Multiple sequence alignment - TraesCS6B01G364000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G364000 chr6B 100.000 6233 0 0 1 6233 635167431 635173663 0.000000e+00 11511.0
1 TraesCS6B01G364000 chr6A 90.261 4333 251 61 23 4261 564715191 564719446 0.000000e+00 5505.0
2 TraesCS6B01G364000 chr6A 88.955 842 42 18 4495 5312 564719678 564720492 0.000000e+00 992.0
3 TraesCS6B01G364000 chr6A 86.460 613 50 14 5473 6067 564720923 564721520 5.270000e-180 641.0
4 TraesCS6B01G364000 chr6A 91.892 185 11 3 4306 4487 564719449 564719632 8.020000e-64 255.0
5 TraesCS6B01G364000 chr6A 85.965 171 10 6 5321 5481 564720538 564720704 2.990000e-38 171.0
6 TraesCS6B01G364000 chr6D 91.753 2413 137 26 2122 4487 421881205 421883602 0.000000e+00 3297.0
7 TraesCS6B01G364000 chr6D 87.992 2082 103 61 28 2030 421879161 421881174 0.000000e+00 2324.0
8 TraesCS6B01G364000 chr6D 87.101 1690 103 53 4495 6124 421883648 421885282 0.000000e+00 1807.0
9 TraesCS6B01G364000 chr7D 86.826 167 18 4 1094 1258 123653640 123653804 3.840000e-42 183.0
10 TraesCS6B01G364000 chr7D 89.116 147 12 2 5141 5287 564576001 564575859 4.960000e-41 180.0
11 TraesCS6B01G364000 chr7A 86.826 167 18 4 1094 1258 126576870 126577034 3.840000e-42 183.0
12 TraesCS6B01G364000 chr2A 89.041 146 12 2 5141 5286 745314356 745314215 1.790000e-40 178.0
13 TraesCS6B01G364000 chr2A 90.000 60 6 0 1818 1877 749904119 749904060 1.860000e-10 78.7
14 TraesCS6B01G364000 chr2A 89.474 57 5 1 1805 1861 749910180 749910125 3.120000e-08 71.3
15 TraesCS6B01G364000 chr7B 88.435 147 13 2 5141 5287 285346145 285346003 2.310000e-39 174.0
16 TraesCS6B01G364000 chr7B 90.625 128 10 2 1094 1220 85128034 85128160 1.070000e-37 169.0
17 TraesCS6B01G364000 chr3B 87.755 147 14 2 5141 5287 17901633 17901491 1.070000e-37 169.0
18 TraesCS6B01G364000 chr2B 81.879 149 11 5 5141 5287 18085302 18085436 1.840000e-20 111.0
19 TraesCS6B01G364000 chr2D 90.000 60 6 0 1818 1877 619046369 619046310 1.860000e-10 78.7
20 TraesCS6B01G364000 chr2D 87.931 58 7 0 1818 1875 619052779 619052722 1.120000e-07 69.4
21 TraesCS6B01G364000 chr4D 93.182 44 3 0 1820 1863 493017012 493017055 1.450000e-06 65.8
22 TraesCS6B01G364000 chr4D 92.683 41 2 1 2023 2062 418387282 418387242 2.430000e-04 58.4
23 TraesCS6B01G364000 chr4B 93.182 44 3 0 1820 1863 631608677 631608634 1.450000e-06 65.8
24 TraesCS6B01G364000 chr3D 96.875 32 0 1 2032 2063 424889061 424889031 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G364000 chr6B 635167431 635173663 6232 False 11511.0 11511 100.000000 1 6233 1 chr6B.!!$F1 6232
1 TraesCS6B01G364000 chr6A 564715191 564721520 6329 False 1512.8 5505 88.706600 23 6067 5 chr6A.!!$F1 6044
2 TraesCS6B01G364000 chr6D 421879161 421885282 6121 False 2476.0 3297 88.948667 28 6124 3 chr6D.!!$F1 6096

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
755 782 0.654683 CAATCGCTCCTTGTAGCAGC 59.345 55.000 0.00 0.00 42.91 5.25 F
967 1011 0.800300 CTCTCACTCGAGGCGCTTTC 60.800 60.000 18.41 4.74 39.95 2.62 F
1197 1269 1.450312 CCTCCGCAACATCTGGACC 60.450 63.158 0.00 0.00 0.00 4.46 F
2271 2376 0.109272 TTGCCGTCGAGCTTCTGTAG 60.109 55.000 0.00 0.00 0.00 2.74 F
3260 3387 0.593128 ATTGCAAGCGACCTGTCAAC 59.407 50.000 4.94 0.00 0.00 3.18 F
4154 4297 0.546747 TTAGGGGCTGGTACTGTGCT 60.547 55.000 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1686 1776 1.142314 GCCGTAGCCGTTGGACATA 59.858 57.895 0.00 0.0 0.00 2.29 R
2245 2350 1.374252 GCTCGACGGCAAGGAGAAA 60.374 57.895 0.00 0.0 0.00 2.52 R
2731 2841 1.993956 TTGTTAACTGCTGCCATGGT 58.006 45.000 14.67 0.0 0.00 3.55 R
3819 3960 0.108585 TTGAGCGGCTCTTTCAACCT 59.891 50.000 28.42 0.0 0.00 3.50 R
4218 4370 0.392706 TCAAGAACGAGCAGCAGGAA 59.607 50.000 0.00 0.0 0.00 3.36 R
5490 5978 0.110104 AGCCCATATGAAGCTCCAGC 59.890 55.000 12.82 0.0 42.49 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.779506 AGGATTCGTTCAAACTGTCCC 58.220 47.619 0.00 0.00 0.00 4.46
21 22 2.105821 AGGATTCGTTCAAACTGTCCCA 59.894 45.455 0.00 0.00 0.00 4.37
26 27 1.152830 TTCAAACTGTCCCAGGCCC 59.847 57.895 0.00 0.00 35.51 5.80
76 77 2.046892 GTCAGCCCATCGCACACT 60.047 61.111 0.00 0.00 41.38 3.55
240 242 4.781616 TCGCCACCCATCCCCGTA 62.782 66.667 0.00 0.00 0.00 4.02
241 243 4.540735 CGCCACCCATCCCCGTAC 62.541 72.222 0.00 0.00 0.00 3.67
355 360 3.485745 CACCCACCCCCGTATCCC 61.486 72.222 0.00 0.00 0.00 3.85
460 466 4.504916 CCGAGCAGCGACAGGAGG 62.505 72.222 0.21 0.00 44.57 4.30
610 617 1.008767 TTTTAAAACGCACCGGCCG 60.009 52.632 21.04 21.04 36.38 6.13
611 618 3.539560 TTTAAAACGCACCGGCCGC 62.540 57.895 22.85 5.07 36.38 6.53
633 650 2.358737 GCCAACACCTGTCCTCCG 60.359 66.667 0.00 0.00 0.00 4.63
716 743 2.041081 ACCTCCGATCTCTATCCCTCTG 59.959 54.545 0.00 0.00 0.00 3.35
724 751 5.186992 CGATCTCTATCCCTCTGTCTCTCTA 59.813 48.000 0.00 0.00 0.00 2.43
755 782 0.654683 CAATCGCTCCTTGTAGCAGC 59.345 55.000 0.00 0.00 42.91 5.25
858 887 4.358914 CTGGTTTAAAGCAGCTCGAGCG 62.359 54.545 28.71 24.66 46.01 5.03
913 942 1.511305 CATCACGAGTACCACGGCT 59.489 57.895 13.15 0.00 34.93 5.52
967 1011 0.800300 CTCTCACTCGAGGCGCTTTC 60.800 60.000 18.41 4.74 39.95 2.62
1197 1269 1.450312 CCTCCGCAACATCTGGACC 60.450 63.158 0.00 0.00 0.00 4.46
1638 1719 3.023045 ATACGGCCAGGGAGGAGGT 62.023 63.158 2.24 0.00 41.22 3.85
1763 1853 4.440802 GCCACCGATGCCATATGTTTTTAA 60.441 41.667 1.24 0.00 0.00 1.52
1767 1857 4.201970 CCGATGCCATATGTTTTTAACGGT 60.202 41.667 1.24 0.00 0.00 4.83
1824 1914 4.863925 GTCGAGAGGAGGCAGCGC 62.864 72.222 0.00 0.00 0.00 5.92
