Multiple sequence alignment - TraesCS6B01G362500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G362500 chr6B 100.000 3078 0 0 1 3078 633918141 633915064 0.000000e+00 5685.0
1 TraesCS6B01G362500 chr6B 84.058 207 31 2 486 691 633917451 633917656 6.730000e-47 198.0
2 TraesCS6B01G362500 chr6B 76.519 362 61 14 400 741 538944257 538943900 3.150000e-40 176.0
3 TraesCS6B01G362500 chr6A 87.810 2543 177 48 589 3078 563712760 563710298 0.000000e+00 2856.0
4 TraesCS6B01G362500 chr6A 86.398 522 58 8 1 512 563713288 563712770 2.680000e-155 558.0
5 TraesCS6B01G362500 chr6D 90.109 2204 126 41 937 3078 420750121 420747948 0.000000e+00 2778.0
6 TraesCS6B01G362500 chr6D 90.123 162 13 1 1 159 420750689 420750528 1.120000e-49 207.0
7 TraesCS6B01G362500 chr2B 86.941 1432 111 46 1110 2500 15784170 15782774 0.000000e+00 1539.0
8 TraesCS6B01G362500 chr2B 86.788 1423 115 40 1110 2500 15720065 15718684 0.000000e+00 1519.0
9 TraesCS6B01G362500 chr2B 86.592 1432 116 46 1110 2500 15856626 15855230 0.000000e+00 1511.0
10 TraesCS6B01G362500 chr2B 85.413 569 52 15 1110 1657 15955594 15955036 2.070000e-156 562.0
11 TraesCS6B01G362500 chr2B 97.037 270 8 0 2809 3078 15718640 15718371 3.620000e-124 455.0
12 TraesCS6B01G362500 chr2B 96.296 270 10 0 2809 3078 15782730 15782461 7.830000e-121 444.0
13 TraesCS6B01G362500 chr2B 95.926 270 11 0 2809 3078 15855186 15854917 3.640000e-119 438.0
14 TraesCS6B01G362500 chrUn 86.831 1420 114 40 1110 2497 333311842 333313220 0.000000e+00 1519.0
15 TraesCS6B01G362500 chrUn 85.413 569 52 15 1110 1657 380900515 380899957 2.070000e-156 562.0
16 TraesCS6B01G362500 chrUn 97.037 270 8 0 2809 3078 333313267 333313536 3.620000e-124 455.0
17 TraesCS6B01G362500 chrUn 91.667 192 5 5 2038 2223 124974236 124974422 3.940000e-64 255.0
18 TraesCS6B01G362500 chrUn 91.146 192 6 5 2038 2223 259181286 259181472 1.830000e-62 250.0
19 TraesCS6B01G362500 chrUn 85.532 235 26 8 1614 1842 259180123 259180355 3.970000e-59 239.0
20 TraesCS6B01G362500 chrUn 74.055 397 70 16 400 773 189564132 189564518 6.930000e-27 132.0
21 TraesCS6B01G362500 chrUn 74.055 397 70 16 400 773 189577822 189578208 6.930000e-27 132.0
22 TraesCS6B01G362500 chrUn 73.804 397 71 16 400 773 279541070 279540684 3.220000e-25 126.0
23 TraesCS6B01G362500 chrUn 78.075 187 33 7 591 773 396344167 396343985 9.020000e-21 111.0
24 TraesCS6B01G362500 chr7A 88.878 1007 65 33 1514 2500 11677918 11676939 0.000000e+00 1195.0
25 TraesCS6B01G362500 chr7A 96.296 270 10 0 2809 3078 11676895 11676626 7.830000e-121 444.0
26 TraesCS6B01G362500 chr3B 83.835 996 90 29 1236 2206 745703905 745704854 0.000000e+00 881.0
27 TraesCS6B01G362500 chr4D 96.396 222 8 0 2857 3078 508464387 508464166 1.740000e-97 366.0
28 TraesCS6B01G362500 chr4D 87.660 235 27 2 2199 2432 366045067 366044834 3.910000e-69 272.0
29 TraesCS6B01G362500 chr4D 93.889 180 9 1 2668 2847 508472002 508471825 1.410000e-68 270.0
30 TraesCS6B01G362500 chr4D 88.000 75 9 0 400 474 46180187 46180113 4.230000e-14 89.8
31 TraesCS6B01G362500 chr3A 87.234 235 28 2 2199 2432 361577329 361577562 1.820000e-67 267.0
32 TraesCS6B01G362500 chr1A 75.815 368 70 15 407 761 521884845 521885206 5.280000e-38 169.0
33 TraesCS6B01G362500 chr7D 75.065 385 63 13 400 773 65391094 65391456 6.880000e-32 148.0
34 TraesCS6B01G362500 chr5A 74.479 384 70 16 412 773 692260922 692261299 1.150000e-29 141.0
35 TraesCS6B01G362500 chr1D 80.513 195 29 8 579 770 478172480 478172668 1.150000e-29 141.0
36 TraesCS6B01G362500 chr1D 83.333 150 20 5 579 726 478167454 478167600 1.930000e-27 134.0
37 TraesCS6B01G362500 chr4B 73.766 385 77 21 393 759 391542468 391542846 2.490000e-26 130.0
38 TraesCS6B01G362500 chr4B 74.324 370 65 18 401 751 567385619 567385261 2.490000e-26 130.0
