Multiple sequence alignment - TraesCS6B01G363400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G363400 chr6B 100.000 3088 0 0 1 3088 634504969 634501882 0.000000e+00 5703.0
1 TraesCS6B01G363400 chr6B 87.638 1270 128 13 1050 2316 636746185 636747428 0.000000e+00 1448.0
2 TraesCS6B01G363400 chr6B 90.826 436 39 1 2653 3088 636767002 636767436 1.600000e-162 582.0
3 TraesCS6B01G363400 chr6B 80.172 232 31 8 2299 2525 636747356 636747577 3.190000e-35 159.0
4 TraesCS6B01G363400 chr6B 87.591 137 9 5 674 803 636744382 636744517 5.330000e-33 152.0
5 TraesCS6B01G363400 chr6A 90.623 1653 121 13 676 2316 564279177 564277547 0.000000e+00 2163.0
6 TraesCS6B01G363400 chr6A 85.616 1606 155 43 725 2316 565340123 565341666 0.000000e+00 1616.0
7 TraesCS6B01G363400 chr6A 89.565 345 29 6 2567 2909 565342344 565342683 6.120000e-117 431.0
8 TraesCS6B01G363400 chr6A 80.822 511 55 20 2290 2774 564277629 564277136 8.140000e-96 361.0
9 TraesCS6B01G363400 chr6A 93.617 47 3 0 2526 2572 564277353 564277307 1.540000e-08 71.3
10 TraesCS6B01G363400 chr6D 90.097 1656 104 24 674 2316 421468283 421466675 0.000000e+00 2095.0
11 TraesCS6B01G363400 chr6D 89.655 1653 116 25 666 2313 421661516 421663118 0.000000e+00 2054.0
12 TraesCS6B01G363400 chr6D 88.667 1650 122 27 666 2313 421679505 421681091 0.000000e+00 1951.0
13 TraesCS6B01G363400 chr6D 91.955 1330 87 11 986 2304 420970352 420969032 0.000000e+00 1845.0
14 TraesCS6B01G363400 chr6D 86.839 1664 142 32 669 2316 422215076 422216678 0.000000e+00 1788.0
15 TraesCS6B01G363400 chr6D 89.915 1418 91 22 666 2078 421688844 421690214 0.000000e+00 1779.0
16 TraesCS6B01G363400 chr6D 84.967 1683 164 44 675 2316 422600967 422602601 0.000000e+00 1624.0
17 TraesCS6B01G363400 chr6D 89.515 515 42 8 2580 3088 422217381 422217889 2.600000e-180 641.0
18 TraesCS6B01G363400 chr6D 87.214 524 54 8 2567 3088 422603285 422603797 4.440000e-163 584.0
19 TraesCS6B01G363400 chr6D 94.318 352 19 1 2738 3088 421696426 421696777 3.500000e-149 538.0
20 TraesCS6B01G363400 chr6D 95.015 341 17 0 2748 3088 421463939 421463599 1.260000e-148 536.0
21 TraesCS6B01G363400 chr6D 93.169 366 24 1 2724 3088 421681948 421682313 1.260000e-148 536.0
22 TraesCS6B01G363400 chr6D 92.916 367 25 1 2723 3088 421663973 421664339 1.630000e-147 532.0
23 TraesCS6B01G363400 chr6D 87.295 244 31 0 2070 2313 421695315 421695558 2.340000e-71 279.0
24 TraesCS6B01G363400 chr6D 87.137 241 18 7 2290 2525 421663040 421663272 8.490000e-66 261.0
25 TraesCS6B01G363400 chr6D 87.083 240 20 6 2290 2525 421681013 421681245 8.490000e-66 261.0
26 TraesCS6B01G363400 chr6D 86.026 229 18 10 2299 2523 421695489 421695707 1.850000e-57 233.0
27 TraesCS6B01G363400 chr6D 85.062 241 21 9 2290 2525 421466756 421466526 6.660000e-57 231.0
28 TraesCS6B01G363400 chr6D 84.232 241 20 9 2290 2525 420969102 420968875 5.180000e-53 219.0
29 TraesCS6B01G363400 chr6D 82.591 247 37 6 224 466 895022 894778 2.410000e-51 213.0
30 TraesCS6B01G363400 chr6D 82.684 231 25 5 2299 2525 422216606 422216825 1.130000e-44 191.0
31 TraesCS6B01G363400 chr6D 86.286 175 4 7 747 921 420970527 420970373 4.090000e-39 172.0
32 TraesCS6B01G363400 chr6D 80.579 242 28 11 2290 2525 422602519 422602747 5.300000e-38 169.0
33 TraesCS6B01G363400 chr6D 92.000 50 4 0 674 723 420970575 420970526 1.540000e-08 71.3
34 TraesCS6B01G363400 chr4A 85.360 403 49 5 2663 3065 11816575 11816967 2.870000e-110 409.0
35 TraesCS6B01G363400 chr7D 82.609 253 38 6 218 466 572419755 572419505 5.180000e-53 219.0
36 TraesCS6B01G363400 chr7D 84.184 196 19 7 309 492 572419811 572419616 2.450000e-41 180.0
37 TraesCS6B01G363400 chr4D 84.615 195 19 6 309 492 5587889 5588083 1.890000e-42 183.0
38 TraesCS6B01G363400 chr1D 84.103 195 20 6 309 492 428880782 428880588 8.800000e-41 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G363400 chr6B 634501882 634504969 3087 True 5703.000000 5703 100.000000 1 3088 1 chr6B.!!$R1 3087
1 TraesCS6B01G363400 chr6B 636744382 636747577 3195 False 586.333333 1448 85.133667 674 2525 3 chr6B.!!$F2 1851
2 TraesCS6B01G363400 chr6A 565340123 565342683 2560 False 1023.500000 1616 87.590500 725 2909 2 chr6A.!!$F1 2184
3 TraesCS6B01G363400 chr6A 564277136 564279177 2041 True 865.100000 2163 88.354000 676 2774 3 chr6A.!!$R1 2098
4 TraesCS6B01G363400 chr6D 421688844 421690214 1370 False 1779.000000 1779 89.915000 666 2078 1 chr6D.!!$F1 1412
5 TraesCS6B01G363400 chr6D 421463599 421468283 4684 True 954.000000 2095 90.058000 674 3088 3 chr6D.!!$R3 2414
6 TraesCS6B01G363400 chr6D 421661516 421664339 2823 False 949.000000 2054 89.902667 666 3088 3 chr6D.!!$F2 2422
7 TraesCS6B01G363400 chr6D 421679505 421682313 2808 False 916.000000 1951 89.639667 666 3088 3 chr6D.!!$F3 2422
8 TraesCS6B01G363400 chr6D 422215076 422217889 2813 False 873.333333 1788 86.346000 669 3088 3 chr6D.!!$F5 2419
9 TraesCS6B01G363400 chr6D 422600967 422603797 2830 False 792.333333 1624 84.253333 675 3088 3 chr6D.!!$F6 2413
10 TraesCS6B01G363400 chr6D 420968875 420970575 1700 True 576.825000 1845 88.618250 674 2525 4 chr6D.!!$R2 1851
11 TraesCS6B01G363400 chr6D 421695315 421696777 1462 False 350.000000 538 89.213000 2070 3088 3 chr6D.!!$F4 1018

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.033405 AATGAAGCATGGCTGGAGCT 60.033 50.0 0.0 0.0 39.62 4.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2297 3861 0.107703 GGAATCATGTCGACCCTGCA 60.108 55.0 14.12 0.0 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.227134 CCTCGGCGGATGGTGGAG 62.227 72.222 7.21 0.00 33.16 3.86
28 29 4.899239 CTCGGCGGATGGTGGAGC 62.899 72.222 7.21 0.00 0.00 4.70
32 33 4.783621 GCGGATGGTGGAGCTGCA 62.784 66.667 2.72 2.72 42.36 4.41
33 34 2.046023 CGGATGGTGGAGCTGCAA 60.046 61.111 10.44 0.00 0.00 4.08
34 35 2.110967 CGGATGGTGGAGCTGCAAG 61.111 63.158 10.44 0.00 0.00 4.01
45 46 2.559840 CTGCAAGCGGCTGAGTTG 59.440 61.111 1.81 0.00 43.53 3.16
46 47 2.203195 TGCAAGCGGCTGAGTTGT 60.203 55.556 1.81 0.00 45.15 3.32
47 48 0.950555 CTGCAAGCGGCTGAGTTGTA 60.951 55.000 1.81 0.00 43.53 2.41
48 49 0.950555 TGCAAGCGGCTGAGTTGTAG 60.951 55.000 1.81 0.00 45.15 2.74
49 50 1.790387 CAAGCGGCTGAGTTGTAGC 59.210 57.895 1.81 0.00 40.41 3.58
50 51 0.950555 CAAGCGGCTGAGTTGTAGCA 60.951 55.000 1.81 0.00 42.88 3.49
51 52 0.951040 AAGCGGCTGAGTTGTAGCAC 60.951 55.000 1.81 0.00 42.88 4.40
52 53 1.667830 GCGGCTGAGTTGTAGCACA 60.668 57.895 0.00 0.00 42.88 4.57
53 54 1.227999 GCGGCTGAGTTGTAGCACAA 61.228 55.000 0.00 0.00 42.88 3.33
61 62 2.595707 TTGTAGCACAACGGACGTG 58.404 52.632 0.00 0.00 32.34 4.49
62 63 0.876777 TTGTAGCACAACGGACGTGG 60.877 55.000 0.00 0.00 32.34 4.94
63 64 1.300388 GTAGCACAACGGACGTGGT 60.300 57.895 0.00 0.00 46.21 4.16
66 67 3.802507 CACAACGGACGTGGTGTT 58.197 55.556 20.98 0.00 43.19 3.32
67 68 1.350319 CACAACGGACGTGGTGTTG 59.650 57.895 20.98 17.67 43.19 3.33
68 69 3.802507 CAACGGACGTGGTGTTGT 58.197 55.556 13.25 0.00 38.47 3.32
69 70 1.350319 CAACGGACGTGGTGTTGTG 59.650 57.895 13.25 0.00 38.47 3.33
70 71 2.466140 AACGGACGTGGTGTTGTGC 61.466 57.895 0.00 0.00 0.00 4.57
71 72 3.995669 CGGACGTGGTGTTGTGCG 61.996 66.667 0.00 0.00 43.16 5.34
72 73 4.307908 GGACGTGGTGTTGTGCGC 62.308 66.667 0.00 0.00 0.00 6.09
96 97 4.913126 CGGAGCTGTAGTGGAACC 57.087 61.111 0.00 0.00 37.80 3.62
97 98 1.972198 CGGAGCTGTAGTGGAACCA 59.028 57.895 0.00 0.00 37.80 3.67
98 99 0.537188 CGGAGCTGTAGTGGAACCAT 59.463 55.000 0.00 0.00 37.80 3.55
99 100 1.740380 CGGAGCTGTAGTGGAACCATG 60.740 57.143 0.00 0.00 37.80 3.66
100 101 1.407437 GGAGCTGTAGTGGAACCATGG 60.407 57.143 11.19 11.19 37.80 3.66
101 102 0.035056 AGCTGTAGTGGAACCATGGC 60.035 55.000 13.04 0.00 37.80 4.40
102 103 1.369091 GCTGTAGTGGAACCATGGCG 61.369 60.000 13.04 0.00 37.80 5.69
103 104 0.744414 CTGTAGTGGAACCATGGCGG 60.744 60.000 13.04 0.00 37.80 6.13
126 127 4.994471 CGGTGGAGCTGCAGTGCA 62.994 66.667 18.58 18.58 36.92 4.57
171 172 4.303853 CGGAGCTACGGTGAATCG 57.696 61.111 11.59 0.00 0.00 3.34
172 173 1.299165 CGGAGCTACGGTGAATCGG 60.299 63.158 11.59 0.00 0.00 4.18
173 174 1.591863 GGAGCTACGGTGAATCGGC 60.592 63.158 0.00 0.00 0.00 5.54
174 175 1.944676 GAGCTACGGTGAATCGGCG 60.945 63.158 0.00 0.00 0.00 6.46
175 176 3.627218 GCTACGGTGAATCGGCGC 61.627 66.667 0.00 0.00 0.00 6.53
176 177 2.104331 CTACGGTGAATCGGCGCT 59.896 61.111 7.64 0.00 0.00 5.92
177 178 2.202690 TACGGTGAATCGGCGCTG 60.203 61.111 10.86 10.86 0.00 5.18
178 179 2.884087 CTACGGTGAATCGGCGCTGT 62.884 60.000 17.37 1.00 40.66 4.40
179 180 3.853330 CGGTGAATCGGCGCTGTG 61.853 66.667 17.37 1.93 0.00 3.66
180 181 4.166011 GGTGAATCGGCGCTGTGC 62.166 66.667 17.37 4.24 45.38 4.57
181 182 3.121030 GTGAATCGGCGCTGTGCT 61.121 61.111 17.37 1.26 45.43 4.40
195 196 2.203056 TGCTGCACACAAGAGCGT 60.203 55.556 0.00 0.00 35.36 5.07
196 197 2.246739 TGCTGCACACAAGAGCGTC 61.247 57.895 0.00 0.00 35.36 5.19
197 198 2.849007 CTGCACACAAGAGCGTCG 59.151 61.111 0.00 0.00 33.73 5.12
