
4209 8224 8.579863 CATAAAAATCTGGGGATTAACTGATCC 58.420 37.037 0.00 0.00 44.03 3.36
4229 8244 3.884774 ACGGCAGCCCAAACCTCA 61.885 61.111 5.63 0.00 0.00 3.86
4447 8466 5.784177 ACATACTCCACACTCTACAAACAG 58.216 41.667 0.00 0.00 0.00 3.16
4462 8482 4.481463 ACAAACAGAACACGAAACTTTGG 58.519 39.130 0.00 0.00 0.00 3.28
4501 8523 5.756833 ACAGTGTGTTAAGCTAACTACCAAC 59.243 40.000 0.00 0.00 39.38 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 3214 0.885196 GAGGCTTCTCTCACTGACGT 59.115 55.000 0.00 0.00 34.77 4.34
48 3216 2.560542 TCAAGAGGCTTCTCTCACTGAC 59.439 50.000 0.00 0.00 46.41 3.51
49 3217 2.824936 CTCAAGAGGCTTCTCTCACTGA 59.175 50.000 0.00 0.00 46.41 3.41
50 3218 2.824936 TCTCAAGAGGCTTCTCTCACTG 59.175 50.000 0.00 0.00 46.41 3.66
51 3219 3.168035 TCTCAAGAGGCTTCTCTCACT 57.832 47.619 0.00 0.00 46.41 3.41
52 3220 3.951775 TTCTCAAGAGGCTTCTCTCAC 57.048 47.619 0.00 0.00 46.41 3.51
53 3221 3.197333 CCATTCTCAAGAGGCTTCTCTCA 59.803 47.826 0.00 0.00 46.41 3.27
54 3222 3.197549 ACCATTCTCAAGAGGCTTCTCTC 59.802 47.826 0.00 0.00 46.41 3.20
100 3268 1.135094 ATCCTCGTCTCATGGCCATT 58.865 50.000 17.92 0.00 0.00 3.16
116 3284 2.674747 GCTATAGCTCTGCTCTGCATCC 60.675 54.545 17.75 0.00 40.44 3.51
140 3308 4.989279 ATGCTAAGGTGTTTTGCTATGG 57.011 40.909 0.00 0.00 38.20 2.74
163 3331 0.039708 GGCCGGCTACATACGAGTAC 60.040 60.000 28.56 0.00 0.00 2.73
164 3332 0.466007 TGGCCGGCTACATACGAGTA 60.466 55.000 28.56 0.00 0.00 2.59
165 3333 1.324740 TTGGCCGGCTACATACGAGT 61.325 55.000 28.56 0.00 0.00 4.18
166 3334 0.179094 TTTGGCCGGCTACATACGAG 60.179 55.000 28.56 0.00 0.00 4.18
167 3335 0.460635 GTTTGGCCGGCTACATACGA 60.461 55.000 28.56 5.00 0.00 3.43
168 3336 1.758319 CGTTTGGCCGGCTACATACG 61.758 60.000 28.56 26.32 36.17 3.06
210 3391 3.691342 TGGGAACTCTCGCGGGTG 61.691 66.667 5.57 6.07 37.33 4.61
211 3392 3.692406 GTGGGAACTCTCGCGGGT 61.692 66.667 5.57 0.00 37.33 5.28
212 3393 4.452733 GGTGGGAACTCTCGCGGG 62.453 72.222 6.13 1.01 37.33 6.13
213 3394 4.452733 GGGTGGGAACTCTCGCGG 62.453 72.222 6.13 0.00 37.33 6.46
214 3395 4.796231 CGGGTGGGAACTCTCGCG 62.796 72.222 0.00 0.00 41.31 5.87
265 3446 3.211865 TGATGATGATGGAAGAAGCTGC 58.788 45.455 0.00 0.00 0.00 5.25
268 3449 4.653868 AGGATGATGATGATGGAAGAAGC 58.346 43.478 0.00 0.00 0.00 3.86
269 3450 5.866207 TGAGGATGATGATGATGGAAGAAG 58.134 41.667 0.00 0.00 0.00 2.85
276 3457 6.365518 CGAGTACTTTGAGGATGATGATGATG 59.634 42.308 0.00 0.00 0.00 3.07
277 3458 6.041409 ACGAGTACTTTGAGGATGATGATGAT 59.959 38.462 0.00 0.00 0.00 2.45
278 3459 5.360999 ACGAGTACTTTGAGGATGATGATGA 59.639 40.000 0.00 0.00 0.00 2.92
323 3505 8.715998 CGAATACATTTAGCTAGCATTTGAGAT 58.284 33.333 18.83 0.00 0.00 2.75
342 3530 3.585862 GAGCAGTTGAGGAACGAATACA 58.414 45.455 0.00 0.00 37.15 2.29
345 3533 1.673033 CGGAGCAGTTGAGGAACGAAT 60.673 52.381 0.00 0.00 37.15 3.34
346 3534 0.319555 CGGAGCAGTTGAGGAACGAA 60.320 55.000 0.00 0.00 37.15 3.85