39 TraesCS6B01G362500 chr4B 86.111 72 9 1 400 471 4570871 4570941 3.290000e-10 76.8
40 TraesCS6B01G362500 chr1B 78.495 186 34 6 588 770 526869110 526868928 1.940000e-22 117.0
41 TraesCS6B01G362500 chr7B 81.690 142 18 7 629 769 108481935 108481801 9.020000e-21 111.0
42 TraesCS6B01G362500 chr5B 73.090 301 58 15 403 687 684199571 684199278 5.470000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G362500 chr6B 633915064 633918141 3077 True 5685.0 5685 100.0000 1 3078 1 chr6B.!!$R2 3077
1 TraesCS6B01G362500 chr6A 563710298 563713288 2990 True 1707.0 2856 87.1040 1 3078 2 chr6A.!!$R1 3077
2 TraesCS6B01G362500 chr6D 420747948 420750689 2741 True 1492.5 2778 90.1160 1 3078 2 chr6D.!!$R1 3077
3 TraesCS6B01G362500 chr2B 15782461 15784170 1709 True 991.5 1539 91.6185 1110 3078 2 chr2B.!!$R3 1968
4 TraesCS6B01G362500 chr2B 15718371 15720065 1694 True 987.0 1519 91.9125 1110 3078 2 chr2B.!!$R2 1968
5 TraesCS6B01G362500 chr2B 15854917 15856626 1709 True 974.5 1511 91.2590 1110 3078 2 chr2B.!!$R4 1968
6 TraesCS6B01G362500 chr2B 15955036 15955594 558 True 562.0 562 85.4130 1110 1657 1 chr2B.!!$R1 547
7 TraesCS6B01G362500 chrUn 333311842 333313536 1694 False 987.0 1519 91.9340 1110 3078 2 chrUn.!!$F5 1968
8 TraesCS6B01G362500 chrUn 380899957 380900515 558 True 562.0 562 85.4130 1110 1657 1 chrUn.!!$R2 547
9 TraesCS6B01G362500 chrUn 259180123 259181472 1349 False 244.5 250 88.3390 1614 2223 2 chrUn.!!$F4 609
10 TraesCS6B01G362500 chr7A 11676626 11677918 1292 True 819.5 1195 92.5870 1514 3078 2 chr7A.!!$R1 1564
11 TraesCS6B01G362500 chr3B 745703905 745704854 949 False 881.0 881 83.8350 1236 2206 1 chr3B.!!$F1 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 751 0.033504 ACACACTACCACTTGCGAGG 59.966 55.0 5.79 0.0 0.0 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2490 3566 0.996229 CTTTTGCGCGCATCAACGAA 60.996 50.0 36.83 22.26 34.06 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 5.862924 ACCAAGAGATGTACGTGAATTTG 57.137 39.130 0.00 0.00 0.00 2.32
58 59 6.981762 TTTGCACTGAATTTGTGATGTTTT 57.018 29.167 14.19 0.00 37.60 2.43
59 60 6.586868 TTGCACTGAATTTGTGATGTTTTC 57.413 33.333 14.19 0.00 37.60 2.29
82 83 0.179174 CTTGATTTAACGGCGGTGCC 60.179 55.000 8.19 0.00 46.75 5.01
171 350 3.388024 AGCCATTTTATGACTCCGAGCTA 59.612 43.478 0.00 0.00 0.00 3.32
178 357 2.362632 ACTCCGAGCTAGCCGGTT 60.363 61.111 30.86 21.48 46.53 4.44
179 358 2.105128 CTCCGAGCTAGCCGGTTG 59.895 66.667 30.86 23.73 46.53 3.77
181 360 3.771160 CCGAGCTAGCCGGTTGGT 61.771 66.667 26.91 3.50 41.91 3.67
221 401 3.686726 CCTCTCATGCACAAAAGAGGTAC 59.313 47.826 19.89 0.00 46.51 3.34
236 416 4.583871 AGAGGTACCTTCAAAATCTGCAG 58.416 43.478 17.53 7.63 0.00 4.41
261 441 6.406692 TGGAGCTATGATTTCACCTACTAC 57.593 41.667 0.00 0.00 0.00 2.73
263 443 6.611642 TGGAGCTATGATTTCACCTACTACTT 59.388 38.462 0.00 0.00 0.00 2.24
264 444 7.125811 TGGAGCTATGATTTCACCTACTACTTT 59.874 37.037 0.00 0.00 0.00 2.66
265 445 7.654116 GGAGCTATGATTTCACCTACTACTTTC 59.346 40.741 0.00 0.00 0.00 2.62
276 456 2.685850 ACTACTTTCGCATACCCACC 57.314 50.000 0.00 0.00 0.00 4.61
322 502 1.470098 ACAACATTCAGGCAATCGCTC 59.530 47.619 0.00 0.00 38.60 5.03
360 555 0.947244 GCCAATGATAAGGCCTGACG 59.053 55.000 5.69 0.00 45.18 4.35
361 556 1.475034 GCCAATGATAAGGCCTGACGA 60.475 52.381 5.69 0.00 45.18 4.20
362 557 2.487934 CCAATGATAAGGCCTGACGAG 58.512 52.381 5.69 0.00 0.00 4.18
363 558 2.487934 CAATGATAAGGCCTGACGAGG 58.512 52.381 5.69 0.00 43.19 4.63
364 559 2.088104 ATGATAAGGCCTGACGAGGA 57.912 50.000 5.69 0.00 42.93 3.71
368 563 2.519771 TAAGGCCTGACGAGGAACTA 57.480 50.000 5.69 0.00 42.93 2.24
370 565 1.640917 AGGCCTGACGAGGAACTAAA 58.359 50.000 3.11 0.00 42.93 1.85
375 570 3.665190 CCTGACGAGGAACTAAAGCTTT 58.335 45.455 17.30 17.30 42.93 3.51
378 573 4.307432 TGACGAGGAACTAAAGCTTTGAG 58.693 43.478 22.02 15.85 41.55 3.02