198 199 2.661537 TGCACACAAGAGCGTCGG 60.662 61.111 0.00 0.00 33.73 4.79
199 200 2.355837 GCACACAAGAGCGTCGGA 60.356 61.111 0.00 0.00 0.00 4.55
200 201 2.375766 GCACACAAGAGCGTCGGAG 61.376 63.158 0.00 0.00 0.00 4.63
201 202 2.049063 ACACAAGAGCGTCGGAGC 60.049 61.111 0.00 0.00 37.41 4.70
209 210 2.881352 GCGTCGGAGCTACAGTGC 60.881 66.667 0.00 0.00 0.00 4.40
210 211 2.566529 CGTCGGAGCTACAGTGCA 59.433 61.111 0.00 0.00 34.99 4.57
211 212 1.080772 CGTCGGAGCTACAGTGCAA 60.081 57.895 0.00 0.00 34.99 4.08
212 213 1.344942 CGTCGGAGCTACAGTGCAAC 61.345 60.000 0.00 0.00 34.99 4.17
213 214 0.319555 GTCGGAGCTACAGTGCAACA 60.320 55.000 0.00 0.00 41.43 3.33
214 215 0.608130 TCGGAGCTACAGTGCAACAT 59.392 50.000 0.00 0.00 41.43 2.71
215 216 0.723414 CGGAGCTACAGTGCAACATG 59.277 55.000 0.00 0.00 41.43 3.21
216 217 1.813513 GGAGCTACAGTGCAACATGT 58.186 50.000 0.00 0.00 41.43 3.21
217 218 1.734465 GGAGCTACAGTGCAACATGTC 59.266 52.381 0.00 0.00 41.43 3.06
218 219 1.391485 GAGCTACAGTGCAACATGTCG 59.609 52.381 0.00 0.00 41.43 4.35
219 220 0.443869 GCTACAGTGCAACATGTCGG 59.556 55.000 0.00 0.00 41.43 4.79
220 221 1.939381 GCTACAGTGCAACATGTCGGA 60.939 52.381 0.00 0.00 41.43 4.55
221 222 1.995484 CTACAGTGCAACATGTCGGAG 59.005 52.381 0.00 0.00 41.43 4.63
222 223 1.230635 ACAGTGCAACATGTCGGAGC 61.231 55.000 0.00 2.06 41.43 4.70
223 224 0.952497 CAGTGCAACATGTCGGAGCT 60.952 55.000 0.00 0.00 41.43 4.09
224 225 0.952497 AGTGCAACATGTCGGAGCTG 60.952 55.000 0.00 0.00 41.43 4.24
225 226 2.327343 TGCAACATGTCGGAGCTGC 61.327 57.895 10.35 10.35 0.00 5.25
226 227 2.780643 CAACATGTCGGAGCTGCG 59.219 61.111 22.84 22.84 0.00 5.18
227 228 1.737735 CAACATGTCGGAGCTGCGA 60.738 57.895 27.32 27.32 0.00 5.10
228 229 1.738099 AACATGTCGGAGCTGCGAC 60.738 57.895 42.42 42.42 35.87 5.19
229 230 3.250323 CATGTCGGAGCTGCGACG 61.250 66.667 41.93 30.50 37.89 5.12
230 231 4.498520 ATGTCGGAGCTGCGACGG 62.499 66.667 41.93 13.33 37.89 4.79
250 251 3.498834 CGCTGGCGCTGCATTGTA 61.499 61.111 21.37 0.00 0.00 2.41
251 252 2.406401 GCTGGCGCTGCATTGTAG 59.594 61.111 18.05 0.00 0.00 2.74
252 253 2.406401 CTGGCGCTGCATTGTAGC 59.594 61.111 15.83 15.83 37.80 3.58
253 254 2.359726 TGGCGCTGCATTGTAGCA 60.360 55.556 23.63 4.55 41.18 3.49
254 255 2.100991 GGCGCTGCATTGTAGCAC 59.899 61.111 23.63 15.47 41.18 4.40
255 256 2.100991 GCGCTGCATTGTAGCACC 59.899 61.111 23.63 11.88 41.18 5.01
256 257 2.689785 GCGCTGCATTGTAGCACCA 61.690 57.895 23.63 0.00 41.18 4.17
257 258 1.135315 CGCTGCATTGTAGCACCAC 59.865 57.895 23.63 0.00 41.18 4.16
258 259 1.135315 GCTGCATTGTAGCACCACG 59.865 57.895 20.11 0.00 40.11 4.94
259 260 1.577328 GCTGCATTGTAGCACCACGT 61.577 55.000 20.11 0.00 40.11 4.49
260 261 0.166597 CTGCATTGTAGCACCACGTG 59.833 55.000 9.08 9.08 40.11 4.49
269 270 2.356913 CACCACGTGCCGATGTCA 60.357 61.111 10.91 0.00 0.00 3.58
270 271 2.357034 ACCACGTGCCGATGTCAC 60.357 61.111 10.91 0.00 0.00 3.67
279 280 2.741985 CGATGTCACGGGCTGCAA 60.742 61.111 0.50 0.00 0.00 4.08
280 281 2.108514 CGATGTCACGGGCTGCAAT 61.109 57.895 0.50 0.00 0.00 3.56
281 282 1.647545 CGATGTCACGGGCTGCAATT 61.648 55.000 0.50 0.00 0.00 2.32
282 283 0.179156 GATGTCACGGGCTGCAATTG 60.179 55.000 0.00 0.00 0.00 2.32
283 284 0.608856 ATGTCACGGGCTGCAATTGA 60.609 50.000 10.34 0.00 0.00 2.57
284 285 1.236616 TGTCACGGGCTGCAATTGAG 61.237 55.000 10.34 5.14 0.00 3.02
285 286 2.180017 CACGGGCTGCAATTGAGC 59.820 61.111 10.34 14.46 35.57 4.26
286 287 2.282391 ACGGGCTGCAATTGAGCA 60.282 55.556 22.72 10.27 43.35 4.26
287 288 1.679977 ACGGGCTGCAATTGAGCAT 60.680 52.632 22.72 11.00 44.68 3.79
288 289 1.226859 CGGGCTGCAATTGAGCATG 60.227 57.895 22.72 14.47 44.68 4.06
289 290 1.143183 GGGCTGCAATTGAGCATGG 59.857 57.895 22.72 3.43 44.68 3.66
290 291 1.610554 GGGCTGCAATTGAGCATGGT 61.611 55.000 22.72 0.00 44.68 3.55
291 292 0.179119 GGCTGCAATTGAGCATGGTC 60.179 55.000 18.01 18.01 44.68 4.02
292 293 0.524816 GCTGCAATTGAGCATGGTCG 60.525 55.000 19.36 6.77 44.68 4.79
293 294 0.099968 CTGCAATTGAGCATGGTCGG 59.900 55.000 19.36 10.19 44.68 4.79
294 295 0.322366 TGCAATTGAGCATGGTCGGA 60.322 50.000 19.36 11.30 40.11 4.55
295 296 0.379669 GCAATTGAGCATGGTCGGAG 59.620 55.000 19.36 10.50 0.00 4.63
296 297 1.019673 CAATTGAGCATGGTCGGAGG 58.980 55.000 19.36 6.28 0.00 4.30
297 298 0.620556 AATTGAGCATGGTCGGAGGT 59.379 50.000 19.36 0.97 0.00 3.85
298 299 0.107508 ATTGAGCATGGTCGGAGGTG 60.108 55.000 19.36 0.00 0.00 4.00
299 300 1.480212 TTGAGCATGGTCGGAGGTGT 61.480 55.000 19.36 0.00 0.00 4.16
300 301 1.448540 GAGCATGGTCGGAGGTGTG 60.449 63.158 9.50 0.00 0.00 3.82
301 302 1.888436 GAGCATGGTCGGAGGTGTGA 61.888 60.000 9.50 0.00 0.00 3.58
302 303 1.741770 GCATGGTCGGAGGTGTGAC 60.742 63.158 0.00 0.00 0.00 3.67
303 304 1.671166 CATGGTCGGAGGTGTGACA 59.329 57.895 0.00 0.00 36.83 3.58
304 305 0.390340 CATGGTCGGAGGTGTGACAG 60.390 60.000 0.00 0.00 36.83 3.51
305 306 1.544825 ATGGTCGGAGGTGTGACAGG 61.545 60.000 0.00 0.00 36.83 4.00
306 307 2.207924 GGTCGGAGGTGTGACAGGT 61.208 63.158 0.00 0.00 36.83 4.00
307 308 1.289380 GTCGGAGGTGTGACAGGTC 59.711 63.158 0.00 0.00 35.20 3.85
308 309 2.258591 CGGAGGTGTGACAGGTCG 59.741 66.667 0.00 0.00 0.00 4.79
309 310 2.048127 GGAGGTGTGACAGGTCGC 60.048 66.667 6.05 6.05 40.32 5.19
310 311 2.048127 GAGGTGTGACAGGTCGCC 60.048 66.667 10.20 5.22 39.23 5.54
311 312 3.916392 GAGGTGTGACAGGTCGCCG 62.916 68.421 10.20 0.00 39.23 6.46
331 332 3.426568 GCTGCGTTGGAGCACCTC 61.427 66.667 5.38 0.00 42.92 3.85
332 333 2.031012 CTGCGTTGGAGCACCTCA 59.969 61.111 0.71 0.00 42.92 3.86
333 334 1.376424 CTGCGTTGGAGCACCTCAT 60.376 57.895 0.71 0.00 42.92 2.90
334 335 1.642037 CTGCGTTGGAGCACCTCATG 61.642 60.000 0.71 0.00 42.92 3.07
343 344 3.710044 CACCTCATGCCGATGTCG 58.290 61.111 0.00 0.00 39.44 4.35
344 345 2.202932 ACCTCATGCCGATGTCGC 60.203 61.111 0.00 0.00 38.18 5.19
345 346 3.333189 CCTCATGCCGATGTCGCG 61.333 66.667 0.00 0.00 38.18 5.87
352 353 2.813474 CCGATGTCGCGGCTGAAA 60.813 61.111 13.81 0.00 45.38 2.69
353 354 2.173669 CCGATGTCGCGGCTGAAAT 61.174 57.895 13.81 0.00 45.38 2.17
354 355 1.011904 CGATGTCGCGGCTGAAATG 60.012 57.895 13.81 0.00 0.00 2.32
355 356 1.420641 CGATGTCGCGGCTGAAATGA 61.421 55.000 13.81 0.00 0.00 2.57
356 357 0.726827 GATGTCGCGGCTGAAATGAA 59.273 50.000 13.81 0.00 0.00 2.57
357 358 0.729116 ATGTCGCGGCTGAAATGAAG 59.271 50.000 13.81 0.00 0.00 3.02
358 359 1.226128 GTCGCGGCTGAAATGAAGC 60.226 57.895 1.90 0.00 40.06 3.86
359 360 1.670730 TCGCGGCTGAAATGAAGCA 60.671 52.632 6.13 0.00 42.69 3.91
360 361 1.026182 TCGCGGCTGAAATGAAGCAT 61.026 50.000 6.13 0.00 42.69 3.79
361 362 0.864377 CGCGGCTGAAATGAAGCATG 60.864 55.000 0.00 0.00 42.69 4.06
362 363 0.526954 GCGGCTGAAATGAAGCATGG 60.527 55.000 0.00 0.00 42.69 3.66
363 364 0.526954 CGGCTGAAATGAAGCATGGC 60.527 55.000 0.00 0.00 42.69 4.40
364 365 0.822164 GGCTGAAATGAAGCATGGCT 59.178 50.000 0.00 0.00 42.69 4.75
365 366 1.470979 GGCTGAAATGAAGCATGGCTG 60.471 52.381 0.00 0.00 42.69 4.85
366 367 1.470979 GCTGAAATGAAGCATGGCTGG 60.471 52.381 0.00 0.00 39.62 4.85
367 368 2.097036 CTGAAATGAAGCATGGCTGGA 58.903 47.619 0.00 0.00 39.62 3.86
368 369 2.097036 TGAAATGAAGCATGGCTGGAG 58.903 47.619 0.00 0.00 39.62 3.86
369 370 0.822164 AAATGAAGCATGGCTGGAGC 59.178 50.000 0.00 0.00 39.62 4.70
370 371 0.033405 AATGAAGCATGGCTGGAGCT 60.033 50.000 0.00 0.00 39.62 4.09
371 372 0.752009 ATGAAGCATGGCTGGAGCTG 60.752 55.000 0.00 0.00 39.62 4.24
372 373 2.754658 AAGCATGGCTGGAGCTGC 60.755 61.111 0.00 0.00 39.62 5.25
375 376 3.200593 CATGGCTGGAGCTGCGAC 61.201 66.667 0.00 0.00 41.70 5.19
376 377 4.827087 ATGGCTGGAGCTGCGACG 62.827 66.667 0.00 0.00 41.70 5.12
380 381 4.803426 CTGGAGCTGCGACGGGTC 62.803 72.222 0.00 8.70 36.62 4.46
407 408 4.465512 GCGTTGGAGCACCGCATG 62.466 66.667 0.00 0.00 46.26 4.06
427 428 4.465512 GGTGTCGCCGCTGCAATG 62.466 66.667 0.00 0.00 37.32 2.82
428 429 3.422303 GTGTCGCCGCTGCAATGA 61.422 61.111 0.00 0.00 37.32 2.57
429 430 2.667874 TGTCGCCGCTGCAATGAA 60.668 55.556 0.00 0.00 37.32 2.57
430 431 2.099062 GTCGCCGCTGCAATGAAG 59.901 61.111 0.00 0.00 37.32 3.02
431 432 3.803082 TCGCCGCTGCAATGAAGC 61.803 61.111 2.35 2.35 37.32 3.86
432 433 4.105733 CGCCGCTGCAATGAAGCA 62.106 61.111 14.40 0.00 40.86 3.91
433 434 2.493030 GCCGCTGCAATGAAGCAT 59.507 55.556 14.40 0.00 44.68 3.79
434 435 1.876714 GCCGCTGCAATGAAGCATG 60.877 57.895 14.40 4.70 44.68 4.06
435 436 1.226859 CCGCTGCAATGAAGCATGG 60.227 57.895 14.40 3.26 44.68 3.66
436 437 1.876714 CGCTGCAATGAAGCATGGC 60.877 57.895 14.40 0.00 44.68 4.40
437 438 1.520787 GCTGCAATGAAGCATGGCC 60.521 57.895 8.65 0.00 44.68 5.36
438 439 1.226859 CTGCAATGAAGCATGGCCG 60.227 57.895 0.00 0.00 44.68 6.13
439 440 2.105528 GCAATGAAGCATGGCCGG 59.894 61.111 0.00 0.00 34.94 6.13
440 441 2.417257 GCAATGAAGCATGGCCGGA 61.417 57.895 5.05 0.00 34.94 5.14
441 442 1.731700 CAATGAAGCATGGCCGGAG 59.268 57.895 5.05 0.00 0.00 4.63
442 443 2.123428 AATGAAGCATGGCCGGAGC 61.123 57.895 5.05 2.48 38.76 4.70
