Multiple sequence alignment - TraesCS6B01G364800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G364800 chr6B 100.000 3475 0 0 1 3475 636490635 636494109 0.000000e+00 6418.0
1 TraesCS6B01G364800 chr6B 89.836 2745 162 69 602 3305 636586281 636583613 0.000000e+00 3415.0
2 TraesCS6B01G364800 chr6B 89.747 1736 132 28 787 2500 614311539 614313250 0.000000e+00 2178.0
3 TraesCS6B01G364800 chr6B 88.870 1806 141 36 732 2500 614581839 614583621 0.000000e+00 2167.0
4 TraesCS6B01G364800 chr6B 89.477 1739 133 31 787 2500 614436850 614438563 0.000000e+00 2152.0
5 TraesCS6B01G364800 chr6B 92.381 105 5 2 2506 2609 614583661 614583763 2.790000e-31 147.0
6 TraesCS6B01G364800 chr6D 89.464 2591 150 57 186 2697 422206278 422203732 0.000000e+00 3158.0
7 TraesCS6B01G364800 chr6D 90.404 2105 115 48 676 2726 422190400 422192471 0.000000e+00 2687.0
8 TraesCS6B01G364800 chr6D 92.947 1347 87 6 1152 2496 409347223 409348563 0.000000e+00 1954.0
9 TraesCS6B01G364800 chr6D 94.294 333 17 1 186 516 422190063 422190395 3.090000e-140 508.0
10 TraesCS6B01G364800 chr6D 85.446 426 46 9 2894 3306 422203442 422203020 2.480000e-116 429.0
11 TraesCS6B01G364800 chr6D 85.350 314 35 4 787 1093 409346574 409346883 7.240000e-82 315.0
12 TraesCS6B01G364800 chr6D 95.876 97 2 2 2506 2601 409348607 409348702 4.640000e-34 156.0
13 TraesCS6B01G364800 chr6A 93.322 1842 76 17 687 2495 564911003 564909176 0.000000e+00 2676.0
14 TraesCS6B01G364800 chr6A 92.354 1844 95 22 666 2483 564974508 564976331 0.000000e+00 2582.0
15 TraesCS6B01G364800 chr6A 93.556 1350 76 8 1152 2496 554824774 554826117 0.000000e+00 2001.0
16 TraesCS6B01G364800 chr6A 82.792 831 77 30 2510 3305 564909124 564908325 0.000000e+00 682.0
17 TraesCS6B01G364800 chr6A 90.226 266 10 6 186 442 564973993 564974251 2.000000e-87 333.0
18 TraesCS6B01G364800 chr6A 82.278 395 36 13 727 1093 554824033 554824421 9.370000e-81 311.0
19 TraesCS6B01G364800 chr6A 89.352 216 12 6 2510 2714 564907833 564907618 9.570000e-66 261.0
20 TraesCS6B01G364800 chr6A 83.613 238 18 12 2510 2726 564976396 564976633 1.640000e-48 204.0
21 TraesCS6B01G364800 chr6A 94.845 97 3 2 2506 2601 554826161 554826256 2.160000e-32 150.0
22 TraesCS6B01G364800 chr6A 86.131 137 15 1 512 644 564974258 564974394 1.010000e-30 145.0
23 TraesCS6B01G364800 chr6A 81.818 176 23 4 3307 3473 564908286 564908111 4.680000e-29 139.0
24 TraesCS6B01G364800 chr6A 90.476 105 8 2 316 419 564911354 564911251 1.680000e-28 137.0
25 TraesCS6B01G364800 chr6A 84.524 84 7 1 206 283 564911433 564911350 1.030000e-10 78.7
26 TraesCS6B01G364800 chr5B 96.410 195 4 3 2 195 346616155 346616347 5.600000e-83 318.0
27 TraesCS6B01G364800 chr5B 97.222 180 5 0 12 191 363665474 363665295 4.360000e-79 305.0
28 TraesCS6B01G364800 chr5B 95.722 187 8 0 4 190 589201024 589201210 5.640000e-78 302.0
29 TraesCS6B01G364800 chr3B 97.778 180 3 1 11 189 723448436 723448615 3.370000e-80 309.0
30 TraesCS6B01G364800 chr3B 95.337 193 9 0 1 193 787483531 787483723 1.210000e-79 307.0
31 TraesCS6B01G364800 chr2B 95.337 193 9 0 3 195 763446837 763446645 1.210000e-79 307.0
32 TraesCS6B01G364800 chr2B 95.312 192 6 2 3 191 765570160 765569969 5.640000e-78 302.0
33 TraesCS6B01G364800 chr7B 94.872 195 9 1 4 197 32329282 32329476 1.570000e-78 303.0
34 TraesCS6B01G364800 chr4B 95.767 189 6 2 4 191 667396709 667396896 1.570000e-78 303.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G364800 chr6B 636490635 636494109 3474 False 6418.000000 6418 100.000000 1 3475 1 chr6B.!!$F3 3474
1 TraesCS6B01G364800 chr6B 636583613 636586281 2668 True 3415.000000 3415 89.836000 602 3305 1 chr6B.!!$R1 2703
2 TraesCS6B01G364800 chr6B 614311539 614313250 1711 False 2178.000000 2178 89.747000 787 2500 1 chr6B.!!$F1 1713
3 TraesCS6B01G364800 chr6B 614436850 614438563 1713 False 2152.000000 2152 89.477000 787 2500 1 chr6B.!!$F2 1713