347 3535 1.289066 CGGAGCAGTTGAGGAACGA 59.711 57.895 0.00 0.00 37.15 3.85
359 3547 0.179094 AACGTCAGTTCAACGGAGCA 60.179 50.000 0.00 0.00 44.21 4.26
414 3602 4.725790 GCTGGTAGCATTTCTTTTCCAT 57.274 40.909 0.00 0.00 41.89 3.41
431 3623 3.758554 ACCTGCTACTATTGTTTTGCTGG 59.241 43.478 16.50 16.50 38.85 4.85
443 3635 4.018779 AGCCAATTTTACCACCTGCTACTA 60.019 41.667 0.00 0.00 0.00 1.82
461 3656 1.522668 GTGATGCACACTGTAGCCAA 58.477 50.000 10.87 0.00 45.13 4.52
507 3702 4.220821 CGGCCAGTACTATGACAAGGATAT 59.779 45.833 2.24 0.00 0.00 1.63
509 3704 2.365617 CGGCCAGTACTATGACAAGGAT 59.634 50.000 2.24 0.00 0.00 3.24
512 3707 1.480954 ACCGGCCAGTACTATGACAAG 59.519 52.381 0.00 0.00 0.00 3.16
514 3709 1.206132 CAACCGGCCAGTACTATGACA 59.794 52.381 0.00 0.00 0.00 3.58
515 3710 1.206371 ACAACCGGCCAGTACTATGAC 59.794 52.381 0.00 0.00 0.00 3.06
516 3711 1.563924 ACAACCGGCCAGTACTATGA 58.436 50.000 0.00 0.00 0.00 2.15
519 3714 1.921982 TGTACAACCGGCCAGTACTA 58.078 50.000 23.63 12.91 39.02 1.82
521 3716 2.965572 TATGTACAACCGGCCAGTAC 57.034 50.000 19.22 19.22 38.79 2.73
572 3770 5.946972 ACTGTAGCTCATGTAGTACTTGTCT 59.053 40.000 14.03 13.79 0.00 3.41
573 3771 6.197364 ACTGTAGCTCATGTAGTACTTGTC 57.803 41.667 14.03 8.71 0.00 3.18
574 3772 7.883391 ATACTGTAGCTCATGTAGTACTTGT 57.117 36.000 14.03 0.93 0.00 3.16
575 3773 9.058174 AGTATACTGTAGCTCATGTAGTACTTG 57.942 37.037 4.10 9.39 0.00 3.16
576 3774 9.629878 AAGTATACTGTAGCTCATGTAGTACTT 57.370 33.333 6.06 5.93 0.00 2.24
577 3775 9.058174 CAAGTATACTGTAGCTCATGTAGTACT 57.942 37.037 6.06 0.00 0.00 2.73
578 3776 7.804129 GCAAGTATACTGTAGCTCATGTAGTAC 59.196 40.741 6.06 0.00 0.00 2.73
579 3777 7.501225 TGCAAGTATACTGTAGCTCATGTAGTA 59.499 37.037 19.64 0.00 0.00 1.82
580 3778 6.321435 TGCAAGTATACTGTAGCTCATGTAGT 59.679 38.462 19.64 0.00 0.00 2.73
581 3779 6.638873 GTGCAAGTATACTGTAGCTCATGTAG 59.361 42.308 19.64 0.00 0.00 2.74
582 3780 6.096282 TGTGCAAGTATACTGTAGCTCATGTA 59.904 38.462 19.64 5.54 0.00 2.29
583 3781 5.105351 TGTGCAAGTATACTGTAGCTCATGT 60.105 40.000 19.64 0.00 0.00 3.21
584 3782 5.351458 TGTGCAAGTATACTGTAGCTCATG 58.649 41.667 19.64 8.89 0.00 3.07
585 3783 5.360999 TCTGTGCAAGTATACTGTAGCTCAT 59.639 40.000 20.56 0.00 0.00 2.90
586 3784 4.705023 TCTGTGCAAGTATACTGTAGCTCA 59.295 41.667 19.64 19.70 0.00 4.26
587 3785 5.038033 GTCTGTGCAAGTATACTGTAGCTC 58.962 45.833 19.64 17.27 0.00 4.09
588 3786 4.462834 TGTCTGTGCAAGTATACTGTAGCT 59.537 41.667 19.64 0.00 0.00 3.32
589 3787 4.744570 TGTCTGTGCAAGTATACTGTAGC 58.255 43.478 6.06 11.61 0.00 3.58
590 3788 6.877556 CTTGTCTGTGCAAGTATACTGTAG 57.122 41.667 6.06 1.11 40.52 2.74
601 3799 5.208463 TCATGTAGTACTTGTCTGTGCAA 57.792 39.130 14.03 0.00 0.00 4.08
602 3800 4.809673 CTCATGTAGTACTTGTCTGTGCA 58.190 43.478 14.03 0.00 0.00 4.57
603 3801 3.614616 GCTCATGTAGTACTTGTCTGTGC 59.385 47.826 14.03 3.53 0.00 4.57
604 3802 5.065704 AGCTCATGTAGTACTTGTCTGTG 57.934 43.478 14.03 0.00 0.00 3.66
