Multiple sequence alignment - TraesCS6B01G366500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G366500 chr6B 100.000 2434 0 0 1 2434 639158734 639156301 0.000000e+00 4495.0
1 TraesCS6B01G366500 chr6B 92.481 133 10 0 1673 1805 639156930 639156798 8.880000e-45 191.0
2 TraesCS6B01G366500 chr6B 92.481 133 10 0 1805 1937 639157062 639156930 8.880000e-45 191.0
3 TraesCS6B01G366500 chr6B 95.918 49 2 0 719 767 639157967 639157919 2.010000e-11 80.5
4 TraesCS6B01G366500 chr6B 95.918 49 2 0 768 816 639158016 639157968 2.010000e-11 80.5
5 TraesCS6B01G366500 chr6B 96.875 32 0 1 1879 1910 727283 727253 4.000000e-03 52.8
6 TraesCS6B01G366500 chr6D 94.928 1676 64 7 768 2434 423798253 423796590 0.000000e+00 2604.0
7 TraesCS6B01G366500 chr6D 84.889 814 49 26 7 767 423798995 423798203 0.000000e+00 754.0
8 TraesCS6B01G366500 chr6D 91.729 133 11 0 1805 1937 423797351 423797219 4.130000e-43 185.0
9 TraesCS6B01G366500 chr6D 90.977 133 12 0 1673 1805 423797219 423797087 1.920000e-41 180.0
10 TraesCS6B01G366500 chr6A 94.683 1674 64 7 768 2434 568507214 568505559 0.000000e+00 2575.0
11 TraesCS6B01G366500 chr6A 85.432 810 48 26 1 767 568507948 568507166 0.000000e+00 778.0
12 TraesCS6B01G366500 chr6A 92.481 133 10 0 1805 1937 568506319 568506187 8.880000e-45 191.0
13 TraesCS6B01G366500 chr6A 91.729 133 11 0 1673 1805 568506187 568506055 4.130000e-43 185.0
14 TraesCS6B01G366500 chr7A 78.049 451 80 14 1278 1712 4780378 4780825 1.430000e-67 267.0
15 TraesCS6B01G366500 chr5D 89.552 67 7 0 1878 1944 526428701 526428635 4.310000e-13 86.1
16 TraesCS6B01G366500 chr5D 89.552 67 7 0 1878 1944 526466015 526465949 4.310000e-13 86.1
17 TraesCS6B01G366500 chr5B 88.060 67 8 0 1878 1944 661883980 661883914 2.010000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G366500 chr6B 639156301 639158734 2433 True 1007.60 4495 95.35960 1 2434 5 chr6B.!!$R2 2433
1 TraesCS6B01G366500 chr6D 423796590 423798995 2405 True 930.75 2604 90.63075 7 2434 4 chr6D.!!$R1 2427
2 TraesCS6B01G366500 chr6A 568505559 568507948 2389 True 932.25 2575 91.08125 1 2434 4 chr6A.!!$R1 2433

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
383 440 0.040781 GCCTCGTCGACAGATCTAGC 60.041 60.0 17.16 10.16 0.0 3.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 1618 3.937814 AGCCAACTTACGATGTTCATCA 58.062 40.909 12.34 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.824109 CTACCATCAGCTCCGTGGAA 59.176 55.000 13.87 0.00 36.82 3.53