4 TraesCS6B01G364800 chr6B 614581839 614583763 1924 False 1157.000000 2167 90.625500 732 2609 2 chr6B.!!$F4 1877
5 TraesCS6B01G364800 chr6D 422203020 422206278 3258 True 1793.500000 3158 87.455000 186 3306 2 chr6D.!!$R1 3120
6 TraesCS6B01G364800 chr6D 422190063 422192471 2408 False 1597.500000 2687 92.349000 186 2726 2 chr6D.!!$F2 2540
7 TraesCS6B01G364800 chr6D 409346574 409348702 2128 False 808.333333 1954 91.391000 787 2601 3 chr6D.!!$F1 1814
8 TraesCS6B01G364800 chr6A 554824033 554826256 2223 False 820.666667 2001 90.226333 727 2601 3 chr6A.!!$F1 1874
9 TraesCS6B01G364800 chr6A 564973993 564976633 2640 False 816.000000 2582 88.081000 186 2726 4 chr6A.!!$F2 2540
10 TraesCS6B01G364800 chr6A 564907618 564911433 3815 True 662.283333 2676 87.047333 206 3473 6 chr6A.!!$R1 3267

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 740 0.179227 CACACACACACACACACACG 60.179 55.0 0.00 0.0 0.00 4.49 F
2264 2902 0.104934 GGGGCCTGAAGGAGGAGATA 60.105 60.0 0.84 0.0 46.33 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2294 2932 1.269958 TGCTCTCACTGTGTATGCCT 58.730 50.0 7.79 0.0 0.00 4.75 R
3247 4083 0.234884 GGCAACCGAAGAACAAGTCG 59.765 55.0 0.00 0.0 37.01 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.416631 AAAAAGAAGGGAGTACGTAGAACT 57.583 37.500 0.00 0.00 0.00 3.01
28 29 5.641783 AAAGAAGGGAGTACGTAGAACTC 57.358 43.478 8.21 8.21 42.19 3.01
29 30 4.298103 AGAAGGGAGTACGTAGAACTCA 57.702 45.455 16.60 0.00 44.25 3.41
30 31 4.857679 AGAAGGGAGTACGTAGAACTCAT 58.142 43.478 16.60 4.26 44.25 2.90
31 32 4.883006 AGAAGGGAGTACGTAGAACTCATC 59.117 45.833 16.60 11.73 44.25 2.92
32 33 4.506937 AGGGAGTACGTAGAACTCATCT 57.493 45.455 16.60 11.09 44.25 2.90
33 34 5.627182 AGGGAGTACGTAGAACTCATCTA 57.373 43.478 16.60 0.00 44.25 1.98
34 35 5.613329 AGGGAGTACGTAGAACTCATCTAG 58.387 45.833 16.60 0.00 44.25 2.43
35 36 5.366186 AGGGAGTACGTAGAACTCATCTAGA 59.634 44.000 16.60 0.00 44.25 2.43
36 37 6.043474 AGGGAGTACGTAGAACTCATCTAGAT 59.957 42.308 16.60 0.00 44.25 1.98
37 38 6.148150 GGGAGTACGTAGAACTCATCTAGATG 59.852 46.154 24.32 24.32 44.25 2.90
38 39 6.930164 GGAGTACGTAGAACTCATCTAGATGA 59.070 42.308 29.17 29.17 44.25 2.92
88 89 9.535878 TTGAAAATAAAAACAGATACAACCCAC 57.464 29.630 0.00 0.00 0.00 4.61
89 90 7.863375 TGAAAATAAAAACAGATACAACCCACG 59.137 33.333 0.00 0.00 0.00 4.94
90 91 6.887626 AATAAAAACAGATACAACCCACGT 57.112 33.333 0.00 0.00 0.00 4.49
91 92 4.823790 AAAAACAGATACAACCCACGTC 57.176 40.909 0.00 0.00 0.00 4.34
92 93 3.478857 AAACAGATACAACCCACGTCA 57.521 42.857 0.00 0.00 0.00 4.35
93 94 2.743636 ACAGATACAACCCACGTCAG 57.256 50.000 0.00 0.00 0.00 3.51
94 95 1.337823 ACAGATACAACCCACGTCAGC 60.338 52.381 0.00 0.00 0.00 4.26
95 96 0.973632 AGATACAACCCACGTCAGCA 59.026 50.000 0.00 0.00 0.00 4.41
96 97 1.076332 GATACAACCCACGTCAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
97 98 0.394938 ATACAACCCACGTCAGCACA 59.605 50.000 0.00 0.00 0.00 4.57
98 99 0.531090 TACAACCCACGTCAGCACAC 60.531 55.000 0.00 0.00 0.00 3.82
99 100 1.817520 CAACCCACGTCAGCACACA 60.818 57.895 0.00 0.00 0.00 3.72
100 101 1.817941 AACCCACGTCAGCACACAC 60.818 57.895 0.00 0.00 0.00 3.82
101 102 3.337889 CCCACGTCAGCACACACG 61.338 66.667 0.00 0.00 41.90 4.49
102 103 4.000557 CCACGTCAGCACACACGC 62.001 66.667 0.00 0.00 39.73 5.34
103 104 3.261216 CACGTCAGCACACACGCA 61.261 61.111 0.00 0.00 39.73 5.24
104 105 2.280119 ACGTCAGCACACACGCAT 60.280 55.556 0.00 0.00 39.73 4.73
105 106 2.310233 ACGTCAGCACACACGCATC 61.310 57.895 0.00 0.00 39.73 3.91
106 107 2.023771 CGTCAGCACACACGCATCT 61.024 57.895 0.00 0.00 0.00 2.90
107 108 1.560004 CGTCAGCACACACGCATCTT 61.560 55.000 0.00 0.00 0.00 2.40
108 109 1.428448 GTCAGCACACACGCATCTTA 58.572 50.000 0.00 0.00 0.00 2.10
