Multiple sequence alignment - TraesCS6B01G365100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G365100 chr6B 100.000 3429 0 0 1 3429 636794584 636798012 0.000000e+00 6333.0
1 TraesCS6B01G365100 chr6B 93.663 789 48 1 1 787 560974923 560975711 0.000000e+00 1179.0
2 TraesCS6B01G365100 chr6D 92.034 2674 137 44 799 3429 422604910 422607550 0.000000e+00 3688.0
3 TraesCS6B01G365100 chr4B 93.182 792 52 1 1 790 428982933 428983724 0.000000e+00 1162.0
4 TraesCS6B01G365100 chr2B 91.519 790 63 3 1 787 594135410 594134622 0.000000e+00 1085.0
5 TraesCS6B01G365100 chr2B 91.497 788 65 1 2 787 5354150 5354937 0.000000e+00 1083.0
6 TraesCS6B01G365100 chr7B 91.150 791 67 2 1 789 40156287 40157076 0.000000e+00 1070.0
7 TraesCS6B01G365100 chr7B 90.841 797 70 2 1 794 480603493 480604289 0.000000e+00 1064.0
8 TraesCS6B01G365100 chr7B 90.633 790 70 3 1 788 513279257 513278470 0.000000e+00 1046.0
9 TraesCS6B01G365100 chr1B 89.254 791 80 4 1 787 648710742 648709953 0.000000e+00 985.0
10 TraesCS6B01G365100 chr4A 88.832 788 85 2 1 786 102621093 102620307 0.000000e+00 965.0
11 TraesCS6B01G365100 chr6A 93.125 640 32 7 2021 2651 565344419 565345055 0.000000e+00 928.0
12 TraesCS6B01G365100 chr6A 93.390 469 24 4 890 1358 565343387 565343848 0.000000e+00 688.0
13 TraesCS6B01G365100 chr6A 87.159 623 45 18 2654 3260 565345134 565345737 0.000000e+00 675.0
14 TraesCS6B01G365100 chr6A 91.389 360 26 3 1669 2025 565344039 565344396 3.980000e-134 488.0
15 TraesCS6B01G365100 chr6A 100.000 29 0 0 3097 3125 406135821 406135793 2.000000e-03 54.7
16 TraesCS6B01G365100 chr2D 83.030 165 19 8 3163 3325 587278962 587278805 1.280000e-29 141.0
17 TraesCS6B01G365100 chr2A 79.167 192 22 10 3166 3343 708003931 708004118 2.160000e-22 117.0
18 TraesCS6B01G365100 chr7A 97.059 34 1 0 3097 3130 629241833 629241800 1.330000e-04 58.4
19 TraesCS6B01G365100 chr5B 100.000 31 0 0 3097 3127 121533918 121533948 1.330000e-04 58.4
20 TraesCS6B01G365100 chr3B 100.000 28 0 0 3100 3127 30425433 30425406 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G365100 chr6B 636794584 636798012 3428 False 6333.00 6333 100.00000 1 3429 1 chr6B.!!$F2 3428
1 TraesCS6B01G365100 chr6B 560974923 560975711 788 False 1179.00 1179 93.66300 1 787 1 chr6B.!!$F1 786
2 TraesCS6B01G365100 chr6D 422604910 422607550 2640 False 3688.00 3688 92.03400 799 3429 1 chr6D.!!$F1 2630
