Multiple sequence alignment - TraesCS6B01G363600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G363600 chr6B 100.000 5909 0 0 1 5909 634610543 634616451 0.000000e+00 10912.0
1 TraesCS6B01G363600 chr6D 92.094 1948 84 23 804 2730 421559875 421557977 0.000000e+00 2680.0
2 TraesCS6B01G363600 chr6D 90.364 1484 86 29 4045 5505 421556770 421555321 0.000000e+00 1895.0
3 TraesCS6B01G363600 chr6D 90.871 1205 86 12 2822 4005 421557974 421556773 0.000000e+00 1594.0
4 TraesCS6B01G363600 chr6D 84.794 776 55 28 4 765 421560594 421559868 0.000000e+00 721.0
5 TraesCS6B01G363600 chr6D 87.678 211 25 1 5634 5843 421555219 421555009 1.640000e-60 244.0
6 TraesCS6B01G363600 chr6D 91.667 72 6 0 5838 5909 421554986 421554915 3.770000e-17 100.0
7 TraesCS6B01G363600 chr6A 93.746 1583 62 14 1164 2730 564389975 564391536 0.000000e+00 2340.0
8 TraesCS6B01G363600 chr6A 90.665 1489 85 29 4085 5548 564393083 564394542 0.000000e+00 1930.0
9 TraesCS6B01G363600 chr6A 94.118 1275 62 7 2819 4088 564391536 564392802 0.000000e+00 1927.0
10 TraesCS6B01G363600 chr6A 97.076 171 4 1 933 1103 564389788 564389957 2.690000e-73 287.0
11 TraesCS6B01G363600 chr6A 85.401 274 13 9 114 386 564381317 564381564 5.870000e-65 259.0
12 TraesCS6B01G363600 chr6A 81.439 264 38 7 5582 5840 564394517 564394774 7.760000e-49 206.0
13 TraesCS6B01G363600 chr6A 87.845 181 8 4 681 861 564381757 564381923 3.610000e-47 200.0
14 TraesCS6B01G363600 chr6A 100.000 45 0 0 862 906 564389747 564389791 3.790000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G363600 chr6B 634610543 634616451 5908 False 10912.000000 10912 100.000000 1 5909 1 chr6B.!!$F1 5908
1 TraesCS6B01G363600 chr6D 421554915 421560594 5679 True 1205.666667 2680 89.578000 4 5909 6 chr6D.!!$R1 5905
2 TraesCS6B01G363600 chr6A 564389747 564394774 5027 False 1129.033333 2340 92.840667 862 5840 6 chr6A.!!$F2 4978
3 TraesCS6B01G363600 chr6A 564381317 564381923 606 False 229.500000 259 86.623000 114 861 2 chr6A.!!$F1 747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
419 427 0.031043 GTTGGGTTGGGTGTAAACGC 59.969 55.0 0.00 0.00 40.00 4.84 F
650 663 0.040157 GCGTCGGTGTGTACTGTGTA 60.040 55.0 0.00 0.00 34.68 2.90 F
908 979 0.378962 CGCCATTTTTAATCCGCGGA 59.621 50.0 33.12 33.12 36.16 5.54 F
2494 2604 1.012841 CTCATTCGCCTTTCTCTGCC 58.987 55.0 0.00 0.00 0.00 4.85 F
3602 3729 0.041839 GATTAGCACGAAGGCATGCG 60.042 55.0 12.44 0.00 46.74 4.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1841 1945 1.152440 ATGTAGAGCGGGAGGGGAG 60.152 63.158 0.00 0.00 0.0 4.30 R
2542 2652 0.179936 CATCCCCACTTCTGGCTCTC 59.820 60.000 0.00 0.00 36.0 3.20 R
2872 2982 0.599060 TGAGGTACACGACGATTGCA 59.401 50.000 0.00 0.00 0.0 4.08 R
3858 3988 1.261480 AGTAGCATATCAGGAGGCCG 58.739 55.000 0.00 0.00 0.0 6.13 R
5341 5779 0.179176 TGCATGGAATTACGCGTTGC 60.179 50.000 20.78 20.17 0.0 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.252599 TCAGACATGCTAATTCAACCCTAT 57.747 37.500 0.00 0.00 0.00 2.57
26 27 6.057533 TCAGACATGCTAATTCAACCCTATG 58.942 40.000 0.00 0.00 0.00 2.23
28 29 3.891366 ACATGCTAATTCAACCCTATGGC 59.109 43.478 0.00 0.00 33.59 4.40
48 51 2.095415 GCCTATCGCCGAAAGTTTTTGT 60.095 45.455 0.00 0.00 0.00 2.83
76 79 1.567357 AAAGGAGGAGGAGAGTGAGC 58.433 55.000 0.00 0.00 0.00 4.26
78 81 1.077357 GGAGGAGGAGAGTGAGCGA 60.077 63.158 0.00 0.00 0.00 4.93
79 82 1.101049 GGAGGAGGAGAGTGAGCGAG 61.101 65.000 0.00 0.00 0.00 5.03
81 84 0.679640 AGGAGGAGAGTGAGCGAGTG 60.680 60.000 0.00 0.00 0.00 3.51
82 85 0.678366 GGAGGAGAGTGAGCGAGTGA 60.678 60.000 0.00 0.00 0.00 3.41
84 87 0.037590 AGGAGAGTGAGCGAGTGAGT 59.962 55.000 0.00 0.00 0.00 3.41
85 88 0.885196 GGAGAGTGAGCGAGTGAGTT 59.115 55.000 0.00 0.00 0.00 3.01
86 89 1.271102 GGAGAGTGAGCGAGTGAGTTT 59.729 52.381 0.00 0.00 0.00 2.66
87 90 2.488545 GGAGAGTGAGCGAGTGAGTTTA 59.511 50.000 0.00 0.00 0.00 2.01
88 91 3.494232 GAGAGTGAGCGAGTGAGTTTAC 58.506 50.000 0.00 0.00 0.00 2.01
89 92 2.229302 AGAGTGAGCGAGTGAGTTTACC 59.771 50.000 0.00 0.00 0.00 2.85
90 93 1.961394 AGTGAGCGAGTGAGTTTACCA 59.039 47.619 0.00 0.00 0.00 3.25
91 94 2.563179 AGTGAGCGAGTGAGTTTACCAT 59.437 45.455 0.00 0.00 0.00 3.55
92 95 2.668457 GTGAGCGAGTGAGTTTACCATG 59.332 50.000 0.00 0.00 0.00 3.66
93 96 2.560981 TGAGCGAGTGAGTTTACCATGA 59.439 45.455 0.00 0.00 0.00 3.07
94 97 3.006430 TGAGCGAGTGAGTTTACCATGAA 59.994 43.478 0.00 0.00 0.00 2.57
95 98 3.994392 GAGCGAGTGAGTTTACCATGAAA 59.006 43.478 0.00 0.00 0.00 2.69
96 99 4.385825 AGCGAGTGAGTTTACCATGAAAA 58.614 39.130 0.00 0.00 0.00 2.29
97 100 4.452455 AGCGAGTGAGTTTACCATGAAAAG 59.548 41.667 0.00 0.00 0.00 2.27
114 117 5.777802 TGAAAAGCAGTCACTGAAAAACAA 58.222 33.333 9.70 0.00 32.44 2.83
115 118 6.219473 TGAAAAGCAGTCACTGAAAAACAAA 58.781 32.000 9.70 0.00 32.44 2.83
264 267 6.456501 AGACAACAGTCTAGTTTTATCGCTT 58.543 36.000 0.00 0.00 40.71 4.68
407 415 1.353091 GTGAGAGAGGAGGTTGGGTT 58.647 55.000 0.00 0.00 0.00 4.11
408 416 1.002544 GTGAGAGAGGAGGTTGGGTTG 59.997 57.143 0.00 0.00 0.00 3.77
409 417 0.615850 GAGAGAGGAGGTTGGGTTGG 59.384 60.000 0.00 0.00 0.00 3.77
410 418 0.842467 AGAGAGGAGGTTGGGTTGGG 60.842 60.000 0.00 0.00 0.00 4.12
411 419 1.072930 AGAGGAGGTTGGGTTGGGT 60.073 57.895 0.00 0.00 0.00 4.51
412 420 1.074951 GAGGAGGTTGGGTTGGGTG 59.925 63.158 0.00 0.00 0.00 4.61
413 421 1.699930 AGGAGGTTGGGTTGGGTGT 60.700 57.895 0.00 0.00 0.00 4.16
414 422 0.402272 AGGAGGTTGGGTTGGGTGTA 60.402 55.000 0.00 0.00 0.00 2.90
415 423 0.479378 GGAGGTTGGGTTGGGTGTAA 59.521 55.000 0.00 0.00 0.00 2.41
416 424 1.133419 GGAGGTTGGGTTGGGTGTAAA 60.133 52.381 0.00 0.00 0.00 2.01
417 425 1.958579 GAGGTTGGGTTGGGTGTAAAC 59.041 52.381 0.00 0.00 0.00 2.01
418 426 0.669619 GGTTGGGTTGGGTGTAAACG 59.330 55.000 0.00 0.00 0.00 3.60
419 427 0.031043 GTTGGGTTGGGTGTAAACGC 59.969 55.000 0.00 0.00 40.00 4.84
420 428 0.395311 TTGGGTTGGGTGTAAACGCA 60.395 50.000 0.00 0.00 45.37 5.24
421 429 0.395311 TGGGTTGGGTGTAAACGCAA 60.395 50.000 11.29 11.29 44.47 4.85
424 432 1.355916 TTGGGTGTAAACGCAACGC 59.644 52.632 11.29 0.00 37.58 4.84
447 455 5.557893 GCGGTAGTACTAGTATGAACAGTCG 60.558 48.000 5.75 5.71 0.00 4.18
450 458 7.359097 CGGTAGTACTAGTATGAACAGTCGATC 60.359 44.444 5.75 0.00 0.00 3.69
451 459 6.528014 AGTACTAGTATGAACAGTCGATCG 57.472 41.667 9.36 9.36 0.00 3.69
528 540 3.699894 AGGCTCAGGCTGACACCG 61.700 66.667 14.43 5.01 36.97 4.94
567 579 2.177778 GAGTTCGTCCGTCCGTCC 59.822 66.667 0.00 0.00 0.00 4.79
568 580 3.657835 GAGTTCGTCCGTCCGTCCG 62.658 68.421 0.00 0.00 0.00 4.79
569 581 4.030452 GTTCGTCCGTCCGTCCGT 62.030 66.667 0.00 0.00 0.00 4.69
570 582 3.726517 TTCGTCCGTCCGTCCGTC 61.727 66.667 0.00 0.00 0.00 4.79
644 657 3.161405 CGTCGCGTCGGTGTGTAC 61.161 66.667 17.87 0.00 0.00 2.90
646 659 2.078914 GTCGCGTCGGTGTGTACTG 61.079 63.158 5.77 0.00 34.36 2.74
647 660 2.050714 CGCGTCGGTGTGTACTGT 60.051 61.111 0.00 0.00 34.68 3.55
648 661 2.362047 CGCGTCGGTGTGTACTGTG 61.362 63.158 0.00 0.00 34.68 3.66