109 110 2.002586 GTCAGCACACACGCATCTTAT 58.997 47.619 0.00 0.00 0.00 1.73
110 111 3.186909 GTCAGCACACACGCATCTTATA 58.813 45.455 0.00 0.00 0.00 0.98
111 112 3.243877 GTCAGCACACACGCATCTTATAG 59.756 47.826 0.00 0.00 0.00 1.31
112 113 2.033407 CAGCACACACGCATCTTATAGC 60.033 50.000 0.00 0.00 0.00 2.97
113 114 1.933181 GCACACACGCATCTTATAGCA 59.067 47.619 0.00 0.00 0.00 3.49
114 115 2.545526 GCACACACGCATCTTATAGCAT 59.454 45.455 0.00 0.00 0.00 3.79
115 116 3.363378 GCACACACGCATCTTATAGCATC 60.363 47.826 0.00 0.00 0.00 3.91
116 117 3.803778 CACACACGCATCTTATAGCATCA 59.196 43.478 0.00 0.00 0.00 3.07
117 118 3.804325 ACACACGCATCTTATAGCATCAC 59.196 43.478 0.00 0.00 0.00 3.06
118 119 3.803778 CACACGCATCTTATAGCATCACA 59.196 43.478 0.00 0.00 0.00 3.58
119 120 4.450080 CACACGCATCTTATAGCATCACAT 59.550 41.667 0.00 0.00 0.00 3.21
120 121 4.687948 ACACGCATCTTATAGCATCACATC 59.312 41.667 0.00 0.00 0.00 3.06
121 122 4.092529 CACGCATCTTATAGCATCACATCC 59.907 45.833 0.00 0.00 0.00 3.51
122 123 4.248058 CGCATCTTATAGCATCACATCCA 58.752 43.478 0.00 0.00 0.00 3.41
123 124 4.692155 CGCATCTTATAGCATCACATCCAA 59.308 41.667 0.00 0.00 0.00 3.53
124 125 5.353400 CGCATCTTATAGCATCACATCCAAT 59.647 40.000 0.00 0.00 0.00 3.16
125 126 6.552629 GCATCTTATAGCATCACATCCAATG 58.447 40.000 0.00 0.00 0.00 2.82
126 127 6.404403 GCATCTTATAGCATCACATCCAATGG 60.404 42.308 0.00 0.00 33.60 3.16
127 128 5.005740 TCTTATAGCATCACATCCAATGGC 58.994 41.667 0.00 0.00 33.60 4.40
128 129 3.520691 ATAGCATCACATCCAATGGCT 57.479 42.857 0.00 0.00 33.60 4.75
129 130 4.645863 ATAGCATCACATCCAATGGCTA 57.354 40.909 0.00 0.00 33.60 3.93
130 131 3.520691 AGCATCACATCCAATGGCTAT 57.479 42.857 0.00 0.00 33.60 2.97
131 132 4.645863 AGCATCACATCCAATGGCTATA 57.354 40.909 0.00 0.00 33.60 1.31
132 133 4.989277 AGCATCACATCCAATGGCTATAA 58.011 39.130 0.00 0.00 33.60 0.98
133 134 5.387788 AGCATCACATCCAATGGCTATAAA 58.612 37.500 0.00 0.00 33.60 1.40
134 135 5.834742 AGCATCACATCCAATGGCTATAAAA 59.165 36.000 0.00 0.00 33.60 1.52
135 136 6.015688 AGCATCACATCCAATGGCTATAAAAG 60.016 38.462 0.00 0.00 33.60 2.27
136 137 6.684686 CATCACATCCAATGGCTATAAAAGG 58.315 40.000 0.00 0.00 33.60 3.11
137 138 5.765510 TCACATCCAATGGCTATAAAAGGT 58.234 37.500 0.00 0.00 33.60 3.50
138 139 5.593909 TCACATCCAATGGCTATAAAAGGTG 59.406 40.000 0.00 0.00 33.60 4.00
139 140 5.593909 CACATCCAATGGCTATAAAAGGTGA 59.406 40.000 0.00 0.00 33.60 4.02
140 141 6.096705 CACATCCAATGGCTATAAAAGGTGAA 59.903 38.462 0.00 0.00 33.60 3.18
141 142 6.840705 ACATCCAATGGCTATAAAAGGTGAAT 59.159 34.615 0.00 0.00 33.60 2.57
142 143 6.713762 TCCAATGGCTATAAAAGGTGAATG 57.286 37.500 0.00 0.00 0.00 2.67
143 144 6.430864 TCCAATGGCTATAAAAGGTGAATGA 58.569 36.000 0.00 0.00 0.00 2.57
144 145 6.547141 TCCAATGGCTATAAAAGGTGAATGAG 59.453 38.462 0.00 0.00 0.00 2.90
145 146 6.547141 CCAATGGCTATAAAAGGTGAATGAGA 59.453 38.462 0.00 0.00 0.00 3.27
146 147 7.420800 CAATGGCTATAAAAGGTGAATGAGAC 58.579 38.462 0.00 0.00 0.00 3.36
147 148 5.437060 TGGCTATAAAAGGTGAATGAGACC 58.563 41.667 0.00 0.00 0.00 3.85
148 149 5.045213 TGGCTATAAAAGGTGAATGAGACCA 60.045 40.000 0.00 0.00 35.76 4.02
149 150 5.885912 GGCTATAAAAGGTGAATGAGACCAA 59.114 40.000 0.00 0.00 35.76 3.67
150 151 6.377146 GGCTATAAAAGGTGAATGAGACCAAA 59.623 38.462 0.00 0.00 35.76 3.28
151 152 7.068716 GGCTATAAAAGGTGAATGAGACCAAAT 59.931 37.037 0.00 0.00 35.76 2.32
152 153 8.470002 GCTATAAAAGGTGAATGAGACCAAATT 58.530 33.333 0.00 0.00 35.76 1.82
158 159 9.927081 AAAGGTGAATGAGACCAAATTATATCT 57.073 29.630 0.00 0.00 35.76 1.98
159 160 9.566432 AAGGTGAATGAGACCAAATTATATCTC 57.434 33.333 0.00 6.03 38.46 2.75
277 303 3.261580 TGCTCATCGAACGAATGAATGT 58.738 40.909 0.12 0.00 0.00 2.71
300 335 6.071334 TGTTCGGATATATGTTGATCTCTCCC 60.071 42.308 0.00 0.00 0.00 4.30
473 517 1.226746 AACCTGAACTGCGCAAGTAC 58.773 50.000 13.05 4.01 38.56 2.73