3 TraesCS6B01G365100 chr4B 428982933 428983724 791 False 1162.00 1162 93.18200 1 790 1 chr4B.!!$F1 789
4 TraesCS6B01G365100 chr2B 594134622 594135410 788 True 1085.00 1085 91.51900 1 787 1 chr2B.!!$R1 786
5 TraesCS6B01G365100 chr2B 5354150 5354937 787 False 1083.00 1083 91.49700 2 787 1 chr2B.!!$F1 785
6 TraesCS6B01G365100 chr7B 40156287 40157076 789 False 1070.00 1070 91.15000 1 789 1 chr7B.!!$F1 788
7 TraesCS6B01G365100 chr7B 480603493 480604289 796 False 1064.00 1064 90.84100 1 794 1 chr7B.!!$F2 793
8 TraesCS6B01G365100 chr7B 513278470 513279257 787 True 1046.00 1046 90.63300 1 788 1 chr7B.!!$R1 787
9 TraesCS6B01G365100 chr1B 648709953 648710742 789 True 985.00 985 89.25400 1 787 1 chr1B.!!$R1 786
10 TraesCS6B01G365100 chr4A 102620307 102621093 786 True 965.00 965 88.83200 1 786 1 chr4A.!!$R1 785
11 TraesCS6B01G365100 chr6A 565343387 565345737 2350 False 694.75 928 91.26575 890 3260 4 chr6A.!!$F1 2370

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 986 0.322546 GAGGGTCCTGCGGTGAAATT 60.323 55.0 0.0 0.0 0.0 1.82 F
1293 1297 0.809241 CGCCTCATGTCTTCCTCTGC 60.809 60.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1836 1.739466 CGCCAACACTAGCATCAACAT 59.261 47.619 0.0 0.0 0.0 2.71 R
3044 3198 0.107654 GAATGGAGGGTTCGGTGAGG 60.108 60.000 0.0 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.682323 TGAACTTTGAGCTGCATGCAA 59.318 42.857 22.88 3.32 45.94 4.08
146 147 2.242670 GCGTACGCGATGATGTGC 59.757 61.111 26.17 2.53 41.33 4.57
241 242 1.152963 GGCTGGCGGTCCAATACAT 60.153 57.895 0.00 0.00 42.91 2.29
376 377 1.439679 GCTAGACAGGTTTGGTTCCG 58.560 55.000 0.00 0.00 0.00 4.30
394 395 0.608640 CGGTGCTTCTCCAAGGTAGT 59.391 55.000 0.00 0.00 0.00 2.73
423 424 1.246056 GGAGCTGCTGCCAAATGACA 61.246 55.000 7.01 0.00 40.80 3.58
448 449 0.477597 AGGGTGGAAGAATGGTGGGA 60.478 55.000 0.00 0.00 0.00 4.37
528 531 7.786030 TGTTGATTTGTTGGAGTATTTGGAAA 58.214 30.769 0.00 0.00 0.00 3.13
688 691 1.972198 CTACGGAGGTGTTGGCAGA 59.028 57.895 0.00 0.00 0.00 4.26
702 706 2.126307 CAGACACGCCTCGGTGAG 60.126 66.667 3.09 0.00 40.38 3.51
862 866 3.375782 AACTTTTTCATGACTGGCTGC 57.624 42.857 0.00 0.00 0.00 5.25
863 867 2.590821 ACTTTTTCATGACTGGCTGCT 58.409 42.857 0.00 0.00 0.00 4.24
864 868 2.555757 ACTTTTTCATGACTGGCTGCTC 59.444 45.455 0.00 0.00 0.00 4.26