71 72 1.140852 CCAGTTGGTGAACTCACTCCA 59.859 52.381 9.60 0.00 45.73 3.86
72 73 2.487934 CAGTTGGTGAACTCACTCCAG 58.512 52.381 9.60 0.00 45.73 3.86
73 74 1.417890 AGTTGGTGAACTCACTCCAGG 59.582 52.381 9.60 0.00 45.73 4.45
74 75 1.141053 GTTGGTGAACTCACTCCAGGT 59.859 52.381 9.60 0.00 45.73 4.00
75 76 1.048601 TGGTGAACTCACTCCAGGTC 58.951 55.000 9.60 0.00 45.73 3.85
76 77 1.343069 GGTGAACTCACTCCAGGTCT 58.657 55.000 9.60 0.00 45.73 3.85
77 78 1.273886 GGTGAACTCACTCCAGGTCTC 59.726 57.143 9.60 0.00 45.73 3.36
78 79 1.273886 GTGAACTCACTCCAGGTCTCC 59.726 57.143 2.51 0.00 43.25 3.71
287 309 6.657541 GTGGTTAGGATGTTTTGGTAGAATCA 59.342 38.462 0.00 0.00 0.00 2.57
298 320 4.257267 TGGTAGAATCATCCGTATGCTG 57.743 45.455 0.00 0.00 32.76 4.41
299 321 3.641436 TGGTAGAATCATCCGTATGCTGT 59.359 43.478 0.00 0.00 32.76 4.40
317 339 0.601558 GTCCTGTGTCGCTGTCCTAA 59.398 55.000 0.00 0.00 0.00 2.69
330 381 2.039084 CTGTCCTAACCCTCTGTGCTTT 59.961 50.000 0.00 0.00 0.00 3.51
355 406 5.835280 CAGCTTGTTATCCCCTCCAAATAAT 59.165 40.000 0.00 0.00 0.00 1.28
383 440 0.040781 GCCTCGTCGACAGATCTAGC 60.041 60.000 17.16 10.16 0.00 3.42
416 473 6.084277 GGAACGATAGCAAACGAAAGAAAAT 58.916 36.000 0.00 0.00 42.67 1.82
427 484 6.959671 AACGAAAGAAAATTTGTTGCTTGA 57.040 29.167 0.00 0.00 35.94 3.02
442 500 4.313277 TGCTTGATCTGGAACGAGATAG 57.687 45.455 0.00 0.00 32.57 2.08
458 520 4.671377 GAGATAGGCTTGCTCGATCTATG 58.329 47.826 0.00 0.00 29.08 2.23
470 532 4.920340 GCTCGATCTATGTCACAGTAATGG 59.080 45.833 0.00 0.00 0.00 3.16
485 547 8.855110 TCACAGTAATGGTGTTCATGTTTTATT 58.145 29.630 0.00 0.00 37.52 1.40
533 595 3.006247 GTGAGGATCTGAGGCTTTGTTC 58.994 50.000 0.00 0.00 34.92 3.18
534 596 2.639347 TGAGGATCTGAGGCTTTGTTCA 59.361 45.455 0.00 0.00 34.92 3.18
639 720 5.066117 GGAGTTTCTTTTCTGTTTTCTCCGT 59.934 40.000 0.00 0.00 31.51 4.69
647 728 1.002468 CTGTTTTCTCCGTTGGCTGTG 60.002 52.381 0.00 0.00 0.00 3.66
727 809 5.539193 GGTATACATGCACCCTAGTTAGACT 59.461 44.000 5.01 0.00 0.00 3.24
728 810 5.793030 ATACATGCACCCTAGTTAGACTC 57.207 43.478 0.00 0.00 0.00 3.36
729 811 2.766828 ACATGCACCCTAGTTAGACTCC 59.233 50.000 0.00 0.00 0.00 3.85
730 812 1.471119 TGCACCCTAGTTAGACTCCG 58.529 55.000 0.00 0.00 0.00 4.63