474 518 0.393077 ACCTGAACTGCGCAAGTACT 59.607 50.000 13.05 0.00 38.56 2.73
495 564 1.086634 GTCAGTTGCCCGCAGATCTC 61.087 60.000 0.00 0.00 0.00 2.75
508 577 2.445316 CAGATCTCACGAACTGCTACG 58.555 52.381 0.00 0.00 34.02 3.51
541 615 1.648467 GACCCTCATTTCAGTGCGCC 61.648 60.000 4.18 0.00 0.00 6.53
554 628 3.435186 GCGCCAGAGCTGAAACCC 61.435 66.667 0.00 0.00 36.60 4.11
574 656 0.387565 TTTCGGCAGCAAAACCTTCC 59.612 50.000 0.00 0.00 0.00 3.46
587 669 5.436175 CAAAACCTTCCCAATTTTCTTGGT 58.564 37.500 3.51 0.00 37.88 3.67
588 670 5.708736 AAACCTTCCCAATTTTCTTGGTT 57.291 34.783 3.51 0.00 37.88 3.67
593 675 5.934043 CCTTCCCAATTTTCTTGGTTTGATC 59.066 40.000 3.51 0.00 37.88 2.92
644 740 0.179227 CACACACACACACACACACG 60.179 55.000 0.00 0.00 0.00 4.49
658 754 2.813754 CACACACGATTCCATTTCCACT 59.186 45.455 0.00 0.00 0.00 4.00
674 852 1.822990 CCACTGCTAGAAAGGACGGTA 59.177 52.381 0.00 0.00 0.00 4.02
680 858 7.431249 CACTGCTAGAAAGGACGGTATTTATA 58.569 38.462 0.00 0.00 0.00 0.98
949 1214 1.160137 GACACACCAGCTGAATCCAC 58.840 55.000 17.39 0.00 0.00 4.02
969 1234 2.587777 ACCAGTTCTCCATCCTCCTCTA 59.412 50.000 0.00 0.00 0.00 2.43
1017 1285 1.890876 ACATGGCGAGCAAACACTTA 58.109 45.000 0.00 0.00 0.00 2.24
1110 1423 2.763448 GTGTCCTGTCTTCAGCTCCTAT 59.237 50.000 0.00 0.00 40.09 2.57
1154 1782 3.312697 GGGACTGAGTTTTGAGTTGTGAC 59.687 47.826 0.00 0.00 0.00 3.67
1211 1839 0.183492 AGCACAATGGCGGATGGTAT 59.817 50.000 0.00 0.00 39.27 2.73
1247 1875 4.796231 GTGGACGACATCGCCGCT 62.796 66.667 16.09 0.00 44.43 5.52
1388 2016 3.933722 CTGATCGGGGCGCTCCAT 61.934 66.667 29.20 18.94 37.22 3.41
1731 2359 0.527817 GGACGTGGCCAAGATCTACG 60.528 60.000 26.25 16.62 40.30 3.51
2130 2758 1.683917 GCATCGTGAGTCATCCTACCT 59.316 52.381 0.00 0.00 0.00 3.08
2264 2902 0.104934 GGGGCCTGAAGGAGGAGATA 60.105 60.000 0.84 0.00 46.33 1.98
2294 2932 1.002624 GTCAATCAGGACCCGGCAA 60.003 57.895 0.00 0.00 0.00 4.52
2627 3317 8.123575 TGTTTTCGATACTCATTTTTCGTTGAA 58.876 29.630 0.00 0.00 33.52 2.69
2699 3399 1.475930 GGCTTTGATGGTAGGAGCTCC 60.476 57.143 26.22 26.22 33.96 4.70
2739 3439 3.778265 AGGGCTCTTCTAGGATCAGATC 58.222 50.000 1.18 1.18 0.00 2.75
2770 3470 2.276740 GCAGGGGGTGAATGGGAG 59.723 66.667 0.00 0.00 0.00 4.30
2771 3471 2.616458 GCAGGGGGTGAATGGGAGT 61.616 63.158 0.00 0.00 0.00 3.85
2774 3474 1.167033 AGGGGGTGAATGGGAGTTTT 58.833 50.000 0.00 0.00 0.00 2.43
2778 3478 1.893137 GGGTGAATGGGAGTTTTGACC 59.107 52.381 0.00 0.00 0.00 4.02
2815 3629 5.351458 AGCAAGTTTTCTAGCAAAAACAGG 58.649 37.500 17.37 11.61 46.68 4.00
2820 3634 5.008316 AGTTTTCTAGCAAAAACAGGGTACG 59.992 40.000 17.37 0.00 46.68 3.67
2823 3637 5.212532 TCTAGCAAAAACAGGGTACGTAA 57.787 39.130 0.00 0.00 0.00 3.18
2829 3643 5.749588 GCAAAAACAGGGTACGTAAAACAAT 59.250 36.000 0.00 0.00 0.00 2.71
2830 3644 6.916932 GCAAAAACAGGGTACGTAAAACAATA 59.083 34.615 0.00 0.00 0.00 1.90
2834 3648 5.307204 ACAGGGTACGTAAAACAATAGCAA 58.693 37.500 0.00 0.00 0.00 3.91
2836 3650 6.262720 ACAGGGTACGTAAAACAATAGCAAAA 59.737 34.615 0.00 0.00 0.00 2.44
2914 3728 8.478877 ACATGAACAGAGGTAAATCTAAGTAGG 58.521 37.037 0.00 0.00 0.00 3.18
2946 3760 5.011533 ACAAAACTAAACATGGCATAGGCAA 59.988 36.000 0.00 0.00 42.43 4.52
2962 3776 2.556622 AGGCAACGGAATAACAAAGTGG 59.443 45.455 0.00 0.00 46.39 4.00
2977 3791 6.713762 ACAAAGTGGTCAAAATCATCTTCA 57.286 33.333 0.00 0.00 0.00 3.02
2979 3793 5.362556 AAGTGGTCAAAATCATCTTCACG 57.637 39.130 0.00 0.00 0.00 4.35
2995 3818 2.844946 TCACGGCAATCACAGAGAAAA 58.155 42.857 0.00 0.00 0.00 2.29
3020 3843 2.698797 ACAGGGAGAAGTTCTTCGAACA 59.301 45.455 6.88 0.00 0.00 3.18
3025 3848 4.307432 GGAGAAGTTCTTCGAACACATGA 58.693 43.478 6.88 0.00 0.00 3.07
3101 3927 6.652900 TGATGAAGACATATTTGTTCGACCAA 59.347 34.615 0.00 0.00 35.79 3.67
3104 3930 6.878923 TGAAGACATATTTGTTCGACCAATCT 59.121 34.615 0.00 0.00 35.79 2.40