924 928 4.697756 TGAACCGCTGAAGGCCCG 62.698 66.667 0.00 0.00 37.74 6.13
964 968 1.403814 CGGAGCCTGTAGATTCTGGA 58.596 55.000 0.00 0.00 0.00 3.86
982 986 0.322546 GAGGGTCCTGCGGTGAAATT 60.323 55.000 0.00 0.00 0.00 1.82
987 991 2.365582 GTCCTGCGGTGAAATTACCAT 58.634 47.619 0.00 0.00 40.89 3.55
991 995 3.312421 CCTGCGGTGAAATTACCATACTG 59.688 47.826 0.00 0.00 40.89 2.74
1293 1297 0.809241 CGCCTCATGTCTTCCTCTGC 60.809 60.000 0.00 0.00 0.00 4.26
1302 1306 4.744795 TGTCTTCCTCTGCCTATCTTTC 57.255 45.455 0.00 0.00 0.00 2.62
1310 1314 3.640967 CTCTGCCTATCTTTCTAGCTGGT 59.359 47.826 0.00 0.00 0.00 4.00
1351 1355 1.377536 GAGCCACCAAATCTCAGAGC 58.622 55.000 0.00 0.00 0.00 4.09
1375 1408 6.484977 GCAAATTTAGGTCTAGCTTGCTATCT 59.515 38.462 2.59 4.66 0.00 1.98
1379 1412 7.425224 TTTAGGTCTAGCTTGCTATCTCTTT 57.575 36.000 2.59 0.00 0.00 2.52
1380 1413 8.534954 TTTAGGTCTAGCTTGCTATCTCTTTA 57.465 34.615 2.59 0.00 0.00 1.85
1437 1470 4.813161 TGTTAATGTGCCCATTTGTGTTTG 59.187 37.500 0.00 0.00 41.50 2.93
1439 1472 3.557228 ATGTGCCCATTTGTGTTTGTT 57.443 38.095 0.00 0.00 0.00 2.83
1509 1542 4.301072 TTCCCCTCGATTGTTTCAGATT 57.699 40.909 0.00 0.00 0.00 2.40
1512 1545 3.758554 CCCCTCGATTGTTTCAGATTTGT 59.241 43.478 0.00 0.00 0.00 2.83
1537 1570 7.913297 GTCAATTGTTCTTTGCTTGTACACTAA 59.087 33.333 5.13 0.00 0.00 2.24
1538 1571 8.462811 TCAATTGTTCTTTGCTTGTACACTAAA 58.537 29.630 5.13 0.00 0.00 1.85
1944 1981 1.145803 GTGAGGTGCGGAACTGTTAC 58.854 55.000 0.00 0.00 0.00 2.50
1980 2017 6.016555 AGTTTGGAGCCCTATGTTTAACATT 58.983 36.000 16.08 0.00 39.88 2.71
2033 2098 3.684788 GTCTTTCTTCAATAAGGCAGCGA 59.315 43.478 0.00 0.00 33.22 4.93
2051 2116 5.513141 GCAGCGAGATACAATTTTCTTTTCC 59.487 40.000 0.00 0.00 0.00 3.13
2086 2152 7.984050 AGAGTATACATGTTTTCCTGTCATCTG 59.016 37.037 2.30 0.00 31.56 2.90
2089 2155 7.765695 ATACATGTTTTCCTGTCATCTGTTT 57.234 32.000 2.30 0.00 31.56 2.83
2260 2326 2.735134 GAGCGAATGTACAAACGTTCCT 59.265 45.455 21.45 13.30 45.19 3.36
2272 2338 3.662247 AACGTTCCTGTCTACCTGAAG 57.338 47.619 0.00 0.00 0.00 3.02
2290 2356 2.320587 GCCAGGCTCACTTGTCGTG 61.321 63.158 3.29 0.00 45.18 4.35
2526 2594 6.377146 TCATGGAGAAGTTTAATTAGGTTGCC 59.623 38.462 0.00 0.00 0.00 4.52
2540 2608 1.134946 GGTTGCCACATACAATCAGCC 59.865 52.381 0.00 0.00 0.00 4.85
2545 2613 4.276642 TGCCACATACAATCAGCCAAATA 58.723 39.130 0.00 0.00 0.00 1.40
