Multiple sequence alignment - TraesCS6B01G362400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G362400 chr6B 100.000 7275 0 0 1 7275 633909122 633916396 0.000000e+00 13435.0
1 TraesCS6B01G362400 chr6B 90.751 173 14 2 481 652 83138548 83138377 5.680000e-56 230.0
2 TraesCS6B01G362400 chr6B 89.941 169 12 5 479 645 132353581 132353416 5.720000e-51 213.0
3 TraesCS6B01G362400 chr6B 84.034 119 4 6 1526 1629 39203609 39203491 4.640000e-17 100.0
4 TraesCS6B01G362400 chr6D 94.698 4960 191 31 2357 7270 420744359 420749292 0.000000e+00 7637.0
5 TraesCS6B01G362400 chr6D 84.492 748 55 31 802 1528 420742746 420743453 0.000000e+00 682.0
6 TraesCS6B01G362400 chr6D 88.285 478 44 7 11 487 420741970 420742436 4.930000e-156 562.0
7 TraesCS6B01G362400 chr6D 82.933 416 33 18 1901 2310 420743858 420744241 2.510000e-89 340.0
8 TraesCS6B01G362400 chr6A 93.947 2544 113 18 4738 7270 563709091 563711604 0.000000e+00 3807.0
9 TraesCS6B01G362400 chr6A 92.386 2640 109 29 2163 4758 563706143 563708734 0.000000e+00 3677.0
10 TraesCS6B01G362400 chr6A 83.150 635 46 32 866 1482 563700811 563701402 2.330000e-144 523.0
11 TraesCS6B01G362400 chr6A 86.501 363 45 4 1 360 563699683 563700044 5.290000e-106 396.0
12 TraesCS6B01G362400 chr6A 92.357 157 10 2 1830 1986 563705714 563705868 9.500000e-54 222.0
13 TraesCS6B01G362400 chr6A 90.909 143 13 0 345 487 563700061 563700203 7.450000e-45 193.0
14 TraesCS6B01G362400 chr6A 89.256 121 2 2 2009 2129 563705929 563706038 2.740000e-29 141.0
15 TraesCS6B01G362400 chr6A 98.649 74 1 0 771 844 563700573 563700646 1.650000e-26 132.0
16 TraesCS6B01G362400 chr6A 95.833 72 3 0 1695 1766 563701564 563701635 4.610000e-22 117.0
17 TraesCS6B01G362400 chr6A 84.034 119 15 1 3735 3853 426639405 426639519 2.150000e-20 111.0
18 TraesCS6B01G362400 chr6A 98.333 60 1 0 1522 1581 349574924 349574983 9.980000e-19 106.0
19 TraesCS6B01G362400 chr6A 84.746 118 2 5 1526 1627 543531427 543531544 3.590000e-18 104.0
20 TraesCS6B01G362400 chr6A 84.167 120 3 5 1527 1630 543531543 543531424 1.290000e-17 102.0
21 TraesCS6B01G362400 chr2B 89.628 1880 129 31 4345 6212 15780905 15782730 0.000000e+00 2331.0
22 TraesCS6B01G362400 chr2B 89.733 1870 126 31 4355 6212 15853371 15855186 0.000000e+00 2329.0
23 TraesCS6B01G362400 chr2B 92.508 1188 63 12 5031 6212 15717473 15718640 0.000000e+00 1677.0
24 TraesCS6B01G362400 chr2B 89.660 764 43 25 6521 7270 15782774 15783515 0.000000e+00 941.0
25 TraesCS6B01G362400 chr2B 89.398 764 45 25 6521 7270 15855230 15855971 0.000000e+00 929.0
26 TraesCS6B01G362400 chr2B 89.272 755 48 19 6521 7270 15718684 15719410 0.000000e+00 915.0
27 TraesCS6B01G362400 chr2B 90.154 518 38 9 5031 5542 15953710 15954220 0.000000e+00 662.0
28 TraesCS6B01G362400 chr2B 85.426 645 55 17 4345 4983 15716858 15717469 1.030000e-177 634.0
29 TraesCS6B01G362400 chr2B 85.449 646 53 19 4345 4983 15952612 15953223 1.030000e-177 634.0
30 TraesCS6B01G362400 chr2B 88.623 167 17 2 483 648 693371163 693371328 1.240000e-47 202.0
31 TraesCS6B01G362400 chr2B 85.849 106 15 0 3751 3856 456031266 456031371 5.970000e-21 113.0
32 TraesCS6B01G362400 chr2B 91.304 46 4 0 3819 3864 493712430 493712385 6.090000e-06 63.9
33 TraesCS6B01G362400 chr7A 88.759 1877 132 37 4345 6212 11675089 11676895 0.000000e+00 2224.0
34 TraesCS6B01G362400 chr7A 89.791 764 42 24 6521 7270 11676939 11677680 0.000000e+00 946.0
35 TraesCS6B01G362400 chr7A 98.361 61 0 1 1521 1581 63116802 63116861 9.980000e-19 106.0
36 TraesCS6B01G362400 chr7A 92.754 69 4 1 1513 1581 729886484 729886551 1.670000e-16 99.0
37 TraesCS6B01G362400 chr7A 91.379 58 3 2 1573 1629 664847637 664847693 2.180000e-10 78.7
38 TraesCS6B01G362400 chr7A 96.774 31 1 0 3782 3812 727434624 727434654 1.300000e-02 52.8
39 TraesCS6B01G362400 chrUn 92.508 1188 63 12 5031 6212 333314434 333313267 0.000000e+00 1677.0
40 TraesCS6B01G362400 chrUn 89.362 752 47 19 6524 7270 333313220 333312497 0.000000e+00 915.0
41 TraesCS6B01G362400 chrUn 90.154 518 38 9 5031 5542 437075569 437076079 0.000000e+00 662.0
42 TraesCS6B01G362400 chrUn 85.271 645 56 17 4345 4983 375150997 375151608 4.790000e-176 628.0
43 TraesCS6B01G362400 chrUn 85.354 635 54 17 4355 4983 437074964 437075565 8.020000e-174 621.0
44 TraesCS6B01G362400 chrUn 91.667 192 5 5 6798 6983 124974422 124974236 9.370000e-64 255.0
45 TraesCS6B01G362400 chrUn 91.146 192 6 5 6798 6983 259181472 259181286 4.360000e-62 250.0
46 TraesCS6B01G362400 chrUn 93.814 97 6 0 7179 7275 259180355 259180259 5.880000e-31 147.0
47 TraesCS6B01G362400 chr4D 89.992 1239 96 17 4345 5566 508462611 508463838 0.000000e+00 1576.0
48 TraesCS6B01G362400 chr4D 95.018 562 25 1 5603 6164 508463829 508464387 0.000000e+00 880.0
49 TraesCS6B01G362400 chr4D 87.660 235 27 2 6589 6822 366044834 366045067 9.300000e-69 272.0
50 TraesCS6B01G362400 chr4D 93.889 180 9 1 6174 6353 508471825 508472002 3.340000e-68 270.0
51 TraesCS6B01G362400 chr4D 90.164 61 4 2 1586 1644 295430947 295430887 2.180000e-10 78.7
52 TraesCS6B01G362400 chr3B 85.225 467 30 4 6815 7270 745704854 745704416 1.860000e-120 444.0
53 TraesCS6B01G362400 chr3B 90.533 169 12 4 478 644 761137194 761137360 3.420000e-53 220.0
54 TraesCS6B01G362400 chr3B 93.939 66 2 1 1527 1590 346682598 346682663 1.670000e-16 99.0
55 TraesCS6B01G362400 chr3A 87.234 235 28 2 6589 6822 361577562 361577329 4.330000e-67 267.0
56 TraesCS6B01G362400 chr3A 90.654 107 5 3 1526 1631 509858973 509858871 3.540000e-28 137.0
57 TraesCS6B01G362400 chr3A 89.286 112 4 6 1517 1626 509858867 509858972 4.580000e-27 134.0
58 TraesCS6B01G362400 chr3A 84.615 104 14 2 3735 3836 96245204 96245101 1.290000e-17 102.0
59 TraesCS6B01G362400 chr2A 86.864 236 28 3 6589 6822 381733014 381732780 2.010000e-65 261.0
60 TraesCS6B01G362400 chr2A 89.189 74 8 0 3735 3808 4094963 4095036 7.770000e-15 93.5
61 TraesCS6B01G362400 chr2A 82.075 106 17 2 3736 3841 770016890 770016787 1.010000e-13 89.8
62 TraesCS6B01G362400 chr4A 90.798 163 14 1 483 645 637535029 637535190 4.420000e-52 217.0
63 TraesCS6B01G362400 chr4A 85.915 71 6 4 1562 1629 691132071 691132002 1.010000e-08 73.1
64 TraesCS6B01G362400 chr2D 89.655 174 12 5 474 645 419068116 419068285 4.420000e-52 217.0
65 TraesCS6B01G362400 chr5A 89.412 170 14 4 478 645 569179322 569179155 2.060000e-50 211.0
66 TraesCS6B01G362400 chr5A 88.785 107 6 5 1526 1626 471411500 471411606 7.660000e-25 126.0
67 TraesCS6B01G362400 chr5A 88.679 106 6 2 1527 1626 471411606 471411501 2.760000e-24 124.0
68 TraesCS6B01G362400 chr5A 82.883 111 19 0 3750 3860 680280544 680280434 4.640000e-17 100.0
69 TraesCS6B01G362400 chr3D 90.244 164 12 3 483 645 200383818 200383978 2.060000e-50 211.0
70 TraesCS6B01G362400 chr3D 83.654 104 15 2 3735 3836 81717602 81717499 6.010000e-16 97.1
71 TraesCS6B01G362400 chr1A 90.244 164 13 3 483 645 139560218 139560057 2.060000e-50 211.0
72 TraesCS6B01G362400 chr5D 86.607 112 7 7 1526 1629 478223398 478223287 4.610000e-22 117.0
73 TraesCS6B01G362400 chr5D 95.161 62 3 0 1247 1308 398094569 398094630 1.670000e-16 99.0
74 TraesCS6B01G362400 chr5D 94.737 38 2 0 161 198 410851084 410851047 7.880000e-05 60.2
75 TraesCS6B01G362400 chr5B 86.301 73 9 1 1562 1633 375641522 375641450 2.180000e-10 78.7
76 TraesCS6B01G362400 chr7D 90.741 54 5 0 3801 3854 26004189 26004242 1.010000e-08 73.1
77 TraesCS6B01G362400 chr1B 100.000 29 0 0 3825 3853 481320649 481320677 4.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G362400 chr6B 633909122 633916396 7274 False 13435.000000 13435 100.000000 1 7275 1 chr6B.!!$F1 7274