3111 3937 3.469008 TGTTCGACCAATCTGAGTTGT 57.531 42.857 0.00 0.00 0.00 3.32
3149 3975 0.619255 TGTTTGGAGGGGCCGAGATA 60.619 55.000 0.00 0.00 40.66 1.98
3157 3983 1.913419 AGGGGCCGAGATAAAACTCAA 59.087 47.619 0.00 0.00 36.80 3.02
3247 4083 5.116069 GATCTTCGAGGTAGATCTTCACC 57.884 47.826 15.37 3.08 42.97 4.02
3276 4112 2.159382 CTTCGGTTGCCCACAATTACT 58.841 47.619 0.00 0.00 38.27 2.24
3313 4186 4.151883 ACAGACACCTAACCGGTTAAGTA 58.848 43.478 24.62 7.76 46.37 2.24
3325 4198 6.847421 ACCGGTTAAGTATCAACTAGTTCT 57.153 37.500 0.00 0.00 33.75 3.01
3329 4202 7.488471 CCGGTTAAGTATCAACTAGTTCTTCAG 59.512 40.741 4.77 0.00 33.75 3.02
3380 4253 3.753797 GCTTTGGGGTTGTTCTCTCTTAG 59.246 47.826 0.00 0.00 0.00 2.18
3381 4254 4.505039 GCTTTGGGGTTGTTCTCTCTTAGA 60.505 45.833 0.00 0.00 0.00 2.10
3383 4256 5.640158 TTGGGGTTGTTCTCTCTTAGAAA 57.360 39.130 0.00 0.00 45.78 2.52
3385 4258 5.560724 TGGGGTTGTTCTCTCTTAGAAATG 58.439 41.667 0.00 0.00 45.78 2.32
3389 4262 6.881602 GGGTTGTTCTCTCTTAGAAATGTCAT 59.118 38.462 0.00 0.00 45.78 3.06
3405 4287 1.002069 TCATGGAGGATGGGTTGCTT 58.998 50.000 0.00 0.00 32.26 3.91
3407 4289 1.753073 CATGGAGGATGGGTTGCTTTC 59.247 52.381 0.00 0.00 0.00 2.62
3412 4294 2.229784 GAGGATGGGTTGCTTTCACAAG 59.770 50.000 0.00 0.00 0.00 3.16
3435 4317 4.949856 GCTCTTGTTAATTCTCCCATGGAA 59.050 41.667 15.22 0.00 0.00 3.53
3436 4318 5.163612 GCTCTTGTTAATTCTCCCATGGAAC 60.164 44.000 15.22 8.32 0.00 3.62
3468 4350 3.580319 GGTTGGAGTGGGGTGGCT 61.580 66.667 0.00 0.00 0.00 4.75
3473 4355 1.507140 TGGAGTGGGGTGGCTATTAG 58.493 55.000 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.247861 AGTTCTACGTACTCCCTTCTTTTTATA 57.752 33.333 0.00 0.00 0.00 0.98
2 3 8.131847 AGTTCTACGTACTCCCTTCTTTTTAT 57.868 34.615 0.00 0.00 0.00 1.40
3 4 7.231317 TGAGTTCTACGTACTCCCTTCTTTTTA 59.769 37.037 13.10 0.00 41.02 1.52
4 5 6.041296 TGAGTTCTACGTACTCCCTTCTTTTT 59.959 38.462 13.10 0.00 41.02 1.94
5 6 5.537674 TGAGTTCTACGTACTCCCTTCTTTT 59.462 40.000 13.10 0.00 41.02 2.27
6 7 5.075493 TGAGTTCTACGTACTCCCTTCTTT 58.925 41.667 13.10 0.00 41.02 2.52
7 8 4.660168 TGAGTTCTACGTACTCCCTTCTT 58.340 43.478 13.10 0.00 41.02 2.52
8 9 4.298103 TGAGTTCTACGTACTCCCTTCT 57.702 45.455 13.10 0.00 41.02 2.85
9 10 4.883006 AGATGAGTTCTACGTACTCCCTTC 59.117 45.833 13.10 8.35 41.02 3.46
10 11 4.857679 AGATGAGTTCTACGTACTCCCTT 58.142 43.478 13.10 0.55 41.02 3.95
11 12 4.506937 AGATGAGTTCTACGTACTCCCT 57.493 45.455 13.10 8.27 41.02 4.20
12 13 5.609423 TCTAGATGAGTTCTACGTACTCCC 58.391 45.833 13.10 6.47 41.02 4.30
13 14 6.930164 TCATCTAGATGAGTTCTACGTACTCC 59.070 42.308 27.93 1.00 42.42 3.85
14 15 7.949903 TCATCTAGATGAGTTCTACGTACTC 57.050 40.000 27.93 9.56 42.42 2.59
62 63 9.535878 GTGGGTTGTATCTGTTTTTATTTTCAA 57.464 29.630 0.00 0.00 0.00 2.69
63 64 7.863375 CGTGGGTTGTATCTGTTTTTATTTTCA 59.137 33.333 0.00 0.00 0.00 2.69
64 65 7.863877 ACGTGGGTTGTATCTGTTTTTATTTTC 59.136 33.333 0.00 0.00 0.00 2.29
65 66 7.718525 ACGTGGGTTGTATCTGTTTTTATTTT 58.281 30.769 0.00 0.00 0.00 1.82
66 67 7.013464 TGACGTGGGTTGTATCTGTTTTTATTT 59.987 33.333 0.00 0.00 0.00 1.40
67 68 6.487331 TGACGTGGGTTGTATCTGTTTTTATT 59.513 34.615 0.00 0.00 0.00 1.40
68 69 5.998981 TGACGTGGGTTGTATCTGTTTTTAT 59.001 36.000 0.00 0.00 0.00 1.40
69 70 5.366460 TGACGTGGGTTGTATCTGTTTTTA 58.634 37.500 0.00 0.00 0.00 1.52
70 71 4.200874 TGACGTGGGTTGTATCTGTTTTT 58.799 39.130 0.00 0.00 0.00 1.94
71 72 3.811083 TGACGTGGGTTGTATCTGTTTT 58.189 40.909 0.00 0.00 0.00 2.43
72 73 3.399330 CTGACGTGGGTTGTATCTGTTT 58.601 45.455 0.00 0.00 0.00 2.83
73 74 2.870435 GCTGACGTGGGTTGTATCTGTT 60.870 50.000 0.00 0.00 0.00 3.16
74 75 1.337823 GCTGACGTGGGTTGTATCTGT 60.338 52.381 0.00 0.00 0.00 3.41
75 76 1.337728 TGCTGACGTGGGTTGTATCTG 60.338 52.381 0.00 0.00 0.00 2.90
76 77 0.973632 TGCTGACGTGGGTTGTATCT 59.026 50.000 0.00 0.00 0.00 1.98