382 577 4.511826 CGAGGAACTAAAGCTTTGAGTGTT 59.488 41.667 22.02 18.36 41.55 3.32
385 580 5.007724 AGGAACTAAAGCTTTGAGTGTTTCG 59.992 40.000 22.02 1.76 36.02 3.46
392 587 2.154462 CTTTGAGTGTTTCGGCATCCT 58.846 47.619 0.00 0.00 0.00 3.24
446 641 6.764379 AGTTTCAAAGAAAACTTTGTGGGAA 58.236 32.000 17.96 6.55 44.95 3.97
512 707 9.764363 TGTATGTTAAGATGGTGATGTTCTATC 57.236 33.333 0.00 0.00 0.00 2.08
513 708 9.764363 GTATGTTAAGATGGTGATGTTCTATCA 57.236 33.333 0.00 0.00 0.00 2.15
514 709 8.899427 ATGTTAAGATGGTGATGTTCTATCAG 57.101 34.615 0.00 0.00 0.00 2.90
521 716 4.445453 GGTGATGTTCTATCAGCATGTGA 58.555 43.478 12.62 0.00 43.67 3.58
522 717 4.877823 GGTGATGTTCTATCAGCATGTGAA 59.122 41.667 12.62 0.00 43.67 3.18
523 718 5.355071 GGTGATGTTCTATCAGCATGTGAAA 59.645 40.000 12.62 0.00 43.67 2.69
524 719 6.039047 GGTGATGTTCTATCAGCATGTGAAAT 59.961 38.462 12.62 0.00 43.67 2.17
525 720 7.415989 GGTGATGTTCTATCAGCATGTGAAATT 60.416 37.037 12.62 0.00 43.67 1.82
526 721 7.642978 GTGATGTTCTATCAGCATGTGAAATTC 59.357 37.037 0.00 0.00 39.19 2.17
527 722 6.441093 TGTTCTATCAGCATGTGAAATTCC 57.559 37.500 0.00 0.00 39.19 3.01
528 723 5.357878 TGTTCTATCAGCATGTGAAATTCCC 59.642 40.000 0.00 0.00 39.19 3.97
529 724 5.114764 TCTATCAGCATGTGAAATTCCCA 57.885 39.130 0.00 0.00 39.19 4.37
530 725 5.128205 TCTATCAGCATGTGAAATTCCCAG 58.872 41.667 0.00 0.00 39.19 4.45
531 726 2.449464 TCAGCATGTGAAATTCCCAGG 58.551 47.619 0.00 0.00 37.40 4.45
532 727 2.173519 CAGCATGTGAAATTCCCAGGT 58.826 47.619 0.00 0.00 0.00 4.00
533 728 2.564062 CAGCATGTGAAATTCCCAGGTT 59.436 45.455 0.00 0.00 0.00 3.50
534 729 2.827921 AGCATGTGAAATTCCCAGGTTC 59.172 45.455 0.00 0.00 0.00 3.62
535 730 2.562298 GCATGTGAAATTCCCAGGTTCA 59.438 45.455 0.00 0.00 0.00 3.18
536 731 3.006752 GCATGTGAAATTCCCAGGTTCAA 59.993 43.478 0.00 0.00 33.29 2.69
537 732 4.502950 GCATGTGAAATTCCCAGGTTCAAA 60.503 41.667 0.00 0.00 33.29 2.69
538 733 4.664150 TGTGAAATTCCCAGGTTCAAAC 57.336 40.909 0.00 0.00 33.29 2.93
539 734 4.026744 TGTGAAATTCCCAGGTTCAAACA 58.973 39.130 0.00 0.00 33.29 2.83
540 735 4.142049 TGTGAAATTCCCAGGTTCAAACAC 60.142 41.667 0.00 0.00 33.29 3.32
541 736 4.026744 TGAAATTCCCAGGTTCAAACACA 58.973 39.130 0.00 0.00 0.00 3.72
542 737 4.142049 TGAAATTCCCAGGTTCAAACACAC 60.142 41.667 0.00 0.00 0.00 3.82
543 738 2.818751 TTCCCAGGTTCAAACACACT 57.181 45.000 0.00 0.00 0.00 3.55
544 739 3.935818 TTCCCAGGTTCAAACACACTA 57.064 42.857 0.00 0.00 0.00 2.74
545 740 3.202829 TCCCAGGTTCAAACACACTAC 57.797 47.619 0.00 0.00 0.00 2.73
546 741 2.158726 TCCCAGGTTCAAACACACTACC 60.159 50.000 0.00 0.00 0.00 3.18
547 742 2.422235 CCCAGGTTCAAACACACTACCA 60.422 50.000 0.00 0.00 0.00 3.25
548 743 2.616842 CCAGGTTCAAACACACTACCAC 59.383 50.000 0.00 0.00 0.00 4.16
549 744 3.541632 CAGGTTCAAACACACTACCACT 58.458 45.455 0.00 0.00 0.00 4.00
550 745 3.945285 CAGGTTCAAACACACTACCACTT 59.055 43.478 0.00 0.00 0.00 3.16
551 746 3.945285 AGGTTCAAACACACTACCACTTG 59.055 43.478 0.00 0.00 0.00 3.16
552 747 3.488553 GGTTCAAACACACTACCACTTGC 60.489 47.826 0.00 0.00 0.00 4.01
553 748 1.937223 TCAAACACACTACCACTTGCG 59.063 47.619 0.00 0.00 0.00 4.85
554 749 1.937223 CAAACACACTACCACTTGCGA 59.063 47.619 0.00 0.00 0.00 5.10
555 750 1.865865 AACACACTACCACTTGCGAG 58.134 50.000 0.00 0.00 0.00 5.03
556 751 0.033504 ACACACTACCACTTGCGAGG 59.966 55.000 5.79 0.00 0.00 4.63
557 752 0.033504 CACACTACCACTTGCGAGGT 59.966 55.000 5.79 0.00 41.89 3.85
558 753 1.271379 CACACTACCACTTGCGAGGTA 59.729 52.381 5.79 0.00 39.31 3.08
559 754 1.271656 ACACTACCACTTGCGAGGTAC 59.728 52.381 5.79 0.00 39.31 3.34
560 755 1.271379 CACTACCACTTGCGAGGTACA 59.729 52.381 5.79 0.00 39.31 2.90
561 756 1.965643 ACTACCACTTGCGAGGTACAA 59.034 47.619 5.79 0.00 39.31 2.41
562 757 2.366266 ACTACCACTTGCGAGGTACAAA 59.634 45.455 5.79 0.00 39.31 2.83