605 3803 6.181190 TCTAGCTCATGTAGTACTTGTCTGT 58.819 40.000 14.03 3.45 0.00 3.41
606 3804 6.317642 ACTCTAGCTCATGTAGTACTTGTCTG 59.682 42.308 14.03 8.36 0.00 3.51
609 3807 5.591067 GGACTCTAGCTCATGTAGTACTTGT 59.409 44.000 14.03 0.93 0.00 3.16
614 3812 4.882427 GTGTGGACTCTAGCTCATGTAGTA 59.118 45.833 0.00 0.00 0.00 1.82
616 3814 3.242903 CGTGTGGACTCTAGCTCATGTAG 60.243 52.174 0.00 0.00 0.00 2.74
621 3819 1.883732 GCGTGTGGACTCTAGCTCA 59.116 57.895 0.00 0.00 0.00 4.26
736 3938 1.899534 GTGTGCCGGCTTGGGTTAA 60.900 57.895 29.70 0.07 38.63 2.01
777 3979 5.528690 CGTTGATGATAGGTTGATGGTGATT 59.471 40.000 0.00 0.00 0.00 2.57
778 3980 5.059161 CGTTGATGATAGGTTGATGGTGAT 58.941 41.667 0.00 0.00 0.00 3.06
783 3985 4.271049 GGTGACGTTGATGATAGGTTGATG 59.729 45.833 0.00 0.00 0.00 3.07
784 3986 4.442706 GGTGACGTTGATGATAGGTTGAT 58.557 43.478 0.00 0.00 0.00 2.57
785 3987 3.857052 GGTGACGTTGATGATAGGTTGA 58.143 45.455 0.00 0.00 0.00 3.18
875 4077 2.327343 GGGCGGGTGTAAACGGAAC 61.327 63.158 0.00 0.00 0.00 3.62
1036 4244 2.638480 TCGGGAATGGAATGGATGAC 57.362 50.000 0.00 0.00 0.00 3.06
1044 4252 1.144913 GAATGGGGATCGGGAATGGAA 59.855 52.381 0.00 0.00 0.00 3.53
1049 4257 0.550914 CTTGGAATGGGGATCGGGAA 59.449 55.000 0.00 0.00 0.00 3.97
1255 4492 2.036256 CTTGCCCTTCCTGGTGGG 59.964 66.667 18.61 18.61 46.00 4.61
1262 4499 1.002087 TCGACTTCTTCTTGCCCTTCC 59.998 52.381 0.00 0.00 0.00 3.46
1266 4503 0.729690 GCATCGACTTCTTCTTGCCC 59.270 55.000 0.00 0.00 0.00 5.36
1267 4504 0.371645 CGCATCGACTTCTTCTTGCC 59.628 55.000 0.00 0.00 30.81 4.52
1268 4505 0.371645 CCGCATCGACTTCTTCTTGC 59.628 55.000 0.00 0.00 0.00 4.01
1705 4942 1.061411 CGTGCGTGAATGGATGCTG 59.939 57.895 0.00 0.00 0.00 4.41
1706 4943 2.753966 GCGTGCGTGAATGGATGCT 61.754 57.895 1.38 0.00 38.93 3.79
1708 4945 1.226101 GTGCGTGCGTGAATGGATG 60.226 57.895 0.00 0.00 0.00 3.51
1710 4947 3.047280 GGTGCGTGCGTGAATGGA 61.047 61.111 0.00 0.00 0.00 3.41
1711 4948 3.353029 TGGTGCGTGCGTGAATGG 61.353 61.111 0.00 0.00 0.00 3.16
1718 4955 1.725625 GAATTGTGTGGTGCGTGCG 60.726 57.895 0.00 0.00 0.00 5.34
1719 4956 0.030638 AAGAATTGTGTGGTGCGTGC 59.969 50.000 0.00 0.00 0.00 5.34
1720 4957 1.660052 CGAAGAATTGTGTGGTGCGTG 60.660 52.381 0.00 0.00 0.00 5.34
1722 4959 0.865111 TCGAAGAATTGTGTGGTGCG 59.135 50.000 0.00 0.00 0.00 5.34
1723 4960 2.483877 TCATCGAAGAATTGTGTGGTGC 59.516 45.455 0.00 0.00 43.58 5.01
1724 4961 4.952262 ATCATCGAAGAATTGTGTGGTG 57.048 40.909 0.00 0.00 43.58 4.17
1725 4962 5.003160 TCAATCATCGAAGAATTGTGTGGT 58.997 37.500 13.93 0.00 43.58 4.16
1727 4964 6.685828 GTGATCAATCATCGAAGAATTGTGTG 59.314 38.462 0.00 1.86 43.58 3.82
1728 4965 6.456047 CGTGATCAATCATCGAAGAATTGTGT 60.456 38.462 0.00 7.43 43.58 3.72
1729 4966 5.900242 CGTGATCAATCATCGAAGAATTGTG 59.100 40.000 0.00 3.74 43.58 3.33
1730 4967 5.503031 GCGTGATCAATCATCGAAGAATTGT 60.503 40.000 0.00 5.64 43.58 2.71