77 78 1.076332 GTGCTGACGTGGGTTGTATC 58.924 55.000 0.00 0.00 0.00 2.24
78 79 0.394938 TGTGCTGACGTGGGTTGTAT 59.605 50.000 0.00 0.00 0.00 2.29
79 80 0.531090 GTGTGCTGACGTGGGTTGTA 60.531 55.000 0.00 0.00 0.00 2.41
80 81 1.817941 GTGTGCTGACGTGGGTTGT 60.818 57.895 0.00 0.00 0.00 3.32
81 82 1.817520 TGTGTGCTGACGTGGGTTG 60.818 57.895 0.00 0.00 0.00 3.77
82 83 1.817941 GTGTGTGCTGACGTGGGTT 60.818 57.895 0.00 0.00 0.00 4.11
83 84 2.203015 GTGTGTGCTGACGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
84 85 3.337889 CGTGTGTGCTGACGTGGG 61.338 66.667 0.00 0.00 0.00 4.61
85 86 4.000557 GCGTGTGTGCTGACGTGG 62.001 66.667 0.00 0.00 37.89 4.94
86 87 2.484631 GATGCGTGTGTGCTGACGTG 62.485 60.000 0.00 0.00 37.89 4.49
87 88 2.280119 ATGCGTGTGTGCTGACGT 60.280 55.556 0.00 0.00 37.89 4.34
88 89 1.560004 AAGATGCGTGTGTGCTGACG 61.560 55.000 0.00 0.00 38.63 4.35
89 90 1.428448 TAAGATGCGTGTGTGCTGAC 58.572 50.000 0.00 0.00 35.36 3.51
90 91 2.385013 ATAAGATGCGTGTGTGCTGA 57.615 45.000 0.00 0.00 35.36 4.26
91 92 2.033407 GCTATAAGATGCGTGTGTGCTG 60.033 50.000 0.00 0.00 35.36 4.41
92 93 2.205074 GCTATAAGATGCGTGTGTGCT 58.795 47.619 0.00 0.00 35.36 4.40
93 94 1.933181 TGCTATAAGATGCGTGTGTGC 59.067 47.619 0.00 0.00 0.00 4.57
94 95 3.803778 TGATGCTATAAGATGCGTGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
95 96 3.804325 GTGATGCTATAAGATGCGTGTGT 59.196 43.478 0.00 0.00 0.00 3.72
96 97 3.803778 TGTGATGCTATAAGATGCGTGTG 59.196 43.478 0.00 0.00 0.00 3.82
97 98 4.058721 TGTGATGCTATAAGATGCGTGT 57.941 40.909 0.00 0.00 0.00 4.49
98 99 4.092529 GGATGTGATGCTATAAGATGCGTG 59.907 45.833 0.00 0.00 0.00 5.34
99 100 4.248859 GGATGTGATGCTATAAGATGCGT 58.751 43.478 0.00 0.00 0.00 5.24
100 101 4.248058 TGGATGTGATGCTATAAGATGCG 58.752 43.478 0.00 0.00 0.00 4.73
101 102 6.404403 CCATTGGATGTGATGCTATAAGATGC 60.404 42.308 0.00 0.00 0.00 3.91
102 103 6.404403 GCCATTGGATGTGATGCTATAAGATG 60.404 42.308 6.95 0.00 0.00 2.90
103 104 5.651139 GCCATTGGATGTGATGCTATAAGAT 59.349 40.000 6.95 0.00 0.00 2.40
104 105 5.005740 GCCATTGGATGTGATGCTATAAGA 58.994 41.667 6.95 0.00 0.00 2.10
105 106 5.008331 AGCCATTGGATGTGATGCTATAAG 58.992 41.667 6.95 0.00 0.00 1.73
106 107 4.989277 AGCCATTGGATGTGATGCTATAA 58.011 39.130 6.95 0.00 0.00 0.98
107 108 4.645863 AGCCATTGGATGTGATGCTATA 57.354 40.909 6.95 0.00 0.00 1.31
108 109 3.520691 AGCCATTGGATGTGATGCTAT 57.479 42.857 6.95 0.00 0.00 2.97
109 110 4.645863 ATAGCCATTGGATGTGATGCTA 57.354 40.909 6.95 0.00 0.00 3.49
110 111 3.520691 ATAGCCATTGGATGTGATGCT 57.479 42.857 6.95 0.00 0.00 3.79
111 112 5.710513 TTTATAGCCATTGGATGTGATGC 57.289 39.130 6.95 0.00 0.00 3.91
112 113 6.266103 ACCTTTTATAGCCATTGGATGTGATG 59.734 38.462 6.95 0.00 0.00 3.07
113 114 6.266103 CACCTTTTATAGCCATTGGATGTGAT 59.734 38.462 6.95 0.00 0.00 3.06
114 115 5.593909 CACCTTTTATAGCCATTGGATGTGA 59.406 40.000 6.95 0.00 0.00 3.58
115 116 5.593909 TCACCTTTTATAGCCATTGGATGTG 59.406 40.000 6.95 2.95 0.00 3.21
116 117 5.765510 TCACCTTTTATAGCCATTGGATGT 58.234 37.500 6.95 0.10 0.00 3.06
117 118 6.713762 TTCACCTTTTATAGCCATTGGATG 57.286 37.500 6.95 0.00 0.00 3.51
118 119 7.068702 TCATTCACCTTTTATAGCCATTGGAT 58.931 34.615 6.95 1.78 0.00 3.41
119 120 6.430864 TCATTCACCTTTTATAGCCATTGGA 58.569 36.000 6.95 0.00 0.00 3.53
120 121 6.547141 TCTCATTCACCTTTTATAGCCATTGG 59.453 38.462 0.00 0.00 0.00 3.16
121 122 7.420800 GTCTCATTCACCTTTTATAGCCATTG 58.579 38.462 0.00 0.00 0.00 2.82
122 123 6.547510 GGTCTCATTCACCTTTTATAGCCATT 59.452 38.462 0.00 0.00 0.00 3.16
123 124 6.064717 GGTCTCATTCACCTTTTATAGCCAT 58.935 40.000 0.00 0.00 0.00 4.40
124 125 5.045213 TGGTCTCATTCACCTTTTATAGCCA 60.045 40.000 0.00 0.00 34.66 4.75
125 126 5.437060 TGGTCTCATTCACCTTTTATAGCC 58.563 41.667 0.00 0.00 34.66 3.93
126 127 7.391148 TTTGGTCTCATTCACCTTTTATAGC 57.609 36.000 0.00 0.00 34.66 2.97