1887 1977 5.278660 CCAGAGGAAACAGGTGAAAATTCTG 60.279 44.000 0.00 0.00 34.91 3.02
1910 2008 4.443913 TGCTATCGTGCTGTTACTGTAA 57.556 40.909 0.00 0.00 0.00 2.41
1915 2013 7.009815 TGCTATCGTGCTGTTACTGTAAATAAC 59.990 37.037 1.10 0.00 33.85 1.89
1921 2019 8.012809 CGTGCTGTTACTGTAAATAACAAATCA 58.987 33.333 1.10 0.00 40.94 2.57
1966 2064 1.737236 ACACGTGTTGCGCAATCATAT 59.263 42.857 27.79 14.17 46.11 1.78
1967 2065 2.933260 ACACGTGTTGCGCAATCATATA 59.067 40.909 27.79 0.00 46.11 0.86
1968 2066 3.242284 ACACGTGTTGCGCAATCATATAC 60.242 43.478 27.79 12.87 46.11 1.47
1969 2067 2.933260 ACGTGTTGCGCAATCATATACA 59.067 40.909 27.79 15.64 46.11 2.29
1970 2068 3.001228 ACGTGTTGCGCAATCATATACAG 59.999 43.478 27.79 13.53 46.11 2.74
2050 2148 4.895961 AGCTACTCCCTCTGTAAACAAAC 58.104 43.478 0.00 0.00 0.00 2.93
2051 2149 3.678548 GCTACTCCCTCTGTAAACAAACG 59.321 47.826 0.00 0.00 0.00 3.60
2053 2151 4.942761 ACTCCCTCTGTAAACAAACGTA 57.057 40.909 0.00 0.00 0.00 3.57
2054 2152 5.280654 ACTCCCTCTGTAAACAAACGTAA 57.719 39.130 0.00 0.00 0.00 3.18
2056 2154 5.069516 ACTCCCTCTGTAAACAAACGTAAGA 59.930 40.000 0.00 0.00 43.62 2.10
2057 2155 5.291971 TCCCTCTGTAAACAAACGTAAGAC 58.708 41.667 0.00 0.00 43.62 3.01
2072 2174 4.171005 CGTAAGACGCTTTACAGATGGAA 58.829 43.478 9.47 0.00 43.02 3.53
2076 2178 4.745649 AGACGCTTTACAGATGGAAGTAC 58.254 43.478 0.00 0.00 0.00 2.73
2105 2207 7.505258 AGAATAGAACAAAGGATTAGAGCCTC 58.495 38.462 0.00 0.00 33.76 4.70
2181 2283 8.352137 ACAAAGGATACAAACATGAATGATCA 57.648 30.769 0.00 0.00 38.75 2.92
2199 2303 2.325082 ATGTTTGCAGCCGTCGTCC 61.325 57.895 0.00 0.00 0.00 4.79
2200 2304 3.723348 GTTTGCAGCCGTCGTCCC 61.723 66.667 0.00 0.00 0.00 4.46
2245 2350 8.784043 GTGAGAACAATTTCTAACACCAATAGT 58.216 33.333 0.00 0.00 42.53 2.12
2271 2376 0.109272 TTGCCGTCGAGCTTCTGTAG 60.109 55.000 0.00 0.00 0.00 2.74
2299 2404 9.613428 CCTTGGATAATCGATATTGGCTAAATA 57.387 33.333 0.00 0.00 35.21 1.40
2310 2415 7.094634 CGATATTGGCTAAATATGTGCCTTCTT 60.095 37.037 12.94 0.23 46.23 2.52
2434 2542 6.981559 TGGCCACTTTTCTTGTTTAATTGTAC 59.018 34.615 0.00 0.00 0.00 2.90
2435 2543 7.147811 TGGCCACTTTTCTTGTTTAATTGTACT 60.148 33.333 0.00 0.00 0.00 2.73
2436 2544 7.709182 GGCCACTTTTCTTGTTTAATTGTACTT 59.291 33.333 0.00 0.00 0.00 2.24
2437 2545 8.539674 GCCACTTTTCTTGTTTAATTGTACTTG 58.460 33.333 0.00 0.00 0.00 3.16
2438 2546 9.581099 CCACTTTTCTTGTTTAATTGTACTTGT 57.419 29.630 0.00 0.00 0.00 3.16
2458 2566 4.487948 TGTATTGTACAGTACTTCGGCAC 58.512 43.478 23.90 3.93 34.06 5.01
2486 2594 6.292596 CGCATTCTAGCAGTCCTTTCTATTTC 60.293 42.308 0.00 0.00 0.00 2.17
2535 2643 9.519191 TCACCTCAATAAATCAGAGAAAAATCA 57.481 29.630 0.00 0.00 0.00 2.57
2558 2666 8.075761 TCAGGATGATCACTATCTGGATATTG 57.924 38.462 0.00 2.75 42.56 1.90
2604 2712 2.289010 ACCCTGCAGCATTTAACAAAGC 60.289 45.455 8.66 0.00 0.00 3.51
2636 2744 6.814506 ATCAAAGAGAGAACAAATCACAGG 57.185 37.500 0.00 0.00 0.00 4.00
2639 2747 7.679783 TCAAAGAGAGAACAAATCACAGGATA 58.320 34.615 0.00 0.00 32.09 2.59
2669 2777 8.148351 TCAACTACAAGTCTAAATACAGCAAGT 58.852 33.333 0.00 0.00 0.00 3.16
2672 2780 7.931948 ACTACAAGTCTAAATACAGCAAGTGTT 59.068 33.333 0.00 0.00 40.94 3.32
2673 2781 7.568199 ACAAGTCTAAATACAGCAAGTGTTT 57.432 32.000 8.59 8.59 43.00 2.83
2732 2842 8.245701 TGTGAATTTCCACAAAACTAAAACAC 57.754 30.769 0.00 0.00 43.32 3.32
2738 2848 3.807071 CCACAAAACTAAAACACCATGGC 59.193 43.478 13.04 0.00 0.00 4.40
2804 2914 5.997746 ACTTCAGTGCTAAGTATTTTGCTCA 59.002 36.000 6.04 0.00 35.44 4.26
2871 2981 5.859495 AGACCTAGATTAACTATGGCTTGC 58.141 41.667 0.00 0.00 32.45 4.01
2992 3102 5.057149 GTCTGTCACTGTTCTGTTACCATT 58.943 41.667 0.00 0.00 0.00 3.16
3067 3177 5.351948 AGATCCTAGAGAGGCAAAAGAAC 57.648 43.478 0.00 0.00 43.40 3.01
3099 3209 4.892934 TGCCTACCATTTTGAAGAAACTGT 59.107 37.500 0.00 0.00 0.00 3.55
3105 3215 9.364989 CTACCATTTTGAAGAAACTGTTTTTGA 57.635 29.630 7.28 0.00 0.00 2.69
3170 3281 2.027745 CAGAACTGACCAGCCTATGTGT 60.028 50.000 0.00 0.00 0.00 3.72
3260 3387 0.593128 ATTGCAAGCGACCTGTCAAC 59.407 50.000 4.94 0.00 0.00 3.18
3261 3388 0.746204 TTGCAAGCGACCTGTCAACA 60.746 50.000 0.00 0.00 0.00 3.33
3270 3397 3.486375 GCGACCTGTCAACATCATGAATG 60.486 47.826 0.00 1.45 41.48 2.67
3308 3435 5.186215 TGATGCATGGTTTGATTCATCAACT 59.814 36.000 2.46 0.00 45.63 3.16
3309 3436 4.811908 TGCATGGTTTGATTCATCAACTG 58.188 39.130 1.52 0.47 45.63 3.16
3348 3475 3.963428 AGCTCTCGAAACTTGTGGTAT 57.037 42.857 0.00 0.00 0.00 2.73
3358 3485 7.604549 TCGAAACTTGTGGTATTGATACACTA 58.395 34.615 3.77 0.00 34.98 2.74
3406 3535 6.039159 TCTGATTGACAGCTACTGATGTAGAG 59.961 42.308 7.32 2.08 43.46 2.43
3407 3536 5.654209 TGATTGACAGCTACTGATGTAGAGT 59.346 40.000 7.32 4.85 46.76 3.24
3435 3571 8.985805 AGGTTTTCTTAACGTATACTTGACTTG 58.014 33.333 0.56 0.00 0.00 3.16
3448 3584 3.684788 ACTTGACTTGACAATGCCGTATC 59.315 43.478 0.00 0.00 0.00 2.24
3451 3587 3.123804 GACTTGACAATGCCGTATCGAT 58.876 45.455 2.16 2.16 0.00 3.59
3452 3588 2.866156 ACTTGACAATGCCGTATCGATG 59.134 45.455 8.54 0.00 0.00 3.84
3546 3682 0.978907 ACAGGGGTTAGGTGGTAACG 59.021 55.000 0.00 0.00 41.93 3.18
3555 3691 5.296748 GGTTAGGTGGTAACGTTTAAGTGA 58.703 41.667 5.91 0.00 41.93 3.41
3604 3740 2.181125 TGATTGGCCAACTGCAATGAT 58.819 42.857 23.27 0.01 43.89 2.45
3646 3782 9.778741 TCATCTATTGACCCAAGTATTGTATTC 57.221 33.333 0.00 0.00 46.99 1.75
3725 3863 9.562408 TGTTACTTTGTTCATCTGTATTACCAA 57.438 29.630 0.00 0.00 0.00 3.67
3771 3910 7.968405 GGAGTAAACAAATTATACAAGTGCAGG 59.032 37.037 0.00 0.00 0.00 4.85
3772 3911 7.312899 AGTAAACAAATTATACAAGTGCAGGC 58.687 34.615 0.00 0.00 0.00 4.85