649 662 1.299620 GCGTCGGTGTGTACTGTGT 60.300 57.895 0.00 0.00 34.68 3.72
650 663 0.040157 GCGTCGGTGTGTACTGTGTA 60.040 55.000 0.00 0.00 34.68 2.90
651 664 1.959747 CGTCGGTGTGTACTGTGTAG 58.040 55.000 0.00 0.00 34.68 2.74
652 665 1.694639 GTCGGTGTGTACTGTGTAGC 58.305 55.000 0.00 0.00 34.68 3.58
653 666 1.001048 GTCGGTGTGTACTGTGTAGCA 60.001 52.381 0.00 0.00 34.68 3.49
654 667 1.682323 TCGGTGTGTACTGTGTAGCAA 59.318 47.619 0.00 0.00 34.68 3.91
655 668 2.058798 CGGTGTGTACTGTGTAGCAAG 58.941 52.381 0.00 0.00 0.00 4.01
907 978 1.206115 GCGCCATTTTTAATCCGCGG 61.206 55.000 22.12 22.12 39.95 6.46
908 979 0.378962 CGCCATTTTTAATCCGCGGA 59.621 50.000 33.12 33.12 36.16 5.54
923 994 2.131067 CGGAGAGAGAGGGAAGCCC 61.131 68.421 0.00 0.00 45.90 5.19
953 1034 2.743928 CCCGCTCCACTCAACTGC 60.744 66.667 0.00 0.00 0.00 4.40
1151 1232 1.022982 CCCGCGGTAAAAACCCTCTC 61.023 60.000 26.12 0.00 0.00 3.20
1173 1254 2.662633 CCCCCTATCTATCCCTCTTCCT 59.337 54.545 0.00 0.00 0.00 3.36
1177 1258 5.521795 CCCCTATCTATCCCTCTTCCTCATT 60.522 48.000 0.00 0.00 0.00 2.57
1550 1636 2.700371 CTCCCTTTGTTTGGCTCCTTTT 59.300 45.455 0.00 0.00 0.00 2.27
1674 1778 3.335356 AAGCGATCCCAGTGCCCAG 62.335 63.158 0.00 0.00 0.00 4.45
1737 1841 4.724697 CTTTCACACGCGCGCAGG 62.725 66.667 32.58 23.94 0.00 4.85
1762 1866 4.808238 GGCGACGACGACGAGGAC 62.808 72.222 22.94 3.27 42.66 3.85
1768 1872 2.435586 GACGACGAGGACGAGGGA 60.436 66.667 0.00 0.00 42.66 4.20
1841 1945 2.673368 CACTCGCTGAAAGGTAATCCAC 59.327 50.000 0.00 0.00 35.89 4.02
1849 1953 1.894699 AAGGTAATCCACTCCCCTCC 58.105 55.000 0.00 0.00 35.89 4.30
1853 1957 2.252012 TAATCCACTCCCCTCCCGCT 62.252 60.000 0.00 0.00 0.00 5.52
1869 1979 1.600957 CCGCTCTACATGATGCCTTTG 59.399 52.381 0.00 0.00 0.00 2.77
1885 1995 2.483013 CCTTTGGTGTCGAGTGAAGTGA 60.483 50.000 0.00 0.00 0.00 3.41
1915 2025 3.181491 GCTTACTGTTTGTTGGCTGTTCA 60.181 43.478 0.00 0.00 0.00 3.18
2494 2604 1.012841 CTCATTCGCCTTTCTCTGCC 58.987 55.000 0.00 0.00 0.00 4.85
2542 2652 1.669115 CGGTGACTTCAGCAGTGGG 60.669 63.158 9.01 0.00 44.00 4.61
2626 2736 3.319137 TGGAGATCAGCAAGTACACAC 57.681 47.619 0.00 0.00 0.00 3.82
2725 2835 6.593382 AGTTTCTTCTCATCAGTATCAAGCAC 59.407 38.462 0.00 0.00 0.00 4.40
2729 2839 7.108194 TCTTCTCATCAGTATCAAGCACATTT 58.892 34.615 0.00 0.00 0.00 2.32
2730 2840 7.609146 TCTTCTCATCAGTATCAAGCACATTTT 59.391 33.333 0.00 0.00 0.00 1.82
2731 2841 7.692460 TCTCATCAGTATCAAGCACATTTTT 57.308 32.000 0.00 0.00 0.00 1.94
2732 2842 7.532571 TCTCATCAGTATCAAGCACATTTTTG 58.467 34.615 0.00 0.00 0.00 2.44
2733 2843 6.094719 TCATCAGTATCAAGCACATTTTTGC 58.905 36.000 0.00 0.00 43.34 3.68
2745 2855 6.529463 GCACATTTTTGCTACTTCACATTT 57.471 33.333 0.00 0.00 39.59 2.32
2746 2856 6.947258 GCACATTTTTGCTACTTCACATTTT 58.053 32.000 0.00 0.00 39.59 1.82
2747 2857 8.071122 GCACATTTTTGCTACTTCACATTTTA 57.929 30.769 0.00 0.00 39.59 1.52
2748 2858 8.711457 GCACATTTTTGCTACTTCACATTTTAT 58.289 29.630 0.00 0.00 39.59 1.40
2752 2862 8.519492 TTTTTGCTACTTCACATTTTATCTGC 57.481 30.769 0.00 0.00 0.00 4.26
2753 2863 5.818136 TGCTACTTCACATTTTATCTGCC 57.182 39.130 0.00 0.00 0.00 4.85
2754 2864 5.500234 TGCTACTTCACATTTTATCTGCCT 58.500 37.500 0.00 0.00 0.00 4.75
2755 2865 5.355071 TGCTACTTCACATTTTATCTGCCTG 59.645 40.000 0.00 0.00 0.00 4.85
2756 2866 5.586243 GCTACTTCACATTTTATCTGCCTGA 59.414 40.000 0.00 0.00 0.00 3.86
2757 2867 6.261826 GCTACTTCACATTTTATCTGCCTGAT 59.738 38.462 0.00 0.00 39.11 2.90
2758 2868 7.201767 GCTACTTCACATTTTATCTGCCTGATT 60.202 37.037 0.00 0.00 36.65 2.57
2759 2869 9.330063 CTACTTCACATTTTATCTGCCTGATTA 57.670 33.333 0.00 0.00 36.65 1.75
2760 2870 8.218338 ACTTCACATTTTATCTGCCTGATTAG 57.782 34.615 0.00 0.00 36.65 1.73
2761 2871 8.049117 ACTTCACATTTTATCTGCCTGATTAGA 58.951 33.333 0.00 0.00 36.65 2.10
2762 2872 8.985315 TTCACATTTTATCTGCCTGATTAGAT 57.015 30.769 0.00 0.00 36.65 1.98
2763 2873 8.387190 TCACATTTTATCTGCCTGATTAGATG 57.613 34.615 0.00 0.00 34.50 2.90
2764 2874 7.040892 TCACATTTTATCTGCCTGATTAGATGC 60.041 37.037 0.00 0.00 32.77 3.91
2765 2875 6.774170 ACATTTTATCTGCCTGATTAGATGCA 59.226 34.615 0.00 0.00 32.77 3.96
2766 2876 7.286087 ACATTTTATCTGCCTGATTAGATGCAA 59.714 33.333 0.00 0.00 32.77 4.08
2767 2877 6.624352 TTTATCTGCCTGATTAGATGCAAC 57.376 37.500 0.00 0.00 36.65 4.17
2768 2878 3.632643 TCTGCCTGATTAGATGCAACA 57.367 42.857 0.00 0.00 32.58 3.33
2769 2879 3.954200 TCTGCCTGATTAGATGCAACAA 58.046 40.909 0.00 0.00 32.58 2.83
2770 2880 3.943381 TCTGCCTGATTAGATGCAACAAG 59.057 43.478 0.00 0.00 32.58 3.16
2771 2881 3.943381 CTGCCTGATTAGATGCAACAAGA 59.057 43.478 0.00 0.00 32.58 3.02
2772 2882 3.943381 TGCCTGATTAGATGCAACAAGAG 59.057 43.478 0.00 0.00 0.00 2.85
2773 2883 4.194640 GCCTGATTAGATGCAACAAGAGA 58.805 43.478 0.00 0.00 0.00 3.10
2774 2884 4.637534 GCCTGATTAGATGCAACAAGAGAA 59.362 41.667 0.00 0.00 0.00 2.87
2775 2885 5.220815 GCCTGATTAGATGCAACAAGAGAAG 60.221 44.000 0.00 0.00 0.00 2.85
2776 2886 6.111382 CCTGATTAGATGCAACAAGAGAAGA 58.889 40.000 0.00 0.00 0.00 2.87
2777 2887 6.766944 CCTGATTAGATGCAACAAGAGAAGAT 59.233 38.462 0.00 0.00 0.00 2.40
2778 2888 7.930325 CCTGATTAGATGCAACAAGAGAAGATA 59.070 37.037 0.00 0.00 0.00 1.98
2779 2889 8.654230 TGATTAGATGCAACAAGAGAAGATAC 57.346 34.615 0.00 0.00 0.00 2.24
2780 2890 8.481314 TGATTAGATGCAACAAGAGAAGATACT 58.519 33.333 0.00 0.00 0.00 2.12
2781 2891 8.885494 ATTAGATGCAACAAGAGAAGATACTC 57.115 34.615 0.00 0.00 37.19 2.59
2782 2892 6.291648 AGATGCAACAAGAGAAGATACTCA 57.708 37.500 0.00 0.00 39.14 3.41
2783 2893 6.887013 AGATGCAACAAGAGAAGATACTCAT 58.113 36.000 0.00 0.00 39.14 2.90
2784 2894 8.016301 AGATGCAACAAGAGAAGATACTCATA 57.984 34.615 0.00 0.00 39.14 2.15
2785 2895 8.649591 AGATGCAACAAGAGAAGATACTCATAT 58.350 33.333 0.00 0.00 39.14 1.78
2786 2896 9.920133 GATGCAACAAGAGAAGATACTCATATA 57.080 33.333 0.00 0.00 39.14 0.86
2788 2898 9.534565 TGCAACAAGAGAAGATACTCATATAAC 57.465 33.333 0.00 0.00 39.14 1.89
2789 2899 8.695284 GCAACAAGAGAAGATACTCATATAACG 58.305 37.037 0.00 0.00 39.14 3.18
2790 2900 9.737427 CAACAAGAGAAGATACTCATATAACGT 57.263 33.333 0.00 0.00 39.14 3.99
2793 2903 9.531412 CAAGAGAAGATACTCATATAACGTACG 57.469 37.037 15.01 15.01 39.14 3.67
2794 2904 8.254178 AGAGAAGATACTCATATAACGTACGG 57.746 38.462 21.06 0.00 39.14 4.02
2795 2905 8.093307 AGAGAAGATACTCATATAACGTACGGA 58.907 37.037 21.06 7.45 39.14 4.69
2796 2906 8.789825 AGAAGATACTCATATAACGTACGGAT 57.210 34.615 21.06 14.52 0.00 4.18
2797 2907 9.228949 AGAAGATACTCATATAACGTACGGATT 57.771 33.333 21.06 8.31 0.00 3.01
2798 2908 9.488124 GAAGATACTCATATAACGTACGGATTC 57.512 37.037 21.06 5.28 0.00 2.52
2799 2909 7.682824 AGATACTCATATAACGTACGGATTCG 58.317 38.462 21.06 7.21 43.02 3.34
2800 2910 5.929697 ACTCATATAACGTACGGATTCGA 57.070 39.130 21.06 10.67 40.11 3.71
2801 2911 6.492007 ACTCATATAACGTACGGATTCGAT 57.508 37.500 21.06 5.74 40.11 3.59