132 133 9.927081 AGATATAATTTGGTCTCATTCACCTTT 57.073 29.630 0.00 0.00 34.66 3.11
133 134 9.566432 GAGATATAATTTGGTCTCATTCACCTT 57.434 33.333 8.11 0.00 37.60 3.50
134 135 8.717717 TGAGATATAATTTGGTCTCATTCACCT 58.282 33.333 10.50 0.00 41.40 4.00
135 136 8.908786 TGAGATATAATTTGGTCTCATTCACC 57.091 34.615 10.50 0.00 41.40 4.02
163 164 9.772973 TTTTACAGTTTTGCTAGAACTCATCTA 57.227 29.630 0.00 0.00 39.71 1.98
164 165 8.677148 TTTTACAGTTTTGCTAGAACTCATCT 57.323 30.769 0.00 0.00 42.48 2.90
165 166 9.387123 CTTTTTACAGTTTTGCTAGAACTCATC 57.613 33.333 0.00 0.00 35.26 2.92
166 167 9.120538 TCTTTTTACAGTTTTGCTAGAACTCAT 57.879 29.630 0.00 0.00 35.26 2.90
167 168 8.500753 TCTTTTTACAGTTTTGCTAGAACTCA 57.499 30.769 0.00 0.00 35.26 3.41
168 169 9.439537 CTTCTTTTTACAGTTTTGCTAGAACTC 57.560 33.333 0.00 0.00 35.26 3.01
169 170 8.406297 CCTTCTTTTTACAGTTTTGCTAGAACT 58.594 33.333 0.00 0.00 37.82 3.01
170 171 7.648112 CCCTTCTTTTTACAGTTTTGCTAGAAC 59.352 37.037 0.00 0.00 0.00 3.01
171 172 7.558444 TCCCTTCTTTTTACAGTTTTGCTAGAA 59.442 33.333 0.00 0.00 0.00 2.10
172 173 7.057894 TCCCTTCTTTTTACAGTTTTGCTAGA 58.942 34.615 0.00 0.00 0.00 2.43
173 174 7.272037 TCCCTTCTTTTTACAGTTTTGCTAG 57.728 36.000 0.00 0.00 0.00 3.42
174 175 7.833285 ATCCCTTCTTTTTACAGTTTTGCTA 57.167 32.000 0.00 0.00 0.00 3.49
175 176 6.731292 ATCCCTTCTTTTTACAGTTTTGCT 57.269 33.333 0.00 0.00 0.00 3.91
176 177 8.880878 TTTATCCCTTCTTTTTACAGTTTTGC 57.119 30.769 0.00 0.00 0.00 3.68
179 180 9.996554 CCATTTTATCCCTTCTTTTTACAGTTT 57.003 29.630 0.00 0.00 0.00 2.66
180 181 8.593679 CCCATTTTATCCCTTCTTTTTACAGTT 58.406 33.333 0.00 0.00 0.00 3.16
181 182 7.733047 ACCCATTTTATCCCTTCTTTTTACAGT 59.267 33.333 0.00 0.00 0.00 3.55
182 183 8.034804 CACCCATTTTATCCCTTCTTTTTACAG 58.965 37.037 0.00 0.00 0.00 2.74
183 184 7.730784 TCACCCATTTTATCCCTTCTTTTTACA 59.269 33.333 0.00 0.00 0.00 2.41
184 185 8.129496 TCACCCATTTTATCCCTTCTTTTTAC 57.871 34.615 0.00 0.00 0.00 2.01
277 303 5.125578 CGGGAGAGATCAACATATATCCGAA 59.874 44.000 0.00 0.00 35.22 4.30
508 577 0.179018 AGGGTCAGTTGACAAGTGCC 60.179 55.000 16.78 18.59 46.47 5.01
554 628 1.602920 GGAAGGTTTTGCTGCCGAAAG 60.603 52.381 0.00 0.00 0.00 2.62
561 635 4.707105 AGAAAATTGGGAAGGTTTTGCTG 58.293 39.130 0.00 0.00 0.00 4.41
562 636 5.125356 CAAGAAAATTGGGAAGGTTTTGCT 58.875 37.500 0.00 0.00 0.00 3.91
574 656 7.596248 CAGTGTAGATCAAACCAAGAAAATTGG 59.404 37.037 5.10 5.10 44.91 3.16
593 675 8.873830 CAACCATCATCTACTAAAACAGTGTAG 58.126 37.037 0.00 0.00 38.24 2.74
644 740 5.067023 CCTTTCTAGCAGTGGAAATGGAATC 59.933 44.000 0.00 0.00 33.14 2.52
658 754 8.092687 GGAATATAAATACCGTCCTTTCTAGCA 58.907 37.037 0.00 0.00 0.00 3.49
674 852 5.768164 CACGCCAAACTAGGGGAATATAAAT 59.232 40.000 3.96 0.00 43.81 1.40
680 858 0.696501 ACACGCCAAACTAGGGGAAT 59.303 50.000 3.96 0.00 43.81 3.01
949 1214 2.173126 AGAGGAGGATGGAGAACTGG 57.827 55.000 0.00 0.00 0.00 4.00
969 1234 1.065782 TCTCTCTAGCTGTGCTCTCGT 60.066 52.381 0.00 0.00 40.44 4.18
1017 1285 0.105913 GGAGGACGAGGAAGAGGGAT 60.106 60.000 0.00 0.00 0.00 3.85
1062 1348 3.419793 CTGAAACAGGACTTGGCCA 57.580 52.632 0.00 0.00 0.00 5.36
1211 1839 1.992557 ACCTTGCCCATCAGGAAGTTA 59.007 47.619 0.00 0.00 38.24 2.24
2130 2758 8.258007 AGAAGACCAATTTAGATACGATGAACA 58.742 33.333 0.00 0.00 0.00 3.18
2264 2902 2.363680 CCTGATTGACACTAGGCGATCT 59.636 50.000 0.00 0.00 0.00 2.75
2294 2932 1.269958 TGCTCTCACTGTGTATGCCT 58.730 50.000 7.79 0.00 0.00 4.75
2508 3185 7.609056 ACTAAAATCGTACTATGTGGACAACT 58.391 34.615 0.00 0.00 0.00 3.16
2699 3399 3.004734 CCCTAATCCTTAATGCAAAGGCG 59.995 47.826 11.71 1.82 44.89 5.52
2739 3439 4.101448 CTGCCCCTTCTGGTCGGG 62.101 72.222 0.00 0.00 40.29 5.14
2754 3454 0.409484 AAACTCCCATTCACCCCCTG 59.591 55.000 0.00 0.00 0.00 4.45
2793 3493 4.507756 CCCTGTTTTTGCTAGAAAACTTGC 59.492 41.667 16.42 0.00 45.32 4.01