2573 2645 5.820423 TGGGTGTGTGAATACAATACTATGC 59.180 40.000 0.00 0.00 38.82 3.14
2575 2647 6.017934 GGGTGTGTGAATACAATACTATGCAG 60.018 42.308 0.00 0.00 38.82 4.41
2670 2819 5.734855 TCTTTAAATATTGACGAGCCAGC 57.265 39.130 0.00 0.00 0.00 4.85
2681 2830 2.860735 GACGAGCCAGCTTGTAATACAG 59.139 50.000 12.50 0.00 40.50 2.74
2695 2844 9.273016 GCTTGTAATACAGTATGAATACACCAT 57.727 33.333 3.87 0.00 39.69 3.55
2834 2983 4.989279 AAGCGCACTCATTAATTCCATT 57.011 36.364 11.47 0.00 0.00 3.16
2861 3010 4.728058 GCACACGGCACACATTTT 57.272 50.000 0.00 0.00 43.97 1.82
2862 3011 2.970576 GCACACGGCACACATTTTT 58.029 47.368 0.00 0.00 43.97 1.94
2923 3072 4.953667 TGAGCCTCATACATGATTCAGAC 58.046 43.478 0.00 0.00 36.02 3.51
3036 3190 3.875865 GGGTAGTGTTGATCCCCAC 57.124 57.895 4.17 4.17 35.32 4.61
3037 3191 1.286248 GGGTAGTGTTGATCCCCACT 58.714 55.000 15.98 15.98 43.90 4.00
3038 3192 1.065418 GGGTAGTGTTGATCCCCACTG 60.065 57.143 19.33 0.00 41.77 3.66
3039 3193 1.679032 GGTAGTGTTGATCCCCACTGC 60.679 57.143 19.33 17.89 41.77 4.40
3040 3194 0.618458 TAGTGTTGATCCCCACTGCC 59.382 55.000 19.33 0.00 41.77 4.85
3041 3195 1.074775 GTGTTGATCCCCACTGCCA 59.925 57.895 4.96 0.00 0.00 4.92
3042 3196 1.074775 TGTTGATCCCCACTGCCAC 59.925 57.895 0.00 0.00 0.00 5.01
3043 3197 1.380302 GTTGATCCCCACTGCCACT 59.620 57.895 0.00 0.00 0.00 4.00
3044 3198 0.678048 GTTGATCCCCACTGCCACTC 60.678 60.000 0.00 0.00 0.00 3.51
3092 3253 2.224548 GGCCAACTTCAACACTAGACCT 60.225 50.000 0.00 0.00 0.00 3.85
3142 3310 0.584876 GGGTCAGAAAAACGGACACG 59.415 55.000 0.00 0.00 43.53 4.49
3167 3335 2.680352 AGATGTGGTCGTCCGGCT 60.680 61.111 0.00 0.00 36.30 5.52
3190 3359 2.230992 CTGCATCCCAAATTTTGTCCGA 59.769 45.455 8.26 1.71 0.00 4.55
3282 3458 2.104281 ACGTCCACAAAGTCTTAAGGCT 59.896 45.455 3.04 3.04 0.00 4.58
3301 3477 4.342092 AGGCTGCACATTCAAACTAAACTT 59.658 37.500 0.50 0.00 0.00 2.66
3344 3520 4.563140 AAAACTAGATTTAGGGCCGTCA 57.437 40.909 0.00 0.00 0.00 4.35
3345 3521 4.563140 AAACTAGATTTAGGGCCGTCAA 57.437 40.909 0.00 0.00 0.00 3.18
3348 3524 0.743345 AGATTTAGGGCCGTCAACGC 60.743 55.000 0.00 0.00 38.18 4.84
3370 3549 4.719369 GCCGTCGCCGTCTTCAGT 62.719 66.667 0.00 0.00 0.00 3.41
3392 3571 2.971452 GCCCTCGTCGTCCTCTTT 59.029 61.111 0.00 0.00 0.00 2.52
3418 3597 3.313012 TTGTCAGGTTGATGTAGGACG 57.687 47.619 0.00 0.00 0.00 4.79