3778 3917 6.699575 AATTATACAAGTGCAGGCTTTAGG 57.300 37.500 0.00 0.00 0.00 2.69
3814 3955 8.402326 TGTGTGTCGTCAACTATATATGTTTC 57.598 34.615 0.00 0.00 0.00 2.78
3815 3956 8.248253 TGTGTGTCGTCAACTATATATGTTTCT 58.752 33.333 0.00 0.00 0.00 2.52
3832 3973 5.003804 TGTTTCTATCAGGTTGAAAGAGCC 58.996 41.667 0.00 0.00 33.33 4.70
3834 3975 1.936547 CTATCAGGTTGAAAGAGCCGC 59.063 52.381 0.00 0.00 0.00 6.53
3853 3994 2.958355 CGCTCAATTGTATTTCCCCCAT 59.042 45.455 5.13 0.00 0.00 4.00
3994 4137 3.567164 GCCACTTTCATCATGATACCCTG 59.433 47.826 8.15 0.00 0.00 4.45
4032 4175 1.804151 TCCATCGTTTTCCAGCTTTCG 59.196 47.619 0.00 0.00 0.00 3.46
4154 4297 0.546747 TTAGGGGCTGGTACTGTGCT 60.547 55.000 0.00 0.00 0.00 4.40
4155 4298 1.264749 TAGGGGCTGGTACTGTGCTG 61.265 60.000 0.00 0.00 0.00 4.41
4164 4316 4.319549 GCTGGTACTGTGCTGTTCTTTAAC 60.320 45.833 0.00 0.00 36.07 2.01
4168 4320 5.758784 GGTACTGTGCTGTTCTTTAACTTCT 59.241 40.000 0.00 0.00 36.51 2.85
4218 4370 5.011090 TCTTCTAATAGAATGCGCAGTGT 57.989 39.130 18.12 15.44 33.13 3.55
4273 4425 9.476202 AGAAAAATAGTTACCTGCACATTTTTC 57.524 29.630 16.70 16.70 44.69 2.29
4274 4426 9.255304 GAAAAATAGTTACCTGCACATTTTTCA 57.745 29.630 18.37 0.00 44.25 2.69
4282 4434 4.202050 ACCTGCACATTTTTCACTGAACTC 60.202 41.667 0.00 0.00 0.00 3.01
4288 4440 6.292488 GCACATTTTTCACTGAACTCCATTTG 60.292 38.462 0.00 0.00 0.00 2.32
4302 4454 4.279169 ACTCCATTTGGAAGTTCACACATG 59.721 41.667 5.01 8.81 44.91 3.21
4304 4456 4.520111 TCCATTTGGAAGTTCACACATGAG 59.480 41.667 16.01 0.00 42.18 2.90
4305 4457 4.520111 CCATTTGGAAGTTCACACATGAGA 59.480 41.667 16.01 0.00 34.75 3.27
4306 4458 5.184479 CCATTTGGAAGTTCACACATGAGAT 59.816 40.000 16.01 0.00 34.75 2.75
4307 4459 5.947228 TTTGGAAGTTCACACATGAGATC 57.053 39.130 5.01 0.00 35.83 2.75
4314 4466 7.768120 GGAAGTTCACACATGAGATCTTATCTT 59.232 37.037 5.01 0.00 40.38 2.40
4369 4521 3.839323 TTAGGACAGGGACCTTCTGTA 57.161 47.619 3.62 0.00 44.51 2.74
4373 4525 3.916989 AGGACAGGGACCTTCTGTATTTT 59.083 43.478 3.62 0.00 44.51 1.82
4423 4576 5.420739 TGCCAAAATAAAGGTTATGGTCTCC 59.579 40.000 0.00 0.00 0.00 3.71
4429 4582 3.502051 AAGGTTATGGTCTCCCACCTA 57.498 47.619 0.00 0.00 46.98 3.08
4440 4593 4.344390 GGTCTCCCACCTATTTCTCGTTAT 59.656 45.833 0.00 0.00 42.84 1.89
4487 4640 2.964464 TCTTTTGTGCATGTTGACCCAT 59.036 40.909 0.00 0.00 0.00 4.00
4488 4641 2.816204 TTTGTGCATGTTGACCCATG 57.184 45.000 0.00 0.00 44.07 3.66
4512 4703 7.255569 TGTAACAGTTCCACTCTATACAATCG 58.744 38.462 0.00 0.00 0.00 3.34
4533 4724 7.645058 ATCGTGTTTCATTCATAGGGAAAAT 57.355 32.000 0.00 0.00 39.39 1.82
4561 4752 2.159382 CTTCTGCCGTAATTTGGTGGT 58.841 47.619 0.00 0.00 0.00 4.16
4562 4753 3.244630 ACTTCTGCCGTAATTTGGTGGTA 60.245 43.478 0.00 0.00 0.00 3.25
4563 4754 2.702261 TCTGCCGTAATTTGGTGGTAC 58.298 47.619 0.00 0.00 0.00 3.34
4564 4755 2.303600 TCTGCCGTAATTTGGTGGTACT 59.696 45.455 0.00 0.00 0.00 2.73
4565 4756 2.676342 CTGCCGTAATTTGGTGGTACTC 59.324 50.000 0.00 0.00 0.00 2.59
4566 4757 2.011947 GCCGTAATTTGGTGGTACTCC 58.988 52.381 0.00 0.00 43.26 3.85
4567 4758 2.355412 GCCGTAATTTGGTGGTACTCCT 60.355 50.000 8.56 0.00 43.38 3.69
4568 4759 3.118665 GCCGTAATTTGGTGGTACTCCTA 60.119 47.826 8.56 0.06 43.38 2.94
4569 4760 4.690122 CCGTAATTTGGTGGTACTCCTAG 58.310 47.826 8.56 0.00 43.38 3.02
4570 4761 4.403432 CCGTAATTTGGTGGTACTCCTAGA 59.597 45.833 0.00 0.00 43.38 2.43
4571 4762 5.451520 CCGTAATTTGGTGGTACTCCTAGAG 60.452 48.000 0.00 0.00 43.38 2.43
4612 4803 7.703328 TGTTTTGCTGTTCCTAGTTAAAAGAG 58.297 34.615 0.00 0.00 0.00 2.85
4622 4824 7.133133 TCCTAGTTAAAAGAGTCCACTGTTT 57.867 36.000 0.00 0.00 40.59 2.83
4673 4875 0.320374 TGCCTCGTTACACTTCAGGG 59.680 55.000 0.00 0.00 0.00 4.45
4708 4911 4.092383 CCCTAACGTAATTTCTGAACGGTG 59.908 45.833 0.74 0.00 40.81 4.94
4710 4913 4.720530 AACGTAATTTCTGAACGGTGTC 57.279 40.909 4.84 0.00 40.81 3.67
4822 5025 1.204941 AGGCCTGTAAACTAGAGCACG 59.795 52.381 3.11 0.00 0.00 5.34
4858 5061 3.676172 TGCGCGGTTTATATACATACAGC 59.324 43.478 8.83 0.00 0.00 4.40
4918 5121 0.463295 AGCCACTGATCCGATGCTTG 60.463 55.000 0.00 0.00 0.00 4.01
4925 5128 2.864946 CTGATCCGATGCTTGAGAGTTG 59.135 50.000 0.00 0.00 0.00 3.16
5056 5260 2.766313 TGTGTTGGTGAGATACTGCAC 58.234 47.619 0.00 0.00 0.00 4.57
5063 5267 3.447586 TGGTGAGATACTGCACTAGAACC 59.552 47.826 0.00 0.00 35.43 3.62
5074 5278 7.182817 ACTGCACTAGAACCACATTTCTATA 57.817 36.000 0.00 0.00 37.44 1.31
5076 5280 8.924303 ACTGCACTAGAACCACATTTCTATATA 58.076 33.333 0.00 0.00 37.44 0.86
5095 5299 9.477484 TCTATATATTTTTCTGTTTCGAGAGGC 57.523 33.333 0.00 0.00 0.00 4.70
5096 5300 9.482627 CTATATATTTTTCTGTTTCGAGAGGCT 57.517 33.333 0.00 0.00 0.00 4.58
5097 5301 6.670077 ATATTTTTCTGTTTCGAGAGGCTC 57.330 37.500 6.34 6.34 0.00 4.70
5098 5302 3.469008 TTTTCTGTTTCGAGAGGCTCA 57.531 42.857 18.26 0.00 0.00 4.26
5100 5304 3.685139 TTCTGTTTCGAGAGGCTCATT 57.315 42.857 18.26 0.00 0.00 2.57
5147 5353 5.883115 TGTATTCTTCATAAAACGATGCCCA 59.117 36.000 0.00 0.00 0.00 5.36
5180 5386 2.017049 AGCGGAACTATTTGTGCATCC 58.983 47.619 0.00 0.00 0.00 3.51
5200 5406 6.699575 ATCCGTAGATGATTTCCCTTTTTG 57.300 37.500 0.00 0.00 0.00 2.44
5201 5407 5.566469 TCCGTAGATGATTTCCCTTTTTGT 58.434 37.500 0.00 0.00 0.00 2.83
5220 5438 4.736126 TGTGAGAGTGAACTGAACTGAA 57.264 40.909 0.00 0.00 0.00 3.02
5247 5465 6.058183 ACTTTGCAGAGTAAAGAAGATGTGT 58.942 36.000 8.37 0.00 38.26 3.72
5260 5478 1.632409 AGATGTGTTGTCTGATGGGCT 59.368 47.619 0.00 0.00 0.00 5.19
5322 5556 6.787085 AAACCGAACTAGTTTGATTCTCTG 57.213 37.500 22.34 7.74 36.13 3.35