1 TraesCS6B01G362400 chr6D 420741970 420749292 7322 False 2305.250000 7637 87.602000 11 7270 4 chr6D.!!$F1 7259
2 TraesCS6B01G362400 chr6A 563705714 563711604 5890 False 1961.750000 3807 91.986500 1830 7270 4 chr6A.!!$F5 5440
3 TraesCS6B01G362400 chr6A 563699683 563701635 1952 False 272.200000 523 91.008400 1 1766 5 chr6A.!!$F4 1765
4 TraesCS6B01G362400 chr2B 15780905 15783515 2610 False 1636.000000 2331 89.644000 4345 7270 2 chr2B.!!$F4 2925
5 TraesCS6B01G362400 chr2B 15853371 15855971 2600 False 1629.000000 2329 89.565500 4355 7270 2 chr2B.!!$F5 2915
6 TraesCS6B01G362400 chr2B 15716858 15719410 2552 False 1075.333333 1677 89.068667 4345 7270 3 chr2B.!!$F3 2925
7 TraesCS6B01G362400 chr2B 15952612 15954220 1608 False 648.000000 662 87.801500 4345 5542 2 chr2B.!!$F6 1197
8 TraesCS6B01G362400 chr7A 11675089 11677680 2591 False 1585.000000 2224 89.275000 4345 7270 2 chr7A.!!$F5 2925
9 TraesCS6B01G362400 chrUn 333312497 333314434 1937 True 1296.000000 1677 90.935000 5031 7270 2 chrUn.!!$R3 2239
10 TraesCS6B01G362400 chrUn 437074964 437076079 1115 False 641.500000 662 87.754000 4355 5542 2 chrUn.!!$F2 1187
11 TraesCS6B01G362400 chrUn 375150997 375151608 611 False 628.000000 628 85.271000 4345 4983 1 chrUn.!!$F1 638
12 TraesCS6B01G362400 chr4D 508462611 508464387 1776 False 1228.000000 1576 92.505000 4345 6164 2 chr4D.!!$F3 1819

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
35 37 0.036010 AGGCGGATGTTTGGACTCTG 60.036 55.0 0.00 0.00 0.00 3.35 F
1342 1838 0.032678 CCGCTCGCTCCATGTCTTAT 59.967 55.0 0.00 0.00 0.00 1.73 F
1494 1990 0.107945 GTTGGTTTGGCTGGCACAAA 60.108 50.0 2.29 0.00 38.70 2.83 F
2408 3275 0.034670 GCTGGGGCTGATGAGAAAGT 60.035 55.0 0.00 0.00 35.22 2.66 F
2577 3448 0.261402 TGGCCCCATCACCAATAAGG 59.739 55.0 0.00 0.00 45.67 2.69 F
3762 4648 0.599558 CCGTCCCGAACTACTTGTCA 59.400 55.0 0.00 0.00 0.00 3.58 F
4193 5084 1.635844 TTCTTATGCAGGCGTACGTG 58.364 50.0 17.90 9.35 34.75 4.49 F
4967 6260 0.181587 TCGGGAAGAAACTTGCCACA 59.818 50.0 18.80 5.12 0.00 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 2338 0.035056 CTCGCCCATTTTCCCTCAGT 60.035 55.000 0.00 0.00 0.00 3.41 R
2376 3243 0.259647 CCCCAGCCATGATGGAGAAA 59.740 55.000 17.22 0.00 42.34 2.52 R
2558 3429 0.261402 CCTTATTGGTGATGGGGCCA 59.739 55.000 4.39 0.00 0.00 5.36 R
3621 4505 0.109342 AGGAGGAACACACAAGGCAG 59.891 55.000 0.00 0.00 0.00 4.85 R
3828 4719 0.754472 CCTCCGCCCCGAATTACTTA 59.246 55.000 0.00 0.00 0.00 2.24 R
4602 5516 1.019673 ATTGATACAGCCAGCAAGCG 58.980 50.000 0.00 0.00 38.01 4.68 R
5881 7621 1.002430 TGCTTACCTGCAGAGTTCCAG 59.998 52.381 17.39 9.29 38.12 3.86 R
6514 8254 0.042274 CATATTCGTTGATGCGCGCA 60.042 50.000 38.27 38.27 0.00 6.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 22 1.543802 TGGCTTTTTATTGGACAGGCG 59.456 47.619 0.00 0.00 32.81 5.52
26 28 2.799126 TTATTGGACAGGCGGATGTT 57.201 45.000 0.00 0.00 32.25 2.71
27 29 2.799126 TATTGGACAGGCGGATGTTT 57.201 45.000 0.00 0.00 32.25 2.83
28 30 1.176527 ATTGGACAGGCGGATGTTTG 58.823 50.000 0.00 0.00 32.25 2.93
35 37 0.036010 AGGCGGATGTTTGGACTCTG 60.036 55.000 0.00 0.00 0.00 3.35
58 60 3.004862 CAAAGCCCATTGATTTGCTTCC 58.995 45.455 0.00 0.00 42.85 3.46
65 67 5.739935 GCCCATTGATTTGCTTCCGATTTAT 60.740 40.000 0.00 0.00 0.00 1.40
71 73 4.712122 TTTGCTTCCGATTTATGGGAAC 57.288 40.909 2.49 2.12 39.34 3.62
76 78 3.447918 TCCGATTTATGGGAACTCGAC 57.552 47.619 0.00 0.00 31.35 4.20
89 91 4.394078 TCGACTTCGGACACGCGG 62.394 66.667 12.47 1.27 40.69 6.46
104 106 4.052229 CGGAGGTGTTCGCGGACT 62.052 66.667 20.15 0.00 0.00 3.85
116 118 1.887242 GCGGACTGATGCGGCAATA 60.887 57.895 6.82 0.00 40.55 1.90
139 141 4.866921 TGTTGGATATCTTACATCGTCCG 58.133 43.478 2.05 0.00 0.00 4.79
140 142 4.581409 TGTTGGATATCTTACATCGTCCGA 59.419 41.667 2.05 0.00 0.00 4.55
181 183 0.748005 CGGGCGTTTTGAGGATCCAT 60.748 55.000 15.82 0.00 0.00 3.41
231 233 0.393077 CGCCGATCTAATCTTGGGGT 59.607 55.000 0.00 0.00 0.00 4.95
261 263 2.359900 CACCAAGAAGATTAGGCGCTT 58.640 47.619 7.64 0.52 0.00 4.68
262 264 2.096496 CACCAAGAAGATTAGGCGCTTG 59.904 50.000 7.64 0.00 36.58 4.01
344 347 5.351233 TGTCGTCAAATACACATTGGTTC 57.649 39.130 0.00 0.00 0.00 3.62
347 382 6.021596 GTCGTCAAATACACATTGGTTCATC 58.978 40.000 0.00 0.00 0.00 2.92
363 398 5.365025 TGGTTCATCCTTTTCATTTTCACCA 59.635 36.000 0.00 0.00 37.07 4.17
371 406 5.179929 CCTTTTCATTTTCACCAATTGGCTC 59.820 40.000 24.79 0.00 39.32 4.70
381 416 1.734465 CCAATTGGCTCTCTTGTCGTC 59.266 52.381 12.53 0.00 0.00 4.20
398 433 5.475719 TGTCGTCAGGTATTTGAAACTAGG 58.524 41.667 0.00 0.00 0.00 3.02
403 438 6.571731 CGTCAGGTATTTGAAACTAGGTCTCA 60.572 42.308 0.00 0.00 0.00 3.27
487 522 6.817184 TGCCAGGTTATTAGTCATCTACTTC 58.183 40.000 0.00 0.00 39.80 3.01
489 524 6.042208 GCCAGGTTATTAGTCATCTACTTCCT 59.958 42.308 0.00 0.00 39.80 3.36
490 525 7.662897 CCAGGTTATTAGTCATCTACTTCCTC 58.337 42.308 0.00 0.00 39.80 3.71
491 526 7.507616 CCAGGTTATTAGTCATCTACTTCCTCT 59.492 40.741 0.00 0.00 39.80 3.69
492 527 8.356657 CAGGTTATTAGTCATCTACTTCCTCTG 58.643 40.741 0.00 0.00 39.80 3.35
494 529 8.697292 GGTTATTAGTCATCTACTTCCTCTGTT 58.303 37.037 0.00 0.00 39.80 3.16
495 530 9.738832 GTTATTAGTCATCTACTTCCTCTGTTC 57.261 37.037 0.00 0.00 39.80 3.18
496 531 6.777213 TTAGTCATCTACTTCCTCTGTTCC 57.223 41.667 0.00 0.00 39.80 3.62
497 532 4.941713 AGTCATCTACTTCCTCTGTTCCT 58.058 43.478 0.00 0.00 33.35 3.36
499 534 6.494952 AGTCATCTACTTCCTCTGTTCCTAA 58.505 40.000 0.00 0.00 33.35 2.69
500 535 6.954684 AGTCATCTACTTCCTCTGTTCCTAAA 59.045 38.462 0.00 0.00 33.35 1.85
501 536 7.621683 AGTCATCTACTTCCTCTGTTCCTAAAT 59.378 37.037 0.00 0.00 33.35 1.40
509 544 9.495382 ACTTCCTCTGTTCCTAAATATAAGTCT 57.505 33.333 0.00 0.00 0.00 3.24
531 566 9.838339 AGTCTTTTTAGAGATTTCAACAAGAGA 57.162 29.630 0.00 0.00 0.00 3.10
532 567 9.871299 GTCTTTTTAGAGATTTCAACAAGAGAC 57.129 33.333 0.00 0.00 0.00 3.36
533 568 9.838339 TCTTTTTAGAGATTTCAACAAGAGACT 57.162 29.630 0.00 0.00 0.00 3.24
544 579 8.630278 TTTCAACAAGAGACTATATACGAAGC 57.370 34.615 0.00 0.00 0.00 3.86
545 580 7.329588 TCAACAAGAGACTATATACGAAGCA 57.670 36.000 0.00 0.00 0.00 3.91
546 581 7.768240 TCAACAAGAGACTATATACGAAGCAA 58.232 34.615 0.00 0.00 0.00 3.91
547 582 8.248253 TCAACAAGAGACTATATACGAAGCAAA 58.752 33.333 0.00 0.00 0.00 3.68
548 583 8.869897 CAACAAGAGACTATATACGAAGCAAAA 58.130 33.333 0.00 0.00 0.00 2.44
549 584 9.601217 AACAAGAGACTATATACGAAGCAAAAT 57.399 29.630 0.00 0.00 0.00 1.82
550 585 9.035607 ACAAGAGACTATATACGAAGCAAAATG 57.964 33.333 0.00 0.00 0.00 2.32
551 586 9.249457 CAAGAGACTATATACGAAGCAAAATGA 57.751 33.333 0.00 0.00 0.00 2.57
552 587 8.804688 AGAGACTATATACGAAGCAAAATGAC 57.195 34.615 0.00 0.00 0.00 3.06
553 588 8.634444 AGAGACTATATACGAAGCAAAATGACT 58.366 33.333 0.00 0.00 0.00 3.41
554 589 8.581057 AGACTATATACGAAGCAAAATGACTG 57.419 34.615 0.00 0.00 0.00 3.51
555 590 8.414003 AGACTATATACGAAGCAAAATGACTGA 58.586 33.333 0.00 0.00 0.00 3.41
556 591 8.942338 ACTATATACGAAGCAAAATGACTGAA 57.058 30.769 0.00 0.00 0.00 3.02
557 592 9.547753 ACTATATACGAAGCAAAATGACTGAAT 57.452 29.630 0.00 0.00 0.00 2.57
559 594 6.992063 ATACGAAGCAAAATGACTGAATCT 57.008 33.333 0.00 0.00 0.00 2.40
560 595 9.764363 ATATACGAAGCAAAATGACTGAATCTA 57.236 29.630 0.00 0.00 0.00 1.98
561 596 6.170675 ACGAAGCAAAATGACTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
562 597 5.700832 ACGAAGCAAAATGACTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
563 598 6.017933 CGAAGCAAAATGACTGAATCTACAC 58.982 40.000 0.00 0.00 0.00 2.90
564 599 6.128445 CGAAGCAAAATGACTGAATCTACACT 60.128 38.462 0.00 0.00 0.00 3.55
565 600 6.734104 AGCAAAATGACTGAATCTACACTC 57.266 37.500 0.00 0.00 0.00 3.51