3419 3598 2.521126 TGTCAGGTTGATGTAGGACGA 58.479 47.619 0.00 0.00 0.00 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.227205 GCAGAGCCTGATGAGTCGG 60.227 63.158 6.40 0.00 32.44 4.79
22 23 1.812525 TCGCAGAGCCTGATGAGTC 59.187 57.895 6.40 0.00 32.44 3.36
69 70 3.705579 CAGATCATTCTGTCCTCCTCACT 59.294 47.826 0.00 0.00 43.73 3.41
94 95 2.115052 TGCCCGCAGTGTTCCATT 59.885 55.556 0.00 0.00 0.00 3.16
146 147 3.726607 CTGAAATCTGATCCCTCCTTCG 58.273 50.000 0.00 0.00 0.00 3.79
241 242 0.750546 CCTATCCGACGTCCAGACCA 60.751 60.000 10.58 0.00 0.00 4.02
353 354 2.738013 ACCAAACCTGTCTAGCGTAC 57.262 50.000 0.00 0.00 0.00 3.67
376 377 1.623811 TCACTACCTTGGAGAAGCACC 59.376 52.381 0.00 0.00 0.00 5.01
394 395 0.108186 CAGCAGCTCCAACGGTATCA 60.108 55.000 0.00 0.00 0.00 2.15
423 424 2.379907 ACCATTCTTCCACCCTGTCATT 59.620 45.455 0.00 0.00 0.00 2.57
448 449 2.696187 GGTATCCTCTTCCTCGAAGCTT 59.304 50.000 0.00 0.00 39.29 3.74
528 531 4.324267 CGAAAACCCTACCATTTCTCTGT 58.676 43.478 0.00 0.00 32.28 3.41
647 650 2.093106 ACCTAGGCGACTACTCACAAG 58.907 52.381 9.30 0.00 43.67 3.16
670 673 0.389948 GTCTGCCAACACCTCCGTAG 60.390 60.000 0.00 0.00 0.00 3.51
705 709 3.754965 ACAAGATATTACATGGCCGCAT 58.245 40.909 0.00 0.00 0.00 4.73
841 845 3.385755 AGCAGCCAGTCATGAAAAAGTTT 59.614 39.130 0.00 0.00 0.00 2.66
844 848 2.413765 CGAGCAGCCAGTCATGAAAAAG 60.414 50.000 0.00 0.00 0.00 2.27
845 849 1.536766 CGAGCAGCCAGTCATGAAAAA 59.463 47.619 0.00 0.00 0.00 1.94
859 863 1.639298 CCGAAAGAAAGGGCGAGCAG 61.639 60.000 0.00 0.00 0.00 4.24
860 864 1.671054 CCGAAAGAAAGGGCGAGCA 60.671 57.895 0.00 0.00 0.00 4.26
861 865 3.040414 GCCGAAAGAAAGGGCGAGC 62.040 63.158 0.00 0.00 37.06 5.03
862 866 3.178539 GCCGAAAGAAAGGGCGAG 58.821 61.111 0.00 0.00 37.06 5.03
869 873 2.452505 CCCCATTAAGGCCGAAAGAAA 58.547 47.619 0.00 0.00 35.39 2.52
924 928 2.408368 GCATTTGTTCGCTAACCAAAGC 59.592 45.455 0.00 0.00 39.21 3.51
940 944 2.171448 AGAATCTACAGGCTCCGCATTT 59.829 45.455 0.00 0.00 0.00 2.32
943 947 0.461548 CAGAATCTACAGGCTCCGCA 59.538 55.000 0.00 0.00 0.00 5.69
982 986 4.616553 ACCATGGTGACTACAGTATGGTA 58.383 43.478 18.99 0.00 44.58 3.25
987 991 3.444742 CGGTAACCATGGTGACTACAGTA 59.555 47.826 28.30 8.32 30.34 2.74
991 995 2.733227 CGACGGTAACCATGGTGACTAC 60.733 54.545 28.30 21.11 30.34 2.73
1293 1297 4.404073 ACAGTGACCAGCTAGAAAGATAGG 59.596 45.833 0.00 0.00 0.00 2.57