731 813 1.272313 TGCACCCTAGTTAGACTCCGT 60.272 52.381 0.00 0.00 0.00 4.69
732 814 1.134560 GCACCCTAGTTAGACTCCGTG 59.865 57.143 0.00 0.00 0.00 4.94
733 815 1.749634 CACCCTAGTTAGACTCCGTGG 59.250 57.143 0.00 0.00 0.00 4.94
734 816 1.341778 ACCCTAGTTAGACTCCGTGGG 60.342 57.143 0.00 0.00 39.26 4.61
735 817 1.341778 CCCTAGTTAGACTCCGTGGGT 60.342 57.143 0.00 0.00 0.00 4.51
736 818 2.454538 CCTAGTTAGACTCCGTGGGTT 58.545 52.381 0.00 0.00 0.00 4.11
737 819 2.426381 CCTAGTTAGACTCCGTGGGTTC 59.574 54.545 0.00 0.00 0.00 3.62
738 820 2.005370 AGTTAGACTCCGTGGGTTCA 57.995 50.000 0.00 0.00 0.00 3.18
739 821 1.617357 AGTTAGACTCCGTGGGTTCAC 59.383 52.381 0.00 0.00 40.36 3.18
740 822 1.342174 GTTAGACTCCGTGGGTTCACA 59.658 52.381 0.00 0.00 43.79 3.58
741 823 1.933021 TAGACTCCGTGGGTTCACAT 58.067 50.000 0.00 0.00 43.79 3.21
742 824 0.608640 AGACTCCGTGGGTTCACATC 59.391 55.000 0.00 0.00 43.79 3.06
743 825 0.736325 GACTCCGTGGGTTCACATCG 60.736 60.000 0.00 0.00 43.79 3.84
744 826 1.183030 ACTCCGTGGGTTCACATCGA 61.183 55.000 0.00 0.00 43.79 3.59
745 827 0.458543 CTCCGTGGGTTCACATCGAG 60.459 60.000 0.00 0.00 43.79 4.04
746 828 1.447838 CCGTGGGTTCACATCGAGG 60.448 63.158 0.00 0.00 43.79 4.63
747 829 2.100631 CGTGGGTTCACATCGAGGC 61.101 63.158 0.00 0.00 43.79 4.70
748 830 2.100631 GTGGGTTCACATCGAGGCG 61.101 63.158 0.00 0.00 43.13 5.52
749 831 2.264794 GGGTTCACATCGAGGCGT 59.735 61.111 0.00 0.00 0.00 5.68
750 832 1.252215 TGGGTTCACATCGAGGCGTA 61.252 55.000 0.00 0.00 0.00 4.42
751 833 0.104304 GGGTTCACATCGAGGCGTAT 59.896 55.000 0.00 0.00 0.00 3.06
752 834 1.472728 GGGTTCACATCGAGGCGTATT 60.473 52.381 0.00 0.00 0.00 1.89
753 835 2.277084 GGTTCACATCGAGGCGTATTT 58.723 47.619 0.00 0.00 0.00 1.40
754 836 2.030457 GGTTCACATCGAGGCGTATTTG 59.970 50.000 0.00 0.00 0.00 2.32
755 837 2.927477 GTTCACATCGAGGCGTATTTGA 59.073 45.455 0.00 0.00 0.00 2.69
756 838 2.809446 TCACATCGAGGCGTATTTGAG 58.191 47.619 0.00 0.00 0.00 3.02
757 839 2.165641 TCACATCGAGGCGTATTTGAGT 59.834 45.455 0.00 0.00 0.00 3.41
758 840 2.282555 CACATCGAGGCGTATTTGAGTG 59.717 50.000 0.00 0.00 0.00 3.51
759 841 2.094182 ACATCGAGGCGTATTTGAGTGT 60.094 45.455 0.00 0.00 0.00 3.55
760 842 3.129813 ACATCGAGGCGTATTTGAGTGTA 59.870 43.478 0.00 0.00 0.00 2.90
761 843 4.202121 ACATCGAGGCGTATTTGAGTGTAT 60.202 41.667 0.00 0.00 0.00 2.29