1731 4968 4.902448 GCGTGATCAATCATCGAAGAATTG 59.098 41.667 0.00 3.15 43.58 2.32
1889 5150 0.772124 TTGGAGGCCTTGAAGTCCCT 60.772 55.000 6.77 1.82 0.00 4.20
2043 5700 6.148315 AGACGGTCGTCATATCAAATCGTATA 59.852 38.462 22.81 0.00 46.76 1.47
2115 5772 0.461548 CAGAGATCGGCCAACTAGCA 59.538 55.000 2.24 0.00 0.00 3.49
2119 5776 1.513158 CGACAGAGATCGGCCAACT 59.487 57.895 2.24 0.00 38.47 3.16
2215 5872 8.473219 AGTGGCTAACAGTAATTAAGTACTACC 58.527 37.037 14.74 11.56 32.92 3.18
2218 5875 9.866798 GTTAGTGGCTAACAGTAATTAAGTACT 57.133 33.333 9.72 9.72 44.46 2.73
2307 5975 0.667792 GATTCCGTCCGAGGCATAGC 60.668 60.000 0.00 0.00 0.00 2.97
2323 5991 3.698040 GGGACATTGATGCTTGTCTGATT 59.302 43.478 3.39 0.00 41.55 2.57
2354 6022 0.896226 GCACGTTTCCTACCTCCTCT 59.104 55.000 0.00 0.00 0.00 3.69
2463 6360 0.543749 GACTATGTTGGCCAGCTCCT 59.456 55.000 21.11 8.00 0.00 3.69
2469 6374 2.290008 ACATGTTCGACTATGTTGGCCA 60.290 45.455 0.00 0.00 34.00 5.36
2484 6389 6.478512 AGGTGTGGTTGATTTAAACATGTT 57.521 33.333 4.92 4.92 38.47 2.71
2487 6392 6.015772 GGTGTAGGTGTGGTTGATTTAAACAT 60.016 38.462 0.00 0.00 38.47 2.71
2491 6396 5.313280 AGGTGTAGGTGTGGTTGATTTAA 57.687 39.130 0.00 0.00 0.00 1.52
2533 6438 2.714793 AGTAAAGTGGCTGGGTTAGGTT 59.285 45.455 0.00 0.00 0.00 3.50
2674 6588 4.505217 CCGGTCGGTCGACGTACG 62.505 72.222 15.01 15.01 45.41 3.67
2684 6598 0.179134 GAGTCAGAATCACCGGTCGG 60.179 60.000 2.59 7.97 42.03 4.79
2703 6617 4.453478 CCTGCAATACATAGGCACATACAG 59.547 45.833 0.00 0.00 33.34 2.74
3070 7028 3.041351 TGCAGGCAGTTGTACGCG 61.041 61.111 3.53 3.53 0.00 6.01
3240 7198 2.492090 CTTCCTCGCCGTCCTCTG 59.508 66.667 0.00 0.00 0.00 3.35
3241 7199 3.453679 GCTTCCTCGCCGTCCTCT 61.454 66.667 0.00 0.00 0.00 3.69
3286 7256 2.048603 GCATTTCTTCCTGGCCGCT 61.049 57.895 0.00 0.00 0.00 5.52
3340 7310 2.152699 CACGGAGCTCGCGTACTTG 61.153 63.158 23.66 12.09 43.89 3.16
3355 7325 2.125512 CTCTCTTTCCCCGCCACG 60.126 66.667 0.00 0.00 0.00 4.94
3387 7360 2.422231 CCTCTGTCCCTCCTCTGCG 61.422 68.421 0.00 0.00 0.00 5.18
3394 7367 3.775654 CACGCCCCTCTGTCCCTC 61.776 72.222 0.00 0.00 0.00 4.30
3428 7401 3.011949 ACAAACAAAAATCTCGCGCAT 57.988 38.095 8.75 0.00 0.00 4.73
3431 7404 5.004345 ACTTTGAACAAACAAAAATCTCGCG 59.996 36.000 0.00 0.00 38.90 5.87
3433 7406 7.276953 ACACTTTGAACAAACAAAAATCTCG 57.723 32.000 0.00 0.00 38.90 4.04
3434 7407 9.134734 TGTACACTTTGAACAAACAAAAATCTC 57.865 29.630 0.00 0.00 38.90 2.75
3435 7408 9.651913 ATGTACACTTTGAACAAACAAAAATCT 57.348 25.926 0.00 0.00 38.90 2.40
3476 7470 5.801350 ATCAACCAACAGATTACACATCG 57.199 39.130 0.00 0.00 0.00 3.84
3536 7532 4.819630 TGTACTAACACCTTTTGCTCTTGG 59.180 41.667 0.00 0.00 0.00 3.61
3565 7563 1.036707 TCGTTTGGGCCTGGAAAAAG 58.963 50.000 4.53 0.00 0.00 2.27
3586 7584 4.083802 CGTCTCAATCAAGAAAGAACACCC 60.084 45.833 0.00 0.00 0.00 4.61
3618 7624 3.795101 CCGCTGCAGATGATTCATTTTTC 59.205 43.478 20.43 0.00 0.00 2.29
3624 7632 1.944709 CAATCCGCTGCAGATGATTCA 59.055 47.619 20.43 0.00 0.00 2.57