2802 2912 6.541086 ACTCATATAACGTACGGATTCGATC 58.459 40.000 21.06 0.00 40.11 3.69
2803 2913 6.148315 ACTCATATAACGTACGGATTCGATCA 59.852 38.462 21.06 0.00 40.11 2.92
2804 2914 7.080353 TCATATAACGTACGGATTCGATCAT 57.920 36.000 21.06 0.00 40.11 2.45
2805 2915 8.200364 TCATATAACGTACGGATTCGATCATA 57.800 34.615 21.06 0.96 40.11 2.15
2806 2916 8.667463 TCATATAACGTACGGATTCGATCATAA 58.333 33.333 21.06 0.00 40.11 1.90
2807 2917 8.944927 CATATAACGTACGGATTCGATCATAAG 58.055 37.037 21.06 0.00 40.11 1.73
2808 2918 5.428496 AACGTACGGATTCGATCATAAGA 57.572 39.130 21.06 0.00 40.11 2.10
2809 2919 5.624344 ACGTACGGATTCGATCATAAGAT 57.376 39.130 21.06 0.00 40.11 2.40
2810 2920 6.732531 ACGTACGGATTCGATCATAAGATA 57.267 37.500 21.06 0.00 40.11 1.98
2811 2921 6.773080 ACGTACGGATTCGATCATAAGATAG 58.227 40.000 21.06 0.00 40.11 2.08
2812 2922 6.592994 ACGTACGGATTCGATCATAAGATAGA 59.407 38.462 21.06 0.00 40.11 1.98
2813 2923 7.118825 ACGTACGGATTCGATCATAAGATAGAA 59.881 37.037 21.06 6.05 45.65 2.10
2814 2924 7.425882 CGTACGGATTCGATCATAAGATAGAAC 59.574 40.741 7.57 1.91 44.82 3.01
2815 2925 7.455641 ACGGATTCGATCATAAGATAGAACT 57.544 36.000 0.00 0.00 44.82 3.01
2816 2926 7.531716 ACGGATTCGATCATAAGATAGAACTC 58.468 38.462 0.00 5.61 44.82 3.01
2817 2927 6.970043 CGGATTCGATCATAAGATAGAACTCC 59.030 42.308 5.77 11.38 44.82 3.85
2820 2930 9.997482 GATTCGATCATAAGATAGAACTCCTAC 57.003 37.037 5.77 0.00 44.82 3.18
2833 2943 4.225042 AGAACTCCTACACATGCCAATACA 59.775 41.667 0.00 0.00 0.00 2.29
2847 2957 6.154203 TGCCAATACATTGAAGTTGAACAA 57.846 33.333 3.48 0.00 40.14 2.83
2872 2982 5.184892 AGCAGATTCTACATTTCAACCCT 57.815 39.130 0.00 0.00 0.00 4.34
2873 2983 4.946157 AGCAGATTCTACATTTCAACCCTG 59.054 41.667 0.00 0.00 0.00 4.45
2878 2988 5.643379 TTCTACATTTCAACCCTGCAATC 57.357 39.130 0.00 0.00 0.00 2.67
2887 2997 0.389426 ACCCTGCAATCGTCGTGTAC 60.389 55.000 0.00 0.00 0.00 2.90
2896 3006 3.861276 ATCGTCGTGTACCTCAAATCA 57.139 42.857 0.00 0.00 0.00 2.57
2903 3013 6.040247 GTCGTGTACCTCAAATCATACATCA 58.960 40.000 0.00 0.00 30.67 3.07
2920 3030 9.733556 TCATACATCACTTTTGGTTTACATAGT 57.266 29.630 0.00 0.00 0.00 2.12
2925 3035 7.883391 TCACTTTTGGTTTACATAGTTTGGA 57.117 32.000 0.00 0.00 0.00 3.53
2926 3036 7.708998 TCACTTTTGGTTTACATAGTTTGGAC 58.291 34.615 0.00 0.00 0.00 4.02
2927 3037 7.339721 TCACTTTTGGTTTACATAGTTTGGACA 59.660 33.333 0.00 0.00 0.00 4.02
2928 3038 8.141268 CACTTTTGGTTTACATAGTTTGGACAT 58.859 33.333 0.00 0.00 0.00 3.06
2930 3040 9.191995 CTTTTGGTTTACATAGTTTGGACATTC 57.808 33.333 0.00 0.00 0.00 2.67
2946 3056 4.058124 GACATTCAAAAAGGCTTTCCCAC 58.942 43.478 13.76 0.00 35.39 4.61
2979 3089 2.375174 TGAATGGTAGGGTGCAAGAAGT 59.625 45.455 0.00 0.00 0.00 3.01
2995 3105 4.388577 AGAAGTCTGTTATTTGCCCCTT 57.611 40.909 0.00 0.00 0.00 3.95
2997 3107 5.887754 AGAAGTCTGTTATTTGCCCCTTAA 58.112 37.500 0.00 0.00 0.00 1.85
3032 3145 8.059798 ACGAATAGCAGTAGTTTAGAAACCTA 57.940 34.615 1.52 0.00 39.71 3.08
3040 3153 7.585210 GCAGTAGTTTAGAAACCTAAAACAACG 59.415 37.037 1.52 0.00 37.72 4.10
3068 3181 6.636705 TCGTGTGCCATAGTTATCTACTTTT 58.363 36.000 0.00 0.00 38.33 2.27
3070 3183 6.018994 CGTGTGCCATAGTTATCTACTTTTCC 60.019 42.308 0.00 0.00 38.33 3.13
3090 3203 9.399403 CTTTTCCTGCTCAAATAAACTAGTTTC 57.601 33.333 23.76 8.82 34.23 2.78
3129 3242 6.971184 CCTGTAATGCTCAAATGATCTTCAAC 59.029 38.462 0.00 0.00 0.00 3.18
3144 3257 6.367149 TGATCTTCAACGTTGAGAGAAATCAG 59.633 38.462 29.56 22.66 38.61 2.90
3602 3729 0.041839 GATTAGCACGAAGGCATGCG 60.042 55.000 12.44 0.00 46.74 4.73
3623 3750 2.736192 GCAGAGAAGAGAGTGCTTTCAC 59.264 50.000 0.00 0.00 43.44 3.18
3757 3887 3.543680 TCCTACAGTGCCAAGCTAATC 57.456 47.619 0.00 0.00 0.00 1.75
3793 3923 5.733676 TGACAGTGTACAGAATGCATATGT 58.266 37.500 18.37 18.37 42.53 2.29
3794 3924 6.872920 TGACAGTGTACAGAATGCATATGTA 58.127 36.000 16.70 16.70 42.53 2.29
3815 3945 7.924358 TGTATAGGAAGGGTAATGAGCTAAA 57.076 36.000 0.00 0.00 0.00 1.85
3858 3988 6.987992 ACCGAGTATAGATCTAGCTACTATGC 59.012 42.308 13.60 9.89 32.35 3.14
3922 4052 5.786401 AACTGAATAAGCAATCGACAGTC 57.214 39.130 0.00 0.00 36.36 3.51
3963 4093 7.446001 AACTTCCAAAATTTGAAGTTGCAAA 57.554 28.000 24.74 0.00 43.55 3.68
4004 4134 4.378356 GCAAATACTGCGACTGAAATGACA 60.378 41.667 0.00 0.00 42.37 3.58
4005 4135 4.928661 AATACTGCGACTGAAATGACAC 57.071 40.909 0.00 0.00 0.00 3.67
4051 4181 7.154656 GCAATTTACCCAGTTTCTTTCTTCAT 58.845 34.615 0.00 0.00 0.00 2.57
4092 4506 8.637986 TCAGGTTACAAATTTAATTCAGTGCTT 58.362 29.630 0.00 0.00 0.00 3.91
4300 4720 7.759886 TGATTTATGGACTAGATATGCGCTTAC 59.240 37.037 9.73 2.02 0.00 2.34
4301 4721 6.584185 TTATGGACTAGATATGCGCTTACA 57.416 37.500 9.73 0.00 0.00 2.41
4303 4723 3.889538 TGGACTAGATATGCGCTTACAGT 59.110 43.478 9.73 10.90 0.00 3.55
4313 4733 1.128692 GCGCTTACAGTGTGTGAATCC 59.871 52.381 5.88 0.00 0.00 3.01
4315 4735 3.845178 CGCTTACAGTGTGTGAATCCTA 58.155 45.455 5.88 0.00 0.00 2.94
4388 4813 3.593442 AGTGATGGTCCTGTTTTTCCA 57.407 42.857 0.00 0.00 0.00 3.53
4390 4815 3.636764 AGTGATGGTCCTGTTTTTCCAAC 59.363 43.478 0.00 0.00 33.55 3.77
4794 5221 2.743938 CGCACTACAGTTTCTGTCAGT 58.256 47.619 5.66 6.09 41.21 3.41
4896 5323 3.423539 TTCAGCTGCTGTTTCACCTAT 57.576 42.857 27.24 0.00 32.61 2.57
4971 5399 3.708563 TTGGTGAGTTACTTTGCTTGC 57.291 42.857 0.00 0.00 0.00 4.01
4973 5401 1.953686 GGTGAGTTACTTTGCTTGCCA 59.046 47.619 0.00 0.00 0.00 4.92
5000 5428 2.876091 TCTGGATCTCTGTTAAACGCG 58.124 47.619 3.53 3.53 0.00 6.01
5007 5435 5.919141 GGATCTCTGTTAAACGCGTACATAT 59.081 40.000 14.46 7.51 0.00 1.78
5165 5597 6.790285 CAAAATTTGCTAAAGACATGGCTT 57.210 33.333 8.40 8.40 0.00 4.35
5184 5616 5.424895 TGGCTTGCCCTATTTTGATAACAAT 59.575 36.000 9.35 0.00 35.85 2.71
5185 5617 5.754890 GGCTTGCCCTATTTTGATAACAATG 59.245 40.000 0.00 0.00 35.85 2.82
5221 5653 4.581309 TGATCTCCCTTTCTGAAGCAAT 57.419 40.909 0.00 0.00 0.00 3.56
5227 5659 3.025978 CCCTTTCTGAAGCAATATGGCA 58.974 45.455 4.54 0.00 35.83 4.92
5251 5683 7.250569 CACTTTGCTTTTTGAACTAGACTTGA 58.749 34.615 0.00 0.00 0.00 3.02
5258 5690 9.980780 GCTTTTTGAACTAGACTTGAATATCTC 57.019 33.333 0.00 0.00 0.00 2.75
5260 5692 9.706691 TTTTTGAACTAGACTTGAATATCTCGT 57.293 29.630 0.00 0.00 0.00 4.18
5261 5693 8.912787 TTTGAACTAGACTTGAATATCTCGTC 57.087 34.615 0.00 0.00 0.00 4.20
5262 5694 7.625828 TGAACTAGACTTGAATATCTCGTCA 57.374 36.000 0.00 0.00 0.00 4.35
5263 5695 8.226819 TGAACTAGACTTGAATATCTCGTCAT 57.773 34.615 0.00 0.00 0.00 3.06
5264 5696 8.131731 TGAACTAGACTTGAATATCTCGTCATG 58.868 37.037 0.00 0.00 0.00 3.07
5265 5697 7.575414 ACTAGACTTGAATATCTCGTCATGT 57.425 36.000 0.00 0.00 35.51 3.21
5266 5698 7.644490 ACTAGACTTGAATATCTCGTCATGTC 58.356 38.462 0.00 10.84 43.81 3.06
5267 5699 6.707440 AGACTTGAATATCTCGTCATGTCT 57.293 37.500 13.81 13.81 46.37 3.41
5304 5736 7.016153 ACTATTGGTTGAGTGTAGATTTGGA 57.984 36.000 0.00 0.00 0.00 3.53
5305 5737 7.458397 ACTATTGGTTGAGTGTAGATTTGGAA 58.542 34.615 0.00 0.00 0.00 3.53