566 601 6.471146 AGCAAAATGACTGAATCTACACTCT 58.529 36.000 0.00 0.00 0.00 3.24
567 602 7.615403 AGCAAAATGACTGAATCTACACTCTA 58.385 34.615 0.00 0.00 0.00 2.43
568 603 8.097038 AGCAAAATGACTGAATCTACACTCTAA 58.903 33.333 0.00 0.00 0.00 2.10
569 604 8.721478 GCAAAATGACTGAATCTACACTCTAAA 58.279 33.333 0.00 0.00 0.00 1.85
639 674 7.527568 AAAGACTTATATCTAGGAACGGAGG 57.472 40.000 0.00 0.00 0.00 4.30
640 675 5.572252 AGACTTATATCTAGGAACGGAGGG 58.428 45.833 0.00 0.00 0.00 4.30
641 676 5.312708 AGACTTATATCTAGGAACGGAGGGA 59.687 44.000 0.00 0.00 0.00 4.20
642 677 5.572252 ACTTATATCTAGGAACGGAGGGAG 58.428 45.833 0.00 0.00 0.00 4.30
643 678 5.074790 ACTTATATCTAGGAACGGAGGGAGT 59.925 44.000 0.00 0.00 0.00 3.85
644 679 6.274200 ACTTATATCTAGGAACGGAGGGAGTA 59.726 42.308 0.00 0.00 0.00 2.59
645 680 2.725221 TCTAGGAACGGAGGGAGTAC 57.275 55.000 0.00 0.00 0.00 2.73
646 681 2.203584 TCTAGGAACGGAGGGAGTACT 58.796 52.381 0.00 0.00 0.00 2.73
647 682 2.579860 TCTAGGAACGGAGGGAGTACTT 59.420 50.000 0.00 0.00 0.00 2.24
648 683 3.782523 TCTAGGAACGGAGGGAGTACTTA 59.217 47.826 0.00 0.00 0.00 2.24
649 684 3.684408 AGGAACGGAGGGAGTACTTAT 57.316 47.619 0.00 0.00 0.00 1.73
650 685 3.564264 AGGAACGGAGGGAGTACTTATC 58.436 50.000 0.00 0.00 0.00 1.75
651 686 3.053095 AGGAACGGAGGGAGTACTTATCA 60.053 47.826 0.00 0.00 0.00 2.15
652 687 3.318557 GGAACGGAGGGAGTACTTATCAG 59.681 52.174 0.00 0.00 0.00 2.90
653 688 2.308690 ACGGAGGGAGTACTTATCAGC 58.691 52.381 0.00 0.00 0.00 4.26
654 689 2.091775 ACGGAGGGAGTACTTATCAGCT 60.092 50.000 0.00 0.00 0.00 4.24
657 692 4.583489 CGGAGGGAGTACTTATCAGCTAAA 59.417 45.833 0.00 0.00 0.00 1.85
685 720 6.391227 CTTGGTTGTCAAGTTATTGGAAGT 57.609 37.500 0.00 0.00 45.81 3.01
690 725 7.721842 TGGTTGTCAAGTTATTGGAAGTCAATA 59.278 33.333 0.00 0.00 43.71 1.90
709 911 7.339721 AGTCAATATATATCCGGACTCGAATGT 59.660 37.037 6.12 0.00 39.00 2.71
768 976 0.440758 CATTTGCATGTTGCTTGCCG 59.559 50.000 0.75 0.00 45.31 5.69
844 1149 5.952347 ACACACTGTCTCTGTAGATGGAATA 59.048 40.000 0.00 0.00 33.30 1.75
845 1150 6.609212 ACACACTGTCTCTGTAGATGGAATAT 59.391 38.462 0.00 0.00 33.30 1.28
870 1323 9.823647 ATACTACATGTCAGACTTAATTTCAGG 57.176 33.333 0.00 0.00 0.00 3.86
917 1370 1.576618 CGTGTTGCCGCGTAAATCG 60.577 57.895 4.92 4.98 39.68 3.34
918 1371 1.494189 GTGTTGCCGCGTAAATCGT 59.506 52.632 4.92 0.00 42.13 3.73
927 1380 0.043310 GCGTAAATCGTGACGATGGC 60.043 55.000 22.11 17.47 46.30 4.40
928 1381 1.273688 CGTAAATCGTGACGATGGCA 58.726 50.000 22.11 6.78 46.30 4.92
929 1382 1.656594 CGTAAATCGTGACGATGGCAA 59.343 47.619 22.11 4.57 46.30 4.52
930 1383 2.285026 CGTAAATCGTGACGATGGCAAG 60.285 50.000 22.11 8.57 46.30 4.01
931 1384 2.093306 AAATCGTGACGATGGCAAGA 57.907 45.000 22.11 0.00 46.30 3.02
932 1385 2.315925 AATCGTGACGATGGCAAGAT 57.684 45.000 22.11 0.20 46.30 2.40
947 1409 3.984633 GGCAAGATTACGTAGCAGAGATC 59.015 47.826 6.16 1.09 0.00 2.75
982 1449 0.409092 TGTGATCCCCAGCATTTGGT 59.591 50.000 0.00 0.00 46.25 3.67
984 1451 0.409092 TGATCCCCAGCATTTGGTGT 59.591 50.000 8.75 0.00 46.25 4.16
1022 1489 3.302347 CTGCCGCGTTCTTCCCTCT 62.302 63.158 4.92 0.00 0.00 3.69
1030 1497 1.258676 GTTCTTCCCTCTGTCGACCT 58.741 55.000 14.12 0.00 0.00 3.85
1032 1499 0.404426 TCTTCCCTCTGTCGACCTCA 59.596 55.000 14.12 0.00 0.00 3.86
1314 1799 1.151668 GCACCTGTGTAAGTCTGCAG 58.848 55.000 7.63 7.63 31.04 4.41
1315 1800 1.151668 CACCTGTGTAAGTCTGCAGC 58.848 55.000 9.47 4.26 0.00 5.25
1316 1801 0.319900 ACCTGTGTAAGTCTGCAGCG 60.320 55.000 9.47 0.00 0.00 5.18
1339 1835 4.521062 GCCGCTCGCTCCATGTCT 62.521 66.667 0.00 0.00 0.00 3.41
1340 1836 2.185350 CCGCTCGCTCCATGTCTT 59.815 61.111 0.00 0.00 0.00 3.01
1342 1838 0.032678 CCGCTCGCTCCATGTCTTAT 59.967 55.000 0.00 0.00 0.00 1.73
1343 1839 1.539065 CCGCTCGCTCCATGTCTTATT 60.539 52.381 0.00 0.00 0.00 1.40
1344 1840 2.288213 CCGCTCGCTCCATGTCTTATTA 60.288 50.000 0.00 0.00 0.00 0.98
1345 1841 2.726760 CGCTCGCTCCATGTCTTATTAC 59.273 50.000 0.00 0.00 0.00 1.89
1346 1842 3.060602 GCTCGCTCCATGTCTTATTACC 58.939 50.000 0.00 0.00 0.00 2.85
1347 1843 3.492656 GCTCGCTCCATGTCTTATTACCA 60.493 47.826 0.00 0.00 0.00 3.25
1348 1844 4.693283 CTCGCTCCATGTCTTATTACCAA 58.307 43.478 0.00 0.00 0.00 3.67
1349 1845 4.693283 TCGCTCCATGTCTTATTACCAAG 58.307 43.478 0.00 0.00 0.00 3.61
1350 1846 4.404394 TCGCTCCATGTCTTATTACCAAGA 59.596 41.667 0.00 0.00 32.11 3.02
1351 1847 4.747108 CGCTCCATGTCTTATTACCAAGAG 59.253 45.833 0.00 0.00 35.25 2.85
1352 1848 5.059833 GCTCCATGTCTTATTACCAAGAGG 58.940 45.833 0.00 0.00 35.25 3.69
1353 1849 5.036117 TCCATGTCTTATTACCAAGAGGC 57.964 43.478 0.00 0.00 39.06 4.70
1354 1850 4.473196 TCCATGTCTTATTACCAAGAGGCA 59.527 41.667 0.00 0.00 39.06 4.75
1355 1851 5.132648 TCCATGTCTTATTACCAAGAGGCAT 59.867 40.000 0.00 0.00 39.06 4.40
1356 1852 5.471456 CCATGTCTTATTACCAAGAGGCATC 59.529 44.000 0.00 0.00 39.06 3.91
1357 1853 5.957771 TGTCTTATTACCAAGAGGCATCT 57.042 39.130 0.00 0.00 39.06 2.90
1358 1854 7.445121 CATGTCTTATTACCAAGAGGCATCTA 58.555 38.462 0.00 0.00 39.06 1.98
1359 1855 7.618019 TGTCTTATTACCAAGAGGCATCTAT 57.382 36.000 0.00 0.00 39.06 1.98
1360 1856 8.034313 TGTCTTATTACCAAGAGGCATCTATT 57.966 34.615 0.00 0.00 39.06 1.73
1361 1857 8.150945 TGTCTTATTACCAAGAGGCATCTATTC 58.849 37.037 0.00 0.00 39.06 1.75
1362 1858 8.371699 GTCTTATTACCAAGAGGCATCTATTCT 58.628 37.037 0.00 0.00 39.06 2.40
1363 1859 8.370940 TCTTATTACCAAGAGGCATCTATTCTG 58.629 37.037 0.00 0.00 39.06 3.02
1364 1860 5.957771 TTACCAAGAGGCATCTATTCTGT 57.042 39.130 0.00 0.00 39.06 3.41
1365 1861 7.618019 ATTACCAAGAGGCATCTATTCTGTA 57.382 36.000 0.00 0.00 39.06 2.74
1366 1862 5.543507 ACCAAGAGGCATCTATTCTGTAG 57.456 43.478 0.00 0.00 39.06 2.74
1367 1863 4.346418 ACCAAGAGGCATCTATTCTGTAGG 59.654 45.833 0.00 0.00 39.06 3.18
1368 1864 4.262808 CCAAGAGGCATCTATTCTGTAGGG 60.263 50.000 0.00 0.00 33.45 3.53
1369 1865 4.206244 AGAGGCATCTATTCTGTAGGGT 57.794 45.455 0.00 0.00 32.54 4.34
1370 1866 4.156477 AGAGGCATCTATTCTGTAGGGTC 58.844 47.826 0.00 0.00 32.54 4.46
1371 1867 3.898123 GAGGCATCTATTCTGTAGGGTCA 59.102 47.826 0.00 0.00 0.00 4.02
1372 1868 4.497516 AGGCATCTATTCTGTAGGGTCAT 58.502 43.478 0.00 0.00 0.00 3.06
1373 1869 4.285517 AGGCATCTATTCTGTAGGGTCATG 59.714 45.833 0.00 0.00 0.00 3.07
1382 1878 0.759346 GTAGGGTCATGGCTTCCGAT 59.241 55.000 0.00 0.00 0.00 4.18
1394 1890 3.214328 GGCTTCCGATGTGGTTATGATT 58.786 45.455 0.00 0.00 39.52 2.57
1396 1892 3.003689 GCTTCCGATGTGGTTATGATTGG 59.996 47.826 0.00 0.00 39.52 3.16
1401 1897 4.447290 CGATGTGGTTATGATTGGGTGTA 58.553 43.478 0.00 0.00 0.00 2.90
1482 1978 3.370104 TGTCCAATTCACAGGTTGGTTT 58.630 40.909 4.27 0.00 44.13 3.27
1484 1980 2.697751 TCCAATTCACAGGTTGGTTTGG 59.302 45.455 4.27 0.00 44.13 3.28
1485 1981 2.482864 CAATTCACAGGTTGGTTTGGC 58.517 47.619 0.00 0.00 0.00 4.52
1486 1982 2.086610 ATTCACAGGTTGGTTTGGCT 57.913 45.000 0.00 0.00 0.00 4.75
1488 1984 0.754957 TCACAGGTTGGTTTGGCTGG 60.755 55.000 0.00 0.00 0.00 4.85
1489 1985 2.133641 ACAGGTTGGTTTGGCTGGC 61.134 57.895 0.00 0.00 0.00 4.85
1490 1986 2.132996 CAGGTTGGTTTGGCTGGCA 61.133 57.895 0.00 0.00 0.00 4.92
1491 1987 2.133641 AGGTTGGTTTGGCTGGCAC 61.134 57.895 2.29 0.00 0.00 5.01
1492 1988 2.430610 GGTTGGTTTGGCTGGCACA 61.431 57.895 2.29 0.00 0.00 4.57
1494 1990 0.107945 GTTGGTTTGGCTGGCACAAA 60.108 50.000 2.29 0.00 38.70 2.83
1495 1991 0.615331 TTGGTTTGGCTGGCACAAAA 59.385 45.000 2.29 0.00 39.29 2.44
1496 1992 0.107945 TGGTTTGGCTGGCACAAAAC 60.108 50.000 10.69 10.69 43.86 2.43
1498 1994 0.107945 GTTTGGCTGGCACAAAACCA 60.108 50.000 2.29 0.00 39.29 3.67
1500 1996 1.965754 TTGGCTGGCACAAAACCACC 61.966 55.000 2.29 0.00 38.70 4.61