443 444 2.563013 AATGAAGCATGGCCGGAGCT 62.563 55.000 5.05 10.26 41.03 4.09
444 445 3.207669 GAAGCATGGCCGGAGCTG 61.208 66.667 15.91 0.00 38.86 4.24
445 446 3.984193 GAAGCATGGCCGGAGCTGT 62.984 63.158 15.91 7.48 38.86 4.40
446 447 4.790962 AGCATGGCCGGAGCTGTG 62.791 66.667 14.66 0.00 37.20 3.66
447 448 4.783621 GCATGGCCGGAGCTGTGA 62.784 66.667 5.05 0.00 39.73 3.58
448 449 2.046023 CATGGCCGGAGCTGTGAA 60.046 61.111 5.05 0.00 39.73 3.18
449 450 2.110967 CATGGCCGGAGCTGTGAAG 61.111 63.158 5.05 0.00 39.73 3.02
450 451 3.335356 ATGGCCGGAGCTGTGAAGG 62.335 63.158 5.05 0.00 39.73 3.46
451 452 4.785453 GGCCGGAGCTGTGAAGGG 62.785 72.222 5.05 0.00 39.73 3.95
453 454 4.785453 CCGGAGCTGTGAAGGGCC 62.785 72.222 0.00 0.00 0.00 5.80
489 490 3.594775 CGGTGTTGGCAGCTGCAA 61.595 61.111 37.63 27.49 44.36 4.08
490 491 2.922950 CGGTGTTGGCAGCTGCAAT 61.923 57.895 37.63 0.00 44.36 3.56
491 492 1.373748 GGTGTTGGCAGCTGCAATG 60.374 57.895 37.63 2.80 44.36 2.82
492 493 1.373748 GTGTTGGCAGCTGCAATGG 60.374 57.895 37.63 0.81 44.36 3.16
493 494 2.433664 GTTGGCAGCTGCAATGGC 60.434 61.111 37.63 21.50 44.36 4.40
507 508 4.386951 TGGCACATCCCCGTGTCG 62.387 66.667 0.00 0.00 44.61 4.35
512 513 4.752879 CATCCCCGTGTCGCCGTT 62.753 66.667 0.00 0.00 0.00 4.44
513 514 4.752879 ATCCCCGTGTCGCCGTTG 62.753 66.667 0.00 0.00 0.00 4.10
518 519 4.059459 CGTGTCGCCGTTGCTGTC 62.059 66.667 0.00 0.00 34.43 3.51
519 520 2.964925 GTGTCGCCGTTGCTGTCA 60.965 61.111 0.00 0.00 34.43 3.58
520 521 2.202946 TGTCGCCGTTGCTGTCAA 60.203 55.556 0.00 0.00 34.43 3.18
521 522 1.815840 TGTCGCCGTTGCTGTCAAA 60.816 52.632 0.00 0.00 33.37 2.69
522 523 1.368850 GTCGCCGTTGCTGTCAAAC 60.369 57.895 0.00 0.00 33.37 2.93
523 524 2.425124 CGCCGTTGCTGTCAAACG 60.425 61.111 3.31 3.31 33.37 3.60
524 525 2.725815 GCCGTTGCTGTCAAACGC 60.726 61.111 4.58 0.00 33.37 4.84
525 526 2.051345 CCGTTGCTGTCAAACGCC 60.051 61.111 4.58 0.00 33.37 5.68
526 527 2.051345 CGTTGCTGTCAAACGCCC 60.051 61.111 0.00 0.00 33.37 6.13
527 528 2.829206 CGTTGCTGTCAAACGCCCA 61.829 57.895 0.00 0.00 33.37 5.36
528 529 1.008538 GTTGCTGTCAAACGCCCAG 60.009 57.895 0.00 0.00 33.37 4.45
530 531 4.043200 GCTGTCAAACGCCCAGCC 62.043 66.667 0.00 0.00 44.49 4.85
531 532 3.365265 CTGTCAAACGCCCAGCCC 61.365 66.667 0.00 0.00 0.00 5.19
532 533 3.850098 CTGTCAAACGCCCAGCCCT 62.850 63.158 0.00 0.00 0.00 5.19
533 534 3.365265 GTCAAACGCCCAGCCCTG 61.365 66.667 0.00 0.00 0.00 4.45
546 547 3.461773 CCCTGCCGACGACTGGAT 61.462 66.667 8.64 0.00 0.00 3.41
547 548 2.202797 CCTGCCGACGACTGGATG 60.203 66.667 0.62 0.00 0.00 3.51
548 549 2.887568 CTGCCGACGACTGGATGC 60.888 66.667 0.00 0.00 0.00 3.91
549 550 4.794439 TGCCGACGACTGGATGCG 62.794 66.667 0.00 0.00 0.00 4.73
552 553 4.498520 CGACGACTGGATGCGGCT 62.499 66.667 0.00 0.00 32.22 5.52
553 554 2.583593 GACGACTGGATGCGGCTC 60.584 66.667 0.00 0.00 31.57 4.70
554 555 3.069980 GACGACTGGATGCGGCTCT 62.070 63.158 0.00 0.00 31.57 4.09
555 556 2.185350 CGACTGGATGCGGCTCTT 59.815 61.111 0.00 0.00 0.00 2.85
556 557 2.169789 CGACTGGATGCGGCTCTTG 61.170 63.158 0.00 0.00 0.00 3.02
557 558 2.437359 ACTGGATGCGGCTCTTGC 60.437 61.111 0.00 0.00 38.76 4.01
558 559 2.124819 CTGGATGCGGCTCTTGCT 60.125 61.111 0.00 0.00 39.59 3.91
559 560 1.748122 CTGGATGCGGCTCTTGCTT 60.748 57.895 0.00 0.00 39.59 3.91
560 561 1.989966 CTGGATGCGGCTCTTGCTTG 61.990 60.000 0.00 0.00 39.59 4.01
561 562 2.101770 GATGCGGCTCTTGCTTGC 59.898 61.111 0.00 0.00 39.62 4.01
563 564 2.203972 GATGCGGCTCTTGCTTGCAA 62.204 55.000 7.83 7.83 46.78 4.08
564 565 1.808531 ATGCGGCTCTTGCTTGCAAA 61.809 50.000 9.39 0.83 46.78 3.68
585 586 3.793144 CGGCGCTGCTTTCTGGAC 61.793 66.667 7.64 0.00 0.00 4.02
586 587 3.793144 GGCGCTGCTTTCTGGACG 61.793 66.667 7.64 0.00 0.00 4.79
587 588 2.738521 GCGCTGCTTTCTGGACGA 60.739 61.111 0.00 0.00 0.00 4.20
588 589 3.016474 GCGCTGCTTTCTGGACGAC 62.016 63.158 0.00 0.00 0.00 4.34
589 590 1.373497 CGCTGCTTTCTGGACGACT 60.373 57.895 0.00 0.00 0.00 4.18
590 591 1.347817 CGCTGCTTTCTGGACGACTC 61.348 60.000 0.00 0.00 0.00 3.36
591 592 1.347817 GCTGCTTTCTGGACGACTCG 61.348 60.000 0.00 0.00 0.00 4.18
592 593 0.039074 CTGCTTTCTGGACGACTCGT 60.039 55.000 3.08 3.08 45.10 4.18
593 594 0.318699 TGCTTTCTGGACGACTCGTG 60.319 55.000 9.27 0.00 41.37 4.35
594 595 0.318784 GCTTTCTGGACGACTCGTGT 60.319 55.000 9.27 0.00 41.37 4.49
595 596 1.868519 GCTTTCTGGACGACTCGTGTT 60.869 52.381 9.27 0.00 41.37 3.32
596 597 2.470821 CTTTCTGGACGACTCGTGTTT 58.529 47.619 9.27 0.00 41.37 2.83
597 598 2.589798 TTCTGGACGACTCGTGTTTT 57.410 45.000 9.27 0.00 41.37 2.43
598 599 1.847818 TCTGGACGACTCGTGTTTTG 58.152 50.000 9.27 0.00 41.37 2.44
599 600 1.135527 TCTGGACGACTCGTGTTTTGT 59.864 47.619 9.27 0.00 41.37 2.83
600 601 1.931172 CTGGACGACTCGTGTTTTGTT 59.069 47.619 9.27 0.00 41.37 2.83
601 602 1.661617 TGGACGACTCGTGTTTTGTTG 59.338 47.619 9.27 0.00 41.37 3.33
602 603 1.662122 GGACGACTCGTGTTTTGTTGT 59.338 47.619 9.27 0.00 41.37 3.32
603 604 2.094734 GGACGACTCGTGTTTTGTTGTT 59.905 45.455 9.27 0.00 41.37 2.83
604 605 3.425227 GGACGACTCGTGTTTTGTTGTTT 60.425 43.478 9.27 0.00 41.37 2.83
605 606 3.739494 ACGACTCGTGTTTTGTTGTTTC 58.261 40.909 2.53 0.00 39.18 2.78
606 607 3.186817 ACGACTCGTGTTTTGTTGTTTCA 59.813 39.130 2.53 0.00 39.18 2.69
607 608 3.536837 CGACTCGTGTTTTGTTGTTTCAC 59.463 43.478 0.00 0.00 0.00 3.18
608 609 4.668177 CGACTCGTGTTTTGTTGTTTCACT 60.668 41.667 0.00 0.00 0.00 3.41
609 610 4.472286 ACTCGTGTTTTGTTGTTTCACTG 58.528 39.130 0.00 0.00 0.00 3.66
610 611 4.023536 ACTCGTGTTTTGTTGTTTCACTGT 60.024 37.500 0.00 0.00 0.00 3.55
611 612 4.222886 TCGTGTTTTGTTGTTTCACTGTG 58.777 39.130 0.17 0.17 0.00 3.66
612 613 4.023963 TCGTGTTTTGTTGTTTCACTGTGA 60.024 37.500 6.36 6.36 0.00 3.58
613 614 4.677378 CGTGTTTTGTTGTTTCACTGTGAA 59.323 37.500 18.69 18.69 34.03 3.18
614 615 5.344665 CGTGTTTTGTTGTTTCACTGTGAAT 59.655 36.000 22.60 0.00 36.11 2.57
615 616 6.128956 CGTGTTTTGTTGTTTCACTGTGAATT 60.129 34.615 22.60 0.00 36.11 2.17
616 617 7.226772 GTGTTTTGTTGTTTCACTGTGAATTC 58.773 34.615 22.60 18.03 36.11 2.17
617 618 6.925718 TGTTTTGTTGTTTCACTGTGAATTCA 59.074 30.769 22.60 20.01 36.11 2.57
618 619 7.439356 TGTTTTGTTGTTTCACTGTGAATTCAA 59.561 29.630 22.60 23.56 36.11 2.69
619 620 6.942886 TTGTTGTTTCACTGTGAATTCAAC 57.057 33.333 34.03 34.03 43.39 3.18
620 621 5.092105 TGTTGTTTCACTGTGAATTCAACG 58.908 37.500 34.05 6.70 44.48 4.10
621 622 4.285807 TGTTTCACTGTGAATTCAACGG 57.714 40.909 22.60 11.73 36.11 4.44
622 623 3.042887 GTTTCACTGTGAATTCAACGGC 58.957 45.455 22.60 0.00 36.11 5.68
623 624 2.254546 TCACTGTGAATTCAACGGCT 57.745 45.000 10.35 0.00 0.00 5.52
624 625 2.571212 TCACTGTGAATTCAACGGCTT 58.429 42.857 10.35 0.00 0.00 4.35
625 626 2.548057 TCACTGTGAATTCAACGGCTTC 59.452 45.455 10.35 0.00 0.00 3.86
626 627 1.531149 ACTGTGAATTCAACGGCTTCG 59.469 47.619 10.35 0.00 40.22 3.79
627 628 1.798223 CTGTGAATTCAACGGCTTCGA 59.202 47.619 10.35 0.00 37.63 3.71
628 629 2.416547 CTGTGAATTCAACGGCTTCGAT 59.583 45.455 10.35 0.00 37.63 3.59
629 630 2.159430 TGTGAATTCAACGGCTTCGATG 59.841 45.455 10.35 0.00 37.90 3.84
630 631 1.737236 TGAATTCAACGGCTTCGATGG 59.263 47.619 5.45 0.00 37.30 3.51
631 632 2.006888 GAATTCAACGGCTTCGATGGA 58.993 47.619 0.00 0.00 37.30 3.41
632 633 2.107950 ATTCAACGGCTTCGATGGAA 57.892 45.000 0.00 0.00 37.30 3.53
641 642 2.141535 CTTCGATGGAAGGATCGGAC 57.858 55.000 9.47 0.00 44.83 4.79
642 643 1.409064 CTTCGATGGAAGGATCGGACA 59.591 52.381 9.47 0.00 44.83 4.02
643 644 1.032794 TCGATGGAAGGATCGGACAG 58.967 55.000 0.00 0.00 44.41 3.51
644 645 1.032794 CGATGGAAGGATCGGACAGA 58.967 55.000 0.00 0.00 41.29 3.41
645 646 1.409064 CGATGGAAGGATCGGACAGAA 59.591 52.381 0.00 0.00 41.29 3.02
646 647 2.159099 CGATGGAAGGATCGGACAGAAA 60.159 50.000 0.00 0.00 41.29 2.52
647 648 3.493350 CGATGGAAGGATCGGACAGAAAT 60.493 47.826 0.00 0.00 41.29 2.17
648 649 3.543680 TGGAAGGATCGGACAGAAATC 57.456 47.619 0.00 0.00 0.00 2.17
649 650 2.837591 TGGAAGGATCGGACAGAAATCA 59.162 45.455 0.00 0.00 0.00 2.57
650 651 3.455910 TGGAAGGATCGGACAGAAATCAT 59.544 43.478 0.00 0.00 0.00 2.45
651 652 4.061596 GGAAGGATCGGACAGAAATCATC 58.938 47.826 0.00 0.00 0.00 2.92
652 653 3.760580 AGGATCGGACAGAAATCATCC 57.239 47.619 0.00 0.00 0.00 3.51
653 654 3.041211 AGGATCGGACAGAAATCATCCA 58.959 45.455 0.00 0.00 32.35 3.41
654 655 3.070734 AGGATCGGACAGAAATCATCCAG 59.929 47.826 0.00 0.00 32.35 3.86
655 656 2.315925 TCGGACAGAAATCATCCAGC 57.684 50.000 5.05 0.00 32.35 4.85
656 657 1.833630 TCGGACAGAAATCATCCAGCT 59.166 47.619 5.05 0.00 32.35 4.24
657 658 1.938577 CGGACAGAAATCATCCAGCTG 59.061 52.381 6.78 6.78 32.35 4.24
658 659 2.419159 CGGACAGAAATCATCCAGCTGA 60.419 50.000 17.39 1.21 32.35 4.26
659 660 3.743584 CGGACAGAAATCATCCAGCTGAT 60.744 47.826 17.39 3.92 37.47 2.90
660 661 3.814283 GGACAGAAATCATCCAGCTGATC 59.186 47.826 17.39 1.77 34.79 2.92
661 662 4.444591 GGACAGAAATCATCCAGCTGATCT 60.445 45.833 17.39 4.08 34.79 2.75