1302 1306 0.969149 TGGACACAGTGACCAGCTAG 59.031 55.000 19.44 0.00 37.28 3.42
1351 1355 7.930865 AGAGATAGCAAGCTAGACCTAAATTTG 59.069 37.037 7.91 0.00 31.45 2.32
1380 1413 9.636789 TCATCTCATCAACATTTAGGATTCATT 57.363 29.630 0.00 0.00 0.00 2.57
1413 1446 4.679373 ACACAAATGGGCACATTAACAA 57.321 36.364 16.06 0.00 46.25 2.83
1437 1470 5.460091 GTGAACCATTCTTCTGCAAAAGAAC 59.540 40.000 17.19 5.37 45.38 3.01
1439 1472 4.889409 AGTGAACCATTCTTCTGCAAAAGA 59.111 37.500 0.00 0.00 33.50 2.52
1509 1542 6.529829 GTGTACAAGCAAAGAACAATTGACAA 59.470 34.615 13.59 0.00 0.00 3.18
1512 1545 6.449635 AGTGTACAAGCAAAGAACAATTGA 57.550 33.333 13.59 0.00 0.00 2.57
1537 1570 3.771216 ACAATTGCCAGATCTGAACCTT 58.229 40.909 24.62 9.17 0.00 3.50
1538 1571 3.446442 ACAATTGCCAGATCTGAACCT 57.554 42.857 24.62 3.27 0.00 3.50
1802 1836 1.739466 CGCCAACACTAGCATCAACAT 59.261 47.619 0.00 0.00 0.00 2.71
1944 1981 4.637977 GGGCTCCAAACTATTGAGAAGAAG 59.362 45.833 0.00 0.00 38.94 2.85
2005 2042 7.004555 TGCCTTATTGAAGAAAGACTGTCTA 57.995 36.000 11.30 0.00 34.25 2.59
2025 2062 3.878778 AGAAAATTGTATCTCGCTGCCT 58.121 40.909 0.00 0.00 0.00 4.75
2026 2063 4.622701 AAGAAAATTGTATCTCGCTGCC 57.377 40.909 0.00 0.00 0.00 4.85
2051 2116 9.994432 GGAAAACATGTATACTCTCATCAAAAG 57.006 33.333 0.00 0.00 0.00 2.27
2071 2137 8.592155 GTTTGTTAAAACAGATGACAGGAAAAC 58.408 33.333 0.00 0.00 44.30 2.43
2089 2155 8.902806 CCCTAGATTGCAATATCAGTTTGTTAA 58.097 33.333 12.97 0.00 0.00 2.01
2272 2338 2.031163 ACGACAAGTGAGCCTGGC 59.969 61.111 11.65 11.65 0.00 4.85
2290 2356 2.528743 CCGTGCATCGCCTGACATC 61.529 63.158 0.00 0.00 38.35 3.06
2526 2594 7.225145 CCCAAAATATTTGGCTGATTGTATGTG 59.775 37.037 14.90 0.00 38.23 3.21
2540 2608 8.824159 TTGTATTCACACACCCAAAATATTTG 57.176 30.769 0.39 0.00 33.30 2.32
2545 2613 7.775053 AGTATTGTATTCACACACCCAAAAT 57.225 32.000 0.00 0.00 33.30 1.82
2553 2625 9.660180 TTAACTGCATAGTATTGTATTCACACA 57.340 29.630 0.00 0.00 35.69 3.72
2681 2830 6.935208 GGACTAGGGAAATGGTGTATTCATAC 59.065 42.308 0.00 0.00 0.00 2.39
2695 2844 5.546499 ACAACTAATGTCAGGACTAGGGAAA 59.454 40.000 0.65 0.00 37.96 3.13
2816 2965 7.471721 TGTTTCTAATGGAATTAATGAGTGCG 58.528 34.615 0.00 0.00 38.53 5.34
2860 3009 4.892934 AGTTCACCAGCCATCAACTAAAAA 59.107 37.500 0.00 0.00 0.00 1.94