3639 7647 3.434940 AGTCCCTGTACCAAACAATCC 57.565 47.619 0.00 0.00 37.74 3.01
3661 7669 9.562408 TTATGTACACTTTGAACAATCCTGTTA 57.438 29.630 0.00 0.00 45.98 2.41
3663 7671 8.635765 ATTATGTACACTTTGAACAATCCTGT 57.364 30.769 0.00 0.00 37.39 4.00
3664 7672 9.345517 CAATTATGTACACTTTGAACAATCCTG 57.654 33.333 0.00 0.00 0.00 3.86
3665 7673 9.295825 TCAATTATGTACACTTTGAACAATCCT 57.704 29.630 12.20 0.00 0.00 3.24
3666 7674 9.906660 TTCAATTATGTACACTTTGAACAATCC 57.093 29.630 18.51 0.00 32.88 3.01
3672 7680 9.959749 GGTTCTTTCAATTATGTACACTTTGAA 57.040 29.630 18.51 18.51 35.23 2.69
3673 7681 9.126151 TGGTTCTTTCAATTATGTACACTTTGA 57.874 29.630 0.00 5.31 0.00 2.69
3674 7682 9.398170 CTGGTTCTTTCAATTATGTACACTTTG 57.602 33.333 0.00 2.81 0.00 2.77
3675 7683 8.576442 CCTGGTTCTTTCAATTATGTACACTTT 58.424 33.333 0.00 0.00 0.00 2.66
3676 7684 7.942341 TCCTGGTTCTTTCAATTATGTACACTT 59.058 33.333 0.00 0.00 0.00 3.16
3677 7685 7.458397 TCCTGGTTCTTTCAATTATGTACACT 58.542 34.615 0.00 0.00 0.00 3.55
3678 7686 7.681939 TCCTGGTTCTTTCAATTATGTACAC 57.318 36.000 0.00 0.00 0.00 2.90
3679 7687 7.888021 ACATCCTGGTTCTTTCAATTATGTACA 59.112 33.333 0.00 0.00 0.00 2.90
3680 7688 8.184192 CACATCCTGGTTCTTTCAATTATGTAC 58.816 37.037 0.00 0.00 0.00 2.90
3681 7689 7.888021 ACACATCCTGGTTCTTTCAATTATGTA 59.112 33.333 0.00 0.00 0.00 2.29
3682 7690 6.721208 ACACATCCTGGTTCTTTCAATTATGT 59.279 34.615 0.00 0.00 0.00 2.29
3683 7691 7.161773 ACACATCCTGGTTCTTTCAATTATG 57.838 36.000 0.00 0.00 0.00 1.90
3684 7692 8.877864 TTACACATCCTGGTTCTTTCAATTAT 57.122 30.769 0.00 0.00 0.00 1.28
3685 7693 8.877864 ATTACACATCCTGGTTCTTTCAATTA 57.122 30.769 0.00 0.00 0.00 1.40
3686 7694 7.671398 AGATTACACATCCTGGTTCTTTCAATT 59.329 33.333 0.00 0.00 0.00 2.32
3687 7695 7.121759 CAGATTACACATCCTGGTTCTTTCAAT 59.878 37.037 0.00 0.00 0.00 2.57
3688 7696 6.430925 CAGATTACACATCCTGGTTCTTTCAA 59.569 38.462 0.00 0.00 0.00 2.69
3689 7697 5.939883 CAGATTACACATCCTGGTTCTTTCA 59.060 40.000 0.00 0.00 0.00 2.69
3690 7698 5.355350 CCAGATTACACATCCTGGTTCTTTC 59.645 44.000 0.00 0.00 40.84 2.62
3691 7699 5.256474 CCAGATTACACATCCTGGTTCTTT 58.744 41.667 0.00 0.00 40.84 2.52
3692 7700 4.848357 CCAGATTACACATCCTGGTTCTT 58.152 43.478 0.00 0.00 40.84 2.52
3693 7701 4.494091 CCAGATTACACATCCTGGTTCT 57.506 45.455 0.00 0.00 40.84 3.01
3698 7706 3.634397 ACCACCAGATTACACATCCTG 57.366 47.619 0.00 0.00 0.00 3.86
3699 7707 3.873801 GCAACCACCAGATTACACATCCT 60.874 47.826 0.00 0.00 0.00 3.24
3700 7708 2.423538 GCAACCACCAGATTACACATCC 59.576 50.000 0.00 0.00 0.00 3.51
3701 7709 3.347216 AGCAACCACCAGATTACACATC 58.653 45.455 0.00 0.00 0.00 3.06
3702 7710 3.439857 AGCAACCACCAGATTACACAT 57.560 42.857 0.00 0.00 0.00 3.21
3703 7711 2.949177 AGCAACCACCAGATTACACA 57.051 45.000 0.00 0.00 0.00 3.72
3704 7712 3.412386 AGAAGCAACCACCAGATTACAC 58.588 45.455 0.00 0.00 0.00 2.90