1501 1997 2.421314 GCTGGCACAAAACCACCC 59.579 61.111 0.00 0.00 38.70 4.61
1502 1998 2.727544 CTGGCACAAAACCACCCG 59.272 61.111 0.00 0.00 38.70 5.28
1504 2000 2.070654 CTGGCACAAAACCACCCGTC 62.071 60.000 0.00 0.00 38.70 4.79
1509 2005 2.804647 CACAAAACCACCCGTCTTTTC 58.195 47.619 0.00 0.00 0.00 2.29
1516 2012 2.248835 ACCCGTCTTTTCCGTTGCG 61.249 57.895 0.00 0.00 0.00 4.85
1528 2024 0.372334 CCGTTGCGGTACATTGCTAC 59.628 55.000 0.00 2.08 42.73 3.58
1529 2025 1.355971 CGTTGCGGTACATTGCTACT 58.644 50.000 13.39 0.00 35.22 2.57
1530 2026 1.323534 CGTTGCGGTACATTGCTACTC 59.676 52.381 13.39 0.71 35.22 2.59
1541 2037 0.895530 TTGCTACTCCCTCTGTTCCG 59.104 55.000 0.00 0.00 0.00 4.30
1549 2045 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1553 2049 4.322801 CCCTCTGTTCCGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1555 2051 5.120830 CCTCTGTTCCGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
1556 2052 4.994852 TCTGTTCCGAATTACTTGTCTTGG 59.005 41.667 0.00 0.00 0.00 3.61
1558 2054 5.556915 TGTTCCGAATTACTTGTCTTGGAT 58.443 37.500 0.00 0.00 0.00 3.41
1559 2055 6.001460 TGTTCCGAATTACTTGTCTTGGATT 58.999 36.000 0.00 0.00 0.00 3.01
1562 2058 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
1563 2059 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
1566 2062 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
1570 2066 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1571 2067 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1574 2070 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
1575 2071 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
1578 2074 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
1588 2084 4.948608 ATACGGATGTATCTCGTGCTAG 57.051 45.455 14.39 0.00 36.56 3.42
1589 2085 2.847441 ACGGATGTATCTCGTGCTAGA 58.153 47.619 0.00 0.00 34.23 2.43
1590 2086 2.548904 ACGGATGTATCTCGTGCTAGAC 59.451 50.000 0.00 0.00 34.23 2.59
1591 2087 2.548480 CGGATGTATCTCGTGCTAGACA 59.452 50.000 0.00 0.00 0.00 3.41
1593 2089 4.541779 GGATGTATCTCGTGCTAGACAAG 58.458 47.826 0.00 0.00 0.00 3.16
1594 2090 4.036971 GGATGTATCTCGTGCTAGACAAGT 59.963 45.833 0.00 0.00 0.00 3.16
1597 2093 1.905637 TCTCGTGCTAGACAAGTCCA 58.094 50.000 0.00 0.00 0.00 4.02
1602 2105 2.288213 CGTGCTAGACAAGTCCAAGACA 60.288 50.000 0.00 0.00 34.60 3.41
1611 2114 5.696724 AGACAAGTCCAAGACAAGTAATTCG 59.303 40.000 0.00 0.00 34.60 3.34
1617 2120 7.083785 GTCCAAGACAAGTAATTCGGAACGG 62.084 48.000 0.00 0.00 42.10 4.44
1634 2137 4.082136 GGAACGGAGGGAGTATATGTGATC 60.082 50.000 0.00 0.00 0.00 2.92
1640 2146 5.657302 GGAGGGAGTATATGTGATCGGTAAT 59.343 44.000 0.00 0.00 0.00 1.89
1672 2178 2.668001 GCAACGCATGTGCACTTTCATA 60.668 45.455 19.41 0.00 42.21 2.15
1674 2180 4.730324 GCAACGCATGTGCACTTTCATATA 60.730 41.667 19.41 0.00 42.21 0.86
1675 2181 4.801147 ACGCATGTGCACTTTCATATAG 57.199 40.909 19.41 2.55 42.21 1.31
1676 2182 4.191544 ACGCATGTGCACTTTCATATAGT 58.808 39.130 19.41 3.15 42.21 2.12
1677 2183 5.356426 ACGCATGTGCACTTTCATATAGTA 58.644 37.500 19.41 0.00 42.21 1.82
1678 2184 5.991606 ACGCATGTGCACTTTCATATAGTAT 59.008 36.000 19.41 0.00 42.21 2.12
1679 2185 7.151976 ACGCATGTGCACTTTCATATAGTATA 58.848 34.615 19.41 0.00 42.21 1.47
1680 2186 7.819415 ACGCATGTGCACTTTCATATAGTATAT 59.181 33.333 19.41 0.00 42.21 0.86
1681 2187 9.301153 CGCATGTGCACTTTCATATAGTATATA 57.699 33.333 19.41 0.00 42.21 0.86
1738 2244 1.586422 TGCTCGGCTTATGCTTGATC 58.414 50.000 0.13 0.00 39.59 2.92
1766 2272 3.698040 AGGAATGCCATCAGTCAAACATC 59.302 43.478 0.00 0.00 38.92 3.06
1772 2278 3.755378 GCCATCAGTCAAACATCTCACTT 59.245 43.478 0.00 0.00 0.00 3.16
1776 2282 6.427853 CCATCAGTCAAACATCTCACTTTGTA 59.572 38.462 0.00 0.00 0.00 2.41
1777 2283 7.041167 CCATCAGTCAAACATCTCACTTTGTAA 60.041 37.037 0.00 0.00 0.00 2.41
1782 2288 9.736023 AGTCAAACATCTCACTTTGTAATTTTC 57.264 29.630 0.00 0.00 0.00 2.29
1783 2289 8.682016 GTCAAACATCTCACTTTGTAATTTTCG 58.318 33.333 0.00 0.00 0.00 3.46
1784 2290 8.616942 TCAAACATCTCACTTTGTAATTTTCGA 58.383 29.630 0.00 0.00 0.00 3.71
1785 2291 9.232082 CAAACATCTCACTTTGTAATTTTCGAA 57.768 29.630 0.00 0.00 0.00 3.71
1786 2292 9.450807 AAACATCTCACTTTGTAATTTTCGAAG 57.549 29.630 0.00 2.42 33.81 3.79
1787 2293 8.154649 ACATCTCACTTTGTAATTTTCGAAGT 57.845 30.769 0.00 3.51 39.30 3.01
1794 2306 3.896122 TGTAATTTTCGAAGTGCTTGCC 58.104 40.909 0.00 0.00 0.00 4.52
1795 2307 3.316588 TGTAATTTTCGAAGTGCTTGCCA 59.683 39.130 0.00 0.00 0.00 4.92
1815 2327 3.060615 GCAAGGGCAGCACCTCTG 61.061 66.667 3.14 5.67 40.87 3.35
1826 2338 1.565759 AGCACCTCTGCCAATCCATAA 59.434 47.619 0.00 0.00 45.53 1.90
1827 2339 1.678101 GCACCTCTGCCAATCCATAAC 59.322 52.381 0.00 0.00 37.45 1.89
1828 2340 2.684927 GCACCTCTGCCAATCCATAACT 60.685 50.000 0.00 0.00 37.45 2.24
1833 2375 2.173356 TCTGCCAATCCATAACTGAGGG 59.827 50.000 0.00 0.00 0.00 4.30
1858 2400 2.432444 TGGGCGAGAACCAAATTACAG 58.568 47.619 0.00 0.00 34.44 2.74
1882 2424 6.206634 AGACACTCAAGACACAACAAGAAAAA 59.793 34.615 0.00 0.00 0.00 1.94
1884 2426 7.378181 ACACTCAAGACACAACAAGAAAAATT 58.622 30.769 0.00 0.00 0.00 1.82
1885 2427 8.519526 ACACTCAAGACACAACAAGAAAAATTA 58.480 29.630 0.00 0.00 0.00 1.40
1886 2428 9.013490 CACTCAAGACACAACAAGAAAAATTAG 57.987 33.333 0.00 0.00 0.00 1.73
1887 2429 8.956426 ACTCAAGACACAACAAGAAAAATTAGA 58.044 29.630 0.00 0.00 0.00 2.10
1888 2430 9.443283 CTCAAGACACAACAAGAAAAATTAGAG 57.557 33.333 0.00 0.00 0.00 2.43
1889 2431 7.915397 TCAAGACACAACAAGAAAAATTAGAGC 59.085 33.333 0.00 0.00 0.00 4.09
1891 2433 8.000780 AGACACAACAAGAAAAATTAGAGCTT 57.999 30.769 0.00 0.00 0.00 3.74
1893 2435 7.771183 ACACAACAAGAAAAATTAGAGCTTGA 58.229 30.769 0.00 0.00 39.27 3.02
1894 2436 8.250332 ACACAACAAGAAAAATTAGAGCTTGAA 58.750 29.630 0.00 0.00 39.27 2.69
1909 2591 2.814097 GCTTGAAGGCAGGGTTTAGACA 60.814 50.000 0.00 0.00 0.00 3.41
2007 2703 8.314021 TCTGTTACATCTTTTTAGCAGATCAGA 58.686 33.333 0.00 0.00 32.49 3.27
2052 2778 2.421424 GCATGTCCAGATCAACTCCAAC 59.579 50.000 0.00 0.00 0.00 3.77
2054 2780 4.330250 CATGTCCAGATCAACTCCAACTT 58.670 43.478 0.00 0.00 0.00 2.66
2055 2781 5.491070 CATGTCCAGATCAACTCCAACTTA 58.509 41.667 0.00 0.00 0.00 2.24
2056 2782 4.894784 TGTCCAGATCAACTCCAACTTAC 58.105 43.478 0.00 0.00 0.00 2.34
2057 2783 4.346709 TGTCCAGATCAACTCCAACTTACA 59.653 41.667 0.00 0.00 0.00 2.41
2144 2870 6.517914 TGAAAACACAGTGAAAACAAACAC 57.482 33.333 7.81 0.00 37.30 3.32
2146 2872 4.592485 AACACAGTGAAAACAAACACCA 57.408 36.364 7.81 0.00 37.69 4.17
2152 2878 4.385447 CAGTGAAAACAAACACCACAACTG 59.615 41.667 0.00 0.00 37.69 3.16
2196 2993 1.152963 AGAAAGCAACACCAGGCGT 60.153 52.632 0.00 0.00 34.54 5.68
2255 3052 2.057137 TCAAGCTTCCAAACAGCAGT 57.943 45.000 0.00 0.00 39.99 4.40
2345 3182 2.226962 ACATTCTCCAGCTGCCAAAT 57.773 45.000 8.66 4.06 0.00 2.32
2355 3222 2.845019 CTGCCAAATCAGCGAGTCA 58.155 52.632 0.00 0.00 0.00 3.41
2376 3243 5.030147 TCAACCTCTACCAGTTCATACCAT 58.970 41.667 0.00 0.00 0.00 3.55
2385 3252 5.440610 ACCAGTTCATACCATTTCTCCATC 58.559 41.667 0.00 0.00 0.00 3.51
2394 3261 1.961394 CATTTCTCCATCATGGCTGGG 59.039 52.381 0.00 6.45 37.47 4.45
2396 3263 2.203451 CTCCATCATGGCTGGGGC 60.203 66.667 0.00 0.00 37.47 5.80
2397 3264 2.697263 TCCATCATGGCTGGGGCT 60.697 61.111 0.00 0.00 37.47 5.19
2398 3265 2.520982 CCATCATGGCTGGGGCTG 60.521 66.667 0.00 0.00 38.73 4.85
2400 3267 1.153061 CATCATGGCTGGGGCTGAT 59.847 57.895 0.00 0.00 38.73 2.90
2403 3270 1.528542 CATGGCTGGGGCTGATGAG 60.529 63.158 0.00 0.00 38.73 2.90
2404 3271 1.695239 ATGGCTGGGGCTGATGAGA 60.695 57.895 0.00 0.00 38.73 3.27
2405 3272 1.284111 ATGGCTGGGGCTGATGAGAA 61.284 55.000 0.00 0.00 38.73 2.87
2406 3273 1.304282 GGCTGGGGCTGATGAGAAA 59.696 57.895 0.00 0.00 38.73 2.52