5306 5738 8.109634 ACTATTGGTTGAGTGTAGATTTGGAAT 58.890 33.333 0.00 0.00 0.00 3.01
5307 5739 7.781324 ATTGGTTGAGTGTAGATTTGGAATT 57.219 32.000 0.00 0.00 0.00 2.17
5308 5740 7.595819 TTGGTTGAGTGTAGATTTGGAATTT 57.404 32.000 0.00 0.00 0.00 1.82
5309 5741 6.980593 TGGTTGAGTGTAGATTTGGAATTTG 58.019 36.000 0.00 0.00 0.00 2.32
5310 5742 6.015519 TGGTTGAGTGTAGATTTGGAATTTGG 60.016 38.462 0.00 0.00 0.00 3.28
5314 5746 5.640147 AGTGTAGATTTGGAATTTGGTCCA 58.360 37.500 0.00 0.00 46.24 4.02
5331 5763 4.023878 TGGTCCAAATTCTTAAACCGTTCG 60.024 41.667 0.00 0.00 0.00 3.95
5341 5779 5.571277 TCTTAAACCGTTCGTTTTTCCTTG 58.429 37.500 0.00 0.00 42.15 3.61
5348 5786 0.590230 TCGTTTTTCCTTGCAACGCG 60.590 50.000 3.53 3.53 42.39 6.01
5359 5797 0.179176 TGCAACGCGTAATTCCATGC 60.179 50.000 19.81 19.81 0.00 4.06
5362 5800 0.450184 AACGCGTAATTCCATGCACC 59.550 50.000 14.46 0.00 0.00 5.01
5364 5802 1.134640 ACGCGTAATTCCATGCACCTA 60.135 47.619 11.67 0.00 0.00 3.08
5384 5822 4.040952 CCTATGGTCCCTAGGAGTGATTTG 59.959 50.000 11.48 0.00 38.44 2.32
5391 5829 3.181450 CCCTAGGAGTGATTTGGATGGTC 60.181 52.174 11.48 0.00 0.00 4.02
5395 5833 2.091665 GGAGTGATTTGGATGGTCCCAT 60.092 50.000 0.00 0.00 39.69 4.00
5412 5850 1.655484 CATTGCGGTGCTGACTGATA 58.345 50.000 0.00 0.00 0.00 2.15
5416 5854 0.179073 GCGGTGCTGACTGATATGGT 60.179 55.000 0.00 0.00 0.00 3.55
5417 5855 1.575244 CGGTGCTGACTGATATGGTG 58.425 55.000 0.00 0.00 0.00 4.17
5419 5857 2.283298 GGTGCTGACTGATATGGTGTG 58.717 52.381 0.00 0.00 0.00 3.82
5422 5860 4.115516 GTGCTGACTGATATGGTGTGTAG 58.884 47.826 0.00 0.00 0.00 2.74
5430 5869 5.661312 ACTGATATGGTGTGTAGGTGTATGT 59.339 40.000 0.00 0.00 0.00 2.29
5432 5871 3.627395 ATGGTGTGTAGGTGTATGTGG 57.373 47.619 0.00 0.00 0.00 4.17
5457 5896 0.534203 CCAGTTGGCTACCGTGTGTT 60.534 55.000 0.00 0.00 0.00 3.32
5460 5899 1.018910 GTTGGCTACCGTGTGTTTGT 58.981 50.000 0.00 0.00 0.00 2.83
5463 5902 1.301423 GGCTACCGTGTGTTTGTCAA 58.699 50.000 0.00 0.00 0.00 3.18
5464 5903 1.671845 GGCTACCGTGTGTTTGTCAAA 59.328 47.619 0.00 0.00 0.00 2.69
5465 5904 2.286772 GGCTACCGTGTGTTTGTCAAAG 60.287 50.000 0.00 0.00 0.00 2.77
5468 5907 3.926821 ACCGTGTGTTTGTCAAAGTTT 57.073 38.095 0.00 0.00 0.00 2.66
5469 5908 3.570559 ACCGTGTGTTTGTCAAAGTTTG 58.429 40.909 9.44 9.44 0.00 2.93
5473 5912 5.387958 CCGTGTGTTTGTCAAAGTTTGAAAC 60.388 40.000 19.63 19.59 42.15 2.78
5474 5913 5.174035 CGTGTGTTTGTCAAAGTTTGAAACA 59.826 36.000 22.98 22.98 42.15 2.83
5475 5914 6.580476 GTGTGTTTGTCAAAGTTTGAAACAG 58.420 36.000 25.59 0.11 42.15 3.16
5479 5918 5.730296 TTGTCAAAGTTTGAAACAGGGAA 57.270 34.783 19.63 0.00 42.15 3.97
5480 5919 5.066968 TGTCAAAGTTTGAAACAGGGAAC 57.933 39.130 19.63 5.71 42.15 3.62
5483 5922 5.929415 GTCAAAGTTTGAAACAGGGAACAAA 59.071 36.000 19.63 0.00 42.15 2.83
5484 5923 6.593770 GTCAAAGTTTGAAACAGGGAACAAAT 59.406 34.615 19.63 0.00 42.15 2.32
5532 6038 5.514500 TCCATATTATAGTTTGAGGGCCC 57.486 43.478 16.46 16.46 0.00 5.80
5535 6041 6.046643 TCCATATTATAGTTTGAGGGCCCATT 59.953 38.462 27.56 2.92 0.00 3.16
5543 6049 1.965414 TGAGGGCCCATTCTCTGTTA 58.035 50.000 27.56 0.00 0.00 2.41
5545 6051 1.559682 GAGGGCCCATTCTCTGTTACA 59.440 52.381 27.56 0.00 0.00 2.41
5546 6052 2.173569 GAGGGCCCATTCTCTGTTACAT 59.826 50.000 27.56 0.00 0.00 2.29
5547 6053 3.391296 GAGGGCCCATTCTCTGTTACATA 59.609 47.826 27.56 0.00 0.00 2.29
5548 6054 3.983410 AGGGCCCATTCTCTGTTACATAT 59.017 43.478 27.56 0.00 0.00 1.78
5549 6055 5.162637 AGGGCCCATTCTCTGTTACATATA 58.837 41.667 27.56 0.00 0.00 0.86
5550 6056 5.610982 AGGGCCCATTCTCTGTTACATATAA 59.389 40.000 27.56 0.00 0.00 0.98
5554 6060 9.686683 GGCCCATTCTCTGTTACATATAAATAT 57.313 33.333 0.00 0.00 0.00 1.28
5580 6086 8.752005 ATAACTACATTGTCCATGCAAATAGT 57.248 30.769 0.00 0.00 36.63 2.12
5581 6087 7.466746 AACTACATTGTCCATGCAAATAGTT 57.533 32.000 14.03 14.03 38.31 2.24
5582 6088 7.466746 ACTACATTGTCCATGCAAATAGTTT 57.533 32.000 0.00 0.00 36.14 2.66
5583 6089 7.895759 ACTACATTGTCCATGCAAATAGTTTT 58.104 30.769 0.00 0.00 36.14 2.43
5584 6090 7.814107 ACTACATTGTCCATGCAAATAGTTTTG 59.186 33.333 0.00 0.00 44.18 2.44
5585 6091 6.757237 ACATTGTCCATGCAAATAGTTTTGA 58.243 32.000 0.00 0.00 43.25 2.69
5586 6092 6.869913 ACATTGTCCATGCAAATAGTTTTGAG 59.130 34.615 0.00 0.00 43.25 3.02
5587 6093 6.403866 TTGTCCATGCAAATAGTTTTGAGT 57.596 33.333 0.00 0.00 44.11 3.41
5588 6094 5.771469 TGTCCATGCAAATAGTTTTGAGTG 58.229 37.500 0.00 1.00 44.11 3.51
5589 6095 4.622740 GTCCATGCAAATAGTTTTGAGTGC 59.377 41.667 0.00 0.00 44.11 4.40
5590 6096 3.609373 CCATGCAAATAGTTTTGAGTGCG 59.391 43.478 0.00 0.00 44.11 5.34
5591 6097 4.475028 CATGCAAATAGTTTTGAGTGCGA 58.525 39.130 0.00 0.00 44.11 5.10
5592 6098 4.560136 TGCAAATAGTTTTGAGTGCGAA 57.440 36.364 2.78 0.00 44.11 4.70
5593 6099 5.119931 TGCAAATAGTTTTGAGTGCGAAT 57.880 34.783 2.78 0.00 44.11 3.34
5594 6100 5.527951 TGCAAATAGTTTTGAGTGCGAATT 58.472 33.333 2.78 0.00 44.11 2.17
5595 6101 5.629020 TGCAAATAGTTTTGAGTGCGAATTC 59.371 36.000 2.78 0.00 44.11 2.17
5596 6102 5.858581 GCAAATAGTTTTGAGTGCGAATTCT 59.141 36.000 3.52 0.00 44.11 2.40
5597 6103 6.032880 GCAAATAGTTTTGAGTGCGAATTCTC 59.967 38.462 3.52 0.00 44.11 2.87
5598 6104 7.301054 CAAATAGTTTTGAGTGCGAATTCTCT 58.699 34.615 3.52 0.00 44.11 3.10
5599 6105 4.739046 AGTTTTGAGTGCGAATTCTCTG 57.261 40.909 3.52 0.00 0.00 3.35
5600 6106 4.130118 AGTTTTGAGTGCGAATTCTCTGT 58.870 39.130 3.52 0.00 0.00 3.41
5601 6107 4.212214 AGTTTTGAGTGCGAATTCTCTGTC 59.788 41.667 3.52 0.00 0.00 3.51
5602 6108 3.385193 TTGAGTGCGAATTCTCTGTCA 57.615 42.857 3.52 0.49 0.00 3.58
5603 6109 2.677199 TGAGTGCGAATTCTCTGTCAC 58.323 47.619 3.52 4.18 0.00 3.67
5604 6110 2.035832 TGAGTGCGAATTCTCTGTCACA 59.964 45.455 3.52 0.00 0.00 3.58
5605 6111 3.257393 GAGTGCGAATTCTCTGTCACAT 58.743 45.455 3.52 0.00 0.00 3.21
5606 6112 4.082245 TGAGTGCGAATTCTCTGTCACATA 60.082 41.667 3.52 0.00 0.00 2.29
5607 6113 5.016051 AGTGCGAATTCTCTGTCACATAT 57.984 39.130 3.52 0.00 0.00 1.78
5608 6114 6.149129 AGTGCGAATTCTCTGTCACATATA 57.851 37.500 3.52 0.00 0.00 0.86
5609 6115 6.573434 AGTGCGAATTCTCTGTCACATATAA 58.427 36.000 3.52 0.00 0.00 0.98
5610 6116 7.212976 AGTGCGAATTCTCTGTCACATATAAT 58.787 34.615 3.52 0.00 0.00 1.28
5611 6117 7.712639 AGTGCGAATTCTCTGTCACATATAATT 59.287 33.333 3.52 0.00 0.00 1.40
5612 6118 8.978539 GTGCGAATTCTCTGTCACATATAATTA 58.021 33.333 3.52 0.00 0.00 1.40
5613 6119 9.541143 TGCGAATTCTCTGTCACATATAATTAA 57.459 29.630 3.52 0.00 0.00 1.40
5648 6154 6.808212 GTGTATAGTGTGATGCTTGCAAAATT 59.192 34.615 0.00 0.00 0.00 1.82
5654 6160 6.707161 AGTGTGATGCTTGCAAAATTTTGTAT 59.293 30.769 27.13 11.70 40.24 2.29
5656 6162 6.073167 TGTGATGCTTGCAAAATTTTGTATGG 60.073 34.615 27.13 19.70 40.24 2.74
5658 6164 6.485984 TGATGCTTGCAAAATTTTGTATGGTT 59.514 30.769 27.13 12.01 40.24 3.67
5661 6167 6.989169 TGCTTGCAAAATTTTGTATGGTTAGT 59.011 30.769 27.13 0.00 40.24 2.24