5323 5557 5.470047 ACCGAACTAGTTTGATTCTCTGT 57.530 39.130 22.34 8.32 0.00 3.41
5324 5558 6.585695 ACCGAACTAGTTTGATTCTCTGTA 57.414 37.500 22.34 0.00 0.00 2.74
5325 5559 6.622549 ACCGAACTAGTTTGATTCTCTGTAG 58.377 40.000 22.34 5.81 0.00 2.74
5326 5560 6.037098 CCGAACTAGTTTGATTCTCTGTAGG 58.963 44.000 22.34 0.00 0.00 3.18
5327 5561 5.517054 CGAACTAGTTTGATTCTCTGTAGGC 59.483 44.000 16.75 0.00 0.00 3.93
5407 5666 5.986741 TGTACTGTATACATAAACCATGGCG 59.013 40.000 13.04 0.00 39.13 5.69
5442 5701 3.547054 ACCAGAACCAAAACGTCTGTA 57.453 42.857 0.00 0.00 0.00 2.74
5481 5746 5.815740 ACTTCCGGCATGTAAATTACTACTG 59.184 40.000 0.00 1.55 0.00 2.74
5482 5747 5.601583 TCCGGCATGTAAATTACTACTGA 57.398 39.130 0.00 0.00 0.00 3.41
5580 6077 2.044946 GGTCCGGGCAAAGCAGAT 60.045 61.111 9.07 0.00 0.00 2.90
5775 6280 2.571757 CAGGTGCGTTAGCTCGGA 59.428 61.111 0.00 0.00 45.42 4.55
5808 6313 0.178767 TCATCGATGGCAGGGTTGAG 59.821 55.000 24.61 0.00 0.00 3.02
5842 6347 4.394712 GCGGGCTGCCAGTACAGT 62.395 66.667 22.05 0.00 39.96 3.55
5844 6349 1.153628 CGGGCTGCCAGTACAGTAC 60.154 63.158 22.05 2.05 39.96 2.73
5845 6350 1.153628 GGGCTGCCAGTACAGTACG 60.154 63.158 22.05 0.93 39.96 3.67
5847 6352 0.813184 GGCTGCCAGTACAGTACGTA 59.187 55.000 15.17 0.00 39.96 3.57
5855 6360 2.840296 GTACAGTACGTACCAGGAGC 57.160 55.000 21.80 4.70 44.11 4.70
5856 6361 2.086869 GTACAGTACGTACCAGGAGCA 58.913 52.381 21.80 0.00 44.11 4.26
5857 6362 1.624336 ACAGTACGTACCAGGAGCAA 58.376 50.000 21.80 0.00 0.00 3.91
5858 6363 1.965643 ACAGTACGTACCAGGAGCAAA 59.034 47.619 21.80 0.00 0.00 3.68
5859 6364 2.565834 ACAGTACGTACCAGGAGCAAAT 59.434 45.455 21.80 0.00 0.00 2.32
6070 6582 0.108281 GGAGCTCAACGGTTCTACCC 60.108 60.000 17.19 0.00 33.75 3.69
6072 6584 1.078637 GCTCAACGGTTCTACCCCC 60.079 63.158 0.00 0.00 33.75 5.40
6105 6617 1.497991 GCACAGTGAGCGTCTACAAA 58.502 50.000 4.15 0.00 0.00 2.83
6112 6624 0.735287 GAGCGTCTACAAACCGGACC 60.735 60.000 9.46 0.00 0.00 4.46
6117 6629 0.906775 TCTACAAACCGGACCCCATC 59.093 55.000 9.46 0.00 0.00 3.51
6124 6636 2.444256 CCGGACCCCATCTCCCTTC 61.444 68.421 0.00 0.00 0.00 3.46
6125 6637 2.444256 CGGACCCCATCTCCCTTCC 61.444 68.421 0.00 0.00 0.00 3.46
6126 6638 1.004891 GGACCCCATCTCCCTTCCT 59.995 63.158 0.00 0.00 0.00 3.36
6127 6639 0.624795 GGACCCCATCTCCCTTCCTT 60.625 60.000 0.00 0.00 0.00 3.36
6128 6640 0.840617 GACCCCATCTCCCTTCCTTC 59.159 60.000 0.00 0.00 0.00 3.46
6129 6641 0.624795 ACCCCATCTCCCTTCCTTCC 60.625 60.000 0.00 0.00 0.00 3.46
6130 6642 0.327964 CCCCATCTCCCTTCCTTCCT 60.328 60.000 0.00 0.00 0.00 3.36
6131 6643 1.135960 CCCATCTCCCTTCCTTCCTC 58.864 60.000 0.00 0.00 0.00 3.71
6132 6644 1.135960 CCATCTCCCTTCCTTCCTCC 58.864 60.000 0.00 0.00 0.00 4.30
6133 6645 1.135960 CATCTCCCTTCCTTCCTCCC 58.864 60.000 0.00 0.00 0.00 4.30
6134 6646 1.031112 ATCTCCCTTCCTTCCTCCCT 58.969 55.000 0.00 0.00 0.00 4.20
6135 6647 0.800239 TCTCCCTTCCTTCCTCCCTT 59.200 55.000 0.00 0.00 0.00 3.95
6136 6648 1.208706 CTCCCTTCCTTCCTCCCTTC 58.791 60.000 0.00 0.00 0.00 3.46
6137 6649 0.800239 TCCCTTCCTTCCTCCCTTCT 59.200 55.000 0.00 0.00 0.00 2.85
6138 6650 1.154434 TCCCTTCCTTCCTCCCTTCTT 59.846 52.381 0.00 0.00 0.00 2.52
6139 6651 1.562008 CCCTTCCTTCCTCCCTTCTTC 59.438 57.143 0.00 0.00 0.00 2.87
6140 6652 2.556766 CCTTCCTTCCTCCCTTCTTCT 58.443 52.381 0.00 0.00 0.00 2.85
6141 6653 2.916269 CCTTCCTTCCTCCCTTCTTCTT 59.084 50.000 0.00 0.00 0.00 2.52
6142 6654 3.054728 CCTTCCTTCCTCCCTTCTTCTTC 60.055 52.174 0.00 0.00 0.00 2.87
6143 6655 2.552367 TCCTTCCTCCCTTCTTCTTCC 58.448 52.381 0.00 0.00 0.00 3.46
6144 6656 1.562008 CCTTCCTCCCTTCTTCTTCCC 59.438 57.143 0.00 0.00 0.00 3.97
6145 6657 1.562008 CTTCCTCCCTTCTTCTTCCCC 59.438 57.143 0.00 0.00 0.00 4.81
6146 6658 0.800239 TCCTCCCTTCTTCTTCCCCT 59.200 55.000 0.00 0.00 0.00 4.79
6147 6659 2.016096 TCCTCCCTTCTTCTTCCCCTA 58.984 52.381 0.00 0.00 0.00 3.53
6148 6660 2.022918 TCCTCCCTTCTTCTTCCCCTAG 60.023 54.545 0.00 0.00 0.00 3.02
6149 6661 2.403561 CTCCCTTCTTCTTCCCCTAGG 58.596 57.143 0.06 0.06 0.00 3.02
6150 6662 0.840617 CCCTTCTTCTTCCCCTAGGC 59.159 60.000 2.05 0.00 0.00 3.93
6151 6663 0.466124 CCTTCTTCTTCCCCTAGGCG 59.534 60.000 2.05 0.00 0.00 5.52
6152 6664 1.486211 CTTCTTCTTCCCCTAGGCGA 58.514 55.000 2.05 0.00 0.00 5.54
6153 6665 1.831736 CTTCTTCTTCCCCTAGGCGAA 59.168 52.381 8.58 8.58 0.00 4.70
6154 6666 1.192428 TCTTCTTCCCCTAGGCGAAC 58.808 55.000 4.67 0.00 0.00 3.95
6155 6667 0.902531 CTTCTTCCCCTAGGCGAACA 59.097 55.000 4.67 0.00 0.00 3.18
6156 6668 0.902531 TTCTTCCCCTAGGCGAACAG 59.097 55.000 4.67 0.00 0.00 3.16
6168 6680 4.021925 GAACAGCCCAGACGCCCT 62.022 66.667 0.00 0.00 0.00 5.19
6169 6681 4.335647 AACAGCCCAGACGCCCTG 62.336 66.667 0.00 0.00 42.55 4.45
6171 6683 4.020617 CAGCCCAGACGCCCTGAA 62.021 66.667 6.95 0.00 45.78 3.02
6172 6684 3.710722 AGCCCAGACGCCCTGAAG 61.711 66.667 6.95 0.38 45.78 3.02
6173 6685 4.021925 GCCCAGACGCCCTGAAGT 62.022 66.667 6.95 0.00 45.78 3.01
6174 6686 2.750350 CCCAGACGCCCTGAAGTT 59.250 61.111 6.95 0.00 45.78 2.66
6175 6687 1.073199 CCCAGACGCCCTGAAGTTT 59.927 57.895 6.95 0.00 45.78 2.66
6176 6688 0.955919 CCCAGACGCCCTGAAGTTTC 60.956 60.000 6.95 0.00 45.78 2.78
6177 6689 0.250295 CCAGACGCCCTGAAGTTTCA 60.250 55.000 6.95 0.00 45.78 2.69
6178 6690 0.868406 CAGACGCCCTGAAGTTTCAC 59.132 55.000 0.00 0.00 45.78 3.18
6179 6691 0.600255 AGACGCCCTGAAGTTTCACG 60.600 55.000 2.92 2.92 32.90 4.35
6180 6692 0.878961 GACGCCCTGAAGTTTCACGT 60.879 55.000 8.22 8.22 39.21 4.49
6181 6693 0.878961 ACGCCCTGAAGTTTCACGTC 60.879 55.000 3.96 0.00 33.88 4.34