762 844 3.961182 TCGAGGCGTATTTGAGTGTATC 58.039 45.455 0.00 0.00 0.00 2.24
763 845 3.050619 CGAGGCGTATTTGAGTGTATCC 58.949 50.000 0.00 0.00 0.00 2.59
764 846 3.490249 CGAGGCGTATTTGAGTGTATCCA 60.490 47.826 0.00 0.00 0.00 3.41
765 847 4.051922 GAGGCGTATTTGAGTGTATCCAG 58.948 47.826 0.00 0.00 0.00 3.86
766 848 3.131396 GGCGTATTTGAGTGTATCCAGG 58.869 50.000 0.00 0.00 0.00 4.45
767 849 3.431766 GGCGTATTTGAGTGTATCCAGGT 60.432 47.826 0.00 0.00 0.00 4.00
768 850 4.202182 GGCGTATTTGAGTGTATCCAGGTA 60.202 45.833 0.00 0.00 0.00 3.08
769 851 4.982916 GCGTATTTGAGTGTATCCAGGTAG 59.017 45.833 0.00 0.00 0.00 3.18
770 852 5.451520 GCGTATTTGAGTGTATCCAGGTAGT 60.452 44.000 0.00 0.00 0.00 2.73
771 853 6.570692 CGTATTTGAGTGTATCCAGGTAGTT 58.429 40.000 0.00 0.00 0.00 2.24
772 854 7.682741 GCGTATTTGAGTGTATCCAGGTAGTTA 60.683 40.741 0.00 0.00 0.00 2.24
773 855 7.861372 CGTATTTGAGTGTATCCAGGTAGTTAG 59.139 40.741 0.00 0.00 0.00 2.34
774 856 7.973048 ATTTGAGTGTATCCAGGTAGTTAGA 57.027 36.000 0.00 0.00 0.00 2.10
775 857 6.770746 TTGAGTGTATCCAGGTAGTTAGAC 57.229 41.667 0.00 0.00 0.00 2.59
807 889 2.282555 CACATCGAGGCGTATTTGAGTG 59.717 50.000 0.00 0.00 0.00 3.51
825 909 3.096495 TATCCAGGCCAGCCCCAC 61.096 66.667 5.01 0.00 36.58 4.61
896 980 8.757982 AGGAGTGATTATTGCATATTTCTGTT 57.242 30.769 0.00 0.00 0.00 3.16
920 1004 8.983724 GTTATAATACTTGAGTGATTCAGGAGC 58.016 37.037 0.00 0.00 36.46 4.70
921 1005 5.426689 AATACTTGAGTGATTCAGGAGCA 57.573 39.130 0.00 0.00 36.46 4.26
946 1030 6.834959 GGTTTAGTAGCCTTATAAACCGTC 57.165 41.667 12.19 0.00 44.93 4.79
951 1035 5.780984 AGTAGCCTTATAAACCGTCTATGC 58.219 41.667 0.00 0.00 0.00 3.14
975 1060 1.541588 CTCTACCTTTGTTTGCAGGGC 59.458 52.381 0.00 0.00 34.02 5.19
1013 1098 3.933861 AGAACACATGGAAGGGGATAC 57.066 47.619 0.00 0.00 0.00 2.24
1027 1112 2.892784 GGATACGTTCCAGGAAGAGG 57.107 55.000 0.54 0.00 44.74 3.69
1067 1152 0.169230 AAGCACAAAAACGTCGCACA 59.831 45.000 0.00 0.00 0.00 4.57
1107 1192 1.141053 GACACACAAGGGAGAGTGGTT 59.859 52.381 0.00 0.00 39.99 3.67
1122 1207 2.777692 AGTGGTTGACTTTGAGGGAAGA 59.222 45.455 0.00 0.00 0.00 2.87
1139 1224 4.500375 GGGAAGATTTGTAATGGCAGATGC 60.500 45.833 0.00 0.00 41.14 3.91
1146 1231 0.108377 TAATGGCAGATGCACGACGT 60.108 50.000 7.19 0.00 44.36 4.34