662 663 4.452825 ACAGAAATCATCCAGCTGATCTG 58.547 43.478 17.39 16.89 37.88 2.90
663 664 4.163649 ACAGAAATCATCCAGCTGATCTGA 59.836 41.667 17.39 14.64 45.72 3.27
664 665 4.752604 CAGAAATCATCCAGCTGATCTGAG 59.247 45.833 17.39 0.00 45.72 3.35
665 666 2.843401 ATCATCCAGCTGATCTGAGC 57.157 50.000 17.39 0.00 45.72 4.26
666 667 1.492764 TCATCCAGCTGATCTGAGCA 58.507 50.000 17.39 0.00 45.72 4.26
667 668 1.835531 TCATCCAGCTGATCTGAGCAA 59.164 47.619 17.39 0.00 45.72 3.91
668 669 1.941294 CATCCAGCTGATCTGAGCAAC 59.059 52.381 17.39 0.00 45.72 4.17
669 670 0.108472 TCCAGCTGATCTGAGCAACG 60.108 55.000 17.39 0.00 45.72 4.10
670 671 1.703438 CCAGCTGATCTGAGCAACGC 61.703 60.000 17.39 0.00 45.72 4.84
671 672 1.449246 AGCTGATCTGAGCAACGCC 60.449 57.895 7.70 0.00 41.83 5.68
672 673 2.467826 GCTGATCTGAGCAACGCCC 61.468 63.158 3.42 0.00 38.95 6.13
690 691 7.305763 GCAACGCCCTTAATTAATTGATAAACG 60.306 37.037 11.05 9.63 0.00 3.60
802 1373 4.910956 ACGTGTGGTGATCGATGG 57.089 55.556 0.54 0.00 0.00 3.51
803 1374 2.272923 ACGTGTGGTGATCGATGGA 58.727 52.632 0.54 0.00 0.00 3.41
829 1400 0.168788 TGTCCGTCACCGATTCGTAC 59.831 55.000 5.20 0.00 35.63 3.67
838 1409 0.591741 CCGATTCGTACCGAGTGAGC 60.592 60.000 5.20 0.00 37.14 4.26
876 1462 4.455533 CCGCAGCTTTGCCTATATATTCAA 59.544 41.667 0.00 0.00 0.00 2.69
877 1463 5.124457 CCGCAGCTTTGCCTATATATTCAAT 59.876 40.000 0.00 0.00 0.00 2.57
878 1464 6.253746 CGCAGCTTTGCCTATATATTCAATC 58.746 40.000 0.00 0.00 0.00 2.67
879 1465 6.128200 CGCAGCTTTGCCTATATATTCAATCA 60.128 38.462 0.00 0.00 0.00 2.57
913 1511 0.111253 ACCTAGCTGCAAAGCAAGGT 59.889 50.000 7.78 7.78 40.94 3.50
924 1531 0.104304 AAGCAAGGTCAGACGTTCGT 59.896 50.000 5.49 0.00 0.00 3.85
963 1577 7.657761 AGAATCGATCAGAAAACTAGTTTGTGT 59.342 33.333 21.22 6.18 40.52 3.72
964 1578 7.730364 ATCGATCAGAAAACTAGTTTGTGTT 57.270 32.000 21.22 15.48 40.52 3.32
965 1579 7.548196 TCGATCAGAAAACTAGTTTGTGTTT 57.452 32.000 21.22 12.96 40.52 2.83
966 1580 7.981142 TCGATCAGAAAACTAGTTTGTGTTTT 58.019 30.769 21.22 4.65 45.42 2.43
1142 2681 7.416326 CCCGGAGAATCTTTACTTAAATTTGGG 60.416 40.741 0.73 0.00 33.73 4.12
1157 2696 3.737559 TTTGGGATGCAGTTATGGTCT 57.262 42.857 0.00 0.00 0.00 3.85
1168 2707 4.219033 CAGTTATGGTCTTTGCGTTGTTC 58.781 43.478 0.00 0.00 0.00 3.18
1175 2714 0.027455 CTTTGCGTTGTTCGTGCTGA 59.973 50.000 0.00 0.00 42.13 4.26
1190 2729 1.228063 CTGATGCCCGAGGGAATGG 60.228 63.158 13.28 0.00 32.52 3.16
1269 2808 4.869861 GCCTGCAATTAAAAAGGTATGTGG 59.130 41.667 0.00 0.00 32.06 4.17
1314 2858 2.486203 TGTGCACTTCAGTTTTTGTCGT 59.514 40.909 19.41 0.00 0.00 4.34
1333 2877 2.799017 GTCCCCTTTAATTCCAACCGT 58.201 47.619 0.00 0.00 0.00 4.83
1338 2882 4.337274 CCCCTTTAATTCCAACCGTCATAC 59.663 45.833 0.00 0.00 0.00 2.39
1411 2955 1.065358 GTGCACAACATGAGCAATGC 58.935 50.000 13.17 0.00 44.93 3.56
1444 2988 4.560819 CGAAGGAGAGATCGTTCTTTTCAG 59.439 45.833 0.00 0.00 33.75 3.02
1529 3078 4.888239 TCTAGTATCTCTTGCTACACACCC 59.112 45.833 0.00 0.00 0.00 4.61
1532 3081 4.471386 AGTATCTCTTGCTACACACCCATT 59.529 41.667 0.00 0.00 0.00 3.16
1627 3180 4.037446 AGAGCATCGAGATACTGGAGAAAC 59.963 45.833 0.00 0.00 42.67 2.78
1630 3183 3.095912 TCGAGATACTGGAGAAACCCA 57.904 47.619 0.00 0.00 38.00 4.51
1669 3222 3.820467 GACAACAATTCAGTGGATGACCA 59.180 43.478 0.00 0.00 44.76 4.02
1721 3274 3.030291 TCAACCCCATGACATTATTGGC 58.970 45.455 0.00 0.00 0.00 4.52
1742 3295 3.053896 GTTGCAGGGTACGTGGCC 61.054 66.667 0.00 0.00 45.29 5.36
1960 3514 5.745294 GCAAGCACACATTATATTCTGGTTG 59.255 40.000 0.00 0.00 39.16 3.77
1961 3515 6.267817 CAAGCACACATTATATTCTGGTTGG 58.732 40.000 0.00 0.00 34.84 3.77
1963 3517 5.357878 AGCACACATTATATTCTGGTTGGTG 59.642 40.000 0.00 0.00 0.00 4.17
2043 3597 9.671279 TCTTCTTATGAAAGATGTTGCTGAATA 57.329 29.630 0.00 0.00 41.36 1.75
2092 3646 1.823797 TGGGTAACAATGTAACCGCC 58.176 50.000 0.00 0.00 33.03 6.13
2179 3733 5.515270 TGAAGAGTATGTAAAAGACGCATCG 59.485 40.000 0.00 0.00 0.00 3.84
2185 3739 4.748503 TGTAAAAGACGCATCGTTATCG 57.251 40.909 0.00 0.00 41.37 2.92
2192 3746 4.053983 AGACGCATCGTTATCGTAGTCTA 58.946 43.478 10.99 0.00 41.37 2.59
2221 3783 3.056304 GAGTTAATCGAGCTCCATCTGC 58.944 50.000 8.47 0.00 0.00 4.26
2284 3848 3.859411 TTTTCCAGAACACGCAAAAGT 57.141 38.095 0.00 0.00 0.00 2.66
2285 3849 3.859411 TTTCCAGAACACGCAAAAGTT 57.141 38.095 0.00 0.00 0.00 2.66
2286 3850 3.859411 TTCCAGAACACGCAAAAGTTT 57.141 38.095 0.00 0.00 0.00 2.66
2287 3851 3.859411 TCCAGAACACGCAAAAGTTTT 57.141 38.095 0.00 0.00 0.00 2.43
2288 3852 3.506810 TCCAGAACACGCAAAAGTTTTG 58.493 40.909 21.60 21.60 31.75 2.44
2289 3853 2.029124 CCAGAACACGCAAAAGTTTTGC 59.971 45.455 33.69 33.69 41.71 3.68
2290 3854 2.665537 CAGAACACGCAAAAGTTTTGCA 59.334 40.909 38.44 0.00 45.14 4.08
2291 3855 3.306703 CAGAACACGCAAAAGTTTTGCAT 59.693 39.130 38.44 29.07 45.14 3.96
2292 3856 3.932089 AGAACACGCAAAAGTTTTGCATT 59.068 34.783 38.44 30.86 45.14 3.56
2293 3857 4.391523 AGAACACGCAAAAGTTTTGCATTT 59.608 33.333 38.44 29.87 45.14 2.32
2294 3858 5.578727 AGAACACGCAAAAGTTTTGCATTTA 59.421 32.000 38.44 0.00 45.14 1.40
2295 3859 5.982465 ACACGCAAAAGTTTTGCATTTAT 57.018 30.435 38.44 22.92 45.14 1.40
2296 3860 6.356757 ACACGCAAAAGTTTTGCATTTATT 57.643 29.167 38.44 21.00 45.14 1.40
2297 3861 6.780127 ACACGCAAAAGTTTTGCATTTATTT 58.220 28.000 38.44 20.18 45.14 1.40
2298 3862 6.686253 ACACGCAAAAGTTTTGCATTTATTTG 59.314 30.769 38.44 26.58 45.14 2.32
2299 3863 5.680667 ACGCAAAAGTTTTGCATTTATTTGC 59.319 32.000 38.44 18.81 45.14 3.68
2308 3872 2.797491 GCATTTATTTGCAGGGTCGAC 58.203 47.619 7.13 7.13 42.31 4.20
2309 3873 2.163412 GCATTTATTTGCAGGGTCGACA 59.837 45.455 18.91 0.00 42.31 4.35
2310 3874 3.181487 GCATTTATTTGCAGGGTCGACAT 60.181 43.478 18.91 1.75 42.31 3.06
2311 3875 4.353737 CATTTATTTGCAGGGTCGACATG 58.646 43.478 18.91 16.06 0.00 3.21
2312 3876 3.342377 TTATTTGCAGGGTCGACATGA 57.658 42.857 18.91 0.34 0.00 3.07
2313 3877 2.425143 ATTTGCAGGGTCGACATGAT 57.575 45.000 18.91 2.73 0.00 2.45
2314 3878 2.198827 TTTGCAGGGTCGACATGATT 57.801 45.000 18.91 0.00 0.00 2.57
2315 3879 1.737838 TTGCAGGGTCGACATGATTC 58.262 50.000 18.91 3.86 0.00 2.52
2316 3880 0.107703 TGCAGGGTCGACATGATTCC 60.108 55.000 18.91 8.06 0.00 3.01
2317 3881 0.179000 GCAGGGTCGACATGATTCCT 59.821 55.000 18.91 10.43 34.64 3.36
2318 3882 1.407437 GCAGGGTCGACATGATTCCTT 60.407 52.381 18.91 0.00 32.81 3.36
2319 3883 2.941415 GCAGGGTCGACATGATTCCTTT 60.941 50.000 18.91 0.00 32.81 3.11
2320 3884 3.347216 CAGGGTCGACATGATTCCTTTT 58.653 45.455 18.91 0.00 32.81 2.27
2321 3885 3.375299 CAGGGTCGACATGATTCCTTTTC 59.625 47.826 18.91 0.00 32.81 2.29
2322 3886 3.264450 AGGGTCGACATGATTCCTTTTCT 59.736 43.478 18.91 0.00 31.59 2.52
2323 3887 3.623510 GGGTCGACATGATTCCTTTTCTC 59.376 47.826 18.91 0.00 0.00 2.87
2324 3888 4.253685 GGTCGACATGATTCCTTTTCTCA 58.746 43.478 18.91 0.00 0.00 3.27
2325 3889 4.695455 GGTCGACATGATTCCTTTTCTCAA 59.305 41.667 18.91 0.00 0.00 3.02
2326 3890 5.163814 GGTCGACATGATTCCTTTTCTCAAG 60.164 44.000 18.91 0.00 0.00 3.02
2327 3891 5.639506 GTCGACATGATTCCTTTTCTCAAGA 59.360 40.000 11.55 0.00 0.00 3.02
2328 3892 6.147821 GTCGACATGATTCCTTTTCTCAAGAA 59.852 38.462 11.55 0.00 0.00 2.52
2329 3893 6.147821 TCGACATGATTCCTTTTCTCAAGAAC 59.852 38.462 0.00 0.00 33.13 3.01
2330 3894 6.073058 CGACATGATTCCTTTTCTCAAGAACA 60.073 38.462 0.00 0.00 33.13 3.18
2331 3895 6.974965 ACATGATTCCTTTTCTCAAGAACAC 58.025 36.000 0.00 0.00 33.13 3.32
2332 3896 5.673337 TGATTCCTTTTCTCAAGAACACG 57.327 39.130 0.00 0.00 33.13 4.49
2411 3975 7.174946 AGGTAGATTTTGGTGAAACATGTAGTG 59.825 37.037 0.00 0.00 39.98 2.74
2413 3977 7.765695 AGATTTTGGTGAAACATGTAGTGAT 57.234 32.000 0.00 0.00 39.98 3.06
2414 3978 7.596494 AGATTTTGGTGAAACATGTAGTGATG 58.404 34.615 0.00 0.00 39.98 3.07
2416 3980 7.809546 TTTTGGTGAAACATGTAGTGATGTA 57.190 32.000 0.00 0.00 39.98 2.29
2418 3982 7.994425 TTGGTGAAACATGTAGTGATGTATT 57.006 32.000 0.00 0.00 39.98 1.89
2419 3983 7.609760 TGGTGAAACATGTAGTGATGTATTC 57.390 36.000 0.00 0.00 39.98 1.75
2420 3984 7.394016 TGGTGAAACATGTAGTGATGTATTCT 58.606 34.615 0.00 0.00 39.98 2.40
2421 3985 7.882791 TGGTGAAACATGTAGTGATGTATTCTT 59.117 33.333 0.00 0.00 39.98 2.52
2422 3986 8.391106 GGTGAAACATGTAGTGATGTATTCTTC 58.609 37.037 0.00 0.00 39.98 2.87
2423 3987 9.155975 GTGAAACATGTAGTGATGTATTCTTCT 57.844 33.333 0.00 0.00 35.43 2.85
2424 3988 9.725019 TGAAACATGTAGTGATGTATTCTTCTT 57.275 29.630 0.00 0.00 35.43 2.52
2452 4022 7.050377 TCTTCTTCTTCATTGACAAAGAGTGT 58.950 34.615 8.93 0.00 45.74 3.55
2504 4074 7.928307 AGTTGATACAAATACAATGAGCACT 57.072 32.000 0.00 0.00 0.00 4.40
2547 6497 5.221048 GCCAGTCTTGTGTATCTTTTTGTGT 60.221 40.000 0.00 0.00 0.00 3.72
2548 6498 6.017440 GCCAGTCTTGTGTATCTTTTTGTGTA 60.017 38.462 0.00 0.00 0.00 2.90
2549 6499 7.308589 GCCAGTCTTGTGTATCTTTTTGTGTAT 60.309 37.037 0.00 0.00 0.00 2.29
2550 6500 8.230486 CCAGTCTTGTGTATCTTTTTGTGTATC 58.770 37.037 0.00 0.00 0.00 2.24