6182 6694 0.878523 CGCCCTGAAGTTTCACGTCA 60.879 55.000 0.00 0.00 35.42 4.35
6183 6695 1.305201 GCCCTGAAGTTTCACGTCAA 58.695 50.000 0.00 0.00 36.25 3.18
6184 6696 1.002792 GCCCTGAAGTTTCACGTCAAC 60.003 52.381 0.00 0.00 36.25 3.18
6185 6697 2.285083 CCCTGAAGTTTCACGTCAACA 58.715 47.619 9.30 0.00 36.25 3.33
6186 6698 2.287915 CCCTGAAGTTTCACGTCAACAG 59.712 50.000 9.30 0.00 36.25 3.16
6187 6699 3.194861 CCTGAAGTTTCACGTCAACAGA 58.805 45.455 9.30 0.00 36.25 3.41
6188 6700 3.246226 CCTGAAGTTTCACGTCAACAGAG 59.754 47.826 9.30 2.91 36.25 3.35
6189 6701 3.857052 TGAAGTTTCACGTCAACAGAGT 58.143 40.909 9.30 0.00 33.84 3.24
6190 6702 4.250464 TGAAGTTTCACGTCAACAGAGTT 58.750 39.130 9.30 0.00 33.84 3.01
6191 6703 4.328983 TGAAGTTTCACGTCAACAGAGTTC 59.671 41.667 9.30 5.38 33.84 3.01
6192 6704 2.858344 AGTTTCACGTCAACAGAGTTCG 59.142 45.455 9.30 0.00 0.00 3.95
6193 6705 1.847818 TTCACGTCAACAGAGTTCGG 58.152 50.000 0.00 0.00 0.00 4.30
6194 6706 0.596600 TCACGTCAACAGAGTTCGGC 60.597 55.000 0.00 0.00 0.00 5.54
6195 6707 1.300697 ACGTCAACAGAGTTCGGCC 60.301 57.895 0.00 0.00 0.00 6.13
6196 6708 2.372690 CGTCAACAGAGTTCGGCCG 61.373 63.158 22.12 22.12 0.00 6.13
6197 6709 1.006571 GTCAACAGAGTTCGGCCGA 60.007 57.895 27.28 27.28 0.00 5.54
6198 6710 0.389948 GTCAACAGAGTTCGGCCGAT 60.390 55.000 31.56 16.30 0.00 4.18
6199 6711 0.108804 TCAACAGAGTTCGGCCGATC 60.109 55.000 31.56 28.12 0.00 3.69
6200 6712 1.084370 CAACAGAGTTCGGCCGATCC 61.084 60.000 31.56 22.33 0.00 3.36
6212 6724 2.335369 CGATCCGGATCCGTCCAC 59.665 66.667 33.51 18.00 45.37 4.02
6213 6725 2.194212 CGATCCGGATCCGTCCACT 61.194 63.158 33.51 11.66 45.37 4.00
6214 6726 1.364171 GATCCGGATCCGTCCACTG 59.636 63.158 30.80 15.75 45.37 3.66
6215 6727 2.088674 GATCCGGATCCGTCCACTGG 62.089 65.000 30.80 15.02 45.37 4.00
6216 6728 3.849951 CCGGATCCGTCCACTGGG 61.850 72.222 31.22 10.74 45.37 4.45
6217 6729 2.758327 CGGATCCGTCCACTGGGA 60.758 66.667 26.35 0.00 45.37 4.37
6218 6730 2.786495 CGGATCCGTCCACTGGGAG 61.786 68.421 26.35 0.00 46.12 4.30
6219 6731 2.435693 GGATCCGTCCACTGGGAGG 61.436 68.421 0.00 0.00 46.12 4.30
6220 6732 1.686110 GATCCGTCCACTGGGAGGT 60.686 63.158 8.87 0.00 46.12 3.85
6221 6733 1.961180 GATCCGTCCACTGGGAGGTG 61.961 65.000 8.87 0.00 46.12 4.00
6227 6739 2.608988 CACTGGGAGGTGGGAGCT 60.609 66.667 0.00 0.00 33.95 4.09
6228 6740 2.208349 ACTGGGAGGTGGGAGCTT 59.792 61.111 0.00 0.00 0.00 3.74
6229 6741 2.227036 ACTGGGAGGTGGGAGCTTG 61.227 63.158 0.00 0.00 0.00 4.01
6230 6742 3.635268 CTGGGAGGTGGGAGCTTGC 62.635 68.421 0.00 0.00 0.00 4.01
6231 6743 4.432741 GGGAGGTGGGAGCTTGCC 62.433 72.222 0.00 0.00 0.00 4.52
6232 6744 4.785453 GGAGGTGGGAGCTTGCCG 62.785 72.222 0.00 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.105821 TGGGACAGTTTGAACGAATCCT 59.894 45.455 0.00 0.00 32.83 3.24
1 2 2.500229 TGGGACAGTTTGAACGAATCC 58.500 47.619 0.00 5.88 0.00 3.01
26 27 1.377333 GGTTGGCTCTTTCGAGGGG 60.377 63.158 0.00 0.00 37.75 4.79
60 61 1.218047 GTAGTGTGCGATGGGCTGA 59.782 57.895 0.00 0.00 44.05 4.26
62 63 2.584608 GGTAGTGTGCGATGGGCT 59.415 61.111 0.00 0.00 44.05 5.19
70 71 1.673337 GGGGAAACGGGTAGTGTGC 60.673 63.158 0.00 0.00 0.00 4.57
172 174 2.374525 TGGGTGCATCTGGGCGTAT 61.375 57.895 0.00 0.00 36.28 3.06
174 176 4.722700 GTGGGTGCATCTGGGCGT 62.723 66.667 0.00 0.00 36.28 5.68
202 204 2.124151 GACGGGCTGCCCAATCAT 60.124 61.111 35.22 15.96 45.83 2.45
203 205 4.424711 GGACGGGCTGCCCAATCA 62.425 66.667 35.22 0.00 45.83 2.57
220 222 4.586235 GGGGATGGGTGGCGATGG 62.586 72.222 0.00 0.00 0.00 3.51
240 242 3.437795 CGTGTCCGCGTAGGGAGT 61.438 66.667 4.92 0.00 46.37 3.85
241 243 3.392595 GACGTGTCCGCGTAGGGAG 62.393 68.421 4.92 0.00 45.79 4.30
568 575 2.030562 CCCACAGCGACGAAACCT 59.969 61.111 0.00 0.00 0.00 3.50
610 617 1.968540 GACAGGTGTTGGCCTCTGC 60.969 63.158 3.32 0.00 36.58 4.26
611 618 4.386413 GACAGGTGTTGGCCTCTG 57.614 61.111 3.32 6.68 36.58 3.35
633 650 3.851128 GGCGAGAGGGGTGGTAGC 61.851 72.222 0.00 0.00 0.00 3.58
716 743 3.390823 GCGCGCGCATAGAGAGAC 61.391 66.667 46.11 15.61 41.49 3.36
755 782 1.078356 AGATCCACTGCTGCTGCTG 60.078 57.895 18.66 18.66 42.70 4.41
767 796 4.400251 CCAAATTTAGCAAGAGCAGATCCA 59.600 41.667 0.00 0.00 45.49 3.41
840 869 1.059835 CTCGCTCGAGCTGCTTTAAAC 59.940 52.381 32.88 2.59 39.32 2.01
841 870 1.350193 CTCGCTCGAGCTGCTTTAAA 58.650 50.000 32.88 10.11 39.32 1.52
913 942 2.745698 CTCCAGCCAGACACAGCA 59.254 61.111 0.00 0.00 0.00 4.41
952 987 0.459237 ATCAGAAAGCGCCTCGAGTG 60.459 55.000 12.31 4.54 0.00 3.51
958 993 0.321653 AACCGAATCAGAAAGCGCCT 60.322 50.000 2.29 0.00 0.00 5.52
967 1011 1.328680 CAATCAGCCGAACCGAATCAG 59.671 52.381 0.00 0.00 0.00 2.90
1306 1381 1.607756 TCTTCTGGCTGAGCGTCCT 60.608 57.895 0.00 0.00 0.00 3.85
1575 1656 3.276857 CAAGGACAGAGGATTCACCATG 58.723 50.000 0.00 0.00 42.04 3.66
1686 1776 1.142314 GCCGTAGCCGTTGGACATA 59.858 57.895 0.00 0.00 0.00 2.29
1752 1842 4.337145 TCAGCCCACCGTTAAAAACATAT 58.663 39.130 0.00 0.00 0.00 1.78
1767 1857 3.950861 CTTCCTCCCCCTCAGCCCA 62.951 68.421 0.00 0.00 0.00 5.36
1887 1977 2.993899 ACAGTAACAGCACGATAGCAAC 59.006 45.455 0.00 0.00 42.67 4.17
1910 2008 8.836268 AAGCAAACACATCATGATTTGTTATT 57.164 26.923 30.64 23.61 39.85 1.40
1915 2013 8.610855 CTAGTAAGCAAACACATCATGATTTG 57.389 34.615 18.23 18.23 34.80 2.32
2002 2100 2.733945 GCCGGTGTTGTGCCATTT 59.266 55.556 1.90 0.00 0.00 2.32
2003 2101 3.669344 CGCCGGTGTTGTGCCATT 61.669 61.111 6.91 0.00 0.00 3.16
2030 2128 4.879598 ACGTTTGTTTACAGAGGGAGTAG 58.120 43.478 0.00 0.00 0.00 2.57