5675 6182 5.757099 ATGGTTAGTAACAGCCTTGTAGT 57.243 39.130 14.81 0.00 36.23 2.73
5677 6184 4.251268 GGTTAGTAACAGCCTTGTAGTGG 58.749 47.826 14.81 0.00 36.23 4.00
5679 6186 3.679824 AGTAACAGCCTTGTAGTGGTC 57.320 47.619 0.00 0.00 36.23 4.02
5745 6252 3.123620 GCAGCTCAAGTCAGCCGG 61.124 66.667 0.00 0.00 40.65 6.13
5755 6262 1.598130 GTCAGCCGGCAGACAAACT 60.598 57.895 38.05 11.00 33.48 2.66
5805 6312 2.961741 CAGCTGGAGATAGCAGGAGTAA 59.038 50.000 5.57 0.00 46.07 2.24
5823 6330 8.908903 CAGGAGTAATTAGAAGAAGAGAGCTTA 58.091 37.037 0.00 0.00 33.61 3.09
5840 6347 1.789464 CTTAGCGCGGTCTGATGAATC 59.211 52.381 16.92 0.00 0.00 2.52
5843 6350 0.726827 GCGCGGTCTGATGAATCAAA 59.273 50.000 8.83 0.00 36.18 2.69
5844 6351 1.267732 GCGCGGTCTGATGAATCAAAG 60.268 52.381 8.83 0.00 36.18 2.77
5845 6352 2.002586 CGCGGTCTGATGAATCAAAGT 58.997 47.619 0.00 0.00 36.18 2.66
5846 6353 2.416547 CGCGGTCTGATGAATCAAAGTT 59.583 45.455 0.00 0.00 36.18 2.66
5855 6390 6.040729 TCTGATGAATCAAAGTTTTGGAGCAA 59.959 34.615 4.89 0.00 38.66 3.91
5887 6422 7.040062 ACTCTTGTAGCTGATGATATGGAGTAC 60.040 40.741 0.00 0.00 0.00 2.73
5888 6423 7.007116 TCTTGTAGCTGATGATATGGAGTACT 58.993 38.462 0.00 0.00 0.00 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.128919 AGGGTTGAATTAGCATGTCTGATC 58.871 41.667 0.00 0.00 0.00 2.92
2 3 4.574674 AGGGTTGAATTAGCATGTCTGA 57.425 40.909 0.00 0.00 0.00 3.27
16 17 0.685097 GCGATAGGCCATAGGGTTGA 59.315 55.000 5.01 0.00 36.17 3.18
17 18 3.233355 GCGATAGGCCATAGGGTTG 57.767 57.895 5.01 0.00 36.17 3.77
28 29 3.824414 ACAAAAACTTTCGGCGATAGG 57.176 42.857 26.73 15.33 0.00 2.57
59 62 1.077068 CGCTCACTCTCCTCCTCCT 60.077 63.158 0.00 0.00 0.00 3.69
61 64 0.393808 ACTCGCTCACTCTCCTCCTC 60.394 60.000 0.00 0.00 0.00 3.71
62 65 0.679640 CACTCGCTCACTCTCCTCCT 60.680 60.000 0.00 0.00 0.00 3.69
63 66 0.678366 TCACTCGCTCACTCTCCTCC 60.678 60.000 0.00 0.00 0.00 4.30
65 68 0.037590 ACTCACTCGCTCACTCTCCT 59.962 55.000 0.00 0.00 0.00 3.69
72 75 2.560981 TCATGGTAAACTCACTCGCTCA 59.439 45.455 0.00 0.00 0.00 4.26
74 77 3.678056 TTCATGGTAAACTCACTCGCT 57.322 42.857 0.00 0.00 0.00 4.93
76 79 4.213270 TGCTTTTCATGGTAAACTCACTCG 59.787 41.667 0.00 0.00 0.00 4.18
78 81 5.133221 ACTGCTTTTCATGGTAAACTCACT 58.867 37.500 0.00 0.00 0.00 3.41
79 82 5.008613 TGACTGCTTTTCATGGTAAACTCAC 59.991 40.000 0.00 0.00 0.00 3.51
81 84 5.239525 AGTGACTGCTTTTCATGGTAAACTC 59.760 40.000 0.00 0.00 0.00 3.01
82 85 5.009010 CAGTGACTGCTTTTCATGGTAAACT 59.991 40.000 0.00 0.00 0.00 2.66
84 87 5.129634 TCAGTGACTGCTTTTCATGGTAAA 58.870 37.500 7.93 0.00 0.00 2.01
85 88 4.713553 TCAGTGACTGCTTTTCATGGTAA 58.286 39.130 7.93 0.00 0.00 2.85
86 89 4.350368 TCAGTGACTGCTTTTCATGGTA 57.650 40.909 7.93 0.00 0.00 3.25
87 90 3.213206 TCAGTGACTGCTTTTCATGGT 57.787 42.857 7.93 0.00 0.00 3.55
88 91 4.572985 TTTCAGTGACTGCTTTTCATGG 57.427 40.909 7.93 0.00 0.00 3.66
89 92 5.806502 TGTTTTTCAGTGACTGCTTTTCATG 59.193 36.000 7.93 0.00 0.00 3.07
90 93 5.964758 TGTTTTTCAGTGACTGCTTTTCAT 58.035 33.333 7.93 0.00 0.00 2.57
91 94 5.384063 TGTTTTTCAGTGACTGCTTTTCA 57.616 34.783 7.93 1.94 0.00 2.69
92 95 6.586082 TCTTTGTTTTTCAGTGACTGCTTTTC 59.414 34.615 7.93 0.00 0.00 2.29
93 96 6.454795 TCTTTGTTTTTCAGTGACTGCTTTT 58.545 32.000 7.93 0.00 0.00 2.27
94 97 6.024552 TCTTTGTTTTTCAGTGACTGCTTT 57.975 33.333 7.93 0.00 0.00 3.51
95 98 5.643379 TCTTTGTTTTTCAGTGACTGCTT 57.357 34.783 7.93 0.00 0.00 3.91
96 99 5.357878 TCATCTTTGTTTTTCAGTGACTGCT 59.642 36.000 7.93 0.00 0.00 4.24
97 100 5.581605 TCATCTTTGTTTTTCAGTGACTGC 58.418 37.500 7.93 0.00 0.00 4.40
198 201 1.069090 CATTGCCATGGCCATGCTC 59.931 57.895 36.08 28.29 37.43 4.26
207 210 1.447140 GTGCACTGCCATTGCCATG 60.447 57.895 10.32 0.00 39.39 3.66
208 211 1.608336 AGTGCACTGCCATTGCCAT 60.608 52.632 20.97 0.00 39.39 4.40
378 386 1.583495 CCTCTCTCACGCACGTGGTA 61.583 60.000 21.73 10.12 45.43 3.25
407 415 3.023950 GCGTTGCGTTTACACCCA 58.976 55.556 0.00 0.00 0.00 4.51
418 426 3.002656 TCATACTAGTACTACCGCGTTGC 59.997 47.826 4.31 0.00 0.00 4.17
419 427 4.801147 TCATACTAGTACTACCGCGTTG 57.199 45.455 4.31 0.00 0.00 4.10
420 428 4.635765 TGTTCATACTAGTACTACCGCGTT 59.364 41.667 4.31 0.00 0.00 4.84
421 429 4.191544 TGTTCATACTAGTACTACCGCGT 58.808 43.478 4.31 0.00 0.00 6.01
422 430 4.272018 ACTGTTCATACTAGTACTACCGCG 59.728 45.833 4.31 0.00 0.00 6.46
423 431 5.557893 CGACTGTTCATACTAGTACTACCGC 60.558 48.000 4.31 0.00 0.00 5.68
424 432 5.750547 TCGACTGTTCATACTAGTACTACCG 59.249 44.000 4.31 3.27 0.00 4.02
425 433 7.359097 CGATCGACTGTTCATACTAGTACTACC 60.359 44.444 10.26 0.00 0.00 3.18
426 434 7.359097 CCGATCGACTGTTCATACTAGTACTAC 60.359 44.444 18.66 4.53 0.00 2.73
427 435 6.644181 CCGATCGACTGTTCATACTAGTACTA 59.356 42.308 18.66 1.89 0.00 1.82
428 436 5.466058 CCGATCGACTGTTCATACTAGTACT 59.534 44.000 18.66 0.00 0.00 2.73
447 455 1.861575 GCGAATCTTTCCTGACCGATC 59.138 52.381 0.00 0.00 0.00 3.69
450 458 1.999051 CGCGAATCTTTCCTGACCG 59.001 57.895 0.00 0.00 0.00 4.79
451 459 1.706287 GGCGCGAATCTTTCCTGACC 61.706 60.000 12.10 0.00 0.00 4.02
509 517 2.745492 GTGTCAGCCTGAGCCTGC 60.745 66.667 0.00 0.00 41.25 4.85
644 657 1.436600 CACTGCTCCTTGCTACACAG 58.563 55.000 0.00 0.00 43.37 3.66
646 659 0.603707 TGCACTGCTCCTTGCTACAC 60.604 55.000 1.98 0.00 43.37 2.90
647 660 0.603707 GTGCACTGCTCCTTGCTACA 60.604 55.000 10.32 0.00 43.37 2.74
648 661 0.321122 AGTGCACTGCTCCTTGCTAC 60.321 55.000 20.97 0.00 43.37 3.58
649 662 0.321034 CAGTGCACTGCTCCTTGCTA 60.321 55.000 32.39 0.00 43.37 3.49
650 663 1.600076 CAGTGCACTGCTCCTTGCT 60.600 57.895 32.39 0.00 43.37 3.91
651 664 1.168407 TTCAGTGCACTGCTCCTTGC 61.168 55.000 36.76 0.00 43.46 4.01
652 665 1.311859 TTTCAGTGCACTGCTCCTTG 58.688 50.000 36.76 16.85 43.46 3.61
653 666 2.057137 TTTTCAGTGCACTGCTCCTT 57.943 45.000 36.76 4.13 43.46 3.36
654 667 2.057137 TTTTTCAGTGCACTGCTCCT 57.943 45.000 36.76 4.95 43.46 3.69
802 873 2.281900 TTTTGTTCTCGGGCCGGG 60.282 61.111 27.98 25.48 0.00 5.73
803 874 0.320946 TACTTTTGTTCTCGGGCCGG 60.321 55.000 27.98 17.02 0.00 6.13
804 875 0.794473 GTACTTTTGTTCTCGGGCCG 59.206 55.000 22.51 22.51 0.00 6.13
805 876 1.886886 TGTACTTTTGTTCTCGGGCC 58.113 50.000 0.00 0.00 0.00 5.80
806 877 3.059120 GTCTTGTACTTTTGTTCTCGGGC 60.059 47.826 0.00 0.00 0.00 6.13
807 878 3.497262 GGTCTTGTACTTTTGTTCTCGGG 59.503 47.826 0.00 0.00 0.00 5.14
808 879 3.497262 GGGTCTTGTACTTTTGTTCTCGG 59.503 47.826 0.00 0.00 0.00 4.63
809 880 4.025145 GTGGGTCTTGTACTTTTGTTCTCG 60.025 45.833 0.00 0.00 0.00 4.04
810 881 4.275196 GGTGGGTCTTGTACTTTTGTTCTC 59.725 45.833 0.00 0.00 0.00 2.87
1173 1254 1.882311 GGCAATGTGGACGCAATGA 59.118 52.632 5.19 0.00 0.00 2.57
1177 1258 3.047280 GACGGCAATGTGGACGCA 61.047 61.111 0.00 0.00 45.15 5.24
1308 1393 1.614241 ATCCCTTGCTTACGCGGAGT 61.614 55.000 12.47 0.00 39.65 3.85
1477 1563 4.308458 CACCGACCCACCGAGCAA 62.308 66.667 0.00 0.00 0.00 3.91
1511 1597 2.035442 GCGTCCCTCTCAGCAAACC 61.035 63.158 0.00 0.00 0.00 3.27