2407 3274 0.750911 GGCTGGGGCTGATGAGAAAG 60.751 60.000 0.00 0.00 38.73 2.62
2408 3275 0.034670 GCTGGGGCTGATGAGAAAGT 60.035 55.000 0.00 0.00 35.22 2.66
2409 3276 1.210478 GCTGGGGCTGATGAGAAAGTA 59.790 52.381 0.00 0.00 35.22 2.24
2410 3277 2.744494 GCTGGGGCTGATGAGAAAGTAG 60.744 54.545 0.00 0.00 35.22 2.57
2411 3278 2.768527 CTGGGGCTGATGAGAAAGTAGA 59.231 50.000 0.00 0.00 0.00 2.59
2412 3279 3.387962 TGGGGCTGATGAGAAAGTAGAT 58.612 45.455 0.00 0.00 0.00 1.98
2413 3280 3.389329 TGGGGCTGATGAGAAAGTAGATC 59.611 47.826 0.00 0.00 0.00 2.75
2414 3281 3.645687 GGGGCTGATGAGAAAGTAGATCT 59.354 47.826 0.00 0.00 0.00 2.75
2418 3285 5.509501 GGCTGATGAGAAAGTAGATCTCCAG 60.510 48.000 0.00 3.98 42.14 3.86
2453 3320 1.695239 AGATCCATCCCAGGCAGCA 60.695 57.895 0.00 0.00 0.00 4.41
2455 3322 0.608582 GATCCATCCCAGGCAGCATC 60.609 60.000 0.00 0.00 0.00 3.91
2560 3431 3.308438 CCAAAATCTCACTTTGGCTGG 57.692 47.619 1.64 0.00 44.64 4.85
2561 3432 2.611224 CCAAAATCTCACTTTGGCTGGC 60.611 50.000 1.64 0.00 44.64 4.85
2562 3433 1.260544 AAATCTCACTTTGGCTGGCC 58.739 50.000 4.43 4.43 0.00 5.36
2564 3435 2.505364 ATCTCACTTTGGCTGGCCCC 62.505 60.000 9.28 0.00 34.56 5.80
2565 3436 3.506743 TCACTTTGGCTGGCCCCA 61.507 61.111 9.28 0.00 34.56 4.96
2566 3437 2.284112 CACTTTGGCTGGCCCCAT 60.284 61.111 9.28 0.00 34.21 4.00
2568 3439 2.037687 CTTTGGCTGGCCCCATCA 59.962 61.111 9.28 0.00 34.21 3.07
2569 3440 2.283821 TTTGGCTGGCCCCATCAC 60.284 61.111 9.28 0.00 34.21 3.06
2570 3441 3.903281 TTTGGCTGGCCCCATCACC 62.903 63.158 9.28 0.00 34.21 4.02
2572 3443 4.380945 GGCTGGCCCCATCACCAA 62.381 66.667 0.00 0.00 34.96 3.67
2573 3444 2.042639 GCTGGCCCCATCACCAAT 60.043 61.111 0.00 0.00 34.96 3.16
2574 3445 1.229927 GCTGGCCCCATCACCAATA 59.770 57.895 0.00 0.00 34.96 1.90
2575 3446 0.396974 GCTGGCCCCATCACCAATAA 60.397 55.000 0.00 0.00 34.96 1.40
2576 3447 1.696063 CTGGCCCCATCACCAATAAG 58.304 55.000 0.00 0.00 34.96 1.73
2577 3448 0.261402 TGGCCCCATCACCAATAAGG 59.739 55.000 0.00 0.00 45.67 2.69
2596 3467 9.520515 CAATAAGGCAATAACCCATCTATAACT 57.479 33.333 0.00 0.00 0.00 2.24
2639 3510 7.947282 TCACAGAAATAACCCCTTTACAAAAG 58.053 34.615 0.00 0.00 0.00 2.27
2659 3530 6.672266 AAAGACAGGTATTCACAGAAGAGA 57.328 37.500 0.00 0.00 0.00 3.10
2707 3578 2.279741 TGTATTCGCTGTCAATGCTCC 58.720 47.619 0.00 0.00 0.00 4.70
2890 3761 8.769891 CAAAATGGTGAATTACTTTACCCAAAC 58.230 33.333 4.58 0.00 39.66 2.93
2899 3770 8.496707 AATTACTTTACCCAAACCATACTACG 57.503 34.615 0.00 0.00 0.00 3.51
3134 4018 0.881118 GATGCTTTGCTTGGGACGAA 59.119 50.000 0.00 0.00 0.00 3.85
3142 4026 1.277842 TGCTTGGGACGAATCTTGCTA 59.722 47.619 0.00 0.00 0.00 3.49
3201 4085 6.041523 AGCATCTCCCTCTTAACTCTCAATAC 59.958 42.308 0.00 0.00 0.00 1.89
3212 4096 2.164624 ACTCTCAATACGCACCTGACTC 59.835 50.000 0.00 0.00 0.00 3.36
3411 4295 6.446318 ACAATGTGCACGAAATGTTAGAAAT 58.554 32.000 13.13 0.00 0.00 2.17
3473 4357 2.435372 TTGTTCAGGGTGTTCAGCTT 57.565 45.000 2.16 0.00 0.00 3.74
3497 4381 4.024556 CCTACATCATTGGAGCAACGATTC 60.025 45.833 0.00 0.00 31.79 2.52
3532 4416 9.550406 TCTTTGGTTATCGTGGGTAATAAATAG 57.450 33.333 0.00 0.00 0.00 1.73
3753 4639 1.325476 ATACTCCCACCGTCCCGAAC 61.325 60.000 0.00 0.00 0.00 3.95
3762 4648 0.599558 CCGTCCCGAACTACTTGTCA 59.400 55.000 0.00 0.00 0.00 3.58
3828 4719 6.698008 TCCATTTACATTCATTTCTGCGAT 57.302 33.333 0.00 0.00 0.00 4.58
3841 4732 3.380479 TCTGCGATAAGTAATTCGGGG 57.620 47.619 0.00 0.00 35.93 5.73
3911 4802 9.262358 CCTAATGAATAGCTAACCTTTACTGAC 57.738 37.037 0.00 0.00 0.00 3.51
4068 4959 2.817839 GCTTAGGGGTGAAAAGGCTGAA 60.818 50.000 0.00 0.00 0.00 3.02
4113 5004 8.196378 AGATTATAGTTGGCTTCTACCCTAAG 57.804 38.462 0.00 0.00 0.00 2.18
4121 5012 2.236395 GCTTCTACCCTAAGTTGCTCCA 59.764 50.000 0.00 0.00 0.00 3.86
4186 5077 6.874288 ACAATCTCTTATTCTTATGCAGGC 57.126 37.500 0.00 0.00 0.00 4.85
4193 5084 1.635844 TTCTTATGCAGGCGTACGTG 58.364 50.000 17.90 9.35 34.75 4.49
4204 5095 1.670674 GGCGTACGTGGAATCAGTTCA 60.671 52.381 17.90 0.00 36.01 3.18
4351 5242 7.663081 TCATGAAAGAAGTTCTAGCTTTGATGT 59.337 33.333 5.65 0.00 41.13 3.06
4494 5408 8.250332 GCCATTTTACTGATGAAGGAAACATTA 58.750 33.333 0.00 0.00 38.51 1.90
4602 5516 7.167801 GGCTATTCTCGTCAATAACTGTAACTC 59.832 40.741 0.00 0.00 0.00 3.01
4741 5655 3.251729 TCAAAACTGAGCTGATGCACTTC 59.748 43.478 0.00 0.00 42.74 3.01
4963 6256 3.424962 CGAAATCTCGGGAAGAAACTTGC 60.425 47.826 0.00 0.00 41.57 4.01
4967 6260 0.181587 TCGGGAAGAAACTTGCCACA 59.818 50.000 18.80 5.12 0.00 4.17
5001 6294 1.081175 GGCTGGTCTTTTTGCTCGC 60.081 57.895 0.00 0.00 0.00 5.03
5005 6298 1.270550 CTGGTCTTTTTGCTCGCCAAT 59.729 47.619 0.00 0.00 32.49 3.16
5062 6794 8.809159 ATCATCACATAGTTCGTATTTCTCAG 57.191 34.615 0.00 0.00 0.00 3.35
5088 6822 1.331756 GTCAATGGATGCGGACATGTC 59.668 52.381 17.91 17.91 36.35 3.06
5273 7011 5.817296 TGAAGGGTGAAATATCAACAGATCG 59.183 40.000 0.00 0.00 45.56 3.69
5538 7277 4.023980 CCTAGTTCATCACCACCTAGACA 58.976 47.826 0.00 0.00 0.00 3.41
5715 7455 2.936919 AATTAGGGATGATGCTCGCA 57.063 45.000 0.00 0.00 0.00 5.10
5881 7621 3.247006 TCGTTCAGCTTCCTTATGGAC 57.753 47.619 0.00 0.00 43.06 4.02
5913 7653 3.872240 GCAGGTAAGCATGTTCAACCCTA 60.872 47.826 9.54 0.00 0.00 3.53
5984 7724 6.533012 CCACTCATGTGATAGCCGAATAATAG 59.467 42.308 0.94 0.00 46.55 1.73
6238 7978 5.512576 GCCAGAAACTAAAGGGAGAACACTA 60.513 44.000 0.00 0.00 0.00 2.74
6256 7996 7.398618 AGAACACTAGAAGAGATCCAAGAATCA 59.601 37.037 0.00 0.00 0.00 2.57
6277 8017 0.106769 TAATGGCCGGCACATGACAT 60.107 50.000 30.85 18.19 29.04 3.06
6290 8030 3.624861 CACATGACATGTTAAGAGGGAGC 59.375 47.826 18.52 0.00 42.70 4.70
6362 8102 9.831737 CTGAGAAAAATAACTGATACCTTTGTG 57.168 33.333 0.00 0.00 0.00 3.33
6506 8246 8.757982 AAAAATTAGCATGATATCCTGACACT 57.242 30.769 11.73 2.80 0.00 3.55
6507 8247 9.851686 AAAAATTAGCATGATATCCTGACACTA 57.148 29.630 11.73 1.95 0.00 2.74
6508 8248 9.499479 AAAATTAGCATGATATCCTGACACTAG 57.501 33.333 11.73 0.00 0.00 2.57
6509 8249 4.533919 AGCATGATATCCTGACACTAGC 57.466 45.455 11.73 0.00 0.00 3.42
6510 8250 3.260380 AGCATGATATCCTGACACTAGCC 59.740 47.826 11.73 0.00 0.00 3.93
6512 8252 4.262808 GCATGATATCCTGACACTAGCCTT 60.263 45.833 11.73 0.00 0.00 4.35
6514 8254 5.957771 TGATATCCTGACACTAGCCTTTT 57.042 39.130 0.00 0.00 0.00 2.27
6515 8255 5.674525 TGATATCCTGACACTAGCCTTTTG 58.325 41.667 0.00 0.00 0.00 2.44
6529 8275 0.996229 CTTTTGCGCGCATCAACGAA 60.996 50.000 36.83 22.26 34.06 3.85
6893 8643 8.380099 AGAATTAGGTACCAGTATTTGTGTTCA 58.620 33.333 15.94 0.00 0.00 3.18
6919 8669 1.344438 TCAACTGCTTCGGTGAGTGAT 59.656 47.619 0.00 0.00 0.00 3.06
7018 8768 5.627968 GCTTCATGCTTACTACTTTCCTCCT 60.628 44.000 0.00 0.00 38.95 3.69
7038 8788 3.127030 CCTTTATGACCCGCTTGAAGTTC 59.873 47.826 0.00 0.00 0.00 3.01
7041 8791 2.032071 ACCCGCTTGAAGTTCCCG 59.968 61.111 0.00 0.84 0.00 5.14
7167 8928 2.418628 ACACGAACAACAACACAAGAGG 59.581 45.455 0.00 0.00 0.00 3.69
7229 8990 2.096713 CACGCCAAAGAACTCTTCGAAG 60.097 50.000 19.35 19.35 34.61 3.79
7270 9031 2.505819 AGAAGAATGGCCGGTCTACAAT 59.494 45.455 7.97 0.00 0.00 2.71
7271 9032 2.332063 AGAATGGCCGGTCTACAATG 57.668 50.000 7.97 0.00 0.00 2.82
7272 9033 0.663153 GAATGGCCGGTCTACAATGC 59.337 55.000 7.97 0.00 0.00 3.56
7273 9034 0.751643 AATGGCCGGTCTACAATGCC 60.752 55.000 7.97 0.00 42.49 4.40
7274 9035 2.270850 GGCCGGTCTACAATGCCA 59.729 61.111 1.90 0.00 41.76 4.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.364632 CAAACATCCGCCTGTCCAATA 58.635 47.619 0.00 0.00 0.00 1.90
10 11 0.893270 CCAAACATCCGCCTGTCCAA 60.893 55.000 0.00 0.00 0.00 3.53
12 13 1.002624 TCCAAACATCCGCCTGTCC 60.003 57.895 0.00 0.00 0.00 4.02