2050 2148 3.766151 TCCATCTGTAAAGCGTCTTACG 58.234 45.455 0.00 0.00 45.88 3.18
2051 2149 5.169295 ACTTCCATCTGTAAAGCGTCTTAC 58.831 41.667 2.83 2.83 33.22 2.34
2053 2151 4.273148 ACTTCCATCTGTAAAGCGTCTT 57.727 40.909 0.00 0.00 0.00 3.01
2054 2152 3.963428 ACTTCCATCTGTAAAGCGTCT 57.037 42.857 0.00 0.00 0.00 4.18
2055 2153 4.745649 AGTACTTCCATCTGTAAAGCGTC 58.254 43.478 0.00 0.00 0.00 5.19
2056 2154 4.803098 AGTACTTCCATCTGTAAAGCGT 57.197 40.909 0.00 0.00 0.00 5.07
2057 2155 7.872881 TCTATAGTACTTCCATCTGTAAAGCG 58.127 38.462 0.00 0.00 0.00 4.68
2139 2241 5.244851 TCCTTTGTAATTTAGCATGCCAACA 59.755 36.000 15.66 7.14 0.00 3.33
2142 2244 6.605194 TGTATCCTTTGTAATTTAGCATGCCA 59.395 34.615 15.66 0.00 0.00 4.92
2181 2283 2.325082 GGACGACGGCTGCAAACAT 61.325 57.895 0.00 0.00 0.00 2.71
2199 2303 4.022416 TCACCAAGATTCAACATTTTCGGG 60.022 41.667 0.00 0.00 0.00 5.14
2200 2304 5.048782 TCTCACCAAGATTCAACATTTTCGG 60.049 40.000 0.00 0.00 0.00 4.30
2245 2350 1.374252 GCTCGACGGCAAGGAGAAA 60.374 57.895 0.00 0.00 0.00 2.52
2271 2376 3.378427 GCCAATATCGATTATCCAAGGGC 59.622 47.826 1.71 2.66 0.00 5.19
2273 2378 7.921786 TTTAGCCAATATCGATTATCCAAGG 57.078 36.000 1.71 0.00 0.00 3.61
2299 2404 5.439721 TCTGTTGCATATAAGAAGGCACAT 58.560 37.500 0.00 0.00 35.74 3.21
2434 2542 5.061808 GTGCCGAAGTACTGTACAATACAAG 59.938 44.000 16.17 6.98 38.38 3.16
2435 2543 4.925054 GTGCCGAAGTACTGTACAATACAA 59.075 41.667 16.17 0.00 38.38 2.41
2436 2544 4.219070 AGTGCCGAAGTACTGTACAATACA 59.781 41.667 16.17 8.30 37.57 2.29
2437 2545 4.741342 AGTGCCGAAGTACTGTACAATAC 58.259 43.478 19.27 6.36 37.57 1.89
2439 2547 3.955650 AGTGCCGAAGTACTGTACAAT 57.044 42.857 19.27 8.19 37.57 2.71
2446 2554 2.432628 GCGCAGTGCCGAAGTACT 60.433 61.111 10.11 0.00 39.87 2.73
2473 2581 6.314152 GGCAACTACTCAGAAATAGAAAGGAC 59.686 42.308 0.00 0.00 0.00 3.85
2519 2627 8.684520 GTGATCATCCTGATTTTTCTCTGATTT 58.315 33.333 0.00 0.00 37.20 2.17
2520 2628 8.053963 AGTGATCATCCTGATTTTTCTCTGATT 58.946 33.333 0.00 0.00 37.20 2.57
2535 2643 7.900246 ACTCAATATCCAGATAGTGATCATCCT 59.100 37.037 15.79 0.00 44.22 3.24
2558 2666 8.400186 GTGACTAAGACCTATCACTAGAAACTC 58.600 40.741 0.00 0.00 38.72 3.01
2604 2712 6.624352 TGTTCTCTCTTTGATTGACTTTGG 57.376 37.500 0.00 0.00 0.00 3.28
2658 2766 9.703892 TGCAATAAATAAAACACTTGCTGTATT 57.296 25.926 6.62 0.00 39.64 1.89
2731 2841 1.993956 TTGTTAACTGCTGCCATGGT 58.006 45.000 14.67 0.00 0.00 3.55
2732 2842 3.383620 TTTTGTTAACTGCTGCCATGG 57.616 42.857 7.63 7.63 0.00 3.66
2738 2848 6.744112 TGGAACCTATTTTTGTTAACTGCTG 58.256 36.000 7.22 0.00 0.00 4.41
2804 2914 9.911788 ACAAAAGATCATCTTGTACCATTAGAT 57.088 29.630 0.00 0.00 36.71 1.98
2815 2925 9.343103 CATCAGAAGAAACAAAAGATCATCTTG 57.657 33.333 0.00 0.00 36.71 3.02
2992 3102 5.940192 AGTTCAGATAACATGCGTCAAAA 57.060 34.783 0.00 0.00 0.00 2.44
3067 3177 4.638421 TCAAAATGGTAGGCAATTACCTCG 59.362 41.667 0.00 0.00 42.93 4.63
3099 3209 9.554724 GCAAAAATAGTATCAGTCGATCAAAAA 57.445 29.630 0.00 0.00 32.73 1.94
3239 3366 2.401583 TGACAGGTCGCTTGCAATAT 57.598 45.000 0.00 0.00 0.00 1.28
3260 3387 9.702494 TCATAGAGCTAAACTACATTCATGATG 57.298 33.333 0.00 0.00 41.71 3.07
3270 3397 6.226787 ACCATGCATCATAGAGCTAAACTAC 58.773 40.000 0.00 0.00 0.00 2.73
3330 3457 6.811665 TGTATCAATACCACAAGTTTCGAGAG 59.188 38.462 0.00 0.00 32.33 3.20
3420 3556 4.630069 GGCATTGTCAAGTCAAGTATACGT 59.370 41.667 0.00 0.00 0.00 3.57
3435 3571 3.123804 ACTTCATCGATACGGCATTGTC 58.876 45.455 0.00 0.00 0.00 3.18
3448 3584 2.972625 TCCCACAGCTTTACTTCATCG 58.027 47.619 0.00 0.00 0.00 3.84
3451 3587 3.476552 CAGTTCCCACAGCTTTACTTCA 58.523 45.455 0.00 0.00 0.00 3.02
3452 3588 2.814336 CCAGTTCCCACAGCTTTACTTC 59.186 50.000 0.00 0.00 0.00 3.01
3567 3703 8.156165 TGGCCAATCAATTCAAAGTTTTCTTAT 58.844 29.630 0.61 0.00 39.48 1.73
3588 3724 2.609984 CGAAAATCATTGCAGTTGGCCA 60.610 45.455 0.00 0.00 43.89 5.36
3638 3774 8.863872 AAACACAGCTAACCTTAGAATACAAT 57.136 30.769 0.00 0.00 32.47 2.71
3646 3782 7.907214 AGTGAATAAACACAGCTAACCTTAG 57.093 36.000 0.00 0.00 42.45 2.18
3698 3836 9.733556 TGGTAATACAGATGAACAAAGTAACAT 57.266 29.630 0.00 0.00 0.00 2.71
3771 3910 4.274459 CACACATAATCTCTGGCCTAAAGC 59.726 45.833 3.32 0.00 42.60 3.51
3772 3911 5.431765 ACACACATAATCTCTGGCCTAAAG 58.568 41.667 3.32 0.00 0.00 1.85
3778 3917 2.860735 GACGACACACATAATCTCTGGC 59.139 50.000 0.00 0.00 0.00 4.85
3814 3955 1.936547 GCGGCTCTTTCAACCTGATAG 59.063 52.381 0.00 0.00 0.00 2.08
3815 3956 1.555075 AGCGGCTCTTTCAACCTGATA 59.445 47.619 0.00 0.00 0.00 2.15
3819 3960 0.108585 TTGAGCGGCTCTTTCAACCT 59.891 50.000 28.42 0.00 0.00 3.50
3821 3962 2.030805 ACAATTGAGCGGCTCTTTCAAC 60.031 45.455 28.42 3.62 34.04 3.18
3832 3973 2.374184 TGGGGGAAATACAATTGAGCG 58.626 47.619 13.59 0.00 0.00 5.03
3834 3975 5.048504 CGATGATGGGGGAAATACAATTGAG 60.049 44.000 13.59 0.00 0.00 3.02
3853 3994 6.519382 AGAATGATGACTTTAGATGCGATGA 58.481 36.000 0.00 0.00 0.00 2.92
3948 4089 7.362487 GGCTGAAATTTTCCCACAAAAAGAAAA 60.362 33.333 6.68 0.00 42.04 2.29
3951 4092 5.122519 GGCTGAAATTTTCCCACAAAAAGA 58.877 37.500 6.68 0.00 32.04 2.52
3952 4093 4.880696 TGGCTGAAATTTTCCCACAAAAAG 59.119 37.500 6.68 0.00 32.04 2.27
3994 4137 4.612264 TGGAGTTGTTAACCAGTCCTAC 57.388 45.455 25.92 8.14 31.94 3.18
4032 4175 3.733443 AAACTTGGACAATCTGGCAAC 57.267 42.857 0.00 0.00 0.00 4.17
4168 4320 9.772973 AAGAGAGTTACAAACACATATGTACAA 57.227 29.630 8.32 0.00 38.45 2.41
4218 4370 0.392706 TCAAGAACGAGCAGCAGGAA 59.607 50.000 0.00 0.00 0.00 3.36
4273 4425 4.580167 TGAACTTCCAAATGGAGTTCAGTG 59.420 41.667 26.20 9.48 45.79 3.66