1169 1254 7.091443 CGTCAGTTCCTCTGTTTTAAGTATCT 58.909 38.462 0.00 0.00 43.97 1.98
1172 1257 8.242053 TCAGTTCCTCTGTTTTAAGTATCTACG 58.758 37.037 0.00 0.00 43.97 3.51
1181 1266 8.830201 TGTTTTAAGTATCTACGCAAAGGTAA 57.170 30.769 0.00 0.00 0.00 2.85
1191 1276 2.031157 ACGCAAAGGTAAGAACATGTGC 60.031 45.455 0.00 0.00 45.21 4.57
1529 1616 6.261158 TCGTGCCGGATTATCATTTCAAAATA 59.739 34.615 5.05 0.00 0.00 1.40
1531 1618 7.594758 CGTGCCGGATTATCATTTCAAAATATT 59.405 33.333 5.05 0.00 0.00 1.28
2000 2087 4.552767 GCACATTATCTCATGTAACCGTGC 60.553 45.833 11.76 11.76 35.51 5.34
2010 2097 3.815856 TGTAACCGTGCGGGAAATATA 57.184 42.857 15.44 0.00 39.97 0.86
2086 2174 8.312669 AGAACATTAACTAGACTATCAGGCTT 57.687 34.615 0.00 0.00 33.88 4.35
2089 2177 6.841755 ACATTAACTAGACTATCAGGCTTCCT 59.158 38.462 0.00 0.00 33.88 3.36
2146 2234 5.597806 TGTGTTGTTTCTACGAGATCTTGT 58.402 37.500 19.55 19.55 0.00 3.16
2360 2452 4.444164 GGTCCACCATGGTTGAATGTTTTT 60.444 41.667 19.65 0.00 39.03 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.364626 GCACTTCCACGGAGCTGATG 61.365 60.000 0.00 0.00 0.00 3.07
20 21 1.339097 GTGATATAGGGACGGGCACT 58.661 55.000 0.00 0.00 0.00 4.40
71 72 1.771255 GGATATGGTTGCTGGAGACCT 59.229 52.381 0.00 0.00 36.86 3.85
72 73 1.202818 GGGATATGGTTGCTGGAGACC 60.203 57.143 0.00 0.00 36.45 3.85
73 74 1.771255 AGGGATATGGTTGCTGGAGAC 59.229 52.381 0.00 0.00 0.00 3.36
74 75 2.196742 AGGGATATGGTTGCTGGAGA 57.803 50.000 0.00 0.00 0.00 3.71
75 76 2.441001 AGAAGGGATATGGTTGCTGGAG 59.559 50.000 0.00 0.00 0.00 3.86
76 77 2.439507 GAGAAGGGATATGGTTGCTGGA 59.560 50.000 0.00 0.00 0.00 3.86
77 78 2.487986 GGAGAAGGGATATGGTTGCTGG 60.488 54.545 0.00 0.00 0.00 4.85
78 79 2.441001 AGGAGAAGGGATATGGTTGCTG 59.559 50.000 0.00 0.00 0.00 4.41
138 139 1.153901 TAGTTACCTGCAGACGCGC 60.154 57.895 17.39 0.00 42.97 6.86
142 143 3.505464 ACATCGTAGTTACCTGCAGAC 57.495 47.619 17.39 5.48 0.00 3.51
166 175 9.950496 ACTTTTCTGATAAGATCTTAAGCAAGA 57.050 29.630 18.79 14.84 44.77 3.02
239 258 4.034510 CGATGCAGAATAAGGTCCTCAAAC 59.965 45.833 0.00 0.00 0.00 2.93
287 309 1.137086 GACACAGGACAGCATACGGAT 59.863 52.381 0.00 0.00 0.00 4.18
298 320 0.601558 TTAGGACAGCGACACAGGAC 59.398 55.000 0.00 0.00 0.00 3.85
299 321 0.601558 GTTAGGACAGCGACACAGGA 59.398 55.000 0.00 0.00 0.00 3.86
330 381 1.965414 TGGAGGGGATAACAAGCTGA 58.035 50.000 0.00 0.00 0.00 4.26