3705 7713 3.788227 AGAAGCAACCACCAGATTACA 57.212 42.857 0.00 0.00 0.00 2.41
3706 7714 5.241728 AGAAAAGAAGCAACCACCAGATTAC 59.758 40.000 0.00 0.00 0.00 1.89
3707 7715 5.385198 AGAAAAGAAGCAACCACCAGATTA 58.615 37.500 0.00 0.00 0.00 1.75
3708 7716 4.218312 AGAAAAGAAGCAACCACCAGATT 58.782 39.130 0.00 0.00 0.00 2.40
3709 7717 3.837355 AGAAAAGAAGCAACCACCAGAT 58.163 40.909 0.00 0.00 0.00 2.90
3710 7718 3.297134 AGAAAAGAAGCAACCACCAGA 57.703 42.857 0.00 0.00 0.00 3.86
3711 7719 3.491447 CCAAGAAAAGAAGCAACCACCAG 60.491 47.826 0.00 0.00 0.00 4.00
3712 7720 2.430332 CCAAGAAAAGAAGCAACCACCA 59.570 45.455 0.00 0.00 0.00 4.17
3713 7721 2.430694 ACCAAGAAAAGAAGCAACCACC 59.569 45.455 0.00 0.00 0.00 4.61
3714 7722 3.130340 TCACCAAGAAAAGAAGCAACCAC 59.870 43.478 0.00 0.00 0.00 4.16
3715 7723 3.360867 TCACCAAGAAAAGAAGCAACCA 58.639 40.909 0.00 0.00 0.00 3.67
3716 7724 4.590850 ATCACCAAGAAAAGAAGCAACC 57.409 40.909 0.00 0.00 0.00 3.77
3717 7725 5.351458 ACAATCACCAAGAAAAGAAGCAAC 58.649 37.500 0.00 0.00 0.00 4.17
3718 7726 5.596836 ACAATCACCAAGAAAAGAAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
3719 7727 6.899393 ATACAATCACCAAGAAAAGAAGCA 57.101 33.333 0.00 0.00 0.00 3.91
3720 7728 7.653311 ACAAATACAATCACCAAGAAAAGAAGC 59.347 33.333 0.00 0.00 0.00 3.86
3724 7732 9.573133 GGATACAAATACAATCACCAAGAAAAG 57.427 33.333 0.00 0.00 0.00 2.27
3725 7733 8.527810 GGGATACAAATACAATCACCAAGAAAA 58.472 33.333 0.00 0.00 39.74 2.29
3726 7734 7.671819 TGGGATACAAATACAATCACCAAGAAA 59.328 33.333 0.00 0.00 39.74 2.52
3727 7735 7.178573 TGGGATACAAATACAATCACCAAGAA 58.821 34.615 0.00 0.00 39.74 2.52
3728 7736 6.726379 TGGGATACAAATACAATCACCAAGA 58.274 36.000 0.00 0.00 39.74 3.02
3729 7737 7.339212 TCTTGGGATACAAATACAATCACCAAG 59.661 37.037 17.03 17.03 42.26 3.61
3730 7738 7.178573 TCTTGGGATACAAATACAATCACCAA 58.821 34.615 0.00 0.00 38.91 3.67
3731 7739 6.726379 TCTTGGGATACAAATACAATCACCA 58.274 36.000 0.00 0.00 38.91 4.17
3732 7740 6.238759 GCTCTTGGGATACAAATACAATCACC 60.239 42.308 0.00 0.00 38.91 4.02
3733 7741 6.318648 TGCTCTTGGGATACAAATACAATCAC 59.681 38.462 0.00 0.00 38.91 3.06
3734 7742 6.422333 TGCTCTTGGGATACAAATACAATCA 58.578 36.000 0.00 0.00 38.91 2.57
3735 7743 6.767902 TCTGCTCTTGGGATACAAATACAATC 59.232 38.462 0.00 0.00 38.91 2.67
3736 7744 6.662755 TCTGCTCTTGGGATACAAATACAAT 58.337 36.000 0.00 0.00 38.91 2.71
3737 7745 6.061022 TCTGCTCTTGGGATACAAATACAA 57.939 37.500 0.00 0.00 38.91 2.41
3738 7746 5.692115 TCTGCTCTTGGGATACAAATACA 57.308 39.130 0.00 0.00 38.91 2.29
3739 7747 5.529060 CCTTCTGCTCTTGGGATACAAATAC 59.471 44.000 0.00 0.00 38.91 1.89
3740 7748 5.191722 ACCTTCTGCTCTTGGGATACAAATA 59.808 40.000 0.00 0.00 38.91 1.40
3741 7749 4.018050 ACCTTCTGCTCTTGGGATACAAAT 60.018 41.667 0.00 0.00 38.91 2.32
3742 7750 3.330701 ACCTTCTGCTCTTGGGATACAAA 59.669 43.478 0.00 0.00 38.91 2.83
3743 7751 2.912956 ACCTTCTGCTCTTGGGATACAA 59.087 45.455 0.00 0.00 37.55 2.41