2794 3494 5.660460 ACCCTGTTTTTGCTAGAAAACTTG 58.340 37.500 16.42 11.07 45.32 3.16
2795 3495 5.932619 ACCCTGTTTTTGCTAGAAAACTT 57.067 34.783 16.42 1.96 45.32 2.66
2796 3496 5.008316 CGTACCCTGTTTTTGCTAGAAAACT 59.992 40.000 16.42 4.07 45.32 2.66
2797 3497 5.209977 CGTACCCTGTTTTTGCTAGAAAAC 58.790 41.667 11.14 11.14 45.31 2.43
2802 3616 5.927954 TTTACGTACCCTGTTTTTGCTAG 57.072 39.130 0.00 0.00 0.00 3.42
2803 3617 5.587844 TGTTTTACGTACCCTGTTTTTGCTA 59.412 36.000 0.00 0.00 0.00 3.49
2815 3629 7.354257 TCTGTTTTGCTATTGTTTTACGTACC 58.646 34.615 0.00 0.00 0.00 3.34
2888 3702 8.478877 CCTACTTAGATTTACCTCTGTTCATGT 58.521 37.037 0.00 0.00 0.00 3.21
2889 3703 8.696374 TCCTACTTAGATTTACCTCTGTTCATG 58.304 37.037 0.00 0.00 0.00 3.07
2890 3704 8.840200 TCCTACTTAGATTTACCTCTGTTCAT 57.160 34.615 0.00 0.00 0.00 2.57
2891 3705 8.660295 TTCCTACTTAGATTTACCTCTGTTCA 57.340 34.615 0.00 0.00 0.00 3.18
2892 3706 9.535878 CATTCCTACTTAGATTTACCTCTGTTC 57.464 37.037 0.00 0.00 0.00 3.18
2893 3707 7.988028 GCATTCCTACTTAGATTTACCTCTGTT 59.012 37.037 0.00 0.00 0.00 3.16
2894 3708 7.125811 TGCATTCCTACTTAGATTTACCTCTGT 59.874 37.037 0.00 0.00 0.00 3.41
2895 3709 7.439655 GTGCATTCCTACTTAGATTTACCTCTG 59.560 40.741 0.00 0.00 0.00 3.35
2896 3710 7.125811 TGTGCATTCCTACTTAGATTTACCTCT 59.874 37.037 0.00 0.00 0.00 3.69
2902 3716 7.759489 TTTGTGTGCATTCCTACTTAGATTT 57.241 32.000 0.00 0.00 0.00 2.17
2914 3728 5.333263 GCCATGTTTAGTTTTGTGTGCATTC 60.333 40.000 0.00 0.00 0.00 2.67
2946 3760 5.838531 TTTTGACCACTTTGTTATTCCGT 57.161 34.783 0.00 0.00 0.00 4.69
2962 3776 3.829886 TGCCGTGAAGATGATTTTGAC 57.170 42.857 0.00 0.00 0.00 3.18
2995 3818 3.641906 TCGAAGAACTTCTCCCTGTCTTT 59.358 43.478 11.85 0.00 37.44 2.52
3001 3824 2.698797 TGTGTTCGAAGAACTTCTCCCT 59.301 45.455 13.17 0.00 45.90 4.20
3057 3881 9.630098 CTTCATCAAGCTTACATGTATTTTTGT 57.370 29.630 6.36 1.26 0.00 2.83
3058 3882 9.844790 TCTTCATCAAGCTTACATGTATTTTTG 57.155 29.630 6.36 10.97 0.00 2.44
3064 3888 9.836864 AATATGTCTTCATCAAGCTTACATGTA 57.163 29.630 15.71 0.08 35.70 2.29
3065 3889 8.743085 AATATGTCTTCATCAAGCTTACATGT 57.257 30.769 15.71 2.69 35.70 3.21
3111 3937 2.299013 ACAGATCGTAGAGTTGTGCCAA 59.701 45.455 0.00 0.00 43.63 4.52
3125 3951 1.452108 GGCCCCTCCAAACAGATCG 60.452 63.158 0.00 0.00 34.01 3.69
3206 4032 3.850122 TCTACACGAGTGATTGAGTGG 57.150 47.619 10.50 0.00 38.78 4.00
3234 4061 3.870633 ACAAGTCGGTGAAGATCTACC 57.129 47.619 4.75 4.75 0.00 3.18
3247 4083 0.234884 GGCAACCGAAGAACAAGTCG 59.765 55.000 0.00 0.00 37.01 4.18
3276 4112 1.467734 GTCTGTTCTAAGCGTCCGAGA 59.532 52.381 0.00 0.00 0.00 4.04
3313 4186 6.047511 AGCATCACTGAAGAACTAGTTGAT 57.952 37.500 14.14 5.49 0.00 2.57
3345 4218 1.539827 CCCAAAGCCTAAAACCTGTCG 59.460 52.381 0.00 0.00 0.00 4.35
3346 4219 1.893137 CCCCAAAGCCTAAAACCTGTC 59.107 52.381 0.00 0.00 0.00 3.51
3347 4220 1.219469 ACCCCAAAGCCTAAAACCTGT 59.781 47.619 0.00 0.00 0.00 4.00
3350 4223 2.043992 ACAACCCCAAAGCCTAAAACC 58.956 47.619 0.00 0.00 0.00 3.27
3380 4253 3.303351 ACCCATCCTCCATGACATTTC 57.697 47.619 0.00 0.00 33.80 2.17
3381 4254 3.368248 CAACCCATCCTCCATGACATTT 58.632 45.455 0.00 0.00 33.80 2.32
3383 4256 1.410648 GCAACCCATCCTCCATGACAT 60.411 52.381 0.00 0.00 33.80 3.06
3385 4258 0.257039 AGCAACCCATCCTCCATGAC 59.743 55.000 0.00 0.00 33.80 3.06
3389 4262 0.776810 TGAAAGCAACCCATCCTCCA 59.223 50.000 0.00 0.00 0.00 3.86
3412 4294 4.526970 TCCATGGGAGAATTAACAAGAGC 58.473 43.478 13.02 0.00 0.00 4.09
3420 4302 6.159575 TGGTTATCTGTTCCATGGGAGAATTA 59.840 38.462 13.02 0.00 31.21 1.40
3422 4304 4.478317 TGGTTATCTGTTCCATGGGAGAAT 59.522 41.667 13.02 1.20 31.21 2.40
3428 4310 4.588899 TGAACTGGTTATCTGTTCCATGG 58.411 43.478 4.97 4.97 46.90 3.66
3429 4311 4.637534 CCTGAACTGGTTATCTGTTCCATG 59.362 45.833 11.68 3.85 46.90 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.