563 758 2.561478 ACCACTTGCGAGGTACAAAT 57.439 45.000 5.79 0.00 36.07 2.32
564 759 3.688694 ACCACTTGCGAGGTACAAATA 57.311 42.857 5.79 0.00 36.07 1.40
565 760 3.596214 ACCACTTGCGAGGTACAAATAG 58.404 45.455 5.79 0.00 36.07 1.73
566 761 3.007614 ACCACTTGCGAGGTACAAATAGT 59.992 43.478 5.79 0.00 36.07 2.12
567 762 4.221262 ACCACTTGCGAGGTACAAATAGTA 59.779 41.667 5.79 0.00 36.07 1.82
584 779 9.410556 ACAAATAGTACAAAATCAGCATTGAAC 57.589 29.630 0.00 0.00 36.78 3.18
585 780 8.577939 CAAATAGTACAAAATCAGCATTGAACG 58.422 33.333 0.00 0.00 36.78 3.95
586 781 4.475944 AGTACAAAATCAGCATTGAACGC 58.524 39.130 0.00 0.00 36.78 4.84
587 782 2.676076 ACAAAATCAGCATTGAACGCC 58.324 42.857 0.00 0.00 36.78 5.68
599 794 4.675146 GCATTGAACGCCACTATTCATTGT 60.675 41.667 9.37 0.00 37.99 2.71
627 822 2.475111 TGTTCTTTTCGTAGCTCGCAAG 59.525 45.455 0.00 0.70 39.67 4.01
657 852 5.415221 TGTGTTTGAACTTGGGAATTTCAC 58.585 37.500 0.00 0.00 30.96 3.18
690 885 9.739276 ATAGAACATCACACTCTTAAAATCCAA 57.261 29.630 0.00 0.00 0.00 3.53
734 931 8.768957 TGAAACTTCAAAACATCATTTTCACA 57.231 26.923 0.00 0.00 33.55 3.58
742 939 7.695820 CAAAACATCATTTTCACATGGTTTGT 58.304 30.769 11.74 0.00 44.73 2.83
743 940 7.862512 AAACATCATTTTCACATGGTTTGTT 57.137 28.000 0.00 0.00 36.00 2.83
768 965 5.883328 GGTTTTCACCGAAACTTGATTTC 57.117 39.130 0.00 0.00 42.96 2.17
772 969 4.764679 TCACCGAAACTTGATTTCCATG 57.235 40.909 0.00 0.00 43.40 3.66
773 970 4.393834 TCACCGAAACTTGATTTCCATGA 58.606 39.130 0.00 0.00 43.40 3.07
784 990 0.609957 TTTCCATGAGCCAGCCACAG 60.610 55.000 0.00 0.00 0.00 3.66
798 1004 1.003696 GCCACAGCTCCTTTTCTACCT 59.996 52.381 0.00 0.00 35.50 3.08
799 1005 2.704572 CCACAGCTCCTTTTCTACCTG 58.295 52.381 0.00 0.00 0.00 4.00
800 1006 2.039084 CCACAGCTCCTTTTCTACCTGT 59.961 50.000 0.00 0.00 34.17 4.00
801 1007 3.496870 CCACAGCTCCTTTTCTACCTGTT 60.497 47.826 0.00 0.00 31.75 3.16
802 1008 3.748568 CACAGCTCCTTTTCTACCTGTTC 59.251 47.826 0.00 0.00 31.75 3.18
803 1009 3.648545 ACAGCTCCTTTTCTACCTGTTCT 59.351 43.478 0.00 0.00 30.01 3.01
815 1021 1.741401 CTGTTCTTCGCGGCATCCA 60.741 57.895 6.13 0.00 0.00 3.41
817 1023 2.435938 TTCTTCGCGGCATCCACC 60.436 61.111 6.13 0.00 0.00 4.61
840 1046 0.250295 CAGCTTCGGAAGGGTGTGAA 60.250 55.000 18.73 0.00 0.00 3.18
881 1087 2.319890 ATTTACCACGCGGGCCTAGG 62.320 60.000 12.47 3.67 42.05 3.02
926 1132 1.227527 CAGTCGCAGGGTGTTGTCA 60.228 57.895 0.00 0.00 0.00 3.58
930 1136 2.908073 CGCAGGGTGTTGTCAAGCC 61.908 63.158 0.00 0.00 35.34 4.35
933 1139 0.385390 CAGGGTGTTGTCAAGCCAAC 59.615 55.000 8.01 0.00 43.95 3.77
946 1152 1.228552 GCCAACTTGAGGAAGGGCA 60.229 57.895 0.00 0.00 36.82 5.36
974 1200 1.486726 AGGGGATAAGCGAGGTTCTTG 59.513 52.381 0.00 0.00 0.00 3.02
1258 1519 1.521681 GCTACGGAAGAGGCGCAAT 60.522 57.895 10.83 0.00 0.00 3.56
1444 1719 3.430374 CCAGGTAGACTTCGGTACCAATG 60.430 52.174 13.54 0.00 35.15 2.82
1481 1757 6.486993 TCTGCTGTATCGTCTATGAACATACT 59.513 38.462 0.00 0.00 0.00 2.12
1509 1785 3.750652 ACAAAAAGGCTGGTTGTTGTTTG 59.249 39.130 9.60 0.00 31.52 2.93
1510 1786 3.971245 AAAAGGCTGGTTGTTGTTTGA 57.029 38.095 0.00 0.00 0.00 2.69
1511 1787 4.486125 AAAAGGCTGGTTGTTGTTTGAT 57.514 36.364 0.00 0.00 0.00 2.57
1512 1788 5.606348 AAAAGGCTGGTTGTTGTTTGATA 57.394 34.783 0.00 0.00 0.00 2.15
1569 1847 0.528924 TGCTGAATTGCTGACCATGC 59.471 50.000 0.00 0.00 0.00 4.06
1571 1849 1.203994 GCTGAATTGCTGACCATGCTT 59.796 47.619 0.00 0.00 0.00 3.91
1611 1889 3.809013 GGCCCCGATGGATGGTGT 61.809 66.667 0.00 0.00 35.39 4.16
1657 1935 2.002586 CCTGCAACATCTACGAAGGTG 58.997 52.381 0.00 0.00 39.95 4.00
1658 1936 1.394917 CTGCAACATCTACGAAGGTGC 59.605 52.381 2.48 2.48 37.35 5.01
1659 1937 1.001974 TGCAACATCTACGAAGGTGCT 59.998 47.619 9.98 0.00 37.35 4.40
1675 1953 3.808174 AGGTGCTCGTTTCTTTACAGAAC 59.192 43.478 0.00 0.00 38.86 3.01