355 406 2.173433 TCGACGAGGCGTTGACATA 58.827 52.632 5.85 0.00 44.04 2.29
383 440 1.227263 CTATCGTTCCCCACCGCAG 60.227 63.158 0.00 0.00 0.00 5.18
416 473 3.210227 TCGTTCCAGATCAAGCAACAAA 58.790 40.909 0.00 0.00 0.00 2.83
427 484 2.224161 GCAAGCCTATCTCGTTCCAGAT 60.224 50.000 0.00 0.00 36.97 2.90
442 500 2.131183 GTGACATAGATCGAGCAAGCC 58.869 52.381 2.38 0.00 0.00 4.35
458 520 5.689383 AACATGAACACCATTACTGTGAC 57.311 39.130 0.00 0.00 37.18 3.67
503 565 3.181467 CCTCAGATCCTCACAAAGCTAGG 60.181 52.174 0.00 0.00 0.00 3.02
533 595 5.064558 CCATCTCTGAAAGAATGATCCCTG 58.935 45.833 0.00 0.00 46.34 4.45
534 596 4.725810 ACCATCTCTGAAAGAATGATCCCT 59.274 41.667 0.00 0.00 46.34 4.20
647 728 3.868200 CTCACCACCCCACAAGGCC 62.868 68.421 0.00 0.00 0.00 5.19
686 768 1.367471 CCACGTGACAGGCTCTTCA 59.633 57.895 19.30 0.00 0.00 3.02
727 809 1.589630 CTCGATGTGAACCCACGGA 59.410 57.895 0.00 0.00 46.06 4.69
728 810 1.447838 CCTCGATGTGAACCCACGG 60.448 63.158 0.00 0.00 46.06 4.94
729 811 2.100631 GCCTCGATGTGAACCCACG 61.101 63.158 0.00 0.00 46.06 4.94
730 812 2.100631 CGCCTCGATGTGAACCCAC 61.101 63.158 0.00 0.00 43.46 4.61
731 813 1.252215 TACGCCTCGATGTGAACCCA 61.252 55.000 8.30 0.00 0.00 4.51
732 814 0.104304 ATACGCCTCGATGTGAACCC 59.896 55.000 8.30 0.00 0.00 4.11
733 815 1.935933 AATACGCCTCGATGTGAACC 58.064 50.000 8.30 0.00 0.00 3.62
734 816 2.927477 TCAAATACGCCTCGATGTGAAC 59.073 45.455 8.30 0.00 0.00 3.18
735 817 3.186909 CTCAAATACGCCTCGATGTGAA 58.813 45.455 8.30 0.00 0.00 3.18
736 818 2.165641 ACTCAAATACGCCTCGATGTGA 59.834 45.455 8.30 0.00 0.00 3.58
737 819 2.282555 CACTCAAATACGCCTCGATGTG 59.717 50.000 0.00 0.00 0.00 3.21
738 820 2.094182 ACACTCAAATACGCCTCGATGT 60.094 45.455 0.00 0.00 0.00 3.06
739 821 2.540515 ACACTCAAATACGCCTCGATG 58.459 47.619 0.00 0.00 0.00 3.84
740 822 2.961526 ACACTCAAATACGCCTCGAT 57.038 45.000 0.00 0.00 0.00 3.59
741 823 3.243301 GGATACACTCAAATACGCCTCGA 60.243 47.826 0.00 0.00 0.00 4.04
742 824 3.050619 GGATACACTCAAATACGCCTCG 58.949 50.000 0.00 0.00 0.00 4.63
743 825 4.051922 CTGGATACACTCAAATACGCCTC 58.948 47.826 0.00 0.00 46.17 4.70
744 826 3.181465 CCTGGATACACTCAAATACGCCT 60.181 47.826 0.00 0.00 46.17 5.52
745 827 3.131396 CCTGGATACACTCAAATACGCC 58.869 50.000 0.00 0.00 46.17 5.68
746 828 3.793559 ACCTGGATACACTCAAATACGC 58.206 45.455 0.00 0.00 46.17 4.42