1632 1727 4.463879 CCTCTGGGAGCTGTGGCG 62.464 72.222 0.00 0.00 44.37 5.69
1633 1728 3.325753 ACCTCTGGGAGCTGTGGC 61.326 66.667 0.00 0.00 36.25 5.01
1749 1853 3.117171 CCTCGTCCTCGTCGTCGT 61.117 66.667 1.33 0.00 38.33 4.34
1757 1861 2.188161 CGTAGCCTCCCTCGTCCTC 61.188 68.421 0.00 0.00 0.00 3.71
1758 1862 2.124236 CGTAGCCTCCCTCGTCCT 60.124 66.667 0.00 0.00 0.00 3.85
1759 1863 2.124403 TCGTAGCCTCCCTCGTCC 60.124 66.667 0.00 0.00 0.00 4.79
1762 1866 4.253257 GCGTCGTAGCCTCCCTCG 62.253 72.222 0.00 0.00 0.00 4.63
1801 1905 4.516195 GAGAAGGAGTCGCCGGCC 62.516 72.222 23.46 7.92 43.43 6.13
1841 1945 1.152440 ATGTAGAGCGGGAGGGGAG 60.152 63.158 0.00 0.00 0.00 4.30
1849 1953 1.600957 CAAAGGCATCATGTAGAGCGG 59.399 52.381 0.00 0.00 0.00 5.52
1853 1957 3.609853 GACACCAAAGGCATCATGTAGA 58.390 45.455 0.00 0.00 0.00 2.59
1869 1979 2.128035 CACTTCACTTCACTCGACACC 58.872 52.381 0.00 0.00 0.00 4.16
1885 1995 5.591099 CCAACAAACAGTAAGCAATCACTT 58.409 37.500 0.00 0.00 0.00 3.16
2494 2604 2.124570 CCTGGCATGAGAACCCCG 60.125 66.667 0.00 0.00 0.00 5.73
2542 2652 0.179936 CATCCCCACTTCTGGCTCTC 59.820 60.000 0.00 0.00 36.00 3.20
2626 2736 1.493772 TAAGTGTTTCTGTCCACGCG 58.506 50.000 3.53 3.53 36.69 6.01
2729 2839 6.434028 AGGCAGATAAAATGTGAAGTAGCAAA 59.566 34.615 0.00 0.00 0.00 3.68
2730 2840 5.945784 AGGCAGATAAAATGTGAAGTAGCAA 59.054 36.000 0.00 0.00 0.00 3.91
2731 2841 5.355071 CAGGCAGATAAAATGTGAAGTAGCA 59.645 40.000 0.00 0.00 0.00 3.49
2732 2842 5.586243 TCAGGCAGATAAAATGTGAAGTAGC 59.414 40.000 0.00 0.00 0.00 3.58
2733 2843 7.798596 ATCAGGCAGATAAAATGTGAAGTAG 57.201 36.000 0.00 0.00 34.43 2.57
2734 2844 9.330063 CTAATCAGGCAGATAAAATGTGAAGTA 57.670 33.333 0.00 0.00 35.39 2.24
2735 2845 8.049117 TCTAATCAGGCAGATAAAATGTGAAGT 58.951 33.333 0.00 0.00 35.39 3.01
2736 2846 8.442632 TCTAATCAGGCAGATAAAATGTGAAG 57.557 34.615 0.00 0.00 35.39 3.02
2737 2847 8.843262 CATCTAATCAGGCAGATAAAATGTGAA 58.157 33.333 0.00 0.00 35.39 3.18
2738 2848 7.040892 GCATCTAATCAGGCAGATAAAATGTGA 60.041 37.037 0.00 0.00 35.39 3.58
2739 2849 7.082602 GCATCTAATCAGGCAGATAAAATGTG 58.917 38.462 0.00 0.00 35.39 3.21
2740 2850 6.774170 TGCATCTAATCAGGCAGATAAAATGT 59.226 34.615 0.00 0.00 35.39 2.71
2741 2851 7.210718 TGCATCTAATCAGGCAGATAAAATG 57.789 36.000 0.00 0.00 35.39 2.32
2742 2852 7.286087 TGTTGCATCTAATCAGGCAGATAAAAT 59.714 33.333 0.00 0.00 37.59 1.82
2743 2853 6.602803 TGTTGCATCTAATCAGGCAGATAAAA 59.397 34.615 0.00 0.00 37.59 1.52
2744 2854 6.121590 TGTTGCATCTAATCAGGCAGATAAA 58.878 36.000 0.00 0.00 37.59 1.40
2745 2855 5.683681 TGTTGCATCTAATCAGGCAGATAA 58.316 37.500 0.00 0.00 37.59 1.75
2746 2856 5.294734 TGTTGCATCTAATCAGGCAGATA 57.705 39.130 0.00 0.00 37.59 1.98
2747 2857 4.160642 TGTTGCATCTAATCAGGCAGAT 57.839 40.909 0.00 0.00 37.59 2.90
2748 2858 3.632643 TGTTGCATCTAATCAGGCAGA 57.367 42.857 0.00 0.00 37.59 4.26
2749 2859 3.943381 TCTTGTTGCATCTAATCAGGCAG 59.057 43.478 0.00 0.00 37.59 4.85
2750 2860 3.943381 CTCTTGTTGCATCTAATCAGGCA 59.057 43.478 0.00 0.00 0.00 4.75
2751 2861 4.194640 TCTCTTGTTGCATCTAATCAGGC 58.805 43.478 0.00 0.00 0.00 4.85
2752 2862 6.111382 TCTTCTCTTGTTGCATCTAATCAGG 58.889 40.000 0.00 0.00 0.00 3.86
2753 2863 7.789273 ATCTTCTCTTGTTGCATCTAATCAG 57.211 36.000 0.00 0.00 0.00 2.90
2754 2864 8.481314 AGTATCTTCTCTTGTTGCATCTAATCA 58.519 33.333 0.00 0.00 0.00 2.57
2755 2865 8.885494 AGTATCTTCTCTTGTTGCATCTAATC 57.115 34.615 0.00 0.00 0.00 1.75
2756 2866 8.481314 TGAGTATCTTCTCTTGTTGCATCTAAT 58.519 33.333 0.00 0.00 35.68 1.73
2757 2867 7.840931 TGAGTATCTTCTCTTGTTGCATCTAA 58.159 34.615 0.00 0.00 35.68 2.10
2758 2868 7.410120 TGAGTATCTTCTCTTGTTGCATCTA 57.590 36.000 0.00 0.00 35.68 1.98
2759 2869 6.291648 TGAGTATCTTCTCTTGTTGCATCT 57.708 37.500 0.00 0.00 35.68 2.90
2760 2870 8.830201 ATATGAGTATCTTCTCTTGTTGCATC 57.170 34.615 0.00 0.00 35.68 3.91
2762 2872 9.534565 GTTATATGAGTATCTTCTCTTGTTGCA 57.465 33.333 0.00 0.00 35.68 4.08
2763 2873 8.695284 CGTTATATGAGTATCTTCTCTTGTTGC 58.305 37.037 0.00 0.00 35.68 4.17
2764 2874 9.737427 ACGTTATATGAGTATCTTCTCTTGTTG 57.263 33.333 0.00 0.00 35.68 3.33
2767 2877 9.531412 CGTACGTTATATGAGTATCTTCTCTTG 57.469 37.037 7.22 0.00 35.68 3.02
2768 2878 8.719648 CCGTACGTTATATGAGTATCTTCTCTT 58.280 37.037 15.21 0.00 35.68 2.85
2769 2879 8.093307 TCCGTACGTTATATGAGTATCTTCTCT 58.907 37.037 15.21 0.00 35.68 3.10
2770 2880 8.249327 TCCGTACGTTATATGAGTATCTTCTC 57.751 38.462 15.21 0.00 34.92 2.87
2771 2881 8.789825 ATCCGTACGTTATATGAGTATCTTCT 57.210 34.615 15.21 0.00 34.92 2.85
2772 2882 9.488124 GAATCCGTACGTTATATGAGTATCTTC 57.512 37.037 15.21 0.38 34.92 2.87
2773 2883 8.173775 CGAATCCGTACGTTATATGAGTATCTT 58.826 37.037 15.21 0.00 34.92 2.40
2774 2884 7.547019 TCGAATCCGTACGTTATATGAGTATCT 59.453 37.037 15.21 0.00 37.05 1.98
2775 2885 7.679144 TCGAATCCGTACGTTATATGAGTATC 58.321 38.462 15.21 3.10 37.05 2.24
2776 2886 7.601073 TCGAATCCGTACGTTATATGAGTAT 57.399 36.000 15.21 0.00 37.05 2.12
2777 2887 7.331687 TGATCGAATCCGTACGTTATATGAGTA 59.668 37.037 15.21 1.07 37.05 2.59
2778 2888 5.929697 TCGAATCCGTACGTTATATGAGT 57.070 39.130 15.21 1.87 37.05 3.41
2779 2889 6.540205 TGATCGAATCCGTACGTTATATGAG 58.460 40.000 15.21 0.00 37.05 2.90
2780 2890 6.484818 TGATCGAATCCGTACGTTATATGA 57.515 37.500 15.21 3.18 37.05 2.15
2781 2891 8.831000 TTATGATCGAATCCGTACGTTATATG 57.169 34.615 15.21 0.00 37.05 1.78
2782 2892 8.886719 TCTTATGATCGAATCCGTACGTTATAT 58.113 33.333 15.21 0.00 37.05 0.86
2783 2893 8.255394 TCTTATGATCGAATCCGTACGTTATA 57.745 34.615 15.21 0.00 37.05 0.98
2784 2894 7.137490 TCTTATGATCGAATCCGTACGTTAT 57.863 36.000 15.21 4.49 37.05 1.89
2785 2895 6.544038 TCTTATGATCGAATCCGTACGTTA 57.456 37.500 15.21 1.91 37.05 3.18
2786 2896 5.428496 TCTTATGATCGAATCCGTACGTT 57.572 39.130 15.21 2.23 37.05 3.99
2787 2897 5.624344 ATCTTATGATCGAATCCGTACGT 57.376 39.130 15.21 0.00 37.05 3.57
2788 2898 7.001695 TCTATCTTATGATCGAATCCGTACG 57.998 40.000 8.69 8.69 37.05 3.67
2789 2899 8.452534 AGTTCTATCTTATGATCGAATCCGTAC 58.547 37.037 8.28 0.00 36.96 3.67
2790 2900 8.563123 AGTTCTATCTTATGATCGAATCCGTA 57.437 34.615 8.28 0.00 36.96 4.02
2791 2901 7.362229 GGAGTTCTATCTTATGATCGAATCCGT 60.362 40.741 8.28 0.00 36.96 4.69
2792 2902 6.970043 GGAGTTCTATCTTATGATCGAATCCG 59.030 42.308 8.28 0.00 36.96 4.18
2793 2903 8.062065 AGGAGTTCTATCTTATGATCGAATCC 57.938 38.462 16.17 16.17 36.96 3.01
2794 2904 9.997482 GTAGGAGTTCTATCTTATGATCGAATC 57.003 37.037 8.28 7.35 36.96 2.52
2795 2905 9.521841 TGTAGGAGTTCTATCTTATGATCGAAT 57.478 33.333 8.28 0.00 36.96 3.34
2796 2906 8.784994 GTGTAGGAGTTCTATCTTATGATCGAA 58.215 37.037 0.00 2.51 33.70 3.71
2797 2907 7.937394 TGTGTAGGAGTTCTATCTTATGATCGA 59.063 37.037 0.00 0.00 34.32 3.59
2798 2908 8.100508 TGTGTAGGAGTTCTATCTTATGATCG 57.899 38.462 0.00 0.00 34.32 3.69
2799 2909 9.853555 CATGTGTAGGAGTTCTATCTTATGATC 57.146 37.037 0.00 0.00 34.32 2.92
2800 2910 8.310382 GCATGTGTAGGAGTTCTATCTTATGAT 58.690 37.037 0.00 0.00 36.74 2.45