14 15 0.321653 GAGTCCAAACATCCGCCTGT 60.322 55.000 0.00 0.00 0.00 4.00
18 20 1.648467 GCCAGAGTCCAAACATCCGC 61.648 60.000 0.00 0.00 0.00 5.54
20 22 1.909700 TTGCCAGAGTCCAAACATCC 58.090 50.000 0.00 0.00 0.00 3.51
46 48 4.952957 TCCCATAAATCGGAAGCAAATCAA 59.047 37.500 0.00 0.00 0.00 2.57
49 51 4.956075 AGTTCCCATAAATCGGAAGCAAAT 59.044 37.500 0.00 0.00 38.82 2.32
58 60 3.486108 CGAAGTCGAGTTCCCATAAATCG 59.514 47.826 23.85 8.79 43.02 3.34
65 67 0.824595 TGTCCGAAGTCGAGTTCCCA 60.825 55.000 23.85 16.06 43.02 4.37
71 73 2.870161 CGCGTGTCCGAAGTCGAG 60.870 66.667 0.00 0.00 43.02 4.04
76 78 4.052229 ACCTCCGCGTGTCCGAAG 62.052 66.667 4.92 0.00 35.63 3.79
89 91 1.078759 CATCAGTCCGCGAACACCTC 61.079 60.000 8.23 0.00 0.00 3.85
104 106 2.049888 TCCAACATATTGCCGCATCA 57.950 45.000 0.00 0.00 34.17 3.07
116 118 5.243060 TCGGACGATGTAAGATATCCAACAT 59.757 40.000 16.50 16.50 35.34 2.71
139 141 2.349297 ACGTCTGAATCGAGGTGTTC 57.651 50.000 0.00 0.00 31.48 3.18
140 142 2.800544 CAAACGTCTGAATCGAGGTGTT 59.199 45.455 0.00 0.00 32.86 3.32
153 155 2.474612 AAAACGCCCGCAAACGTCT 61.475 52.632 0.00 0.00 42.68 4.18
181 183 0.623723 GGGTTAGGGCATCTCCAACA 59.376 55.000 0.00 0.00 36.21 3.33
231 233 3.705934 TTCTTGGTGCGGTGGTGCA 62.706 57.895 0.00 0.00 43.95 4.57
261 263 1.340889 GGCACAAGGATGACAAAAGCA 59.659 47.619 0.00 0.00 0.00 3.91
262 264 1.666888 CGGCACAAGGATGACAAAAGC 60.667 52.381 0.00 0.00 0.00 3.51
304 307 2.808543 GACAAAGAAAGGATGTCGTGCT 59.191 45.455 0.00 0.00 34.72 4.40
326 329 6.515272 AGGATGAACCAATGTGTATTTGAC 57.485 37.500 0.00 0.00 42.04 3.18
329 332 7.961351 TGAAAAGGATGAACCAATGTGTATTT 58.039 30.769 0.00 0.00 42.04 1.40
344 347 6.348704 GCCAATTGGTGAAAATGAAAAGGATG 60.349 38.462 25.19 0.00 37.57 3.51
347 382 5.065235 AGCCAATTGGTGAAAATGAAAAGG 58.935 37.500 25.19 0.00 37.57 3.11
363 398 2.613977 CCTGACGACAAGAGAGCCAATT 60.614 50.000 0.00 0.00 0.00 2.32
371 406 5.696724 AGTTTCAAATACCTGACGACAAGAG 59.303 40.000 0.00 0.00 0.00 2.85
381 416 7.106239 ACATGAGACCTAGTTTCAAATACCTG 58.894 38.462 0.00 0.00 30.75 4.00
398 433 8.391106 GGTTATCAAAACATACTGACATGAGAC 58.609 37.037 0.00 0.00 0.00 3.36
434 469 6.810911 AGTGATAGTAATCTGGCAAGTACTG 58.189 40.000 15.20 0.00 32.93 2.74
506 541 9.871299 GTCTCTTGTTGAAATCTCTAAAAAGAC 57.129 33.333 0.00 0.00 0.00 3.01
507 542 9.838339 AGTCTCTTGTTGAAATCTCTAAAAAGA 57.162 29.630 0.00 0.00 0.00 2.52
518 553 9.250624 GCTTCGTATATAGTCTCTTGTTGAAAT 57.749 33.333 0.00 0.00 0.00 2.17
519 554 8.248253 TGCTTCGTATATAGTCTCTTGTTGAAA 58.752 33.333 0.00 0.00 0.00 2.69
520 555 7.768240 TGCTTCGTATATAGTCTCTTGTTGAA 58.232 34.615 0.00 0.00 0.00 2.69
521 556 7.329588 TGCTTCGTATATAGTCTCTTGTTGA 57.670 36.000 0.00 0.00 0.00 3.18
522 557 7.987268 TTGCTTCGTATATAGTCTCTTGTTG 57.013 36.000 0.00 0.00 0.00 3.33
523 558 8.997621 TTTTGCTTCGTATATAGTCTCTTGTT 57.002 30.769 0.00 0.00 0.00 2.83
524 559 9.035607 CATTTTGCTTCGTATATAGTCTCTTGT 57.964 33.333 0.00 0.00 0.00 3.16
525 560 9.249457 TCATTTTGCTTCGTATATAGTCTCTTG 57.751 33.333 0.00 0.00 0.00 3.02
526 561 9.250624 GTCATTTTGCTTCGTATATAGTCTCTT 57.749 33.333 0.00 0.00 0.00 2.85
527 562 8.634444 AGTCATTTTGCTTCGTATATAGTCTCT 58.366 33.333 0.00 0.00 0.00 3.10
528 563 8.695284 CAGTCATTTTGCTTCGTATATAGTCTC 58.305 37.037 0.00 0.00 0.00 3.36
529 564 8.414003 TCAGTCATTTTGCTTCGTATATAGTCT 58.586 33.333 0.00 0.00 0.00 3.24
530 565 8.575565 TCAGTCATTTTGCTTCGTATATAGTC 57.424 34.615 0.00 0.00 0.00 2.59
531 566 8.942338 TTCAGTCATTTTGCTTCGTATATAGT 57.058 30.769 0.00 0.00 0.00 2.12
533 568 9.764363 AGATTCAGTCATTTTGCTTCGTATATA 57.236 29.630 0.00 0.00 0.00 0.86
534 569 8.668510 AGATTCAGTCATTTTGCTTCGTATAT 57.331 30.769 0.00 0.00 0.00 0.86
535 570 9.031360 GTAGATTCAGTCATTTTGCTTCGTATA 57.969 33.333 0.00 0.00 0.00 1.47
536 571 6.992063 AGATTCAGTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
537 572 6.871492 TGTAGATTCAGTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
538 573 5.700832 TGTAGATTCAGTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
539 574 6.017933 GTGTAGATTCAGTCATTTTGCTTCG 58.982 40.000 0.00 0.00 0.00 3.79
540 575 7.118971 AGAGTGTAGATTCAGTCATTTTGCTTC 59.881 37.037 0.00 0.00 39.44 3.86
541 576 6.939163 AGAGTGTAGATTCAGTCATTTTGCTT 59.061 34.615 0.00 0.00 39.44 3.91
542 577 6.471146 AGAGTGTAGATTCAGTCATTTTGCT 58.529 36.000 0.00 0.00 39.44 3.91
543 578 6.734104 AGAGTGTAGATTCAGTCATTTTGC 57.266 37.500 0.00 0.00 39.44 3.68
613 648 8.422566 CCTCCGTTCCTAGATATAAGTCTTTTT 58.577 37.037 0.00 0.00 0.00 1.94
614 649 7.015389 CCCTCCGTTCCTAGATATAAGTCTTTT 59.985 40.741 0.00 0.00 0.00 2.27
615 650 6.494146 CCCTCCGTTCCTAGATATAAGTCTTT 59.506 42.308 0.00 0.00 0.00 2.52
616 651 6.011481 CCCTCCGTTCCTAGATATAAGTCTT 58.989 44.000 0.00 0.00 0.00 3.01
617 652 5.312708 TCCCTCCGTTCCTAGATATAAGTCT 59.687 44.000 0.00 0.00 0.00 3.24
618 653 5.568392 TCCCTCCGTTCCTAGATATAAGTC 58.432 45.833 0.00 0.00 0.00 3.01
619 654 5.074790 ACTCCCTCCGTTCCTAGATATAAGT 59.925 44.000 0.00 0.00 0.00 2.24
620 655 5.572252 ACTCCCTCCGTTCCTAGATATAAG 58.428 45.833 0.00 0.00 0.00 1.73
621 656 5.595814 ACTCCCTCCGTTCCTAGATATAA 57.404 43.478 0.00 0.00 0.00 0.98
622 657 5.789575 AGTACTCCCTCCGTTCCTAGATATA 59.210 44.000 0.00 0.00 0.00 0.86
623 658 4.602732 AGTACTCCCTCCGTTCCTAGATAT 59.397 45.833 0.00 0.00 0.00 1.63
624 659 3.979347 AGTACTCCCTCCGTTCCTAGATA 59.021 47.826 0.00 0.00 0.00 1.98
625 660 2.784682 AGTACTCCCTCCGTTCCTAGAT 59.215 50.000 0.00 0.00 0.00 1.98
626 661 2.203584 AGTACTCCCTCCGTTCCTAGA 58.796 52.381 0.00 0.00 0.00 2.43
627 662 2.732844 AGTACTCCCTCCGTTCCTAG 57.267 55.000 0.00 0.00 0.00 3.02
628 663 4.166725 TGATAAGTACTCCCTCCGTTCCTA 59.833 45.833 0.00 0.00 0.00 2.94
629 664 3.053095 TGATAAGTACTCCCTCCGTTCCT 60.053 47.826 0.00 0.00 0.00 3.36
630 665 3.294214 TGATAAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
631 666 3.243468 GCTGATAAGTACTCCCTCCGTTC 60.243 52.174 0.00 0.00 0.00 3.95
632 667 2.694109 GCTGATAAGTACTCCCTCCGTT 59.306 50.000 0.00 0.00 0.00 4.44
633 668 2.091775 AGCTGATAAGTACTCCCTCCGT 60.092 50.000 0.00 0.00 0.00 4.69
634 669 2.588620 AGCTGATAAGTACTCCCTCCG 58.411 52.381 0.00 0.00 0.00 4.63
635 670 6.673839 ATTTAGCTGATAAGTACTCCCTCC 57.326 41.667 0.00 0.00 0.00 4.30
663 698 5.888724 TGACTTCCAATAACTTGACAACCAA 59.111 36.000 0.00 0.00 34.04 3.67
685 720 7.640597 ACATTCGAGTCCGGATATATATTGA 57.359 36.000 7.81 0.00 30.90 2.57
690 725 4.770531 TCCAACATTCGAGTCCGGATATAT 59.229 41.667 7.81 0.00 30.90 0.86
709 911 7.714813 TCATATGAAATGCGAGAACTAATCCAA 59.285 33.333 1.98 0.00 0.00 3.53
768 976 2.338577 ATACTTCTCCCAGCATGCAC 57.661 50.000 21.98 0.00 31.97 4.57
777 1052 4.079253 TGCAACAGGAAAATACTTCTCCC 58.921 43.478 0.00 0.00 0.00 4.30
844 1149 9.823647 CCTGAAATTAAGTCTGACATGTAGTAT 57.176 33.333 10.88 0.00 0.00 2.12
845 1150 8.258007 CCCTGAAATTAAGTCTGACATGTAGTA 58.742 37.037 10.88 0.00 0.00 1.82
862 1315 5.047092 ACGCTGAATCAAATTCCCTGAAATT 60.047 36.000 0.00 0.00 38.50 1.82
870 1323 4.685169 TTCAGACGCTGAATCAAATTCC 57.315 40.909 15.33 0.00 44.27 3.01
915 1368 2.536365 GTAATCTTGCCATCGTCACGA 58.464 47.619 0.28 0.28 41.13 4.35
917 1370 2.268298 ACGTAATCTTGCCATCGTCAC 58.732 47.619 0.00 0.00 0.00 3.67
918 1371 2.665649 ACGTAATCTTGCCATCGTCA 57.334 45.000 0.00 0.00 0.00 4.35
919 1372 2.471743 GCTACGTAATCTTGCCATCGTC 59.528 50.000 0.00 0.00 33.70 4.20
920 1373 2.159156 TGCTACGTAATCTTGCCATCGT 60.159 45.455 0.00 0.00 35.73 3.73
921 1374 2.469826 TGCTACGTAATCTTGCCATCG 58.530 47.619 0.00 0.00 0.00 3.84
923 1376 3.384789 TCTCTGCTACGTAATCTTGCCAT 59.615 43.478 0.00 0.00 0.00 4.40
924 1377 2.758423 TCTCTGCTACGTAATCTTGCCA 59.242 45.455 0.00 0.00 0.00 4.92