2551 6501 8.230486 CAGTCTTGTGTATCTTTTTGTGTATCC 58.770 37.037 0.00 0.00 0.00 2.59
2552 6502 7.390718 AGTCTTGTGTATCTTTTTGTGTATCCC 59.609 37.037 0.00 0.00 0.00 3.85
2553 6503 7.174253 GTCTTGTGTATCTTTTTGTGTATCCCA 59.826 37.037 0.00 0.00 0.00 4.37
2554 6504 7.721842 TCTTGTGTATCTTTTTGTGTATCCCAA 59.278 33.333 0.00 0.00 0.00 4.12
2555 6505 7.825331 TGTGTATCTTTTTGTGTATCCCAAA 57.175 32.000 0.00 0.00 0.00 3.28
2556 6506 7.881142 TGTGTATCTTTTTGTGTATCCCAAAG 58.119 34.615 0.00 0.00 33.67 2.77
2557 6507 7.504238 TGTGTATCTTTTTGTGTATCCCAAAGT 59.496 33.333 0.00 0.00 33.67 2.66
2558 6508 7.807907 GTGTATCTTTTTGTGTATCCCAAAGTG 59.192 37.037 0.00 0.00 33.67 3.16
2559 6509 7.721842 TGTATCTTTTTGTGTATCCCAAAGTGA 59.278 33.333 0.00 0.00 33.67 3.41
2562 6512 8.017418 TCTTTTTGTGTATCCCAAAGTGAATT 57.983 30.769 0.00 0.00 33.67 2.17
2563 6513 8.482128 TCTTTTTGTGTATCCCAAAGTGAATTT 58.518 29.630 0.00 0.00 33.67 1.82
2564 6514 9.757227 CTTTTTGTGTATCCCAAAGTGAATTTA 57.243 29.630 0.00 0.00 33.67 1.40
2567 6517 9.703892 TTTGTGTATCCCAAAGTGAATTTAATG 57.296 29.630 0.00 0.00 0.00 1.90
2568 6518 7.835822 TGTGTATCCCAAAGTGAATTTAATGG 58.164 34.615 0.00 0.00 0.00 3.16
2652 6659 8.446599 AAAAATACATCCGAATCGAAATAGGT 57.553 30.769 3.36 0.00 0.00 3.08
2714 6722 9.043079 AGAATCTAAAAGTAAATACTTAGCGGC 57.957 33.333 6.27 0.00 45.17 6.53
2769 6817 1.612463 ACTCGTCAGACCAGGTAACAC 59.388 52.381 0.00 0.00 41.41 3.32
2795 6843 0.965866 AACCGATGCTCTGGTCGAGA 60.966 55.000 0.00 0.00 42.62 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 4.227134 CTCCACCATCCGCCGAGG 62.227 72.222 0.00 0.00 42.97 4.63
11 12 4.899239 GCTCCACCATCCGCCGAG 62.899 72.222 0.00 0.00 0.00 4.63
15 16 4.783621 TGCAGCTCCACCATCCGC 62.784 66.667 0.00 0.00 0.00 5.54
16 17 2.046023 TTGCAGCTCCACCATCCG 60.046 61.111 0.00 0.00 0.00 4.18
17 18 2.413142 GCTTGCAGCTCCACCATCC 61.413 63.158 0.00 0.00 38.45 3.51
18 19 2.758089 CGCTTGCAGCTCCACCATC 61.758 63.158 0.00 0.00 39.60 3.51
19 20 2.749044 CGCTTGCAGCTCCACCAT 60.749 61.111 0.00 0.00 39.60 3.55
25 26 3.497932 CTCAGCCGCTTGCAGCTC 61.498 66.667 0.00 0.00 44.83 4.09
26 27 3.839353 AACTCAGCCGCTTGCAGCT 62.839 57.895 0.00 0.00 44.83 4.24
27 28 3.360340 AACTCAGCCGCTTGCAGC 61.360 61.111 0.00 0.00 44.83 5.25
28 29 0.950555 TACAACTCAGCCGCTTGCAG 60.951 55.000 0.00 0.00 44.83 4.41
29 30 0.950555 CTACAACTCAGCCGCTTGCA 60.951 55.000 0.00 0.00 44.83 4.08
30 31 1.790387 CTACAACTCAGCCGCTTGC 59.210 57.895 0.00 0.00 41.71 4.01
31 32 0.950555 TGCTACAACTCAGCCGCTTG 60.951 55.000 0.00 0.00 38.29 4.01
32 33 0.951040 GTGCTACAACTCAGCCGCTT 60.951 55.000 0.00 0.00 38.29 4.68
33 34 1.374758 GTGCTACAACTCAGCCGCT 60.375 57.895 0.00 0.00 38.29 5.52
34 35 1.227999 TTGTGCTACAACTCAGCCGC 61.228 55.000 0.00 0.00 38.29 6.53
35 36 2.912986 TTGTGCTACAACTCAGCCG 58.087 52.632 0.00 0.00 38.29 5.52
43 44 0.876777 CCACGTCCGTTGTGCTACAA 60.877 55.000 0.00 0.00 35.42 2.41
44 45 1.300311 CCACGTCCGTTGTGCTACA 60.300 57.895 0.00 0.00 36.01 2.74
45 46 1.300388 ACCACGTCCGTTGTGCTAC 60.300 57.895 0.00 0.00 36.01 3.58
46 47 1.300311 CACCACGTCCGTTGTGCTA 60.300 57.895 10.49 0.00 35.52 3.49
47 48 2.587753 CACCACGTCCGTTGTGCT 60.588 61.111 10.49 0.00 35.52 4.40
48 49 2.466140 AACACCACGTCCGTTGTGC 61.466 57.895 19.91 0.00 43.04 4.57
49 50 1.350319 CAACACCACGTCCGTTGTG 59.650 57.895 18.80 18.80 44.27 3.33
50 51 1.078988 ACAACACCACGTCCGTTGT 60.079 52.632 16.95 16.95 46.25 3.32
51 52 1.350319 CACAACACCACGTCCGTTG 59.650 57.895 15.92 15.92 44.38 4.10
52 53 2.466140 GCACAACACCACGTCCGTT 61.466 57.895 0.00 0.00 0.00 4.44
53 54 2.893404 GCACAACACCACGTCCGT 60.893 61.111 0.00 0.00 0.00 4.69
54 55 3.995669 CGCACAACACCACGTCCG 61.996 66.667 0.00 0.00 0.00 4.79
55 56 4.307908 GCGCACAACACCACGTCC 62.308 66.667 0.30 0.00 0.00 4.79
56 57 4.307908 GGCGCACAACACCACGTC 62.308 66.667 10.83 0.00 0.00 4.34
77 78 1.592223 GTTCCACTACAGCTCCGCT 59.408 57.895 0.00 0.00 40.77 5.52
78 79 1.448013 GGTTCCACTACAGCTCCGC 60.448 63.158 0.00 0.00 0.00 5.54
79 80 0.537188 ATGGTTCCACTACAGCTCCG 59.463 55.000 0.00 0.00 0.00 4.63
80 81 1.407437 CCATGGTTCCACTACAGCTCC 60.407 57.143 2.57 0.00 0.00 4.70
81 82 2.014068 GCCATGGTTCCACTACAGCTC 61.014 57.143 14.67 0.00 0.00 4.09
82 83 0.035056 GCCATGGTTCCACTACAGCT 60.035 55.000 14.67 0.00 0.00 4.24
83 84 1.369091 CGCCATGGTTCCACTACAGC 61.369 60.000 14.67 0.00 0.00 4.40
84 85 0.744414 CCGCCATGGTTCCACTACAG 60.744 60.000 14.67 0.00 0.00 2.74
85 86 1.298340 CCGCCATGGTTCCACTACA 59.702 57.895 14.67 0.00 0.00 2.74
86 87 4.218722 CCGCCATGGTTCCACTAC 57.781 61.111 14.67 0.00 0.00 2.73
109 110 4.994471 TGCACTGCAGCTCCACCG 62.994 66.667 15.27 0.00 33.32 4.94
150 151 2.884087 ATTCACCGTAGCTCCGCACG 62.884 60.000 0.00 0.00 34.67 5.34
151 152 1.146358 GATTCACCGTAGCTCCGCAC 61.146 60.000 0.00 0.00 0.00 5.34
152 153 1.141019 GATTCACCGTAGCTCCGCA 59.859 57.895 0.00 0.00 0.00 5.69
153 154 1.944676 CGATTCACCGTAGCTCCGC 60.945 63.158 0.00 0.00 0.00 5.54
154 155 1.299165 CCGATTCACCGTAGCTCCG 60.299 63.158 0.00 0.00 0.00 4.63
155 156 1.591863 GCCGATTCACCGTAGCTCC 60.592 63.158 0.00 0.00 0.00 4.70
156 157 1.944676 CGCCGATTCACCGTAGCTC 60.945 63.158 0.00 0.00 0.00 4.09
157 158 2.104331 CGCCGATTCACCGTAGCT 59.896 61.111 0.00 0.00 0.00 3.32
158 159 3.627218 GCGCCGATTCACCGTAGC 61.627 66.667 0.00 0.00 0.00 3.58
159 160 2.104331 AGCGCCGATTCACCGTAG 59.896 61.111 2.29 0.00 0.00 3.51
160 161 2.202690 CAGCGCCGATTCACCGTA 60.203 61.111 2.29 0.00 0.00 4.02
161 162 4.373116 ACAGCGCCGATTCACCGT 62.373 61.111 2.29 0.00 0.00 4.83
162 163 3.853330 CACAGCGCCGATTCACCG 61.853 66.667 2.29 0.00 0.00 4.94
163 164 4.166011 GCACAGCGCCGATTCACC 62.166 66.667 2.29 0.00 32.94 4.02
164 165 3.121030 AGCACAGCGCCGATTCAC 61.121 61.111 2.29 0.00 44.04 3.18
165 166 3.120385 CAGCACAGCGCCGATTCA 61.120 61.111 2.29 0.00 44.04 2.57
166 167 4.527157 GCAGCACAGCGCCGATTC 62.527 66.667 2.29 0.00 44.04 2.52
178 179 2.203056 ACGCTCTTGTGTGCAGCA 60.203 55.556 0.00 0.00 35.34 4.41
179 180 2.553268 GACGCTCTTGTGTGCAGC 59.447 61.111 0.00 0.00 37.00 5.25
180 181 2.661566 CCGACGCTCTTGTGTGCAG 61.662 63.158 0.00 0.00 37.00 4.41
181 182 2.661537 CCGACGCTCTTGTGTGCA 60.662 61.111 0.00 0.00 37.00 4.57
182 183 2.355837 TCCGACGCTCTTGTGTGC 60.356 61.111 0.00 0.00 37.00 4.57
183 184 2.375766 GCTCCGACGCTCTTGTGTG 61.376 63.158 0.00 0.00 37.00 3.82
184 185 1.241990 TAGCTCCGACGCTCTTGTGT 61.242 55.000 0.00 0.00 41.30 3.72
185 186 0.798771 GTAGCTCCGACGCTCTTGTG 60.799 60.000 0.00 0.00 41.30 3.33
186 187 1.241990 TGTAGCTCCGACGCTCTTGT 61.242 55.000 0.00 0.00 41.30 3.16
187 188 0.524392 CTGTAGCTCCGACGCTCTTG 60.524 60.000 0.00 0.00 41.30 3.02
188 189 0.961358 ACTGTAGCTCCGACGCTCTT 60.961 55.000 0.00 0.00 41.30 2.85
189 190 1.377463 ACTGTAGCTCCGACGCTCT 60.377 57.895 0.00 0.00 41.30 4.09
190 191 1.226435 CACTGTAGCTCCGACGCTC 60.226 63.158 0.00 0.00 41.30 5.03
191 192 2.878429 CACTGTAGCTCCGACGCT 59.122 61.111 0.00 3.95 43.83 5.07
192 193 2.881352 GCACTGTAGCTCCGACGC 60.881 66.667 0.00 0.00 0.00 5.19
193 194 1.080772 TTGCACTGTAGCTCCGACG 60.081 57.895 0.00 0.00 34.99 5.12
194 195 0.319555 TGTTGCACTGTAGCTCCGAC 60.320 55.000 0.00 0.00 34.99 4.79
195 196 0.608130 ATGTTGCACTGTAGCTCCGA 59.392 50.000 0.00 0.00 34.99 4.55
196 197 0.723414 CATGTTGCACTGTAGCTCCG 59.277 55.000 0.00 0.00 34.99 4.63
197 198 1.734465 GACATGTTGCACTGTAGCTCC 59.266 52.381 0.00 0.00 34.99 4.70
198 199 1.391485 CGACATGTTGCACTGTAGCTC 59.609 52.381 0.00 0.00 34.99 4.09
199 200 1.432514 CGACATGTTGCACTGTAGCT 58.567 50.000 0.00 0.00 34.99 3.32
200 201 0.443869 CCGACATGTTGCACTGTAGC 59.556 55.000 7.65 0.00 0.00 3.58
201 202 1.995484 CTCCGACATGTTGCACTGTAG 59.005 52.381 7.65 0.00 0.00 2.74
202 203 1.939381 GCTCCGACATGTTGCACTGTA 60.939 52.381 7.65 0.00 0.00 2.74
203 204 1.230635 GCTCCGACATGTTGCACTGT 61.231 55.000 7.65 0.00 0.00 3.55
204 205 0.952497 AGCTCCGACATGTTGCACTG 60.952 55.000 7.65 0.00 0.00 3.66
205 206 0.952497 CAGCTCCGACATGTTGCACT 60.952 55.000 7.65 1.56 0.00 4.40
206 207 1.499056 CAGCTCCGACATGTTGCAC 59.501 57.895 7.65 0.00 0.00 4.57
207 208 2.327343 GCAGCTCCGACATGTTGCA 61.327 57.895 12.01 0.00 39.59 4.08
208 209 2.482374 GCAGCTCCGACATGTTGC 59.518 61.111 7.65 4.85 33.72 4.17
209 210 1.737735 TCGCAGCTCCGACATGTTG 60.738 57.895 0.00 6.06 31.36 3.33
210 211 2.656646 TCGCAGCTCCGACATGTT 59.343 55.556 0.00 0.00 31.36 2.71
234 235 2.406401 CTACAATGCAGCGCCAGC 59.594 61.111 14.83 14.83 45.58 4.85
235 236 2.400962 TGCTACAATGCAGCGCCAG 61.401 57.895 2.29 0.00 42.13 4.85
236 237 2.359726 TGCTACAATGCAGCGCCA 60.360 55.556 2.29 0.00 42.13 5.69
237 238 2.100991 GTGCTACAATGCAGCGCC 59.899 61.111 7.75 0.00 44.20 6.53
241 242 0.166597 CACGTGGTGCTACAATGCAG 59.833 55.000 7.95 0.00 44.20 4.41
242 243 2.243056 CACGTGGTGCTACAATGCA 58.757 52.632 7.95 0.00 41.05 3.96
262 263 1.647545 AATTGCAGCCCGTGACATCG 61.648 55.000 0.00 0.00 0.00 3.84
263 264 0.179156 CAATTGCAGCCCGTGACATC 60.179 55.000 0.00 0.00 0.00 3.06