1680 1958 5.483185 CTCGTTTCTTTACAGAACGAGTC 57.517 43.478 22.47 0.00 44.74 3.36
1681 1959 4.923893 TCGTTTCTTTACAGAACGAGTCA 58.076 39.130 6.47 0.00 38.86 3.41
1686 1968 6.764877 TTCTTTACAGAACGAGTCATGTTC 57.235 37.500 0.00 3.45 44.72 3.18
1696 1978 5.906113 ACGAGTCATGTTCTAGTCTTCAT 57.094 39.130 0.00 0.00 0.00 2.57
1698 1980 5.416013 ACGAGTCATGTTCTAGTCTTCATCA 59.584 40.000 0.00 0.00 0.00 3.07
1827 2118 1.007502 GTGCCACGCAGCAAATTCA 60.008 52.632 0.96 0.00 46.19 2.57
1914 2673 3.626670 GCTGAGTTGATTTATCTGCTGCT 59.373 43.478 0.00 0.00 35.68 4.24
1981 2740 2.124693 GGACTCTCCTGAGCTCGGG 61.125 68.421 32.64 32.64 43.85 5.14
2001 2760 3.078837 GGAACTTCAAGCGGGTCATAAA 58.921 45.455 0.00 0.00 0.00 1.40
2100 3171 8.533569 TGATTGATTATGGAGTGTAGAGTACA 57.466 34.615 0.00 0.00 36.08 2.90
2215 3287 1.264288 GCTCAGAGTTGGGTTTGTTCG 59.736 52.381 0.00 0.00 0.00 3.95
2224 3296 4.460034 AGTTGGGTTTGTTCGTTGTTTACT 59.540 37.500 0.00 0.00 0.00 2.24
2335 3410 4.214119 GGCCCTTTCTTTTTGATTCTTTGC 59.786 41.667 0.00 0.00 0.00 3.68
2381 3456 3.504906 CACCAGAAAGCACATGAACTCAT 59.495 43.478 0.00 0.00 36.96 2.90
2490 3566 7.338703 ACAAAAGATGCTCTGATGTGTTCATAT 59.661 33.333 0.00 0.00 34.06 1.78
2497 3573 5.291858 GCTCTGATGTGTTCATATTCGTTGA 59.708 40.000 0.00 0.00 34.06 3.18
2500 3576 5.809464 TGATGTGTTCATATTCGTTGATGC 58.191 37.500 0.00 0.00 34.06 3.91
2501 3577 4.257536 TGTGTTCATATTCGTTGATGCG 57.742 40.909 0.00 0.00 0.00 4.73
2502 3578 3.029074 GTGTTCATATTCGTTGATGCGC 58.971 45.455 0.00 0.00 0.00 6.09
2503 3579 2.285544 TGTTCATATTCGTTGATGCGCG 60.286 45.455 0.00 0.00 0.00 6.86
2504 3580 0.232046 TCATATTCGTTGATGCGCGC 59.768 50.000 27.26 27.26 0.00 6.86
2505 3581 0.042274 CATATTCGTTGATGCGCGCA 60.042 50.000 38.27 38.27 0.00 6.09
2508 3584 0.386605 ATTCGTTGATGCGCGCAAAA 60.387 45.000 39.68 30.47 0.00 2.44
2510 3586 2.427765 CGTTGATGCGCGCAAAAGG 61.428 57.895 39.68 31.73 0.00 3.11
2511 3587 2.430582 TTGATGCGCGCAAAAGGC 60.431 55.556 39.68 23.47 39.90 4.35
2512 3588 2.918345 TTGATGCGCGCAAAAGGCT 61.918 52.632 39.68 21.48 41.67 4.58
2513 3589 1.581727 TTGATGCGCGCAAAAGGCTA 61.582 50.000 39.68 17.96 41.67 3.93
2514 3590 1.297893 GATGCGCGCAAAAGGCTAG 60.298 57.895 39.68 0.00 41.67 3.42
2515 3591 1.982073 GATGCGCGCAAAAGGCTAGT 61.982 55.000 39.68 18.85 41.67 2.57
2530 3612 3.260380 AGGCTAGTGTCAGGATATCATGC 59.740 47.826 12.50 8.39 0.00 4.06
2657 3739 4.572909 AGAGGTACACGGGAATTTACAAC 58.427 43.478 0.00 0.00 0.00 3.32
2664 3746 4.202070 ACACGGGAATTTACAACACAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
2729 3811 1.220529 CGTGCCAGCCATACATAGTG 58.779 55.000 0.00 0.00 0.00 2.74
2742 3824 5.070446 CCATACATAGTGCTCCCTCTTAACA 59.930 44.000 0.00 0.00 0.00 2.41
2763 3845 0.748005 GTCATGTGCCGGCCATTAGT 60.748 55.000 26.77 3.36 0.00 2.24
2781 3863 7.507829 CCATTAGTGATTCTTGGATCTCTTCT 58.492 38.462 0.00 0.00 33.38 2.85
3035 4117 6.112058 TCCAAACATATTTTTGCTAATGGGC 58.888 36.000 8.55 0.00 35.48 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 5.236478 CACGTACATCTCTTGGTTTGAGTTT 59.764 40.000 0.00 0.00 33.59 2.66
11 12 4.556233 TCACGTACATCTCTTGGTTTGAG 58.444 43.478 0.00 0.00 0.00 3.02
38 39 4.739716 ACGAAAACATCACAAATTCAGTGC 59.260 37.500 6.20 0.00 36.93 4.40
58 59 2.261345 CCGCCGTTAAATCAAGTACGA 58.739 47.619 0.00 0.00 36.16 3.43
59 60 1.994779 ACCGCCGTTAAATCAAGTACG 59.005 47.619 0.00 0.00 0.00 3.67
171 350 0.396556 AAACAAGGAACCAACCGGCT 60.397 50.000 0.00 0.00 34.57 5.52
181 360 3.716872 AGAGGAGAGGTTCAAACAAGGAA 59.283 43.478 0.00 0.00 0.00 3.36
221 401 3.613432 GCTCCAACTGCAGATTTTGAAGG 60.613 47.826 23.35 4.99 36.69 3.46
236 416 5.675538 AGTAGGTGAAATCATAGCTCCAAC 58.324 41.667 0.00 0.00 0.00 3.77
261 441 0.541863 AGGAGGTGGGTATGCGAAAG 59.458 55.000 0.00 0.00 0.00 2.62