925 1378 3.438297 TCTCTGCTACGTAATCTTGCC 57.562 47.619 0.00 0.00 0.00 4.52
926 1379 3.666334 CGATCTCTGCTACGTAATCTTGC 59.334 47.826 0.00 0.00 0.00 4.01
927 1380 3.666334 GCGATCTCTGCTACGTAATCTTG 59.334 47.826 0.00 0.00 0.00 3.02
928 1381 3.607310 CGCGATCTCTGCTACGTAATCTT 60.607 47.826 0.00 0.00 0.00 2.40
929 1382 2.096169 CGCGATCTCTGCTACGTAATCT 60.096 50.000 0.00 0.00 0.00 2.40
930 1383 2.235020 CGCGATCTCTGCTACGTAATC 58.765 52.381 0.00 0.00 0.00 1.75
931 1384 1.663445 GCGCGATCTCTGCTACGTAAT 60.663 52.381 12.10 0.00 0.00 1.89
932 1385 0.316772 GCGCGATCTCTGCTACGTAA 60.317 55.000 12.10 0.00 0.00 3.18
947 1409 1.396648 TCACATATTTCTGGTTGCGCG 59.603 47.619 0.00 0.00 0.00 6.86
982 1449 2.107041 ATCCGTCGTGGCCTTCAACA 62.107 55.000 3.32 0.00 37.80 3.33
984 1451 1.375396 CATCCGTCGTGGCCTTCAA 60.375 57.895 3.32 0.00 37.80 2.69
1012 1479 1.203013 TGAGGTCGACAGAGGGAAGAA 60.203 52.381 18.91 0.00 0.00 2.52
1013 1480 0.404426 TGAGGTCGACAGAGGGAAGA 59.596 55.000 18.91 0.00 0.00 2.87
1014 1481 0.528470 GTGAGGTCGACAGAGGGAAG 59.472 60.000 18.91 0.00 0.00 3.46
1015 1482 0.898789 GGTGAGGTCGACAGAGGGAA 60.899 60.000 18.91 0.00 0.00 3.97
1339 1835 8.034313 ACAGAATAGATGCCTCTTGGTAATAA 57.966 34.615 0.00 0.00 35.27 1.40
1340 1836 7.618019 ACAGAATAGATGCCTCTTGGTAATA 57.382 36.000 0.00 0.00 35.27 0.98
1342 1838 5.957771 ACAGAATAGATGCCTCTTGGTAA 57.042 39.130 0.00 0.00 35.27 2.85
1343 1839 5.540337 CCTACAGAATAGATGCCTCTTGGTA 59.460 44.000 0.00 0.00 35.27 3.25
1344 1840 4.346418 CCTACAGAATAGATGCCTCTTGGT 59.654 45.833 0.00 0.00 35.27 3.67
1345 1841 4.262808 CCCTACAGAATAGATGCCTCTTGG 60.263 50.000 0.00 0.00 32.66 3.61
1346 1842 4.346418 ACCCTACAGAATAGATGCCTCTTG 59.654 45.833 0.00 0.00 32.66 3.02
1347 1843 4.561752 ACCCTACAGAATAGATGCCTCTT 58.438 43.478 0.00 0.00 32.66 2.85
1348 1844 4.156477 GACCCTACAGAATAGATGCCTCT 58.844 47.826 0.00 0.00 35.39 3.69
1349 1845 3.898123 TGACCCTACAGAATAGATGCCTC 59.102 47.826 0.00 0.00 0.00 4.70
1350 1846 3.928754 TGACCCTACAGAATAGATGCCT 58.071 45.455 0.00 0.00 0.00 4.75
1351 1847 4.564406 CCATGACCCTACAGAATAGATGCC 60.564 50.000 0.00 0.00 0.00 4.40
1352 1848 4.573900 CCATGACCCTACAGAATAGATGC 58.426 47.826 0.00 0.00 0.00 3.91
1353 1849 4.285517 AGCCATGACCCTACAGAATAGATG 59.714 45.833 0.00 0.00 0.00 2.90
1354 1850 4.497516 AGCCATGACCCTACAGAATAGAT 58.502 43.478 0.00 0.00 0.00 1.98
1355 1851 3.928754 AGCCATGACCCTACAGAATAGA 58.071 45.455 0.00 0.00 0.00 1.98
1356 1852 4.503991 GGAAGCCATGACCCTACAGAATAG 60.504 50.000 0.00 0.00 0.00 1.73
1357 1853 3.391296 GGAAGCCATGACCCTACAGAATA 59.609 47.826 0.00 0.00 0.00 1.75
1358 1854 2.173569 GGAAGCCATGACCCTACAGAAT 59.826 50.000 0.00 0.00 0.00 2.40
1359 1855 1.559682 GGAAGCCATGACCCTACAGAA 59.440 52.381 0.00 0.00 0.00 3.02
1360 1856 1.204146 GGAAGCCATGACCCTACAGA 58.796 55.000 0.00 0.00 0.00 3.41
1361 1857 0.179073 CGGAAGCCATGACCCTACAG 60.179 60.000 0.00 0.00 0.00 2.74
1362 1858 0.616395 TCGGAAGCCATGACCCTACA 60.616 55.000 0.00 0.00 0.00 2.74
1363 1859 0.759346 ATCGGAAGCCATGACCCTAC 59.241 55.000 0.00 0.00 0.00 3.18
1364 1860 0.758734 CATCGGAAGCCATGACCCTA 59.241 55.000 0.00 0.00 0.00 3.53
1365 1861 1.274703 ACATCGGAAGCCATGACCCT 61.275 55.000 0.00 0.00 0.00 4.34
1366 1862 1.097547 CACATCGGAAGCCATGACCC 61.098 60.000 0.00 0.00 0.00 4.46
1367 1863 1.097547 CCACATCGGAAGCCATGACC 61.098 60.000 0.00 0.00 36.56 4.02
1368 1864 0.392998 ACCACATCGGAAGCCATGAC 60.393 55.000 0.00 0.00 38.63 3.06
1369 1865 0.327924 AACCACATCGGAAGCCATGA 59.672 50.000 0.00 0.00 38.63 3.07
1370 1866 2.036958 TAACCACATCGGAAGCCATG 57.963 50.000 0.00 0.00 38.63 3.66
1371 1867 2.172505 TCATAACCACATCGGAAGCCAT 59.827 45.455 0.00 0.00 38.63 4.40
1372 1868 1.557371 TCATAACCACATCGGAAGCCA 59.443 47.619 0.00 0.00 38.63 4.75
1373 1869 2.325583 TCATAACCACATCGGAAGCC 57.674 50.000 0.00 0.00 38.63 4.35
1382 1878 5.443230 TCATACACCCAATCATAACCACA 57.557 39.130 0.00 0.00 0.00 4.17
1394 1890 3.434882 CCAACCTGCATATCATACACCCA 60.435 47.826 0.00 0.00 0.00 4.51
1396 1892 3.149196 CCCAACCTGCATATCATACACC 58.851 50.000 0.00 0.00 0.00 4.16
1401 1897 5.319453 CAGAATACCCAACCTGCATATCAT 58.681 41.667 0.00 0.00 0.00 2.45
1482 1978 2.430610 GGTGGTTTTGTGCCAGCCA 61.431 57.895 2.45 0.00 45.73 4.75
1485 1981 2.070654 GACGGGTGGTTTTGTGCCAG 62.071 60.000 0.00 0.00 36.57 4.85
1486 1982 2.043852 ACGGGTGGTTTTGTGCCA 60.044 55.556 0.00 0.00 0.00 4.92
1488 1984 0.458260 AAAGACGGGTGGTTTTGTGC 59.542 50.000 0.00 0.00 0.00 4.57
1489 1985 2.480587 GGAAAAGACGGGTGGTTTTGTG 60.481 50.000 0.00 0.00 0.00 3.33
1490 1986 1.752498 GGAAAAGACGGGTGGTTTTGT 59.248 47.619 0.00 0.00 0.00 2.83
1491 1987 1.268845 CGGAAAAGACGGGTGGTTTTG 60.269 52.381 0.00 0.00 0.00 2.44
1492 1988 1.026584 CGGAAAAGACGGGTGGTTTT 58.973 50.000 0.00 0.00 0.00 2.43
1494 1990 0.107066 AACGGAAAAGACGGGTGGTT 60.107 50.000 0.00 0.00 35.23 3.67
1495 1991 0.816421 CAACGGAAAAGACGGGTGGT 60.816 55.000 0.00 0.00 35.23 4.16
1496 1992 1.946267 CAACGGAAAAGACGGGTGG 59.054 57.895 0.00 0.00 35.23 4.61
1498 1994 2.248835 CGCAACGGAAAAGACGGGT 61.249 57.895 0.00 0.00 35.23 5.28
1516 2012 2.766828 ACAGAGGGAGTAGCAATGTACC 59.233 50.000 0.00 0.00 0.00 3.34
1520 2016 2.739932 CGGAACAGAGGGAGTAGCAATG 60.740 54.545 0.00 0.00 0.00 2.82
1528 2024 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1529 2025 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1530 2026 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1541 2037 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
1549 2045 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
1553 2049 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
1569 2065 2.548904 GTCTAGCACGAGATACATCCGT 59.451 50.000 0.00 0.00 35.26 4.69
1570 2066 2.548480 TGTCTAGCACGAGATACATCCG 59.452 50.000 0.00 0.00 0.00 4.18
1571 2067 4.036971 ACTTGTCTAGCACGAGATACATCC 59.963 45.833 13.42 0.00 38.72 3.51
1574 2070 3.377485 GGACTTGTCTAGCACGAGATACA 59.623 47.826 13.42 0.00 38.72 2.29
1575 2071 3.377485 TGGACTTGTCTAGCACGAGATAC 59.623 47.826 13.42 6.40 38.72 2.24
1578 2074 1.905637 TGGACTTGTCTAGCACGAGA 58.094 50.000 13.42 0.00 38.72 4.04
1579 2075 2.229062 TCTTGGACTTGTCTAGCACGAG 59.771 50.000 0.00 7.60 41.93 4.18
1580 2076 2.030185 GTCTTGGACTTGTCTAGCACGA 60.030 50.000 0.00 0.00 0.00 4.35
1581 2077 2.288213 TGTCTTGGACTTGTCTAGCACG 60.288 50.000 0.61 0.00 33.15 5.34
1582 2078 3.386768 TGTCTTGGACTTGTCTAGCAC 57.613 47.619 0.61 0.00 33.15 4.40
1583 2079 3.388024 ACTTGTCTTGGACTTGTCTAGCA 59.612 43.478 0.61 0.00 33.15 3.49
1584 2080 3.996480 ACTTGTCTTGGACTTGTCTAGC 58.004 45.455 0.61 0.00 33.15 3.42
1585 2081 7.062371 CGAATTACTTGTCTTGGACTTGTCTAG 59.938 40.741 0.61 0.00 33.15 2.43
1586 2082 6.866770 CGAATTACTTGTCTTGGACTTGTCTA 59.133 38.462 0.61 0.00 33.15 2.59
1587 2083 5.696724 CGAATTACTTGTCTTGGACTTGTCT 59.303 40.000 0.61 0.00 33.15 3.41
1588 2084 5.107065 CCGAATTACTTGTCTTGGACTTGTC 60.107 44.000 0.00 0.00 33.15 3.18
1589 2085 4.755123 CCGAATTACTTGTCTTGGACTTGT 59.245 41.667 0.00 1.60 33.15 3.16
1590 2086 4.994852 TCCGAATTACTTGTCTTGGACTTG 59.005 41.667 0.00 0.00 33.15 3.16
1591 2087 5.223449 TCCGAATTACTTGTCTTGGACTT 57.777 39.130 0.00 0.00 33.15 3.01
1593 2089 4.143179 CGTTCCGAATTACTTGTCTTGGAC 60.143 45.833 0.00 0.00 0.00 4.02
1594 2090 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
1597 2093 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1602 2105 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
1611 2114 3.228453 TCACATATACTCCCTCCGTTCC 58.772 50.000 0.00 0.00 0.00 3.62
1617 2120 6.777213 ATTACCGATCACATATACTCCCTC 57.223 41.667 0.00 0.00 0.00 4.30
1619 2122 6.096423 TGCTATTACCGATCACATATACTCCC 59.904 42.308 0.00 0.00 0.00 4.30