264 265 0.608856 TCAATTGCAGCCCGTGACAT 60.609 50.000 0.00 0.00 0.00 3.06
265 266 1.228094 TCAATTGCAGCCCGTGACA 60.228 52.632 0.00 0.00 0.00 3.58
266 267 1.503542 CTCAATTGCAGCCCGTGAC 59.496 57.895 0.00 0.00 0.00 3.67
267 268 2.334946 GCTCAATTGCAGCCCGTGA 61.335 57.895 15.07 0.00 0.00 4.35
268 269 1.940883 ATGCTCAATTGCAGCCCGTG 61.941 55.000 20.15 0.00 46.71 4.94
269 270 1.679977 ATGCTCAATTGCAGCCCGT 60.680 52.632 20.15 9.16 46.71 5.28
270 271 1.226859 CATGCTCAATTGCAGCCCG 60.227 57.895 20.15 11.57 46.71 6.13
271 272 1.143183 CCATGCTCAATTGCAGCCC 59.857 57.895 20.15 2.08 46.71 5.19
272 273 0.179119 GACCATGCTCAATTGCAGCC 60.179 55.000 20.15 7.12 46.71 4.85
273 274 0.524816 CGACCATGCTCAATTGCAGC 60.525 55.000 17.68 17.68 46.71 5.25
274 275 0.099968 CCGACCATGCTCAATTGCAG 59.900 55.000 0.00 0.66 46.71 4.41
276 277 0.379669 CTCCGACCATGCTCAATTGC 59.620 55.000 0.00 0.00 0.00 3.56
277 278 1.019673 CCTCCGACCATGCTCAATTG 58.980 55.000 0.00 0.00 0.00 2.32
278 279 0.620556 ACCTCCGACCATGCTCAATT 59.379 50.000 0.00 0.00 0.00 2.32
279 280 0.107508 CACCTCCGACCATGCTCAAT 60.108 55.000 0.00 0.00 0.00 2.57
280 281 1.296392 CACCTCCGACCATGCTCAA 59.704 57.895 0.00 0.00 0.00 3.02
281 282 1.913262 ACACCTCCGACCATGCTCA 60.913 57.895 0.00 0.00 0.00 4.26
282 283 1.448540 CACACCTCCGACCATGCTC 60.449 63.158 0.00 0.00 0.00 4.26
283 284 1.913262 TCACACCTCCGACCATGCT 60.913 57.895 0.00 0.00 0.00 3.79
284 285 1.741770 GTCACACCTCCGACCATGC 60.742 63.158 0.00 0.00 0.00 4.06
285 286 0.390340 CTGTCACACCTCCGACCATG 60.390 60.000 0.00 0.00 0.00 3.66
286 287 1.544825 CCTGTCACACCTCCGACCAT 61.545 60.000 0.00 0.00 0.00 3.55
287 288 2.207229 CCTGTCACACCTCCGACCA 61.207 63.158 0.00 0.00 0.00 4.02
288 289 2.156051 GACCTGTCACACCTCCGACC 62.156 65.000 0.00 0.00 0.00 4.79
289 290 1.289380 GACCTGTCACACCTCCGAC 59.711 63.158 0.00 0.00 0.00 4.79
290 291 2.265904 CGACCTGTCACACCTCCGA 61.266 63.158 0.00 0.00 0.00 4.55
291 292 2.258591 CGACCTGTCACACCTCCG 59.741 66.667 0.00 0.00 0.00 4.63
292 293 2.048127 GCGACCTGTCACACCTCC 60.048 66.667 0.00 0.00 0.00 4.30
293 294 2.048127 GGCGACCTGTCACACCTC 60.048 66.667 0.00 0.00 0.00 3.85
294 295 3.991051 CGGCGACCTGTCACACCT 61.991 66.667 0.00 0.00 0.00 4.00
315 316 1.376424 ATGAGGTGCTCCAACGCAG 60.376 57.895 7.70 0.00 41.21 5.18
316 317 1.672030 CATGAGGTGCTCCAACGCA 60.672 57.895 7.70 0.15 35.06 5.24
317 318 3.181367 CATGAGGTGCTCCAACGC 58.819 61.111 7.70 0.00 35.89 4.84
326 327 2.528743 GCGACATCGGCATGAGGTG 61.529 63.158 0.00 0.00 42.70 4.00
327 328 2.202932 GCGACATCGGCATGAGGT 60.203 61.111 0.00 0.00 45.94 3.85
328 329 3.333189 CGCGACATCGGCATGAGG 61.333 66.667 0.00 0.00 40.23 3.86
329 330 3.333189 CCGCGACATCGGCATGAG 61.333 66.667 8.23 0.00 43.18 2.90
336 337 1.011904 CATTTCAGCCGCGACATCG 60.012 57.895 8.23 0.00 43.27 3.84
337 338 0.726827 TTCATTTCAGCCGCGACATC 59.273 50.000 8.23 0.00 0.00 3.06
338 339 0.729116 CTTCATTTCAGCCGCGACAT 59.271 50.000 8.23 0.00 0.00 3.06
339 340 1.911293 GCTTCATTTCAGCCGCGACA 61.911 55.000 8.23 0.00 0.00 4.35
340 341 1.226128 GCTTCATTTCAGCCGCGAC 60.226 57.895 8.23 0.00 0.00 5.19
341 342 1.026182 ATGCTTCATTTCAGCCGCGA 61.026 50.000 8.23 0.00 36.33 5.87
342 343 0.864377 CATGCTTCATTTCAGCCGCG 60.864 55.000 0.00 0.00 36.33 6.46
343 344 0.526954 CCATGCTTCATTTCAGCCGC 60.527 55.000 0.00 0.00 36.33 6.53
344 345 0.526954 GCCATGCTTCATTTCAGCCG 60.527 55.000 0.00 0.00 36.33 5.52
345 346 0.822164 AGCCATGCTTCATTTCAGCC 59.178 50.000 0.00 0.00 33.89 4.85
346 347 1.470979 CCAGCCATGCTTCATTTCAGC 60.471 52.381 0.00 0.00 36.40 4.26
347 348 2.097036 TCCAGCCATGCTTCATTTCAG 58.903 47.619 0.00 0.00 36.40 3.02
348 349 2.097036 CTCCAGCCATGCTTCATTTCA 58.903 47.619 0.00 0.00 36.40 2.69
349 350 1.202382 GCTCCAGCCATGCTTCATTTC 60.202 52.381 0.00 0.00 36.40 2.17
350 351 0.822164 GCTCCAGCCATGCTTCATTT 59.178 50.000 0.00 0.00 36.40 2.32
351 352 0.033405 AGCTCCAGCCATGCTTCATT 60.033 50.000 0.00 0.00 43.38 2.57
352 353 0.752009 CAGCTCCAGCCATGCTTCAT 60.752 55.000 0.00 0.00 43.38 2.57
353 354 1.378119 CAGCTCCAGCCATGCTTCA 60.378 57.895 0.00 0.00 43.38 3.02
354 355 2.772691 GCAGCTCCAGCCATGCTTC 61.773 63.158 5.72 0.00 43.38 3.86
355 356 2.754658 GCAGCTCCAGCCATGCTT 60.755 61.111 5.72 0.00 43.38 3.91
358 359 3.200593 GTCGCAGCTCCAGCCATG 61.201 66.667 0.00 0.00 43.38 3.66
359 360 4.827087 CGTCGCAGCTCCAGCCAT 62.827 66.667 0.00 0.00 43.38 4.40
363 364 4.803426 GACCCGTCGCAGCTCCAG 62.803 72.222 0.00 0.00 0.00 3.86
410 411 4.465512 CATTGCAGCGGCGACACC 62.466 66.667 12.98 0.00 45.35 4.16
411 412 2.839324 CTTCATTGCAGCGGCGACAC 62.839 60.000 12.98 0.00 45.35 3.67
412 413 2.667874 TTCATTGCAGCGGCGACA 60.668 55.556 12.98 1.48 45.35 4.35
413 414 2.099062 CTTCATTGCAGCGGCGAC 59.901 61.111 12.98 1.23 45.35 5.19
414 415 3.803082 GCTTCATTGCAGCGGCGA 61.803 61.111 12.98 0.00 45.35 5.54
415 416 3.405592 ATGCTTCATTGCAGCGGCG 62.406 57.895 0.51 0.51 46.71 6.46
416 417 1.876714 CATGCTTCATTGCAGCGGC 60.877 57.895 0.31 0.31 46.71 6.53
417 418 1.226859 CCATGCTTCATTGCAGCGG 60.227 57.895 3.88 0.00 46.71 5.52
418 419 1.876714 GCCATGCTTCATTGCAGCG 60.877 57.895 3.88 0.00 46.71 5.18
419 420 1.520787 GGCCATGCTTCATTGCAGC 60.521 57.895 0.00 0.99 46.71 5.25
420 421 1.226859 CGGCCATGCTTCATTGCAG 60.227 57.895 2.24 0.00 46.71 4.41
422 423 2.105528 CCGGCCATGCTTCATTGC 59.894 61.111 2.24 0.00 32.68 3.56
423 424 1.731700 CTCCGGCCATGCTTCATTG 59.268 57.895 2.24 0.00 0.00 2.82
424 425 2.123428 GCTCCGGCCATGCTTCATT 61.123 57.895 2.24 0.00 0.00 2.57
425 426 2.517875 GCTCCGGCCATGCTTCAT 60.518 61.111 2.24 0.00 0.00 2.57
426 427 3.720601 AGCTCCGGCCATGCTTCA 61.721 61.111 2.24 0.00 39.73 3.02
427 428 3.207669 CAGCTCCGGCCATGCTTC 61.208 66.667 10.87 0.00 39.73 3.86
428 429 4.039092 ACAGCTCCGGCCATGCTT 62.039 61.111 10.87 2.14 39.73 3.91
429 430 4.790962 CACAGCTCCGGCCATGCT 62.791 66.667 2.24 5.86 39.73 3.79
430 431 4.783621 TCACAGCTCCGGCCATGC 62.784 66.667 2.24 3.13 39.73 4.06
431 432 2.046023 TTCACAGCTCCGGCCATG 60.046 61.111 2.24 0.00 39.73 3.66
432 433 2.270205 CTTCACAGCTCCGGCCAT 59.730 61.111 2.24 0.00 39.73 4.40
433 434 4.020617 CCTTCACAGCTCCGGCCA 62.021 66.667 2.24 0.00 39.73 5.36
434 435 4.785453 CCCTTCACAGCTCCGGCC 62.785 72.222 0.00 0.00 39.73 6.13
436 437 4.785453 GGCCCTTCACAGCTCCGG 62.785 72.222 0.00 0.00 0.00 5.14
472 473 2.922950 ATTGCAGCTGCCAACACCG 61.923 57.895 34.64 0.00 41.18 4.94
473 474 1.373748 CATTGCAGCTGCCAACACC 60.374 57.895 34.64 7.29 41.18 4.16
474 475 1.373748 CCATTGCAGCTGCCAACAC 60.374 57.895 34.64 8.07 41.18 3.32
475 476 3.052954 CCATTGCAGCTGCCAACA 58.947 55.556 34.64 14.66 41.18 3.33
476 477 2.433664 GCCATTGCAGCTGCCAAC 60.434 61.111 34.64 16.34 41.18 3.77
477 478 2.918276 TGCCATTGCAGCTGCCAA 60.918 55.556 34.64 26.70 44.23 4.52
486 487 2.755469 ACGGGGATGTGCCATTGC 60.755 61.111 0.00 0.00 38.95 3.56
487 488 1.656818 GACACGGGGATGTGCCATTG 61.657 60.000 0.00 0.00 43.74 2.82
488 489 1.378514 GACACGGGGATGTGCCATT 60.379 57.895 0.00 0.00 43.74 3.16
489 490 2.272146 GACACGGGGATGTGCCAT 59.728 61.111 0.00 0.00 43.74 4.40
490 491 4.386951 CGACACGGGGATGTGCCA 62.387 66.667 0.00 0.00 43.74 4.92
495 496 4.752879 AACGGCGACACGGGGATG 62.753 66.667 16.62 0.00 38.39 3.51
496 497 4.752879 CAACGGCGACACGGGGAT 62.753 66.667 16.62 0.00 38.39 3.85
507 508 2.725815 GCGTTTGACAGCAACGGC 60.726 61.111 12.87 3.74 41.61 5.68
508 509 2.051345 GGCGTTTGACAGCAACGG 60.051 61.111 12.87 0.00 32.79 4.44
509 510 2.051345 GGGCGTTTGACAGCAACG 60.051 61.111 7.83 7.83 32.79 4.10
510 511 1.008538 CTGGGCGTTTGACAGCAAC 60.009 57.895 0.00 0.00 32.79 4.17
511 512 3.431055 CTGGGCGTTTGACAGCAA 58.569 55.556 0.00 0.00 34.54 3.91
514 515 3.365265 GGGCTGGGCGTTTGACAG 61.365 66.667 0.00 0.00 35.40 3.51
515 516 3.884774 AGGGCTGGGCGTTTGACA 61.885 61.111 0.00 0.00 0.00 3.58
516 517 3.365265 CAGGGCTGGGCGTTTGAC 61.365 66.667 0.00 0.00 0.00 3.18
529 530 3.461773 ATCCAGTCGTCGGCAGGG 61.462 66.667 8.54 4.83 0.00 4.45
530 531 2.202797 CATCCAGTCGTCGGCAGG 60.203 66.667 1.13 1.13 0.00 4.85
531 532 2.887568 GCATCCAGTCGTCGGCAG 60.888 66.667 0.00 0.00 0.00 4.85
532 533 4.794439 CGCATCCAGTCGTCGGCA 62.794 66.667 0.00 0.00 0.00 5.69
535 536 4.498520 AGCCGCATCCAGTCGTCG 62.499 66.667 0.00 0.00 0.00 5.12
536 537 2.564553 AAGAGCCGCATCCAGTCGTC 62.565 60.000 0.00 0.00 0.00 4.20
537 538 2.650116 AAGAGCCGCATCCAGTCGT 61.650 57.895 0.00 0.00 0.00 4.34
538 539 2.169789 CAAGAGCCGCATCCAGTCG 61.170 63.158 0.00 0.00 0.00 4.18
539 540 2.467826 GCAAGAGCCGCATCCAGTC 61.468 63.158 0.00 0.00 33.58 3.51
540 541 2.437359 GCAAGAGCCGCATCCAGT 60.437 61.111 0.00 0.00 33.58 4.00
541 542 1.748122 AAGCAAGAGCCGCATCCAG 60.748 57.895 0.00 0.00 43.56 3.86
542 543 2.042259 CAAGCAAGAGCCGCATCCA 61.042 57.895 0.00 0.00 43.56 3.41
543 544 2.796651 CAAGCAAGAGCCGCATCC 59.203 61.111 0.00 0.00 43.56 3.51
544 545 2.101770 GCAAGCAAGAGCCGCATC 59.898 61.111 0.00 0.00 43.56 3.91
545 546 1.808531 TTTGCAAGCAAGAGCCGCAT 61.809 50.000 7.60 0.00 45.55 4.73