263 443 0.616395 TCAGGAGGTGGGTATGCGAA 60.616 55.000 0.00 0.00 0.00 4.70
264 444 0.398522 ATCAGGAGGTGGGTATGCGA 60.399 55.000 0.00 0.00 0.00 5.10
265 445 0.469917 AATCAGGAGGTGGGTATGCG 59.530 55.000 0.00 0.00 0.00 4.73
276 456 7.713942 TCAAGTCAATACATGATCAATCAGGAG 59.286 37.037 11.27 0.97 40.76 3.69
322 502 1.272781 CAAGAAAGACTAGAGCGGCG 58.727 55.000 0.51 0.51 0.00 6.46
357 552 4.150804 CACTCAAAGCTTTAGTTCCTCGTC 59.849 45.833 12.25 0.00 0.00 4.20
358 553 4.058817 CACTCAAAGCTTTAGTTCCTCGT 58.941 43.478 12.25 0.00 0.00 4.18
359 554 4.058817 ACACTCAAAGCTTTAGTTCCTCG 58.941 43.478 12.25 6.49 0.00 4.63
360 555 6.378710 AAACACTCAAAGCTTTAGTTCCTC 57.621 37.500 12.25 0.00 0.00 3.71
361 556 5.007724 CGAAACACTCAAAGCTTTAGTTCCT 59.992 40.000 12.25 1.40 0.00 3.36
362 557 5.205565 CGAAACACTCAAAGCTTTAGTTCC 58.794 41.667 12.25 2.18 0.00 3.62
363 558 5.205565 CCGAAACACTCAAAGCTTTAGTTC 58.794 41.667 12.25 9.29 0.00 3.01
364 559 4.497507 GCCGAAACACTCAAAGCTTTAGTT 60.498 41.667 12.25 11.30 0.00 2.24
368 563 1.748493 TGCCGAAACACTCAAAGCTTT 59.252 42.857 5.69 5.69 0.00 3.51
370 565 1.537202 GATGCCGAAACACTCAAAGCT 59.463 47.619 0.00 0.00 0.00 3.74
375 570 1.405526 GCTAGGATGCCGAAACACTCA 60.406 52.381 0.00 0.00 0.00 3.41
378 573 2.394604 GGCTAGGATGCCGAAACAC 58.605 57.895 0.00 0.00 43.74 3.32
398 593 6.312141 TGGTTTCCATGTGATATTCTCTCA 57.688 37.500 0.00 0.00 0.00 3.27
482 677 9.906660 GAACATCACCATCTTAACATACAAAAA 57.093 29.630 0.00 0.00 0.00 1.94
484 679 8.862325 AGAACATCACCATCTTAACATACAAA 57.138 30.769 0.00 0.00 0.00 2.83
486 681 9.764363 GATAGAACATCACCATCTTAACATACA 57.236 33.333 0.00 0.00 0.00 2.29
487 682 9.764363 TGATAGAACATCACCATCTTAACATAC 57.236 33.333 0.00 0.00 0.00 2.39
495 690 5.163227 ACATGCTGATAGAACATCACCATCT 60.163 40.000 0.00 0.00 0.00 2.90
512 707 2.173519 ACCTGGGAATTTCACATGCTG 58.826 47.619 0.95 0.00 0.00 4.41
513 708 2.610438 ACCTGGGAATTTCACATGCT 57.390 45.000 0.95 0.00 0.00 3.79
514 709 2.562298 TGAACCTGGGAATTTCACATGC 59.438 45.455 0.95 0.00 0.00 4.06
519 714 4.026744 TGTGTTTGAACCTGGGAATTTCA 58.973 39.130 0.00 0.00 0.00 2.69
521 716 4.030216 AGTGTGTTTGAACCTGGGAATTT 58.970 39.130 0.00 0.00 0.00 1.82
522 717 3.642141 AGTGTGTTTGAACCTGGGAATT 58.358 40.909 0.00 0.00 0.00 2.17
523 718 3.312736 AGTGTGTTTGAACCTGGGAAT 57.687 42.857 0.00 0.00 0.00 3.01
524 719 2.818751 AGTGTGTTTGAACCTGGGAA 57.181 45.000 0.00 0.00 0.00 3.97
525 720 2.158726 GGTAGTGTGTTTGAACCTGGGA 60.159 50.000 0.00 0.00 0.00 4.37
526 721 2.227194 GGTAGTGTGTTTGAACCTGGG 58.773 52.381 0.00 0.00 0.00 4.45
527 722 2.616842 GTGGTAGTGTGTTTGAACCTGG 59.383 50.000 0.00 0.00 0.00 4.45
528 723 3.541632 AGTGGTAGTGTGTTTGAACCTG 58.458 45.455 0.00 0.00 0.00 4.00
529 724 3.926058 AGTGGTAGTGTGTTTGAACCT 57.074 42.857 0.00 0.00 0.00 3.50
530 725 3.488553 GCAAGTGGTAGTGTGTTTGAACC 60.489 47.826 0.00 0.00 0.00 3.62
531 726 3.691498 GCAAGTGGTAGTGTGTTTGAAC 58.309 45.455 0.00 0.00 0.00 3.18
532 727 2.353269 CGCAAGTGGTAGTGTGTTTGAA 59.647 45.455 0.00 0.00 0.00 2.69
533 728 1.937223 CGCAAGTGGTAGTGTGTTTGA 59.063 47.619 0.00 0.00 0.00 2.69
534 729 1.937223 TCGCAAGTGGTAGTGTGTTTG 59.063 47.619 0.00 0.00 39.48 2.93
535 730 2.210116 CTCGCAAGTGGTAGTGTGTTT 58.790 47.619 0.00 0.00 39.48 2.83
536 731 1.540363 CCTCGCAAGTGGTAGTGTGTT 60.540 52.381 0.00 0.00 45.68 3.32
537 732 0.033504 CCTCGCAAGTGGTAGTGTGT 59.966 55.000 0.00 0.00 45.68 3.72
538 733 2.827604 CCTCGCAAGTGGTAGTGTG 58.172 57.895 0.00 0.00 45.68 3.82
546 741 5.697848 GTACTATTTGTACCTCGCAAGTG 57.302 43.478 0.00 0.00 44.21 3.16
558 753 9.410556 GTTCAATGCTGATTTTGTACTATTTGT 57.589 29.630 0.00 0.00 0.00 2.83
559 754 8.577939 CGTTCAATGCTGATTTTGTACTATTTG 58.422 33.333 0.00 0.00 0.00 2.32
560 755 7.273381 GCGTTCAATGCTGATTTTGTACTATTT 59.727 33.333 0.00 0.00 0.00 1.40
561 756 6.747280 GCGTTCAATGCTGATTTTGTACTATT 59.253 34.615 0.00 0.00 0.00 1.73