2861 3010 4.278170 CAGTTCACCAGCCATCAACTAAAA 59.722 41.667 0.00 0.00 0.00 1.52
2862 3011 3.820467 CAGTTCACCAGCCATCAACTAAA 59.180 43.478 0.00 0.00 0.00 1.85
2923 3072 6.636666 GTTAAGAACCATGTGCATCAATTG 57.363 37.500 0.00 0.00 0.00 2.32
2988 3137 1.161563 TCGTTCCCAAGCAACCGAAC 61.162 55.000 0.00 0.00 32.97 3.95
3020 3174 1.679032 GGCAGTGGGGATCAACACTAC 60.679 57.143 17.75 13.55 45.52 2.73
3036 3190 1.374758 GTTCGGTGAGGAGTGGCAG 60.375 63.158 0.00 0.00 0.00 4.85
3037 3191 2.741092 GTTCGGTGAGGAGTGGCA 59.259 61.111 0.00 0.00 0.00 4.92
3038 3192 2.047179 GGTTCGGTGAGGAGTGGC 60.047 66.667 0.00 0.00 0.00 5.01
3039 3193 1.889530 GAGGGTTCGGTGAGGAGTGG 61.890 65.000 0.00 0.00 0.00 4.00
3040 3194 1.592223 GAGGGTTCGGTGAGGAGTG 59.408 63.158 0.00 0.00 0.00 3.51
3041 3195 1.609794 GGAGGGTTCGGTGAGGAGT 60.610 63.158 0.00 0.00 0.00 3.85
3042 3196 0.978146 ATGGAGGGTTCGGTGAGGAG 60.978 60.000 0.00 0.00 0.00 3.69
3043 3197 0.546747 AATGGAGGGTTCGGTGAGGA 60.547 55.000 0.00 0.00 0.00 3.71
3044 3198 0.107654 GAATGGAGGGTTCGGTGAGG 60.108 60.000 0.00 0.00 0.00 3.86
3092 3253 6.109359 ACAAAATCCAAACAAAACGGATTGA 58.891 32.000 9.12 0.00 46.44 2.57
3142 3310 3.188786 GACCACATCTGGACGCGC 61.189 66.667 5.73 0.00 40.55 6.86
3167 3335 2.289569 GGACAAAATTTGGGATGCAGCA 60.290 45.455 10.71 0.00 34.12 4.41
3254 3428 7.385752 CCTTAAGACTTTGTGGACGTTTATGTA 59.614 37.037 3.36 0.00 0.00 2.29
3255 3429 6.204108 CCTTAAGACTTTGTGGACGTTTATGT 59.796 38.462 3.36 0.00 0.00 2.29
3256 3430 6.599437 CCTTAAGACTTTGTGGACGTTTATG 58.401 40.000 3.36 0.00 0.00 1.90
3258 3432 4.512571 GCCTTAAGACTTTGTGGACGTTTA 59.487 41.667 3.36 0.00 0.00 2.01
3260 3434 2.876550 GCCTTAAGACTTTGTGGACGTT 59.123 45.455 3.36 0.00 0.00 3.99
3262 3436 2.480419 CAGCCTTAAGACTTTGTGGACG 59.520 50.000 3.36 0.00 0.00 4.79
3282 3458 8.715191 AATTTCAAGTTTAGTTTGAATGTGCA 57.285 26.923 1.75 0.00 42.31 4.57
3326 3502 2.159142 CGTTGACGGCCCTAAATCTAGT 60.159 50.000 0.00 0.00 35.37 2.57
3327 3503 2.470821 CGTTGACGGCCCTAAATCTAG 58.529 52.381 0.00 0.00 35.37 2.43
3328 3504 1.472026 GCGTTGACGGCCCTAAATCTA 60.472 52.381 5.62 0.00 40.23 1.98
3329 3505 0.743345 GCGTTGACGGCCCTAAATCT 60.743 55.000 5.62 0.00 40.23 2.40
3330 3506 1.719709 GCGTTGACGGCCCTAAATC 59.280 57.895 5.62 0.00 40.23 2.17
3331 3507 3.899395 GCGTTGACGGCCCTAAAT 58.101 55.556 5.62 0.00 40.23 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.