546 547 2.410638 CTTTGCAAGCAAGAGCCGCA 62.411 55.000 7.60 0.00 44.88 5.69
547 548 1.731969 CTTTGCAAGCAAGAGCCGC 60.732 57.895 7.60 0.00 43.56 6.53
548 549 4.546637 CTTTGCAAGCAAGAGCCG 57.453 55.556 7.60 0.00 43.56 5.52
568 569 3.793144 GTCCAGAAAGCAGCGCCG 61.793 66.667 2.29 0.00 0.00 6.46
569 570 3.793144 CGTCCAGAAAGCAGCGCC 61.793 66.667 2.29 0.00 0.00 6.53
570 571 2.738521 TCGTCCAGAAAGCAGCGC 60.739 61.111 0.00 0.00 0.00 5.92
571 572 1.347817 GAGTCGTCCAGAAAGCAGCG 61.348 60.000 0.00 0.00 0.00 5.18
572 573 1.347817 CGAGTCGTCCAGAAAGCAGC 61.348 60.000 3.82 0.00 0.00 5.25
573 574 0.039074 ACGAGTCGTCCAGAAAGCAG 60.039 55.000 13.56 0.00 33.69 4.24
574 575 0.318699 CACGAGTCGTCCAGAAAGCA 60.319 55.000 16.86 0.00 38.32 3.91
575 576 0.318784 ACACGAGTCGTCCAGAAAGC 60.319 55.000 16.86 0.00 38.32 3.51
576 577 2.135664 AACACGAGTCGTCCAGAAAG 57.864 50.000 16.86 5.23 38.32 2.62
577 578 2.589798 AAACACGAGTCGTCCAGAAA 57.410 45.000 16.86 0.00 38.32 2.52
578 579 2.198406 CAAAACACGAGTCGTCCAGAA 58.802 47.619 16.86 0.00 38.32 3.02
579 580 1.135527 ACAAAACACGAGTCGTCCAGA 59.864 47.619 16.86 0.00 38.32 3.86
580 581 1.567504 ACAAAACACGAGTCGTCCAG 58.432 50.000 16.86 7.63 38.32 3.86
581 582 1.661617 CAACAAAACACGAGTCGTCCA 59.338 47.619 16.86 0.00 38.32 4.02
582 583 1.662122 ACAACAAAACACGAGTCGTCC 59.338 47.619 16.86 0.00 38.32 4.79
583 584 3.378959 AACAACAAAACACGAGTCGTC 57.621 42.857 16.86 0.00 38.32 4.20
584 585 3.186817 TGAAACAACAAAACACGAGTCGT 59.813 39.130 13.56 13.56 42.36 4.34
585 586 3.536837 GTGAAACAACAAAACACGAGTCG 59.463 43.478 11.85 11.85 36.32 4.18
586 587 4.553429 CAGTGAAACAACAAAACACGAGTC 59.447 41.667 0.00 0.00 41.43 3.36
587 588 4.023536 ACAGTGAAACAACAAAACACGAGT 60.024 37.500 0.00 0.00 41.43 4.18
588 589 4.320690 CACAGTGAAACAACAAAACACGAG 59.679 41.667 0.00 0.00 41.43 4.18
589 590 4.023963 TCACAGTGAAACAACAAAACACGA 60.024 37.500 0.00 0.00 41.43 4.35
590 591 4.222886 TCACAGTGAAACAACAAAACACG 58.777 39.130 0.00 0.00 41.43 4.49
591 592 6.704512 ATTCACAGTGAAACAACAAAACAC 57.295 33.333 19.92 0.00 40.12 3.32
592 593 6.925718 TGAATTCACAGTGAAACAACAAAACA 59.074 30.769 19.92 7.16 40.12 2.83
593 594 7.344910 TGAATTCACAGTGAAACAACAAAAC 57.655 32.000 19.92 5.02 40.12 2.43
594 595 7.358765 CGTTGAATTCACAGTGAAACAACAAAA 60.359 33.333 35.90 19.84 45.84 2.44
595 596 6.088749 CGTTGAATTCACAGTGAAACAACAAA 59.911 34.615 35.90 20.64 45.84 2.83
596 597 5.570973 CGTTGAATTCACAGTGAAACAACAA 59.429 36.000 35.90 27.32 45.84 2.83
597 598 5.092105 CGTTGAATTCACAGTGAAACAACA 58.908 37.500 35.90 24.98 45.84 3.33
598 599 4.499040 CCGTTGAATTCACAGTGAAACAAC 59.501 41.667 32.57 32.57 44.30 3.32
599 600 4.667262 CCGTTGAATTCACAGTGAAACAA 58.333 39.130 19.92 22.18 40.12 2.83
600 601 3.488384 GCCGTTGAATTCACAGTGAAACA 60.488 43.478 19.92 18.30 40.12 2.83
601 602 3.042887 GCCGTTGAATTCACAGTGAAAC 58.957 45.455 19.92 16.18 40.12 2.78
602 603 2.948979 AGCCGTTGAATTCACAGTGAAA 59.051 40.909 19.92 0.85 40.12 2.69
603 604 2.571212 AGCCGTTGAATTCACAGTGAA 58.429 42.857 18.42 18.42 41.09 3.18
604 605 2.254546 AGCCGTTGAATTCACAGTGA 57.745 45.000 7.89 0.00 0.00 3.41
605 606 2.662791 CGAAGCCGTTGAATTCACAGTG 60.663 50.000 7.89 0.00 0.00 3.66
606 607 1.531149 CGAAGCCGTTGAATTCACAGT 59.469 47.619 7.89 0.00 0.00 3.55
607 608 1.798223 TCGAAGCCGTTGAATTCACAG 59.202 47.619 7.89 5.02 37.05 3.66
608 609 1.872388 TCGAAGCCGTTGAATTCACA 58.128 45.000 7.89 0.00 37.05 3.58
609 610 2.476185 CCATCGAAGCCGTTGAATTCAC 60.476 50.000 7.89 2.92 37.61 3.18
610 611 1.737236 CCATCGAAGCCGTTGAATTCA 59.263 47.619 3.38 3.38 37.61 2.57
611 612 2.006888 TCCATCGAAGCCGTTGAATTC 58.993 47.619 0.00 0.00 37.61 2.17
612 613 2.107950 TCCATCGAAGCCGTTGAATT 57.892 45.000 0.00 0.00 37.61 2.17
613 614 2.009774 CTTCCATCGAAGCCGTTGAAT 58.990 47.619 0.00 0.00 39.21 2.57
614 615 1.438651 CTTCCATCGAAGCCGTTGAA 58.561 50.000 0.00 0.00 39.21 2.69
615 616 0.391130 CCTTCCATCGAAGCCGTTGA 60.391 55.000 0.00 0.00 43.66 3.18
616 617 0.391130 TCCTTCCATCGAAGCCGTTG 60.391 55.000 0.00 0.00 43.66 4.10
617 618 0.541863 ATCCTTCCATCGAAGCCGTT 59.458 50.000 0.00 0.00 43.66 4.44
618 619 0.105039 GATCCTTCCATCGAAGCCGT 59.895 55.000 0.00 0.00 43.66 5.68
619 620 2.906047 GATCCTTCCATCGAAGCCG 58.094 57.895 0.00 0.00 43.66 5.52
625 626 1.032794 TCTGTCCGATCCTTCCATCG 58.967 55.000 0.00 0.00 44.45 3.84
626 627 3.543680 TTTCTGTCCGATCCTTCCATC 57.456 47.619 0.00 0.00 0.00 3.51
627 628 3.455910 TGATTTCTGTCCGATCCTTCCAT 59.544 43.478 0.00 0.00 0.00 3.41
628 629 2.837591 TGATTTCTGTCCGATCCTTCCA 59.162 45.455 0.00 0.00 0.00 3.53
629 630 3.543680 TGATTTCTGTCCGATCCTTCC 57.456 47.619 0.00 0.00 0.00 3.46
630 631 4.061596 GGATGATTTCTGTCCGATCCTTC 58.938 47.826 0.00 0.00 0.00 3.46
631 632 3.455910 TGGATGATTTCTGTCCGATCCTT 59.544 43.478 0.00 0.00 34.72 3.36
632 633 3.041211 TGGATGATTTCTGTCCGATCCT 58.959 45.455 0.00 0.00 34.72 3.24
633 634 3.397482 CTGGATGATTTCTGTCCGATCC 58.603 50.000 0.00 0.00 34.72 3.36
634 635 2.805099 GCTGGATGATTTCTGTCCGATC 59.195 50.000 0.00 0.00 34.72 3.69
635 636 2.437281 AGCTGGATGATTTCTGTCCGAT 59.563 45.455 0.00 0.00 34.72 4.18
636 637 1.833630 AGCTGGATGATTTCTGTCCGA 59.166 47.619 0.00 0.00 34.72 4.55
637 638 1.938577 CAGCTGGATGATTTCTGTCCG 59.061 52.381 5.57 0.00 34.72 4.79
638 639 3.272574 TCAGCTGGATGATTTCTGTCC 57.727 47.619 15.13 0.00 0.00 4.02
639 640 4.512198 CAGATCAGCTGGATGATTTCTGTC 59.488 45.833 15.13 0.00 40.02 3.51
640 641 4.163649 TCAGATCAGCTGGATGATTTCTGT 59.836 41.667 15.13 0.00 44.98 3.41
641 642 4.704965 TCAGATCAGCTGGATGATTTCTG 58.295 43.478 15.13 13.72 44.98 3.02
642 643 4.744259 GCTCAGATCAGCTGGATGATTTCT 60.744 45.833 15.13 2.65 44.98 2.52
643 644 3.499157 GCTCAGATCAGCTGGATGATTTC 59.501 47.826 15.13 4.89 44.98 2.17
644 645 3.118000 TGCTCAGATCAGCTGGATGATTT 60.118 43.478 15.13 0.00 44.98 2.17
645 646 2.438392 TGCTCAGATCAGCTGGATGATT 59.562 45.455 15.13 0.00 44.98 2.57
646 647 2.047830 TGCTCAGATCAGCTGGATGAT 58.952 47.619 15.13 0.00 44.98 2.45
647 648 1.492764 TGCTCAGATCAGCTGGATGA 58.507 50.000 15.13 14.06 44.98 2.92
648 649 1.941294 GTTGCTCAGATCAGCTGGATG 59.059 52.381 15.13 10.41 44.98 3.51
649 650 1.472904 CGTTGCTCAGATCAGCTGGAT 60.473 52.381 15.13 6.11 44.98 3.41
650 651 0.108472 CGTTGCTCAGATCAGCTGGA 60.108 55.000 15.13 1.70 44.98 3.86
651 652 1.703438 GCGTTGCTCAGATCAGCTGG 61.703 60.000 15.13 0.00 44.98 4.85
652 653 1.703438 GGCGTTGCTCAGATCAGCTG 61.703 60.000 7.63 7.63 46.31 4.24
653 654 1.449246 GGCGTTGCTCAGATCAGCT 60.449 57.895 6.60 0.00 40.39 4.24
654 655 2.467826 GGGCGTTGCTCAGATCAGC 61.468 63.158 0.00 0.00 40.13 4.26
655 656 0.392193 AAGGGCGTTGCTCAGATCAG 60.392 55.000 0.00 0.00 0.00 2.90
656 657 0.901827 TAAGGGCGTTGCTCAGATCA 59.098 50.000 2.08 0.00 0.00 2.92
657 658 2.024176 TTAAGGGCGTTGCTCAGATC 57.976 50.000 2.08 0.00 0.00 2.75
658 659 2.717639 ATTAAGGGCGTTGCTCAGAT 57.282 45.000 2.08 0.00 0.00 2.90
659 660 2.489938 AATTAAGGGCGTTGCTCAGA 57.510 45.000 2.08 0.00 0.00 3.27
660 661 4.900635 ATTAATTAAGGGCGTTGCTCAG 57.099 40.909 3.94 0.00 0.00 3.35
661 662 4.702612 TCAATTAATTAAGGGCGTTGCTCA 59.297 37.500 0.00 0.00 0.00 4.26
662 663 5.243426 TCAATTAATTAAGGGCGTTGCTC 57.757 39.130 0.00 0.00 0.00 4.26
663 664 5.852282 ATCAATTAATTAAGGGCGTTGCT 57.148 34.783 0.00 0.00 0.00 3.91
664 665 7.305763 CGTTTATCAATTAATTAAGGGCGTTGC 60.306 37.037 0.00 0.00 0.00 4.17
665 666 7.166804 CCGTTTATCAATTAATTAAGGGCGTTG 59.833 37.037 0.00 3.50 0.00 4.10
666 667 7.067251 TCCGTTTATCAATTAATTAAGGGCGTT 59.933 33.333 12.35 0.00 0.00 4.84
667 668 6.543100 TCCGTTTATCAATTAATTAAGGGCGT 59.457 34.615 12.35 0.00 0.00 5.68
668 669 6.961576 TCCGTTTATCAATTAATTAAGGGCG 58.038 36.000 12.35 8.36 0.00 6.13
669 670 8.626526 TCTTCCGTTTATCAATTAATTAAGGGC 58.373 33.333 12.35 0.00 0.00 5.19
690 691 6.909357 CGATTTGCAACTGATTTATCTCTTCC 59.091 38.462 0.00 0.00 0.00 3.46
838 1409 1.060622 GCGGAGTACTCGACGAGTG 59.939 63.158 34.75 21.13 43.30 3.51
876 1462 5.340194 GCTAGGTAGGTAGGTAGGCTATGAT 60.340 48.000 0.00 0.00 0.00 2.45
877 1463 4.018597 GCTAGGTAGGTAGGTAGGCTATGA 60.019 50.000 0.00 0.00 0.00 2.15
878 1464 4.018233 AGCTAGGTAGGTAGGTAGGCTATG 60.018 50.000 0.00 0.00 31.28 2.23
879 1465 4.018233 CAGCTAGGTAGGTAGGTAGGCTAT 60.018 50.000 0.00 0.00 31.93 2.97
913 1511 2.296831 TGTTTCCAACGAACGTCTGA 57.703 45.000 0.00 0.00 0.00 3.27
924 1531 9.830975 TTCTGATCGATTCTAATATGTTTCCAA 57.169 29.630 0.00 0.00 0.00 3.53
963 1577 3.948473 TGGACGATGGTGAAAAGTGAAAA 59.052 39.130 0.00 0.00 0.00 2.29
964 1578 3.546724 TGGACGATGGTGAAAAGTGAAA 58.453 40.909 0.00 0.00 0.00 2.69
965 1579 3.138304 CTGGACGATGGTGAAAAGTGAA 58.862 45.455 0.00 0.00 0.00 3.18
966 1580 2.766313 CTGGACGATGGTGAAAAGTGA 58.234 47.619 0.00 0.00 0.00 3.41
967 1581 1.197721 GCTGGACGATGGTGAAAAGTG 59.802 52.381 0.00 0.00 0.00 3.16
968 1582 1.523758 GCTGGACGATGGTGAAAAGT 58.476 50.000 0.00 0.00 0.00 2.66
969 1583 0.804989 GGCTGGACGATGGTGAAAAG 59.195 55.000 0.00 0.00 0.00 2.27