562 757 6.258160 GCGTTCAATGCTGATTTTGTACTAT 58.742 36.000 0.00 0.00 0.00 2.12
563 758 5.391523 GGCGTTCAATGCTGATTTTGTACTA 60.392 40.000 0.60 0.00 0.00 1.82
564 759 4.475944 GCGTTCAATGCTGATTTTGTACT 58.524 39.130 0.00 0.00 0.00 2.73
565 760 3.608073 GGCGTTCAATGCTGATTTTGTAC 59.392 43.478 0.60 0.00 0.00 2.90
566 761 3.254411 TGGCGTTCAATGCTGATTTTGTA 59.746 39.130 0.60 0.00 0.00 2.41
567 762 2.035704 TGGCGTTCAATGCTGATTTTGT 59.964 40.909 0.60 0.00 0.00 2.83
568 763 2.409378 GTGGCGTTCAATGCTGATTTTG 59.591 45.455 0.60 0.00 0.00 2.44
569 764 2.297033 AGTGGCGTTCAATGCTGATTTT 59.703 40.909 0.60 0.00 0.00 1.82
570 765 1.888512 AGTGGCGTTCAATGCTGATTT 59.111 42.857 0.60 0.00 0.00 2.17
571 766 1.538047 AGTGGCGTTCAATGCTGATT 58.462 45.000 0.60 0.00 0.00 2.57
572 767 2.401583 TAGTGGCGTTCAATGCTGAT 57.598 45.000 0.60 0.00 0.00 2.90
573 768 2.401583 ATAGTGGCGTTCAATGCTGA 57.598 45.000 0.60 0.00 0.00 4.26
574 769 2.419673 TGAATAGTGGCGTTCAATGCTG 59.580 45.455 0.60 0.00 31.85 4.41
575 770 2.710377 TGAATAGTGGCGTTCAATGCT 58.290 42.857 0.60 0.00 31.85 3.79
576 771 3.698029 ATGAATAGTGGCGTTCAATGC 57.302 42.857 0.00 0.00 37.82 3.56
577 772 4.985413 ACAATGAATAGTGGCGTTCAATG 58.015 39.130 0.00 0.00 39.78 2.82
578 773 5.182950 TCAACAATGAATAGTGGCGTTCAAT 59.817 36.000 0.00 0.00 37.82 2.57
579 774 4.517075 TCAACAATGAATAGTGGCGTTCAA 59.483 37.500 0.00 0.00 37.82 2.69
580 775 4.068599 TCAACAATGAATAGTGGCGTTCA 58.931 39.130 0.00 0.00 38.57 3.18
581 776 4.678509 TCAACAATGAATAGTGGCGTTC 57.321 40.909 0.00 0.00 30.99 3.95
599 794 6.133392 CGAGCTACGAAAAGAACAAATTCAA 58.867 36.000 0.00 0.00 45.77 2.69
607 802 2.475487 ACTTGCGAGCTACGAAAAGAAC 59.525 45.455 18.70 1.79 45.77 3.01
616 811 2.348666 CACATTACCACTTGCGAGCTAC 59.651 50.000 0.00 0.00 0.00 3.58
627 822 4.339814 TCCCAAGTTCAAACACATTACCAC 59.660 41.667 0.00 0.00 0.00 4.16
657 852 5.358090 AGAGTGTGATGTTCTATCAGCATG 58.642 41.667 0.00 0.00 36.17 4.06
713 909 7.274447 ACCATGTGAAAATGATGTTTTGAAGT 58.726 30.769 0.00 0.00 0.00 3.01
734 931 3.787785 GGTGAAAACCGAAACAAACCAT 58.212 40.909 0.00 0.00 0.00 3.55
768 965 3.138798 GCTGTGGCTGGCTCATGG 61.139 66.667 6.43 0.00 35.22 3.66
784 990 3.680458 CGAAGAACAGGTAGAAAAGGAGC 59.320 47.826 0.00 0.00 0.00 4.70
787 993 2.412089 CGCGAAGAACAGGTAGAAAAGG 59.588 50.000 0.00 0.00 0.00 3.11
790 996 1.938016 GCCGCGAAGAACAGGTAGAAA 60.938 52.381 8.23 0.00 0.00 2.52
795 1001 1.741770 GATGCCGCGAAGAACAGGT 60.742 57.895 8.23 0.00 0.00 4.00
798 1004 2.032634 GTGGATGCCGCGAAGAACA 61.033 57.895 8.23 0.00 0.00 3.18
799 1005 2.750888 GGTGGATGCCGCGAAGAAC 61.751 63.158 8.23 0.00 34.37 3.01
800 1006 2.435938 GGTGGATGCCGCGAAGAA 60.436 61.111 8.23 0.00 34.37 2.52
801 1007 2.463589 AAAGGTGGATGCCGCGAAGA 62.464 55.000 8.23 0.00 34.37 2.87
802 1008 1.982073 GAAAGGTGGATGCCGCGAAG 61.982 60.000 8.23 0.00 34.37 3.79
803 1009 2.033448 AAAGGTGGATGCCGCGAA 59.967 55.556 8.23 0.00 34.37 4.70
817 1023 1.160137 CACCCTTCCGAAGCTGAAAG 58.840 55.000 2.27 0.00 0.00 2.62
840 1046 1.070758 CTATACGTGGCCCAGCTTGAT 59.929 52.381 0.00 0.00 0.00 2.57
926 1132 0.540597 GCCCTTCCTCAAGTTGGCTT 60.541 55.000 2.34 0.00 35.24 4.35
930 1136 1.246737 GCCTGCCCTTCCTCAAGTTG 61.247 60.000 0.00 0.00 0.00 3.16
933 1139 1.378250 CTGCCTGCCCTTCCTCAAG 60.378 63.158 0.00 0.00 0.00 3.02
937 1143 4.682714 TCCCTGCCTGCCCTTCCT 62.683 66.667 0.00 0.00 0.00 3.36
938 1144 4.120755 CTCCCTGCCTGCCCTTCC 62.121 72.222 0.00 0.00 0.00 3.46
939 1145 4.120755 CCTCCCTGCCTGCCCTTC 62.121 72.222 0.00 0.00 0.00 3.46
946 1152 1.772156 GCTTATCCCCTCCCTGCCT 60.772 63.158 0.00 0.00 0.00 4.75
974 1200 1.620819 TCCTCTCCTCTGCTTCAACAC 59.379 52.381 0.00 0.00 0.00 3.32
1093 1330 3.941081 TCCTGATGAGGAGGACGC 58.059 61.111 0.00 0.00 44.13 5.19
1239 1500 2.925162 ATTGCGCCTCTTCCGTAGCC 62.925 60.000 4.18 0.00 0.00 3.93