3744 7752 2.551270 ACCTTCTGCTCTTGGGATACA 58.449 47.619 0.00 0.00 39.74 2.29
3745 7753 4.443621 GTTACCTTCTGCTCTTGGGATAC 58.556 47.826 0.00 0.00 0.00 2.24
3746 7754 3.132289 CGTTACCTTCTGCTCTTGGGATA 59.868 47.826 0.00 0.00 0.00 2.59
3747 7755 2.093447 CGTTACCTTCTGCTCTTGGGAT 60.093 50.000 0.00 0.00 0.00 3.85
3748 7756 1.275291 CGTTACCTTCTGCTCTTGGGA 59.725 52.381 0.00 0.00 0.00 4.37
3749 7757 1.002087 ACGTTACCTTCTGCTCTTGGG 59.998 52.381 0.00 0.00 0.00 4.12
3750 7758 2.457366 ACGTTACCTTCTGCTCTTGG 57.543 50.000 0.00 0.00 0.00 3.61
3751 7759 3.909430 TGTACGTTACCTTCTGCTCTTG 58.091 45.455 0.00 0.00 0.00 3.02
3752 7760 3.825014 TCTGTACGTTACCTTCTGCTCTT 59.175 43.478 0.00 0.00 0.00 2.85
3753 7761 3.418995 TCTGTACGTTACCTTCTGCTCT 58.581 45.455 0.00 0.00 0.00 4.09
3754 7762 3.844577 TCTGTACGTTACCTTCTGCTC 57.155 47.619 0.00 0.00 0.00 4.26
3755 7763 4.803098 ATTCTGTACGTTACCTTCTGCT 57.197 40.909 0.00 0.00 0.00 4.24
3756 7764 5.857822 AAATTCTGTACGTTACCTTCTGC 57.142 39.130 0.00 0.00 0.00 4.26
3779 7787 2.224161 CCATCGTTTTGGCCTGGAAAAA 60.224 45.455 3.32 0.00 0.00 1.94
3780 7788 1.342819 CCATCGTTTTGGCCTGGAAAA 59.657 47.619 3.32 0.00 0.00 2.29
3781 7789 0.965439 CCATCGTTTTGGCCTGGAAA 59.035 50.000 3.32 0.00 0.00 3.13
3782 7790 0.897863 CCCATCGTTTTGGCCTGGAA 60.898 55.000 3.32 0.00 35.29 3.53
3783 7791 1.304052 CCCATCGTTTTGGCCTGGA 60.304 57.895 3.32 0.00 35.29 3.86
3784 7792 1.606313 ACCCATCGTTTTGGCCTGG 60.606 57.895 3.32 0.11 35.29 4.45
3785 7793 1.178534 ACACCCATCGTTTTGGCCTG 61.179 55.000 3.32 0.00 35.29 4.85
3786 7794 0.469144 AACACCCATCGTTTTGGCCT 60.469 50.000 3.32 0.00 35.29 5.19
3787 7795 0.038618 GAACACCCATCGTTTTGGCC 60.039 55.000 0.00 0.00 35.29 5.36
3788 7796 0.958822 AGAACACCCATCGTTTTGGC 59.041 50.000 0.00 0.00 35.29 4.52
3789 7797 3.317993 AGAAAGAACACCCATCGTTTTGG 59.682 43.478 0.00 0.00 36.46 3.28
3790 7798 4.568152 AGAAAGAACACCCATCGTTTTG 57.432 40.909 0.00 0.00 0.00 2.44
3791 7799 4.642885 TCAAGAAAGAACACCCATCGTTTT 59.357 37.500 0.00 0.00 0.00 2.43
3792 7800 4.204012 TCAAGAAAGAACACCCATCGTTT 58.796 39.130 0.00 0.00 0.00 3.60
3793 7801 3.815809 TCAAGAAAGAACACCCATCGTT 58.184 40.909 0.00 0.00 0.00 3.85
3794 7802 3.485463 TCAAGAAAGAACACCCATCGT 57.515 42.857 0.00 0.00 0.00 3.73
3795 7803 5.156355 CAAATCAAGAAAGAACACCCATCG 58.844 41.667 0.00 0.00 0.00 3.84
3796 7804 4.925646 GCAAATCAAGAAAGAACACCCATC 59.074 41.667 0.00 0.00 0.00 3.51
3797 7805 4.590222 AGCAAATCAAGAAAGAACACCCAT 59.410 37.500 0.00 0.00 0.00 4.00
3798 7806 3.960102 AGCAAATCAAGAAAGAACACCCA 59.040 39.130 0.00 0.00 0.00 4.51
3799 7807 4.590850 AGCAAATCAAGAAAGAACACCC 57.409 40.909 0.00 0.00 0.00 4.61
3800 7808 7.025963 CAGATAGCAAATCAAGAAAGAACACC 58.974 38.462 2.37 0.00 0.00 4.16
3801 7809 7.810658 TCAGATAGCAAATCAAGAAAGAACAC 58.189 34.615 2.37 0.00 0.00 3.32
3802 7810 7.879677 TCTCAGATAGCAAATCAAGAAAGAACA 59.120 33.333 2.37 0.00 0.00 3.18
3803 7811 8.174422 GTCTCAGATAGCAAATCAAGAAAGAAC 58.826 37.037 2.37 0.00 0.00 3.01