4274 4426 4.792068 TGAACTTCCAAATGGAGTTCAGT 58.208 39.130 26.20 16.12 45.79 3.41
4282 4434 4.520111 TCTCATGTGTGAACTTCCAAATGG 59.480 41.667 0.00 0.00 33.05 3.16
4288 4440 7.271511 AGATAAGATCTCATGTGTGAACTTCC 58.728 38.462 9.77 5.61 33.42 3.46
4314 4466 7.175467 GCCCACACATTTCTCATAATATCATGA 59.825 37.037 0.00 0.00 33.88 3.07
4423 4576 7.042335 ACTTGAAGATAACGAGAAATAGGTGG 58.958 38.462 0.00 0.00 0.00 4.61
4512 4703 6.813152 CACCATTTTCCCTATGAATGAAACAC 59.187 38.462 0.00 0.00 33.67 3.32
4533 4724 2.623878 TTACGGCAGAAGTTTCACCA 57.376 45.000 0.00 0.00 0.00 4.17
4612 4803 3.317993 ACAATGCCTACAAAACAGTGGAC 59.682 43.478 0.00 0.00 33.92 4.02
4622 4824 4.765273 ACGTCATATGACAATGCCTACAA 58.235 39.130 30.15 0.00 44.99 2.41
4673 4875 8.936070 AAATTACGTTAGGGCAAAAATTATCC 57.064 30.769 0.00 0.00 0.00 2.59
4708 4911 2.166664 ACCTTCTCGAATACCTGCAGAC 59.833 50.000 17.39 0.14 0.00 3.51
4710 4913 2.969628 ACCTTCTCGAATACCTGCAG 57.030 50.000 6.78 6.78 0.00 4.41
4748 4951 0.526524 GGCAGATCCTCTTCGACGTG 60.527 60.000 0.00 0.00 0.00 4.49
4822 5025 2.689766 CGCAGCGTCGAAAGTAGC 59.310 61.111 6.65 0.00 35.53 3.58
4858 5061 4.261072 CCTGGCGATTCTGAAATTCATCTG 60.261 45.833 0.00 0.00 0.00 2.90
4918 5121 0.750249 GCCTAGGAGCCTCAACTCTC 59.250 60.000 14.75 0.00 36.87 3.20
4941 5144 1.880340 GAAGATCGCCGGCAGTCTG 60.880 63.158 28.98 9.94 0.00 3.51
4993 5197 4.607293 ACAAATGCTCTCTACTCACACA 57.393 40.909 0.00 0.00 0.00 3.72
5046 5250 5.683876 AATGTGGTTCTAGTGCAGTATCT 57.316 39.130 0.71 0.00 0.00 1.98
5074 5278 6.173339 TGAGCCTCTCGAAACAGAAAAATAT 58.827 36.000 0.00 0.00 32.35 1.28
5076 5280 4.389374 TGAGCCTCTCGAAACAGAAAAAT 58.611 39.130 0.00 0.00 32.35 1.82
5080 5284 3.685139 AATGAGCCTCTCGAAACAGAA 57.315 42.857 0.00 0.00 32.35 3.02
5092 5296 5.435686 TCTAACATGGTTGTAATGAGCCT 57.564 39.130 0.00 0.00 34.06 4.58
5093 5297 6.509418 TTTCTAACATGGTTGTAATGAGCC 57.491 37.500 0.00 0.00 34.06 4.70
5094 5298 7.761409 TCATTTCTAACATGGTTGTAATGAGC 58.239 34.615 18.34 0.00 34.49 4.26
5096 5300 8.862325 ACTCATTTCTAACATGGTTGTAATGA 57.138 30.769 20.07 20.07 35.91 2.57
5097 5301 9.912634 AAACTCATTTCTAACATGGTTGTAATG 57.087 29.630 15.09 15.09 34.06 1.90
5098 5302 9.912634 CAAACTCATTTCTAACATGGTTGTAAT 57.087 29.630 0.00 0.00 34.06 1.89
5100 5304 8.458573 ACAAACTCATTTCTAACATGGTTGTA 57.541 30.769 0.00 0.00 34.06 2.41
5174 5380 2.705658 AGGGAAATCATCTACGGATGCA 59.294 45.455 0.00 0.00 46.41 3.96
5180 5386 6.371548 TCTCACAAAAAGGGAAATCATCTACG 59.628 38.462 0.00 0.00 0.00 3.51
5192 5398 4.199310 TCAGTTCACTCTCACAAAAAGGG 58.801 43.478 0.00 0.00 0.00 3.95
5196 5402 5.487433 TCAGTTCAGTTCACTCTCACAAAA 58.513 37.500 0.00 0.00 0.00 2.44
5197 5403 5.084818 TCAGTTCAGTTCACTCTCACAAA 57.915 39.130 0.00 0.00 0.00 2.83
5198 5404 4.736126 TCAGTTCAGTTCACTCTCACAA 57.264 40.909 0.00 0.00 0.00 3.33
5200 5406 4.688021 AGTTCAGTTCAGTTCACTCTCAC 58.312 43.478 0.00 0.00 0.00 3.51
5201 5407 5.594725 AGTAGTTCAGTTCAGTTCACTCTCA 59.405 40.000 0.00 0.00 0.00 3.27
5220 5438 7.386299 CACATCTTCTTTACTCTGCAAAGTAGT 59.614 37.037 0.00 0.00 34.12 2.73
5260 5478 6.881065 ACAAGAAGCTTTGCTATGTCTGATTA 59.119 34.615 0.00 0.00 38.25 1.75
5319 5553 1.270839 GCCAGAAACACAGCCTACAGA 60.271 52.381 0.00 0.00 0.00 3.41
5320 5554 1.160137 GCCAGAAACACAGCCTACAG 58.840 55.000 0.00 0.00 0.00 2.74
5321 5555 0.764890 AGCCAGAAACACAGCCTACA 59.235 50.000 0.00 0.00 0.00 2.74
5322 5556 1.443802 GAGCCAGAAACACAGCCTAC 58.556 55.000 0.00 0.00 0.00 3.18
5323 5557 0.324943 GGAGCCAGAAACACAGCCTA 59.675 55.000 0.00 0.00 0.00 3.93
5324 5558 1.073897 GGAGCCAGAAACACAGCCT 59.926 57.895 0.00 0.00 0.00 4.58
5325 5559 0.610232 ATGGAGCCAGAAACACAGCC 60.610 55.000 0.00 0.00 0.00 4.85
5326 5560 1.068055 CAATGGAGCCAGAAACACAGC 60.068 52.381 0.00 0.00 0.00 4.40
5327 5561 1.068055 GCAATGGAGCCAGAAACACAG 60.068 52.381 0.00 0.00 0.00 3.66
5407 5666 0.883833 CTGGTTCCACATGACCAAGC 59.116 55.000 0.00 0.00 44.77 4.01
5442 5701 5.010314 TGCCGGAAGTTCTCGTAATATACAT 59.990 40.000 5.05 0.00 0.00 2.29
5481 5746 6.093771 CCATATGAAGCTCCAGCAAAGATATC 59.906 42.308 3.65 0.00 45.16 1.63
5482 5747 5.944599 CCATATGAAGCTCCAGCAAAGATAT 59.055 40.000 3.65 0.00 45.16 1.63
5490 5978 0.110104 AGCCCATATGAAGCTCCAGC 59.890 55.000 12.82 0.00 42.49 4.85
5775 6280 1.072173 TCGATGATGGGCCGATGATTT 59.928 47.619 4.37 0.00 0.00 2.17
5804 6309 0.175760 GTCCGCATCAGGTAGCTCAA 59.824 55.000 0.00 0.00 0.00 3.02
5808 6313 1.884926 GCTGTCCGCATCAGGTAGC 60.885 63.158 0.00 0.00 38.92 3.58
5827 6332 1.153628 CGTACTGTACTGGCAGCCC 60.154 63.158 15.89 5.68 39.96 5.19
5840 6345 3.596214 CAATTTGCTCCTGGTACGTACT 58.404 45.455 24.07 0.00 0.00 2.73
5841 6346 2.095372 GCAATTTGCTCCTGGTACGTAC 59.905 50.000 17.56 17.56 40.96 3.67
5842 6347 2.289756 TGCAATTTGCTCCTGGTACGTA 60.290 45.455 21.19 0.00 45.31 3.57
5844 6349 1.131126 CTGCAATTTGCTCCTGGTACG 59.869 52.381 21.19 0.00 45.31 3.67
5845 6350 1.474077 CCTGCAATTTGCTCCTGGTAC 59.526 52.381 21.19 0.00 45.31 3.34
5847 6352 0.901580 CCCTGCAATTTGCTCCTGGT 60.902 55.000 21.19 0.00 45.31 4.00
5849 6354 0.612732 TCCCCTGCAATTTGCTCCTG 60.613 55.000 21.19 8.63 45.31 3.86
5850 6355 0.337428 ATCCCCTGCAATTTGCTCCT 59.663 50.000 21.19 0.00 45.31 3.69
5852 6357 2.234414 TGAAATCCCCTGCAATTTGCTC 59.766 45.455 21.19 9.05 45.31 4.26
5853 6358 2.027837 GTGAAATCCCCTGCAATTTGCT 60.028 45.455 21.19 0.00 45.31 3.91
5854 6359 2.349590 GTGAAATCCCCTGCAATTTGC 58.650 47.619 14.49 14.49 45.29 3.68
5855 6360 2.674747 CGGTGAAATCCCCTGCAATTTG 60.675 50.000 0.00 0.00 0.00 2.32
5856 6361 1.550072 CGGTGAAATCCCCTGCAATTT 59.450 47.619 0.00 0.00 0.00 1.82