747 829 6.145338 ACTACCTGGATACACTCAAATACG 57.855 41.667 0.00 0.00 46.17 3.06
748 830 8.910944 TCTAACTACCTGGATACACTCAAATAC 58.089 37.037 0.00 0.00 46.17 1.89
749 831 8.910944 GTCTAACTACCTGGATACACTCAAATA 58.089 37.037 0.00 0.00 46.17 1.40
750 832 7.620094 AGTCTAACTACCTGGATACACTCAAAT 59.380 37.037 0.00 0.00 46.17 2.32
751 833 6.952358 AGTCTAACTACCTGGATACACTCAAA 59.048 38.462 0.00 0.00 46.17 2.69
752 834 6.491383 AGTCTAACTACCTGGATACACTCAA 58.509 40.000 0.00 0.00 46.17 3.02
753 835 6.069556 AGAGTCTAACTACCTGGATACACTCA 60.070 42.308 0.00 0.00 46.17 3.41
754 836 6.261381 CAGAGTCTAACTACCTGGATACACTC 59.739 46.154 0.00 2.60 46.17 3.51
755 837 6.123651 CAGAGTCTAACTACCTGGATACACT 58.876 44.000 0.00 0.00 46.17 3.55
756 838 5.887035 ACAGAGTCTAACTACCTGGATACAC 59.113 44.000 0.00 0.00 46.17 2.90
758 840 5.236911 CGACAGAGTCTAACTACCTGGATAC 59.763 48.000 0.00 0.00 0.00 2.24
759 841 5.366460 CGACAGAGTCTAACTACCTGGATA 58.634 45.833 0.00 0.00 0.00 2.59
760 842 4.200874 CGACAGAGTCTAACTACCTGGAT 58.799 47.826 0.00 0.00 0.00 3.41
761 843 3.607741 CGACAGAGTCTAACTACCTGGA 58.392 50.000 0.00 0.00 0.00 3.86
762 844 2.683867 CCGACAGAGTCTAACTACCTGG 59.316 54.545 0.00 0.00 0.00 4.45
763 845 3.345414 ACCGACAGAGTCTAACTACCTG 58.655 50.000 0.00 0.00 0.00 4.00
764 846 3.717452 ACCGACAGAGTCTAACTACCT 57.283 47.619 0.00 0.00 0.00 3.08
765 847 3.755378 TGAACCGACAGAGTCTAACTACC 59.245 47.826 0.00 0.00 0.00 3.18
766 848 4.214971 TGTGAACCGACAGAGTCTAACTAC 59.785 45.833 0.00 0.00 0.00 2.73
767 849 4.392047 TGTGAACCGACAGAGTCTAACTA 58.608 43.478 0.00 0.00 0.00 2.24
768 850 3.220110 TGTGAACCGACAGAGTCTAACT 58.780 45.455 0.00 0.00 0.00 2.24
769 851 3.637998 TGTGAACCGACAGAGTCTAAC 57.362 47.619 0.00 0.00 0.00 2.34
770 852 3.119955 CGATGTGAACCGACAGAGTCTAA 60.120 47.826 0.00 0.00 0.00 2.10
771 853 2.418976 CGATGTGAACCGACAGAGTCTA 59.581 50.000 0.00 0.00 0.00 2.59
772 854 1.200252 CGATGTGAACCGACAGAGTCT 59.800 52.381 0.00 0.00 0.00 3.24
773 855 1.199327 TCGATGTGAACCGACAGAGTC 59.801 52.381 0.00 0.00 0.00 3.36
774 856 1.200252 CTCGATGTGAACCGACAGAGT 59.800 52.381 0.00 0.00 0.00 3.24
775 857 1.468224 CCTCGATGTGAACCGACAGAG 60.468 57.143 0.00 0.00 0.00 3.35
807 889 3.096495 TGGGGCTGGCCTGGATAC 61.096 66.667 20.47 2.52 36.10 2.24
825 909 3.612860 CCATAACAGAACTCTCGTTTCCG 59.387 47.826 0.00 0.00 32.39 4.30