3804 7812 7.063898 CGTCTCAGATAGCAAATCAAGAAAGAA 59.936 37.037 2.37 0.00 0.00 2.52
3805 7813 6.533012 CGTCTCAGATAGCAAATCAAGAAAGA 59.467 38.462 2.37 0.00 0.00 2.52
3806 7814 6.312426 ACGTCTCAGATAGCAAATCAAGAAAG 59.688 38.462 2.37 5.08 0.00 2.62
3807 7815 6.166279 ACGTCTCAGATAGCAAATCAAGAAA 58.834 36.000 2.37 0.00 0.00 2.52
3808 7816 5.724328 ACGTCTCAGATAGCAAATCAAGAA 58.276 37.500 2.37 0.00 0.00 2.52
3809 7817 5.330455 ACGTCTCAGATAGCAAATCAAGA 57.670 39.130 2.37 2.26 0.00 3.02
3810 7818 5.006165 GGAACGTCTCAGATAGCAAATCAAG 59.994 44.000 0.00 0.25 0.00 3.02
3811 7819 4.870426 GGAACGTCTCAGATAGCAAATCAA 59.130 41.667 0.00 0.00 0.00 2.57
3812 7820 4.160439 AGGAACGTCTCAGATAGCAAATCA 59.840 41.667 0.00 0.00 0.00 2.57
3813 7821 4.688021 AGGAACGTCTCAGATAGCAAATC 58.312 43.478 0.00 0.00 0.00 2.17
3814 7822 4.744795 AGGAACGTCTCAGATAGCAAAT 57.255 40.909 0.00 0.00 0.00 2.32
3815 7823 4.537135 AAGGAACGTCTCAGATAGCAAA 57.463 40.909 0.00 0.00 0.00 3.68
3816 7824 4.537135 AAAGGAACGTCTCAGATAGCAA 57.463 40.909 0.00 0.00 0.00 3.91
3817 7825 4.537135 AAAAGGAACGTCTCAGATAGCA 57.463 40.909 0.00 0.00 0.00 3.49
3818 7826 6.963049 TTTAAAAGGAACGTCTCAGATAGC 57.037 37.500 0.00 0.00 0.00 2.97
3840 7848 5.659079 TGGGAGTGGTTGAACTTGTATTTTT 59.341 36.000 0.00 0.00 0.00 1.94
3841 7849 5.205056 TGGGAGTGGTTGAACTTGTATTTT 58.795 37.500 0.00 0.00 0.00 1.82
3842 7850 4.798882 TGGGAGTGGTTGAACTTGTATTT 58.201 39.130 0.00 0.00 0.00 1.40
3843 7851 4.447138 TGGGAGTGGTTGAACTTGTATT 57.553 40.909 0.00 0.00 0.00 1.89
3844 7852 4.657814 ATGGGAGTGGTTGAACTTGTAT 57.342 40.909 0.00 0.00 0.00 2.29
3845 7853 4.564821 GCTATGGGAGTGGTTGAACTTGTA 60.565 45.833 0.00 0.00 0.00 2.41
3905 7916 1.405463 TCGCACTCGTAATCAGATGCT 59.595 47.619 0.00 0.00 36.96 3.79
3913 7924 3.994392 AGAACATGTTTCGCACTCGTAAT 59.006 39.130 13.36 0.00 36.96 1.89
3955 7966 5.337410 CCCAAAATTGATTACATCTGTGGCA 60.337 40.000 0.00 0.00 0.00 4.92
4100 8114 0.252558 TGGAAGAGGGGTGGTAGGTC 60.253 60.000 0.00 0.00 0.00 3.85
4101 8115 0.546988 GTGGAAGAGGGGTGGTAGGT 60.547 60.000 0.00 0.00 0.00 3.08
4103 8117 0.613777 GTGTGGAAGAGGGGTGGTAG 59.386 60.000 0.00 0.00 0.00 3.18
4104 8118 0.192566 AGTGTGGAAGAGGGGTGGTA 59.807 55.000 0.00 0.00 0.00 3.25
4105 8119 0.192566 TAGTGTGGAAGAGGGGTGGT 59.807 55.000 0.00 0.00 0.00 4.16
4106 8120 0.905357 CTAGTGTGGAAGAGGGGTGG 59.095 60.000 0.00 0.00 0.00 4.61
4141 8155 7.068226 AGCAATGTTGTACTCTGTTTAGGTTTT 59.932 33.333 0.00 0.00 0.00 2.43
4153 8167 2.749621 CCCCTTCAGCAATGTTGTACTC 59.250 50.000 0.00 0.00 0.00 2.59
4209 8224 3.365265 GGTTTGGGCTGCCGTGAG 61.365 66.667 13.40 0.00 0.00 3.51
4229 8244 5.339200 CCCACTCCCTGTGTAATAGAACAAT 60.339 44.000 0.00 0.00 44.81 2.71
4447 8466 3.548214 GCTCCTTCCAAAGTTTCGTGTTC 60.548 47.826 0.00 0.00 0.00 3.18
4462 8482 4.757149 ACACACTGTAGAAAATGCTCCTTC 59.243 41.667 0.00 0.00 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.