2801 2911 7.255977 GGCATGTGTAGGAGTTCTATCTTATGA 60.256 40.741 0.00 0.00 0.00 2.15
2802 2912 6.870965 GGCATGTGTAGGAGTTCTATCTTATG 59.129 42.308 0.00 0.00 0.00 1.90
2803 2913 6.554982 TGGCATGTGTAGGAGTTCTATCTTAT 59.445 38.462 0.00 0.00 0.00 1.73
2804 2914 5.897250 TGGCATGTGTAGGAGTTCTATCTTA 59.103 40.000 0.00 0.00 0.00 2.10
2805 2915 4.716784 TGGCATGTGTAGGAGTTCTATCTT 59.283 41.667 0.00 0.00 0.00 2.40
2806 2916 4.290093 TGGCATGTGTAGGAGTTCTATCT 58.710 43.478 0.00 0.00 0.00 1.98
2807 2917 4.672587 TGGCATGTGTAGGAGTTCTATC 57.327 45.455 0.00 0.00 0.00 2.08
2808 2918 5.636903 ATTGGCATGTGTAGGAGTTCTAT 57.363 39.130 0.00 0.00 0.00 1.98
2809 2919 5.423931 TGTATTGGCATGTGTAGGAGTTCTA 59.576 40.000 0.00 0.00 0.00 2.10
2810 2920 4.225042 TGTATTGGCATGTGTAGGAGTTCT 59.775 41.667 0.00 0.00 0.00 3.01
2811 2921 4.513442 TGTATTGGCATGTGTAGGAGTTC 58.487 43.478 0.00 0.00 0.00 3.01
2812 2922 4.568072 TGTATTGGCATGTGTAGGAGTT 57.432 40.909 0.00 0.00 0.00 3.01
2813 2923 4.778213 ATGTATTGGCATGTGTAGGAGT 57.222 40.909 0.00 0.00 0.00 3.85
2814 2924 5.125356 TCAATGTATTGGCATGTGTAGGAG 58.875 41.667 4.89 0.00 38.30 3.69
2815 2925 5.109500 TCAATGTATTGGCATGTGTAGGA 57.891 39.130 4.89 0.00 38.30 2.94
2816 2926 5.357878 ACTTCAATGTATTGGCATGTGTAGG 59.642 40.000 4.89 0.00 38.30 3.18
2817 2927 6.441093 ACTTCAATGTATTGGCATGTGTAG 57.559 37.500 4.89 0.00 38.30 2.74
2820 2930 5.712004 TCAACTTCAATGTATTGGCATGTG 58.288 37.500 4.89 0.00 38.30 3.21
2833 2943 8.800332 AGAATCTGCTAATTGTTCAACTTCAAT 58.200 29.630 0.00 0.00 36.07 2.57
2847 2957 7.284034 CAGGGTTGAAATGTAGAATCTGCTAAT 59.716 37.037 0.00 0.00 0.00 1.73
2872 2982 0.599060 TGAGGTACACGACGATTGCA 59.401 50.000 0.00 0.00 0.00 4.08
2873 2983 1.705256 TTGAGGTACACGACGATTGC 58.295 50.000 0.00 0.00 0.00 3.56
2878 2988 4.417506 TGTATGATTTGAGGTACACGACG 58.582 43.478 0.00 0.00 0.00 5.12
2887 2997 7.161773 ACCAAAAGTGATGTATGATTTGAGG 57.838 36.000 0.00 0.00 31.23 3.86
2903 3013 7.648039 TGTCCAAACTATGTAAACCAAAAGT 57.352 32.000 0.00 0.00 0.00 2.66
2918 3028 5.357742 AAGCCTTTTTGAATGTCCAAACT 57.642 34.783 0.00 0.00 35.95 2.66
2919 3029 5.007626 GGAAAGCCTTTTTGAATGTCCAAAC 59.992 40.000 0.00 0.00 35.95 2.93
2920 3030 5.122519 GGAAAGCCTTTTTGAATGTCCAAA 58.877 37.500 0.00 0.00 34.56 3.28
2923 3033 3.070878 TGGGAAAGCCTTTTTGAATGTCC 59.929 43.478 0.00 0.00 0.00 4.02
2925 3035 3.454082 TGTGGGAAAGCCTTTTTGAATGT 59.546 39.130 0.00 0.00 0.00 2.71
2926 3036 4.070630 TGTGGGAAAGCCTTTTTGAATG 57.929 40.909 0.00 0.00 0.00 2.67
2927 3037 4.769345 TTGTGGGAAAGCCTTTTTGAAT 57.231 36.364 0.00 0.00 0.00 2.57
2928 3038 4.163078 TGATTGTGGGAAAGCCTTTTTGAA 59.837 37.500 0.00 0.00 0.00 2.69
2930 3040 4.070630 TGATTGTGGGAAAGCCTTTTTG 57.929 40.909 0.00 0.00 0.00 2.44
2946 3056 9.060347 GCACCCTACCATTCATATATATGATTG 57.940 37.037 26.64 26.64 41.86 2.67
3003 3113 6.132791 TCTAAACTACTGCTATTCGTCTGG 57.867 41.667 0.00 0.00 0.00 3.86
3013 3123 8.618677 GTTGTTTTAGGTTTCTAAACTACTGCT 58.381 33.333 5.62 0.00 42.99 4.24
3040 3153 7.788375 AAGTAGATAACTATGGCACACGATAGC 60.788 40.741 0.00 0.00 38.60 2.97
3055 3168 9.959721 TTATTTGAGCAGGAAAAGTAGATAACT 57.040 29.630 0.00 0.00 41.49 2.24
3068 3181 6.460781 TCGAAACTAGTTTATTTGAGCAGGA 58.539 36.000 20.58 3.71 32.11 3.86
3070 3183 7.352719 ACTCGAAACTAGTTTATTTGAGCAG 57.647 36.000 20.58 9.82 32.11 4.24
3090 3203 8.447833 TGAGCATTACAGGTTAAAATAAACTCG 58.552 33.333 0.00 0.00 0.00 4.18
3101 3214 7.828717 TGAAGATCATTTGAGCATTACAGGTTA 59.171 33.333 0.00 0.00 31.88 2.85
3107 3220 6.546395 ACGTTGAAGATCATTTGAGCATTAC 58.454 36.000 0.00 0.00 31.88 1.89
3129 3242 4.499183 AGTAAGGCTGATTTCTCTCAACG 58.501 43.478 0.00 0.00 0.00 4.10
3144 3257 7.232127 TGTGTACAGGGTATAAGATAGTAAGGC 59.768 40.741 0.00 0.00 0.00 4.35
3543 3657 6.820656 TGTAAACAAAATGGCAAACATGAAGT 59.179 30.769 0.00 0.00 40.44 3.01
3544 3658 7.244166 TGTAAACAAAATGGCAAACATGAAG 57.756 32.000 0.00 0.00 40.44 3.02
3602 3729 2.736192 GTGAAAGCACTCTCTTCTCTGC 59.264 50.000 0.00 0.00 41.84 4.26
3794 3924 8.552296 CCATATTTAGCTCATTACCCTTCCTAT 58.448 37.037 0.00 0.00 0.00 2.57
3815 3945 2.021457 GGTTTGCAACGGCTACCATAT 58.979 47.619 11.56 0.00 41.83 1.78
3858 3988 1.261480 AGTAGCATATCAGGAGGCCG 58.739 55.000 0.00 0.00 0.00 6.13
3963 4093 3.275617 TGCATGTTACTCCGGCTAAAT 57.724 42.857 0.00 0.00 0.00 1.40
4051 4181 7.247456 TGTAACCTGATATGTACCAGTTTGA 57.753 36.000 0.00 0.00 0.00 2.69
4092 4506 9.685276 ATCTTATGACATCATAAAACACCTTCA 57.315 29.630 13.82 0.00 45.11 3.02
4208 4624 6.702282 GCCAGTTGCTACCTTACTAATTAGAG 59.298 42.308 19.38 6.83 36.87 2.43
4300 4720 8.200120 TCATAGAAATCTAGGATTCACACACTG 58.800 37.037 0.93 0.00 34.73 3.66
4301 4721 8.311395 TCATAGAAATCTAGGATTCACACACT 57.689 34.615 0.93 0.00 34.73 3.55
4413 4839 5.242171 TGTTCAATAGTAACTGAGGACGTCA 59.758 40.000 18.91 0.00 0.00 4.35
4414 4840 5.706916 TGTTCAATAGTAACTGAGGACGTC 58.293 41.667 7.13 7.13 0.00 4.34
4415 4841 5.717078 TGTTCAATAGTAACTGAGGACGT 57.283 39.130 0.00 0.00 0.00 4.34
4473 4899 3.505464 ACTAGGTATCAGCAACACGAC 57.495 47.619 0.00 0.00 0.00 4.34
4896 5323 4.818005 CCATATCACAACTAGCAAGCATGA 59.182 41.667 0.00 0.00 0.00 3.07
4951 5378 2.360801 GGCAAGCAAAGTAACTCACCAA 59.639 45.455 0.00 0.00 0.00 3.67
4952 5379 1.953686 GGCAAGCAAAGTAACTCACCA 59.046 47.619 0.00 0.00 0.00 4.17
4953 5380 1.953686 TGGCAAGCAAAGTAACTCACC 59.046 47.619 0.00 0.00 0.00 4.02
4955 5382 4.651778 AGTATGGCAAGCAAAGTAACTCA 58.348 39.130 0.00 0.00 0.00 3.41
4957 5384 7.066284 CAGATAAGTATGGCAAGCAAAGTAACT 59.934 37.037 0.00 0.00 0.00 2.24
4958 5385 7.189512 CAGATAAGTATGGCAAGCAAAGTAAC 58.810 38.462 0.00 0.00 0.00 2.50
4959 5386 6.318648 CCAGATAAGTATGGCAAGCAAAGTAA 59.681 38.462 0.00 0.00 28.45 2.24
4971 5399 9.482627 GTTTAACAGAGATCCAGATAAGTATGG 57.517 37.037 0.00 0.00 38.09 2.74
4973 5401 7.868415 GCGTTTAACAGAGATCCAGATAAGTAT 59.132 37.037 0.00 0.00 0.00 2.12
5007 5435 7.426606 GGGGGCTAATATTAACTTTTCCAAA 57.573 36.000 0.00 0.00 0.00 3.28
5041 5469 6.446781 TGATGAAATGAATCTCTTTCCAGC 57.553 37.500 6.47 0.00 33.04 4.85
5044 5472 9.962783 CCTATTTGATGAAATGAATCTCTTTCC 57.037 33.333 0.00 0.00 33.63 3.13
5045 5473 9.962783 CCCTATTTGATGAAATGAATCTCTTTC 57.037 33.333 0.00 3.15 33.63 2.62
5046 5474 9.484806 ACCCTATTTGATGAAATGAATCTCTTT 57.515 29.630 0.00 0.00 33.63 2.52
5047 5475 9.484806 AACCCTATTTGATGAAATGAATCTCTT 57.515 29.630 0.00 0.00 33.63 2.85
5165 5597 8.537728 AGATTCATTGTTATCAAAATAGGGCA 57.462 30.769 0.00 0.00 37.11 5.36
5184 5616 6.100859 AGGGAGATCAAGCTTATGAAGATTCA 59.899 38.462 0.00 0.00 42.14 2.57
5185 5617 6.532826 AGGGAGATCAAGCTTATGAAGATTC 58.467 40.000 0.00 0.00 34.36 2.52
5221 5653 5.275067 AGTTCAAAAAGCAAAGTGCCATA 57.725 34.783 0.00 0.00 46.52 2.74
5227 5659 7.391148 TCAAGTCTAGTTCAAAAAGCAAAGT 57.609 32.000 0.00 0.00 0.00 2.66
5259 5691 3.862642 GTCAAGGGACTGTCAGACATGAC 60.863 52.174 14.14 14.14 44.39 3.06
5260 5692 2.300152 GTCAAGGGACTGTCAGACATGA 59.700 50.000 6.91 0.70 40.86 3.07