832 916 5.669164 AGAGGTTCCATAACAGAACTCTC 57.331 43.478 3.89 8.22 42.63 3.20
870 954 9.851686 AACAGAAATATGCAATAATCACTCCTA 57.148 29.630 0.00 0.00 29.06 2.94
894 978 8.983724 GCTCCTGAATCACTCAAGTATTATAAC 58.016 37.037 0.00 0.00 32.17 1.89
895 979 8.704668 TGCTCCTGAATCACTCAAGTATTATAA 58.295 33.333 0.00 0.00 32.17 0.98
896 980 8.250143 TGCTCCTGAATCACTCAAGTATTATA 57.750 34.615 0.00 0.00 32.17 0.98
920 1004 5.756833 CGGTTTATAAGGCTACTAAACCCTG 59.243 44.000 27.94 18.86 46.03 4.45
921 1005 5.426509 ACGGTTTATAAGGCTACTAAACCCT 59.573 40.000 27.94 20.47 46.03 4.34
946 1030 5.634896 CAAACAAAGGTAGAGCAAGCATAG 58.365 41.667 0.00 0.00 0.00 2.23
951 1035 3.304928 CCTGCAAACAAAGGTAGAGCAAG 60.305 47.826 0.00 0.00 30.98 4.01
975 1060 5.864474 GTGTTCTAGGTCACTTCATGTAGTG 59.136 44.000 22.57 22.57 45.46 2.74
1013 1098 2.543777 TTTGACCTCTTCCTGGAACG 57.456 50.000 4.68 2.46 0.00 3.95
1067 1152 4.161565 TGTCGGCACAATATCCTAGAAACT 59.838 41.667 0.00 0.00 0.00 2.66
1107 1192 6.434028 CCATTACAAATCTTCCCTCAAAGTCA 59.566 38.462 0.00 0.00 0.00 3.41
1122 1207 3.016031 TCGTGCATCTGCCATTACAAAT 58.984 40.909 0.00 0.00 41.18 2.32
1169 1254 3.187637 GCACATGTTCTTACCTTTGCGTA 59.812 43.478 0.00 0.00 0.00 4.42
1172 1257 3.253188 TCAGCACATGTTCTTACCTTTGC 59.747 43.478 0.00 0.00 0.00 3.68
1181 1266 5.779529 AAAAAGATGTCAGCACATGTTCT 57.220 34.783 0.00 0.00 43.87 3.01
1529 1616 4.943705 AGCCAACTTACGATGTTCATCAAT 59.056 37.500 12.34 3.47 0.00 2.57
1531 1618 3.937814 AGCCAACTTACGATGTTCATCA 58.062 40.909 12.34 0.00 0.00 3.07
1577 1664 8.328014 TGCAATAGGATTCATATATGGCTAACA 58.672 33.333 12.78 0.00 0.00 2.41
1869 1956 6.185114 AGCAGAGCAATCTTTGGTATATCT 57.815 37.500 0.00 0.00 42.23 1.98
1965 2052 9.888878 CATGAGATAATGTGCTAGTTTTATTGG 57.111 33.333 0.00 0.00 0.00 3.16
2101 2189 6.820656 CACATCTGCCTGATAGTCTAGTTTTT 59.179 38.462 0.00 0.00 33.36 1.94
2102 2190 6.070538 ACACATCTGCCTGATAGTCTAGTTTT 60.071 38.462 0.00 0.00 33.36 2.43
2103 2191 5.423610 ACACATCTGCCTGATAGTCTAGTTT 59.576 40.000 0.00 0.00 33.36 2.66
2104 2192 4.959210 ACACATCTGCCTGATAGTCTAGTT 59.041 41.667 0.00 0.00 33.36 2.24
2105 2193 4.541705 ACACATCTGCCTGATAGTCTAGT 58.458 43.478 0.00 0.00 33.36 2.57
2405 2497 6.596888 TCTGATGCTTGAACCAAATCTTCTAG 59.403 38.462 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.