1242 1503 1.153449 CCATTGCGCCTCTTCCGTA 60.153 57.895 4.18 0.00 0.00 4.02
1243 1504 2.436646 CCATTGCGCCTCTTCCGT 60.437 61.111 4.18 0.00 0.00 4.69
1432 1703 2.437002 GCCGCCATTGGTACCGAA 60.437 61.111 5.77 2.48 0.00 4.30
1435 1706 3.518068 GCTGCCGCCATTGGTACC 61.518 66.667 4.43 4.43 0.00 3.34
1481 1757 4.528920 ACAACCAGCCTTTTTGTAGTACA 58.471 39.130 0.00 0.00 31.65 2.90
1495 1771 6.985188 TCTATCTATCAAACAACAACCAGC 57.015 37.500 0.00 0.00 0.00 4.85
1509 1785 8.559536 TGAACCGAAATTTTGCATCTATCTATC 58.440 33.333 0.00 0.00 0.00 2.08
1510 1786 8.450578 TGAACCGAAATTTTGCATCTATCTAT 57.549 30.769 0.00 0.00 0.00 1.98
1511 1787 7.857734 TGAACCGAAATTTTGCATCTATCTA 57.142 32.000 0.00 0.00 0.00 1.98
1512 1788 6.757897 TGAACCGAAATTTTGCATCTATCT 57.242 33.333 0.00 0.00 0.00 1.98
1569 1847 1.516161 TGCTCTTGTACAGCTGCAAG 58.484 50.000 21.52 21.52 42.32 4.01
1571 1849 1.002315 TCATGCTCTTGTACAGCTGCA 59.998 47.619 15.27 16.87 37.79 4.41
1611 1889 4.370917 GGTTGGACTTGTCGTAGTTGTTA 58.629 43.478 0.00 0.00 0.00 2.41
1657 1935 3.734735 ACTCGTTCTGTAAAGAAACGAGC 59.265 43.478 28.53 8.20 43.93 5.03
1658 1936 4.974275 TGACTCGTTCTGTAAAGAAACGAG 59.026 41.667 27.76 27.76 44.63 4.18
1659 1937 4.923893 TGACTCGTTCTGTAAAGAAACGA 58.076 39.130 15.13 15.13 33.73 3.85
1662 1940 7.173863 GAACATGACTCGTTCTGTAAAGAAA 57.826 36.000 0.00 0.00 39.72 2.52
1675 1953 5.741510 GTGATGAAGACTAGAACATGACTCG 59.258 44.000 0.00 0.00 0.00 4.18
1680 1958 5.063186 GCACTGTGATGAAGACTAGAACATG 59.937 44.000 12.86 0.00 0.00 3.21
1681 1959 5.174395 GCACTGTGATGAAGACTAGAACAT 58.826 41.667 12.86 0.00 0.00 2.71
1686 1968 3.917988 TGTGCACTGTGATGAAGACTAG 58.082 45.455 19.41 0.00 0.00 2.57
1696 1978 3.192541 ACTTACACATGTGCACTGTGA 57.807 42.857 35.26 21.90 45.44 3.58
1698 1980 4.511454 CAGTTACTTACACATGTGCACTGT 59.489 41.667 25.68 19.41 30.63 3.55
1748 2036 2.332063 AGAATGGCCGGTCTACAATG 57.668 50.000 7.97 0.00 0.00 2.82
1749 2037 2.505819 AGAAGAATGGCCGGTCTACAAT 59.494 45.455 7.97 0.00 0.00 2.71
1790 2081 2.096713 CACGCCAAAGAACTCTTCGAAG 60.097 50.000 19.35 19.35 34.61 3.79
1852 2584 2.418628 ACACGAACAACAACACAAGAGG 59.581 45.455 0.00 0.00 0.00 3.69
1978 2737 2.032071 ACCCGCTTGAAGTTCCCG 59.968 61.111 0.00 0.84 0.00 5.14
1981 2740 3.127030 CCTTTATGACCCGCTTGAAGTTC 59.873 47.826 0.00 0.00 0.00 3.01
2001 2760 5.627968 GCTTCATGCTTACTACTTTCCTCCT 60.628 44.000 0.00 0.00 38.95 3.69
2100 3171 1.344438 TCAACTGCTTCGGTGAGTGAT 59.656 47.619 0.00 0.00 0.00 3.06
2126 3197 8.380099 AGAATTAGGTACCAGTATTTGTGTTCA 58.620 33.333 15.94 0.00 0.00 3.18
2490 3566 0.996229 CTTTTGCGCGCATCAACGAA 60.996 50.000 36.83 22.26 34.06 3.85
2503 3579 2.185004 TCCTGACACTAGCCTTTTGC 57.815 50.000 0.00 0.00 41.71 3.68
2504 3580 5.674525 TGATATCCTGACACTAGCCTTTTG 58.325 41.667 0.00 0.00 0.00 2.44
2505 3581 5.957771 TGATATCCTGACACTAGCCTTTT 57.042 39.130 0.00 0.00 0.00 2.27
2508 3584 3.260380 GCATGATATCCTGACACTAGCCT 59.740 47.826 11.73 0.00 0.00 4.58
2510 3586 4.533919 AGCATGATATCCTGACACTAGC 57.466 45.455 11.73 0.00 0.00 3.42
2511 3587 9.499479 AAAATTAGCATGATATCCTGACACTAG 57.501 33.333 11.73 0.00 0.00 2.57
2512 3588 9.851686 AAAAATTAGCATGATATCCTGACACTA 57.148 29.630 11.73 1.95 0.00 2.74
2513 3589 8.757982 AAAAATTAGCATGATATCCTGACACT 57.242 30.769 11.73 2.80 0.00 3.55
2657 3739 9.831737 CTGAGAAAAATAACTGATACCTTTGTG 57.168 33.333 0.00 0.00 0.00 3.33
2729 3811 3.624861 CACATGACATGTTAAGAGGGAGC 59.375 47.826 18.52 0.00 42.70 4.70
2742 3824 0.106769 TAATGGCCGGCACATGACAT 60.107 50.000 30.85 18.19 29.04 3.06
2763 3845 7.398618 AGAACACTAGAAGAGATCCAAGAATCA 59.601 37.037 0.00 0.00 0.00 2.57
2781 3863 5.512576 GCCAGAAACTAAAGGGAGAACACTA 60.513 44.000 0.00 0.00 0.00 2.74
3035 4117 6.533012 CCACTCATGTGATAGCCGAATAATAG 59.467 42.308 0.94 0.00 46.55 1.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.