1142 2681 2.420022 ACGCAAAGACCATAACTGCATC 59.580 45.455 0.00 0.00 33.19 3.91
1157 2696 0.660488 ATCAGCACGAACAACGCAAA 59.340 45.000 0.00 0.00 46.94 3.68
1175 2714 2.597340 CACCATTCCCTCGGGCAT 59.403 61.111 0.00 0.00 34.68 4.40
1190 2729 4.573162 GACACCCGTCACTAGCAC 57.427 61.111 0.00 0.00 42.13 4.40
1298 2842 2.092592 AGGGGACGACAAAAACTGAAGT 60.093 45.455 0.00 0.00 0.00 3.01
1305 2849 4.894114 TGGAATTAAAGGGGACGACAAAAA 59.106 37.500 0.00 0.00 0.00 1.94
1306 2850 4.471548 TGGAATTAAAGGGGACGACAAAA 58.528 39.130 0.00 0.00 0.00 2.44
1314 2858 2.375845 TGACGGTTGGAATTAAAGGGGA 59.624 45.455 0.00 0.00 0.00 4.81
1333 2877 5.046159 TCCATGCATGCATCTATCAGTATGA 60.046 40.000 30.07 8.23 42.03 2.15
1338 2882 6.318900 ACATATTCCATGCATGCATCTATCAG 59.681 38.462 30.07 17.22 33.90 2.90
1411 2955 0.737715 CTCTCCTTCGCGGAAAGGTG 60.738 60.000 21.88 19.78 45.16 4.00
1444 2988 3.507233 TGGATGTTCAAAGCCATCAACTC 59.493 43.478 0.00 0.00 39.36 3.01
1595 3148 5.594725 AGTATCTCGATGCTCTTGAACCTAA 59.405 40.000 0.00 0.00 0.00 2.69
1604 3157 3.500448 TCTCCAGTATCTCGATGCTCT 57.500 47.619 0.00 0.00 31.23 4.09
1627 3180 4.010349 GTCTCCTTTGGTGAGTATTTGGG 58.990 47.826 0.00 0.00 0.00 4.12
1630 3183 5.690865 TGTTGTCTCCTTTGGTGAGTATTT 58.309 37.500 0.00 0.00 0.00 1.40
1706 3259 0.961019 CCCGGCCAATAATGTCATGG 59.039 55.000 2.24 0.00 37.29 3.66
1721 3274 4.011517 ACGTACCCTGCAACCCGG 62.012 66.667 0.00 0.00 0.00 5.73
1742 3295 4.745125 ACGCATGATAAGAGATAACAACCG 59.255 41.667 0.00 0.00 0.00 4.44
1796 3349 7.177921 ACGGTAGAGCAAGGTATATATAAAGCA 59.822 37.037 0.00 0.00 0.00 3.91
1853 3407 6.312426 TGTTAGCATTGGACAAAACACAAAAG 59.688 34.615 0.00 0.00 0.00 2.27
2092 3646 1.593006 GGTCGTCCACATAAATCTGCG 59.407 52.381 0.00 0.00 0.00 5.18
2108 3662 3.512680 GAACAAGACACTATGGAGGTCG 58.487 50.000 0.00 0.00 36.68 4.79
2110 3664 2.897969 ACGAACAAGACACTATGGAGGT 59.102 45.455 0.00 0.00 0.00 3.85
2179 3733 6.840075 ACTCTGTTGTGTAGACTACGATAAC 58.160 40.000 8.09 12.04 31.18 1.89
2185 3739 7.524912 TCGATTAACTCTGTTGTGTAGACTAC 58.475 38.462 5.62 5.62 0.00 2.73
2192 3746 4.238514 GAGCTCGATTAACTCTGTTGTGT 58.761 43.478 0.00 0.00 0.00 3.72
2221 3783 6.198966 GTGCTACAAAAATGACTTCAACAAGG 59.801 38.462 0.00 0.00 33.37 3.61
2269 3832 3.288243 GCAAAACTTTTGCGTGTTCTG 57.712 42.857 20.56 0.00 35.58 3.02
2288 3852 2.163412 TGTCGACCCTGCAAATAAATGC 59.837 45.455 14.12 0.00 46.58 3.56
2289 3853 4.096231 TCATGTCGACCCTGCAAATAAATG 59.904 41.667 14.12 5.48 0.00 2.32
2290 3854 4.269183 TCATGTCGACCCTGCAAATAAAT 58.731 39.130 14.12 0.00 0.00 1.40
2291 3855 3.680490 TCATGTCGACCCTGCAAATAAA 58.320 40.909 14.12 0.00 0.00 1.40
2292 3856 3.342377 TCATGTCGACCCTGCAAATAA 57.658 42.857 14.12 0.00 0.00 1.40
2293 3857 3.558931 ATCATGTCGACCCTGCAAATA 57.441 42.857 14.12 0.00 0.00 1.40
2294 3858 2.425143 ATCATGTCGACCCTGCAAAT 57.575 45.000 14.12 0.00 0.00 2.32
2295 3859 2.083774 GAATCATGTCGACCCTGCAAA 58.916 47.619 14.12 0.00 0.00 3.68
2296 3860 1.678728 GGAATCATGTCGACCCTGCAA 60.679 52.381 14.12 0.00 0.00 4.08
2297 3861 0.107703 GGAATCATGTCGACCCTGCA 60.108 55.000 14.12 0.00 0.00 4.41
2298 3862 0.179000 AGGAATCATGTCGACCCTGC 59.821 55.000 14.12 0.00 30.89 4.85
2299 3863 2.698855 AAGGAATCATGTCGACCCTG 57.301 50.000 14.12 10.86 32.08 4.45
2300 3864 3.264450 AGAAAAGGAATCATGTCGACCCT 59.736 43.478 14.12 8.07 32.83 4.34
2301 3865 3.610911 AGAAAAGGAATCATGTCGACCC 58.389 45.455 14.12 5.59 0.00 4.46
2302 3866 4.253685 TGAGAAAAGGAATCATGTCGACC 58.746 43.478 14.12 0.00 0.00 4.79
2303 3867 5.639506 TCTTGAGAAAAGGAATCATGTCGAC 59.360 40.000 9.11 9.11 0.00 4.20
2304 3868 5.793817 TCTTGAGAAAAGGAATCATGTCGA 58.206 37.500 0.00 0.00 0.00 4.20
2305 3869 6.073058 TGTTCTTGAGAAAAGGAATCATGTCG 60.073 38.462 0.00 0.00 35.58 4.35
2306 3870 7.080724 GTGTTCTTGAGAAAAGGAATCATGTC 58.919 38.462 0.00 0.00 35.58 3.06
2307 3871 6.293626 CGTGTTCTTGAGAAAAGGAATCATGT 60.294 38.462 0.00 0.00 35.58 3.21
2308 3872 6.073058 TCGTGTTCTTGAGAAAAGGAATCATG 60.073 38.462 4.32 0.00 34.38 3.07
2309 3873 5.997746 TCGTGTTCTTGAGAAAAGGAATCAT 59.002 36.000 4.32 0.00 34.38 2.45
2310 3874 5.364778 TCGTGTTCTTGAGAAAAGGAATCA 58.635 37.500 4.32 0.00 34.38 2.57
2311 3875 5.924475 TCGTGTTCTTGAGAAAAGGAATC 57.076 39.130 4.32 0.00 34.38 2.52
2312 3876 6.318900 ACTTTCGTGTTCTTGAGAAAAGGAAT 59.681 34.615 15.79 4.22 42.32 3.01
2313 3877 5.646360 ACTTTCGTGTTCTTGAGAAAAGGAA 59.354 36.000 12.61 12.61 41.59 3.36
2314 3878 5.183228 ACTTTCGTGTTCTTGAGAAAAGGA 58.817 37.500 2.94 2.94 35.19 3.36
2315 3879 5.294552 AGACTTTCGTGTTCTTGAGAAAAGG 59.705 40.000 0.00 0.00 35.58 3.11
2316 3880 6.351327 AGACTTTCGTGTTCTTGAGAAAAG 57.649 37.500 0.00 0.00 35.58 2.27
2317 3881 6.542852 CAAGACTTTCGTGTTCTTGAGAAAA 58.457 36.000 4.85 0.00 39.87 2.29
2318 3882 5.447279 GCAAGACTTTCGTGTTCTTGAGAAA 60.447 40.000 13.42 0.00 39.87 2.52
2319 3883 4.034048 GCAAGACTTTCGTGTTCTTGAGAA 59.966 41.667 13.42 0.00 39.87 2.87
2320 3884 3.555956 GCAAGACTTTCGTGTTCTTGAGA 59.444 43.478 13.42 0.00 39.87 3.27
2321 3885 3.309682 TGCAAGACTTTCGTGTTCTTGAG 59.690 43.478 13.42 0.00 39.87 3.02
2322 3886 3.266636 TGCAAGACTTTCGTGTTCTTGA 58.733 40.909 13.42 0.00 39.87 3.02
2323 3887 3.673746 TGCAAGACTTTCGTGTTCTTG 57.326 42.857 6.26 6.26 40.29 3.02
2324 3888 4.900635 AATGCAAGACTTTCGTGTTCTT 57.099 36.364 0.00 0.00 0.00 2.52
2325 3889 4.900635 AAATGCAAGACTTTCGTGTTCT 57.099 36.364 0.00 0.00 0.00 3.01
2326 3890 7.493313 CAAATAAATGCAAGACTTTCGTGTTC 58.507 34.615 0.00 0.00 0.00 3.18
2327 3891 6.074356 GCAAATAAATGCAAGACTTTCGTGTT 60.074 34.615 0.00 0.00 45.70 3.32
2328 3892 5.402270 GCAAATAAATGCAAGACTTTCGTGT 59.598 36.000 0.00 0.00 45.70 4.49
2329 3893 5.836009 GCAAATAAATGCAAGACTTTCGTG 58.164 37.500 0.00 0.00 45.70 4.35
2341 3905 2.173964 GTCGACCGTGCAAATAAATGC 58.826 47.619 3.51 0.00 46.58 3.56
2418 3982 9.177608 TGTCAATGAAGAAGAAGAAAAAGAAGA 57.822 29.630 0.00 0.00 0.00 2.87
2419 3983 9.793252 TTGTCAATGAAGAAGAAGAAAAAGAAG 57.207 29.630 0.00 0.00 0.00 2.85
2421 3985 9.793252 CTTTGTCAATGAAGAAGAAGAAAAAGA 57.207 29.630 0.00 0.00 34.02 2.52
2422 3986 9.793252 TCTTTGTCAATGAAGAAGAAGAAAAAG 57.207 29.630 6.98 0.00 33.65 2.27
2423 3987 9.793252 CTCTTTGTCAATGAAGAAGAAGAAAAA 57.207 29.630 9.73 0.00 31.99 1.94
2424 3988 8.960591 ACTCTTTGTCAATGAAGAAGAAGAAAA 58.039 29.630 9.73 0.00 31.99 2.29
2425 3989 8.400947 CACTCTTTGTCAATGAAGAAGAAGAAA 58.599 33.333 9.73 0.00 31.99 2.52
2504 4074 3.010027 TGGCCAATGTAGAGACCAAATGA 59.990 43.478 0.61 0.00 0.00 2.57
2512 4082 2.906389 ACAAGACTGGCCAATGTAGAGA 59.094 45.455 7.01 0.00 0.00 3.10
2517 4087 2.949177 TACACAAGACTGGCCAATGT 57.051 45.000 7.01 0.81 0.00 2.71
2547 6497 8.923270 GGATTCCATTAAATTCACTTTGGGATA 58.077 33.333 0.00 0.00 0.00 2.59
2548 6498 7.147497 GGGATTCCATTAAATTCACTTTGGGAT 60.147 37.037 4.80 0.00 0.00 3.85
2549 6499 6.156083 GGGATTCCATTAAATTCACTTTGGGA 59.844 38.462 4.80 0.00 0.00 4.37
2550 6500 6.070309 TGGGATTCCATTAAATTCACTTTGGG 60.070 38.462 4.80 0.00 38.32 4.12
2551 6501 6.945218 TGGGATTCCATTAAATTCACTTTGG 58.055 36.000 4.80 0.00 38.32 3.28
2552 6502 7.043565 CCTGGGATTCCATTAAATTCACTTTG 58.956 38.462 4.80 0.00 43.11 2.77
2553 6503 6.156775 CCCTGGGATTCCATTAAATTCACTTT 59.843 38.462 7.01 0.00 43.11 2.66
2554 6504 5.662657 CCCTGGGATTCCATTAAATTCACTT 59.337 40.000 7.01 0.00 43.11 3.16
2555 6505 5.211201 CCCTGGGATTCCATTAAATTCACT 58.789 41.667 7.01 0.00 43.11 3.41
2556 6506 4.962362 ACCCTGGGATTCCATTAAATTCAC 59.038 41.667 22.23 0.00 43.11 3.18
2557 6507 4.961730 CACCCTGGGATTCCATTAAATTCA 59.038 41.667 22.23 0.00 43.11 2.57
2558 6508 5.208121 TCACCCTGGGATTCCATTAAATTC 58.792 41.667 22.23 0.00 43.11 2.17
2559 6509 5.219468 TCACCCTGGGATTCCATTAAATT 57.781 39.130 22.23 0.00 43.11 1.82
2562 6512 4.898014 ATTCACCCTGGGATTCCATTAA 57.102 40.909 22.23 1.83 43.11 1.40
2563 6513 4.898014 AATTCACCCTGGGATTCCATTA 57.102 40.909 22.23 0.00 43.11 1.90
2564 6514 3.782413 AATTCACCCTGGGATTCCATT 57.218 42.857 22.23 7.11 43.11 3.16
2566 6516 4.683766 TTAAATTCACCCTGGGATTCCA 57.316 40.909 22.23 0.00 41.58 3.53
2567 6517 4.344968 CCATTAAATTCACCCTGGGATTCC 59.655 45.833 22.23 0.00 0.00 3.01
2568 6518 5.208121 TCCATTAAATTCACCCTGGGATTC 58.792 41.667 22.23 0.00 0.00 2.52
2576 6579 7.562454 TTCTCGTATTCCATTAAATTCACCC 57.438 36.000 0.00 0.00 0.00 4.61
2630 6637 6.994221 AGACCTATTTCGATTCGGATGTATT 58.006 36.000 6.18 0.00 0.00 1.89
2632 6639 6.487668 TGTAGACCTATTTCGATTCGGATGTA 59.512 38.462 6.18 0.00 0.00 2.29
2637 6644 8.758633 ATATTTGTAGACCTATTTCGATTCGG 57.241 34.615 6.18 0.00 0.00 4.30
2695 6702 6.376177 GTGTTGCCGCTAAGTATTTACTTTT 58.624 36.000 8.19 0.00 43.57 2.27
2711 6719 5.747565 ACAATATGAATATTCGTGTTGCCG 58.252 37.500 31.28 17.94 44.29 5.69
2714 6722 8.397906 AGTTGGACAATATGAATATTCGTGTTG 58.602 33.333 30.41 30.41 45.26 3.33
2769 6817 1.377725 AGAGCATCGGTTTGCAGGG 60.378 57.895 8.28 0.00 45.23 4.45
2833 6881 1.745115 GAGCCATGCGCCTACAACA 60.745 57.895 4.18 0.00 38.78 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.