5857 6362 1.185315 CGGTGAAATCCCCTGCAATT 58.815 50.000 0.00 0.00 0.00 2.32
5858 6363 0.684153 CCGGTGAAATCCCCTGCAAT 60.684 55.000 0.00 0.00 0.00 3.56
5859 6364 1.304052 CCGGTGAAATCCCCTGCAA 60.304 57.895 0.00 0.00 0.00 4.08
5867 6379 1.676006 CCATTACTGCCCGGTGAAATC 59.324 52.381 0.00 0.00 0.00 2.17
5988 6500 4.394712 GGTACAGCCAGGCGCACT 62.395 66.667 10.83 0.02 41.38 4.40
5995 6507 0.904865 TGTCAGGAGGGTACAGCCAG 60.905 60.000 0.00 0.00 39.65 4.85
6078 6590 1.283793 GCTCACTGTGCGCAAATGT 59.716 52.632 14.00 8.69 0.00 2.71
6088 6600 1.602165 CGGTTTGTAGACGCTCACTGT 60.602 52.381 0.00 0.00 0.00 3.55
6097 6609 0.616891 ATGGGGTCCGGTTTGTAGAC 59.383 55.000 0.00 0.00 0.00 2.59
6105 6617 3.268647 AAGGGAGATGGGGTCCGGT 62.269 63.158 0.00 0.00 34.56 5.28
6112 6624 1.135960 GAGGAAGGAAGGGAGATGGG 58.864 60.000 0.00 0.00 0.00 4.00
6117 6629 1.208706 GAAGGGAGGAAGGAAGGGAG 58.791 60.000 0.00 0.00 0.00 4.30
6124 6636 1.562008 GGGAAGAAGAAGGGAGGAAGG 59.438 57.143 0.00 0.00 0.00 3.46
6125 6637 1.562008 GGGGAAGAAGAAGGGAGGAAG 59.438 57.143 0.00 0.00 0.00 3.46
6126 6638 1.154434 AGGGGAAGAAGAAGGGAGGAA 59.846 52.381 0.00 0.00 0.00 3.36
6127 6639 0.800239 AGGGGAAGAAGAAGGGAGGA 59.200 55.000 0.00 0.00 0.00 3.71
6128 6640 2.403561 CTAGGGGAAGAAGAAGGGAGG 58.596 57.143 0.00 0.00 0.00 4.30
6129 6641 2.403561 CCTAGGGGAAGAAGAAGGGAG 58.596 57.143 0.00 0.00 33.58 4.30
6130 6642 1.625508 GCCTAGGGGAAGAAGAAGGGA 60.626 57.143 11.72 0.00 33.58 4.20
6131 6643 0.840617 GCCTAGGGGAAGAAGAAGGG 59.159 60.000 11.72 0.00 33.58 3.95
6132 6644 0.466124 CGCCTAGGGGAAGAAGAAGG 59.534 60.000 20.99 0.00 33.58 3.46
6133 6645 1.486211 TCGCCTAGGGGAAGAAGAAG 58.514 55.000 25.28 0.00 34.11 2.85
6134 6646 1.553704 GTTCGCCTAGGGGAAGAAGAA 59.446 52.381 34.66 15.39 45.41 2.52
6135 6647 1.192428 GTTCGCCTAGGGGAAGAAGA 58.808 55.000 34.66 16.08 45.41 2.87
6136 6648 0.902531 TGTTCGCCTAGGGGAAGAAG 59.097 55.000 34.66 0.00 45.41 2.85
6137 6649 0.902531 CTGTTCGCCTAGGGGAAGAA 59.097 55.000 34.66 25.53 45.41 2.52
6138 6650 1.614241 GCTGTTCGCCTAGGGGAAGA 61.614 60.000 34.66 31.85 45.41 2.87
6139 6651 1.153349 GCTGTTCGCCTAGGGGAAG 60.153 63.158 34.66 26.36 45.41 3.46
6140 6652 2.987125 GCTGTTCGCCTAGGGGAA 59.013 61.111 31.53 31.53 43.23 3.97
6151 6663 4.021925 AGGGCGTCTGGGCTGTTC 62.022 66.667 0.00 0.00 41.87 3.18
6152 6664 4.335647 CAGGGCGTCTGGGCTGTT 62.336 66.667 0.00 0.00 39.76 3.16
6154 6666 3.965539 CTTCAGGGCGTCTGGGCTG 62.966 68.421 7.79 0.00 43.53 4.85
6155 6667 3.710722 CTTCAGGGCGTCTGGGCT 61.711 66.667 7.79 0.00 43.53 5.19
6156 6668 3.553095 AACTTCAGGGCGTCTGGGC 62.553 63.158 7.79 0.00 43.53 5.36
6157 6669 0.955919 GAAACTTCAGGGCGTCTGGG 60.956 60.000 7.79 4.88 43.53 4.45
6158 6670 0.250295 TGAAACTTCAGGGCGTCTGG 60.250 55.000 7.79 0.00 43.53 3.86
6159 6671 0.868406 GTGAAACTTCAGGGCGTCTG 59.132 55.000 0.00 0.00 44.68 3.51
6160 6672 0.600255 CGTGAAACTTCAGGGCGTCT 60.600 55.000 4.57 0.00 38.89 4.18
6161 6673 0.878961 ACGTGAAACTTCAGGGCGTC 60.879 55.000 14.65 0.00 44.80 5.19
6162 6674 0.878961 GACGTGAAACTTCAGGGCGT 60.879 55.000 14.65 10.56 44.80 5.68
6163 6675 1.860078 GACGTGAAACTTCAGGGCG 59.140 57.895 14.65 7.89 44.80 6.13
6164 6676 1.002792 GTTGACGTGAAACTTCAGGGC 60.003 52.381 14.65 12.64 46.20 5.19
6165 6677 2.285083 TGTTGACGTGAAACTTCAGGG 58.715 47.619 14.65 3.71 46.20 4.45
6166 6678 3.194861 TCTGTTGACGTGAAACTTCAGG 58.805 45.455 9.91 9.91 46.20 3.86
6167 6679 3.865745 ACTCTGTTGACGTGAAACTTCAG 59.134 43.478 0.00 0.00 46.20 3.02
6168 6680 3.857052 ACTCTGTTGACGTGAAACTTCA 58.143 40.909 0.00 0.00 43.89 3.02
6169 6681 4.548346 CGAACTCTGTTGACGTGAAACTTC 60.548 45.833 0.00 0.00 35.37 3.01
6170 6682 3.306166 CGAACTCTGTTGACGTGAAACTT 59.694 43.478 0.00 0.00 31.75 2.66
6171 6683 2.858344 CGAACTCTGTTGACGTGAAACT 59.142 45.455 0.00 0.00 31.75 2.66
6172 6684 2.034001 CCGAACTCTGTTGACGTGAAAC 60.034 50.000 0.00 0.00 0.00 2.78
6173 6685 2.198406 CCGAACTCTGTTGACGTGAAA 58.802 47.619 0.00 0.00 0.00 2.69
6174 6686 1.847818 CCGAACTCTGTTGACGTGAA 58.152 50.000 0.00 0.00 0.00 3.18
6175 6687 0.596600 GCCGAACTCTGTTGACGTGA 60.597 55.000 0.00 0.00 0.00 4.35
6176 6688 1.557443 GGCCGAACTCTGTTGACGTG 61.557 60.000 0.00 0.00 0.00 4.49
6177 6689 1.300697 GGCCGAACTCTGTTGACGT 60.301 57.895 0.00 0.00 0.00 4.34
6178 6690 2.372690 CGGCCGAACTCTGTTGACG 61.373 63.158 24.07 0.00 0.00 4.35
6179 6691 0.389948 ATCGGCCGAACTCTGTTGAC 60.390 55.000 34.66 0.00 0.00 3.18
6180 6692 0.108804 GATCGGCCGAACTCTGTTGA 60.109 55.000 34.66 4.82 0.00 3.18
6181 6693 1.084370 GGATCGGCCGAACTCTGTTG 61.084 60.000 34.66 0.00 0.00 3.33
6182 6694 1.218316 GGATCGGCCGAACTCTGTT 59.782 57.895 34.66 14.44 0.00 3.16
6183 6695 2.893398 GGATCGGCCGAACTCTGT 59.107 61.111 34.66 15.34 0.00 3.41
6201 6713 2.435693 CCTCCCAGTGGACGGATCC 61.436 68.421 11.95 0.00 46.48 3.36
6202 6714 1.686110 ACCTCCCAGTGGACGGATC 60.686 63.158 19.80 0.00 35.03 3.36
6203 6715 1.990060 CACCTCCCAGTGGACGGAT 60.990 63.158 19.80 5.27 35.03 4.18
6204 6716 2.603473 CACCTCCCAGTGGACGGA 60.603 66.667 19.80 5.25 35.03 4.69
6210 6722 2.227036 AAGCTCCCACCTCCCAGTG 61.227 63.158 0.00 0.00 37.51 3.66
6211 6723 2.208349 AAGCTCCCACCTCCCAGT 59.792 61.111 0.00 0.00 0.00 4.00
6212 6724 2.673523 CAAGCTCCCACCTCCCAG 59.326 66.667 0.00 0.00 0.00 4.45
6213 6725 3.650950 GCAAGCTCCCACCTCCCA 61.651 66.667 0.00 0.00 0.00 4.37
6214 6726 4.432741 GGCAAGCTCCCACCTCCC 62.433 72.222 0.00 0.00 0.00 4.30
6215 6727 4.785453 CGGCAAGCTCCCACCTCC 62.785 72.222 4.47 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.