5261 5693 2.693069 GTCAAGGGACTGTCAGACATG 58.307 52.381 6.91 0.00 40.86 3.21
5273 5705 3.650942 ACACTCAACCAATAGTCAAGGGA 59.349 43.478 0.00 0.00 0.00 4.20
5288 5720 6.208599 GGACCAAATTCCAAATCTACACTCAA 59.791 38.462 0.00 0.00 35.49 3.02
5305 5737 6.413783 ACGGTTTAAGAATTTGGACCAAAT 57.586 33.333 24.12 24.12 44.62 2.32
5306 5738 5.855740 ACGGTTTAAGAATTTGGACCAAA 57.144 34.783 21.68 21.68 37.75 3.28
5307 5739 5.505985 CGAACGGTTTAAGAATTTGGACCAA 60.506 40.000 1.69 1.69 0.00 3.67
5308 5740 4.023878 CGAACGGTTTAAGAATTTGGACCA 60.024 41.667 0.00 0.00 0.00 4.02
5309 5741 4.023792 ACGAACGGTTTAAGAATTTGGACC 60.024 41.667 0.00 0.00 0.00 4.46
5310 5742 5.099484 ACGAACGGTTTAAGAATTTGGAC 57.901 39.130 0.00 0.00 0.00 4.02
5331 5763 2.108178 TACGCGTTGCAAGGAAAAAC 57.892 45.000 20.78 3.67 0.00 2.43
5341 5779 0.179176 TGCATGGAATTACGCGTTGC 60.179 50.000 20.78 20.17 0.00 4.17
5359 5797 2.091278 TCACTCCTAGGGACCATAGGTG 60.091 54.545 27.35 26.38 40.67 4.00
5362 5800 4.040952 CCAAATCACTCCTAGGGACCATAG 59.959 50.000 9.46 6.18 25.25 2.23
5364 5802 2.780010 CCAAATCACTCCTAGGGACCAT 59.220 50.000 9.46 0.00 25.25 3.55
5384 5822 2.120909 CACCGCAATGGGACCATCC 61.121 63.158 3.98 0.00 44.64 3.51
5391 5829 2.360350 AGTCAGCACCGCAATGGG 60.360 61.111 0.00 0.00 44.64 4.00
5395 5833 1.655484 CATATCAGTCAGCACCGCAA 58.345 50.000 0.00 0.00 0.00 4.85
5412 5850 2.355716 GCCACATACACCTACACACCAT 60.356 50.000 0.00 0.00 0.00 3.55
5416 5854 4.509616 GTTATGCCACATACACCTACACA 58.490 43.478 0.00 0.00 0.00 3.72
5417 5855 3.875134 GGTTATGCCACATACACCTACAC 59.125 47.826 9.67 0.00 37.17 2.90
5419 5857 4.127171 CTGGTTATGCCACATACACCTAC 58.873 47.826 14.42 1.49 43.61 3.18
5422 5860 2.999331 ACTGGTTATGCCACATACACC 58.001 47.619 9.87 9.87 43.61 4.16
5430 5869 1.340600 GGTAGCCAACTGGTTATGCCA 60.341 52.381 0.00 0.00 46.95 4.92
5432 5871 1.014352 CGGTAGCCAACTGGTTATGC 58.986 55.000 0.00 0.00 33.44 3.14
5444 5883 1.301423 TTGACAAACACACGGTAGCC 58.699 50.000 0.00 0.00 0.00 3.93
5445 5884 2.353579 ACTTTGACAAACACACGGTAGC 59.646 45.455 0.00 0.00 0.00 3.58
5457 5896 5.011125 TGTTCCCTGTTTCAAACTTTGACAA 59.989 36.000 3.56 0.54 39.87 3.18
5460 5899 5.730296 TTGTTCCCTGTTTCAAACTTTGA 57.270 34.783 1.10 0.00 38.04 2.69
5528 6034 9.686683 ATATTTATATGTAACAGAGAATGGGCC 57.313 33.333 0.00 0.00 0.00 5.80
5554 6060 9.845740 ACTATTTGCATGGACAATGTAGTTATA 57.154 29.630 0.00 0.00 38.65 0.98
5555 6061 8.752005 ACTATTTGCATGGACAATGTAGTTAT 57.248 30.769 0.00 0.00 38.65 1.89
5562 6068 6.869913 ACTCAAAACTATTTGCATGGACAATG 59.130 34.615 0.00 0.00 44.52 2.82
5564 6070 6.215121 CACTCAAAACTATTTGCATGGACAA 58.785 36.000 0.00 0.00 44.52 3.18
5568 6074 3.609373 CGCACTCAAAACTATTTGCATGG 59.391 43.478 0.00 0.00 44.52 3.66
5575 6081 6.428159 ACAGAGAATTCGCACTCAAAACTATT 59.572 34.615 11.94 0.00 35.83 1.73
5578 6084 4.130118 ACAGAGAATTCGCACTCAAAACT 58.870 39.130 11.94 0.00 35.83 2.66
5579 6085 4.024893 TGACAGAGAATTCGCACTCAAAAC 60.025 41.667 11.94 0.00 35.83 2.43
5580 6086 4.024893 GTGACAGAGAATTCGCACTCAAAA 60.025 41.667 11.94 0.00 35.83 2.44
5581 6087 3.494626 GTGACAGAGAATTCGCACTCAAA 59.505 43.478 11.94 0.00 35.83 2.69
5582 6088 3.059884 GTGACAGAGAATTCGCACTCAA 58.940 45.455 11.94 0.00 35.83 3.02
5583 6089 2.035832 TGTGACAGAGAATTCGCACTCA 59.964 45.455 11.94 8.10 35.83 3.41
5584 6090 2.677199 TGTGACAGAGAATTCGCACTC 58.323 47.619 11.94 5.70 0.00 3.51
5585 6091 2.820059 TGTGACAGAGAATTCGCACT 57.180 45.000 11.94 4.71 0.00 4.40
5586 6092 6.828502 TTATATGTGACAGAGAATTCGCAC 57.171 37.500 11.94 10.62 35.16 5.34
5587 6093 9.541143 TTAATTATATGTGACAGAGAATTCGCA 57.459 29.630 14.97 0.00 36.71 5.10
5612 6118 7.970061 GCATCACACTATACACATGAACAATTT 59.030 33.333 0.00 0.00 0.00 1.82
5613 6119 7.337689 AGCATCACACTATACACATGAACAATT 59.662 33.333 0.00 0.00 0.00 2.32
5614 6120 6.825213 AGCATCACACTATACACATGAACAAT 59.175 34.615 0.00 0.00 0.00 2.71
5615 6121 6.172630 AGCATCACACTATACACATGAACAA 58.827 36.000 0.00 0.00 0.00 2.83
5616 6122 5.733676 AGCATCACACTATACACATGAACA 58.266 37.500 0.00 0.00 0.00 3.18
5617 6123 6.481134 CAAGCATCACACTATACACATGAAC 58.519 40.000 0.00 0.00 0.00 3.18
5618 6124 5.065090 GCAAGCATCACACTATACACATGAA 59.935 40.000 0.00 0.00 0.00 2.57
5619 6125 4.571984 GCAAGCATCACACTATACACATGA 59.428 41.667 0.00 0.00 0.00 3.07
5620 6126 4.333372 TGCAAGCATCACACTATACACATG 59.667 41.667 0.00 0.00 0.00 3.21
5621 6127 4.516323 TGCAAGCATCACACTATACACAT 58.484 39.130 0.00 0.00 0.00 3.21
5622 6128 3.936564 TGCAAGCATCACACTATACACA 58.063 40.909 0.00 0.00 0.00 3.72
5623 6129 4.944962 TTGCAAGCATCACACTATACAC 57.055 40.909 0.00 0.00 0.00 2.90
5624 6130 5.956068 TTTTGCAAGCATCACACTATACA 57.044 34.783 0.00 0.00 0.00 2.29
5625 6131 7.816945 AAATTTTGCAAGCATCACACTATAC 57.183 32.000 0.00 0.00 0.00 1.47
5626 6132 7.871973 ACAAAATTTTGCAAGCATCACACTATA 59.128 29.630 26.94 0.00 41.79 1.31
5627 6133 6.707161 ACAAAATTTTGCAAGCATCACACTAT 59.293 30.769 26.94 2.76 41.79 2.12
5628 6134 6.047870 ACAAAATTTTGCAAGCATCACACTA 58.952 32.000 26.94 0.00 41.79 2.74
5629 6135 4.877251 ACAAAATTTTGCAAGCATCACACT 59.123 33.333 26.94 3.77 41.79 3.55
5630 6136 5.159399 ACAAAATTTTGCAAGCATCACAC 57.841 34.783 26.94 0.00 41.79 3.82
5631 6137 6.073167 CCATACAAAATTTTGCAAGCATCACA 60.073 34.615 26.94 4.06 41.79 3.58
5632 6138 6.073112 ACCATACAAAATTTTGCAAGCATCAC 60.073 34.615 26.94 0.00 41.79 3.06
5648 6154 6.300703 ACAAGGCTGTTACTAACCATACAAA 58.699 36.000 0.00 0.00 28.57 2.83
5654 6160 4.262721 CCACTACAAGGCTGTTACTAACCA 60.263 45.833 0.00 0.00 36.96 3.67
5656 6162 4.891260 ACCACTACAAGGCTGTTACTAAC 58.109 43.478 0.00 0.00 36.96 2.34
5658 6164 4.413760 AGACCACTACAAGGCTGTTACTA 58.586 43.478 0.00 0.00 36.96 1.82
5661 6167 4.413760 ACTAGACCACTACAAGGCTGTTA 58.586 43.478 0.00 0.00 36.96 2.41
5704 6211 6.818644 GCAAAGGTTCTGAAGATACATGAGTA 59.181 38.462 0.00 0.00 34.10 2.59
5712 6219 4.256920 GAGCTGCAAAGGTTCTGAAGATA 58.743 43.478 1.02 0.00 0.00 1.98
5713 6220 3.080319 GAGCTGCAAAGGTTCTGAAGAT 58.920 45.455 1.02 0.00 0.00 2.40
5745 6252 5.335827 CAGTCTAACTTCAGTTTGTCTGC 57.664 43.478 12.53 0.00 43.32 4.26
5755 6262 3.745975 CGGACATTTGCAGTCTAACTTCA 59.254 43.478 4.76 0.00 36.29 3.02
5762 6269 2.034879 CGGCGGACATTTGCAGTCT 61.035 57.895 0.00 0.00 36.29 3.24
5805 6312 4.616953 GCGCTAAGCTCTCTTCTTCTAAT 58.383 43.478 0.00 0.00 44.04 1.73
5823 6330 0.108186 TTGATTCATCAGACCGCGCT 60.108 50.000 5.56 0.00 38.19 5.92
5840 6347 2.212652 GGGCTTTGCTCCAAAACTTTG 58.787 47.619 0.00 0.00 32.75 2.77
5843 6350 0.752658 GTGGGCTTTGCTCCAAAACT 59.247 50.000 0.00 0.00 32.75 2.66
5844 6351 0.752658 AGTGGGCTTTGCTCCAAAAC 59.247 50.000 0.00 0.00 32.75 2.43
5845 6352 1.039856 GAGTGGGCTTTGCTCCAAAA 58.960 50.000 0.00 0.00 32.75 2.44
5846 6353 0.185901 AGAGTGGGCTTTGCTCCAAA 59.814 50.000 0.00 0.00 32.52 3.28
5855 6390 1.352083 TCAGCTACAAGAGTGGGCTT 58.648 50.000 0.00 0.00 36.50 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.