1621 2124 7.763356 ACTGCTATTACCGATCACATATACTC 58.237 38.462 0.00 0.00 0.00 2.59
1629 2132 4.230657 CTGCTACTGCTATTACCGATCAC 58.769 47.826 0.00 0.00 40.48 3.06
1634 2137 2.509052 TGCTGCTACTGCTATTACCG 57.491 50.000 0.00 0.00 40.48 4.02
1640 2146 0.108186 ATGCGTTGCTGCTACTGCTA 60.108 50.000 22.12 13.93 40.48 3.49
1738 2244 2.686915 GACTGATGGCATTCCTCTTTGG 59.313 50.000 0.00 0.00 37.10 3.28
1766 2272 6.430451 AGCACTTCGAAAATTACAAAGTGAG 58.570 36.000 19.15 0.00 46.09 3.51
1772 2278 4.202060 TGGCAAGCACTTCGAAAATTACAA 60.202 37.500 0.00 0.00 0.00 2.41
1776 2282 3.383761 CTTGGCAAGCACTTCGAAAATT 58.616 40.909 15.25 0.00 0.00 1.82
1777 2283 2.288395 CCTTGGCAAGCACTTCGAAAAT 60.288 45.455 21.77 0.00 0.00 1.82
1782 2288 2.074230 TTGCCTTGGCAAGCACTTCG 62.074 55.000 21.59 8.06 39.10 3.79
1783 2289 0.319297 CTTGCCTTGGCAAGCACTTC 60.319 55.000 32.70 7.97 40.26 3.01
1784 2290 1.744014 CTTGCCTTGGCAAGCACTT 59.256 52.632 32.70 0.00 40.26 3.16
1785 2291 2.205152 CCTTGCCTTGGCAAGCACT 61.205 57.895 35.91 0.00 43.96 4.40
1786 2292 2.341176 CCTTGCCTTGGCAAGCAC 59.659 61.111 35.91 15.50 43.96 4.40
1787 2293 2.918802 CCCTTGCCTTGGCAAGCA 60.919 61.111 35.91 18.86 43.96 3.91
1794 2306 3.688159 GGTGCTGCCCTTGCCTTG 61.688 66.667 0.00 0.00 36.33 3.61
1795 2307 3.875510 GAGGTGCTGCCCTTGCCTT 62.876 63.158 10.40 0.00 38.26 4.35
1808 2320 2.947652 CAGTTATGGATTGGCAGAGGTG 59.052 50.000 0.00 0.00 0.00 4.00
1815 2327 3.297134 TTCCCTCAGTTATGGATTGGC 57.703 47.619 0.00 0.00 0.00 4.52
1816 2328 5.069516 CCATTTTCCCTCAGTTATGGATTGG 59.930 44.000 0.00 0.00 35.63 3.16
1819 2331 4.808042 CCCATTTTCCCTCAGTTATGGAT 58.192 43.478 0.00 0.00 35.63 3.41
1821 2333 2.695147 GCCCATTTTCCCTCAGTTATGG 59.305 50.000 0.00 0.00 33.86 2.74
1826 2338 0.035056 CTCGCCCATTTTCCCTCAGT 60.035 55.000 0.00 0.00 0.00 3.41
1827 2339 0.253044 TCTCGCCCATTTTCCCTCAG 59.747 55.000 0.00 0.00 0.00 3.35
1828 2340 0.695924 TTCTCGCCCATTTTCCCTCA 59.304 50.000 0.00 0.00 0.00 3.86
1833 2375 3.592898 ATTTGGTTCTCGCCCATTTTC 57.407 42.857 0.00 0.00 0.00 2.29
1858 2400 5.545658 TTTCTTGTTGTGTCTTGAGTGTC 57.454 39.130 0.00 0.00 0.00 3.67
1882 2424 1.918957 ACCCTGCCTTCAAGCTCTAAT 59.081 47.619 0.00 0.00 0.00 1.73
1884 2426 1.362224 AACCCTGCCTTCAAGCTCTA 58.638 50.000 0.00 0.00 0.00 2.43
1885 2427 0.480252 AAACCCTGCCTTCAAGCTCT 59.520 50.000 0.00 0.00 0.00 4.09
1886 2428 2.087646 CTAAACCCTGCCTTCAAGCTC 58.912 52.381 0.00 0.00 0.00 4.09
1887 2429 1.705186 TCTAAACCCTGCCTTCAAGCT 59.295 47.619 0.00 0.00 0.00 3.74
1888 2430 1.813178 GTCTAAACCCTGCCTTCAAGC 59.187 52.381 0.00 0.00 0.00 4.01
1889 2431 3.140325 TGTCTAAACCCTGCCTTCAAG 57.860 47.619 0.00 0.00 0.00 3.02
1891 2433 3.586470 TTTGTCTAAACCCTGCCTTCA 57.414 42.857 0.00 0.00 0.00 3.02
1909 2591 2.282462 CTGCCCTCGCCTGGTTTT 60.282 61.111 0.00 0.00 0.00 2.43
1930 2612 7.336931 TCTTTAGTTCCAATAGAAATGGCAGAC 59.663 37.037 0.00 0.00 37.88 3.51
1988 2684 7.120285 TGGTTTCTCTGATCTGCTAAAAAGATG 59.880 37.037 0.00 0.00 34.50 2.90
2007 2703 2.094675 GCATGCTGTATGGTGGTTTCT 58.905 47.619 11.37 0.00 37.26 2.52
2052 2778 6.597672 TGATACTTTGCCTGGTTGTATGTAAG 59.402 38.462 0.00 0.00 0.00 2.34
2054 2780 6.056090 TGATACTTTGCCTGGTTGTATGTA 57.944 37.500 0.00 0.00 0.00 2.29
2055 2781 4.917385 TGATACTTTGCCTGGTTGTATGT 58.083 39.130 0.00 0.00 0.00 2.29
2056 2782 5.163622 CCTTGATACTTTGCCTGGTTGTATG 60.164 44.000 0.00 0.00 0.00 2.39
2057 2783 4.949856 CCTTGATACTTTGCCTGGTTGTAT 59.050 41.667 0.00 0.00 0.00 2.29
2089 2815 1.101049 CGTGCAGTCCCTGTTTGGTT 61.101 55.000 0.00 0.00 33.43 3.67
2090 2816 1.525995 CGTGCAGTCCCTGTTTGGT 60.526 57.895 0.00 0.00 33.43 3.67
2091 2817 2.908073 GCGTGCAGTCCCTGTTTGG 61.908 63.158 0.00 0.00 33.43 3.28
2092 2818 2.121564 CTGCGTGCAGTCCCTGTTTG 62.122 60.000 13.62 0.00 39.10 2.93
2093 2819 1.893808 CTGCGTGCAGTCCCTGTTT 60.894 57.895 13.62 0.00 39.10 2.83
2094 2820 2.281070 CTGCGTGCAGTCCCTGTT 60.281 61.111 13.62 0.00 39.10 3.16
2095 2821 4.320456 CCTGCGTGCAGTCCCTGT 62.320 66.667 19.58 0.00 42.15 4.00
2129 2855 4.385447 CAGTTGTGGTGTTTGTTTTCACTG 59.615 41.667 0.00 0.00 35.26 3.66
2144 2870 4.630894 TGTTAGCAGTTTTCAGTTGTGG 57.369 40.909 0.00 0.00 0.00 4.17
2146 2872 4.461081 TGGTTGTTAGCAGTTTTCAGTTGT 59.539 37.500 0.00 0.00 0.00 3.32
2152 2878 4.201881 ACTCGTTGGTTGTTAGCAGTTTTC 60.202 41.667 0.00 0.00 32.55 2.29
2255 3052 4.810345 AGGGGTTCAACCTGTTTTCATTA 58.190 39.130 6.51 0.00 38.64 1.90
2299 3096 9.924010 AGGTCAATACTCTACTAGTAGTTCATT 57.076 33.333 25.58 19.11 43.90 2.57
2307 3104 9.563748 GAGAATGTAGGTCAATACTCTACTAGT 57.436 37.037 0.00 0.00 42.62 2.57
2319 3156 2.355108 GCAGCTGGAGAATGTAGGTCAA 60.355 50.000 17.12 0.00 0.00 3.18
2326 3163 2.097825 GATTTGGCAGCTGGAGAATGT 58.902 47.619 17.12 0.00 0.00 2.71
2355 3222 6.215636 AGAAATGGTATGAACTGGTAGAGGTT 59.784 38.462 0.00 0.00 0.00 3.50
2376 3243 0.259647 CCCCAGCCATGATGGAGAAA 59.740 55.000 17.22 0.00 42.34 2.52
2385 3252 1.528542 CTCATCAGCCCCAGCCATG 60.529 63.158 0.00 0.00 41.25 3.66
2394 3261 4.343526 TGGAGATCTACTTTCTCATCAGCC 59.656 45.833 6.49 0.00 41.16 4.85
2396 3263 6.016024 CCTCTGGAGATCTACTTTCTCATCAG 60.016 46.154 6.49 0.00 41.16 2.90
2397 3264 5.832595 CCTCTGGAGATCTACTTTCTCATCA 59.167 44.000 6.49 0.00 41.16 3.07
2398 3265 5.833131 ACCTCTGGAGATCTACTTTCTCATC 59.167 44.000 6.49 0.00 41.16 2.92
2400 3267 4.952957 CACCTCTGGAGATCTACTTTCTCA 59.047 45.833 6.49 0.00 41.16 3.27
2403 3270 4.953579 ACTCACCTCTGGAGATCTACTTTC 59.046 45.833 6.49 0.00 36.26 2.62
2404 3271 4.941713 ACTCACCTCTGGAGATCTACTTT 58.058 43.478 6.49 0.00 36.26 2.66
2405 3272 4.601406 ACTCACCTCTGGAGATCTACTT 57.399 45.455 6.49 0.00 36.26 2.24
2406 3273 4.601406 AACTCACCTCTGGAGATCTACT 57.399 45.455 6.49 0.00 36.26 2.57
2407 3274 6.378848 ACTTAAACTCACCTCTGGAGATCTAC 59.621 42.308 0.00 0.00 36.26 2.59
2408 3275 6.494952 ACTTAAACTCACCTCTGGAGATCTA 58.505 40.000 0.00 0.00 36.26 1.98
2409 3276 5.337788 ACTTAAACTCACCTCTGGAGATCT 58.662 41.667 0.00 0.00 36.26 2.75
2410 3277 5.669164 ACTTAAACTCACCTCTGGAGATC 57.331 43.478 0.00 0.00 36.26 2.75
2411 3278 5.544176 TCAACTTAAACTCACCTCTGGAGAT 59.456 40.000 0.00 0.00 36.26 2.75
2412 3279 4.899457 TCAACTTAAACTCACCTCTGGAGA 59.101 41.667 0.00 0.00 36.26 3.71
2413 3280 5.011125 TCTCAACTTAAACTCACCTCTGGAG 59.989 44.000 0.00 0.00 38.36 3.86
2414 3281 4.899457 TCTCAACTTAAACTCACCTCTGGA 59.101 41.667 0.00 0.00 0.00 3.86
2418 3285 5.794894 TGGATCTCAACTTAAACTCACCTC 58.205 41.667 0.00 0.00 0.00 3.85
2478 3349 9.874205 ACAATTTTGGGATTTGTATCTTATGTG 57.126 29.630 0.00 0.00 31.85 3.21
2558 3429 0.261402 CCTTATTGGTGATGGGGCCA 59.739 55.000 4.39 0.00 0.00 5.36
2559 3430 1.115326 GCCTTATTGGTGATGGGGCC 61.115 60.000 0.00 0.00 38.35 5.80
2560 3431 0.396974 TGCCTTATTGGTGATGGGGC 60.397 55.000 0.00 0.00 37.28 5.80
2561 3432 2.157640 TTGCCTTATTGGTGATGGGG 57.842 50.000 0.00 0.00 38.35 4.96
2562 3433 4.039124 GGTTATTGCCTTATTGGTGATGGG 59.961 45.833 0.00 0.00 38.35 4.00
2564 3435 4.648762 TGGGTTATTGCCTTATTGGTGATG 59.351 41.667 0.00 0.00 38.35 3.07
2565 3436 4.877773 TGGGTTATTGCCTTATTGGTGAT 58.122 39.130 0.00 0.00 38.35 3.06
2566 3437 4.323569 TGGGTTATTGCCTTATTGGTGA 57.676 40.909 0.00 0.00 38.35 4.02
2568 3439 5.142806 AGATGGGTTATTGCCTTATTGGT 57.857 39.130 0.00 0.00 38.35 3.67
2569 3440 8.739972 GTTATAGATGGGTTATTGCCTTATTGG 58.260 37.037 0.00 0.00 39.35 3.16
2570 3441 9.520515 AGTTATAGATGGGTTATTGCCTTATTG 57.479 33.333 0.00 0.00 0.00 1.90
2612 3483 7.696992 TTGTAAAGGGGTTATTTCTGTGATC 57.303 36.000 0.00 0.00 0.00 2.92
2633 3504 6.591935 TCTTCTGTGAATACCTGTCTTTTGT 58.408 36.000 0.00 0.00 0.00 2.83
2639 3510 7.341445 ACTATCTCTTCTGTGAATACCTGTC 57.659 40.000 0.00 0.00 0.00 3.51
2689 3560 1.134818 ACGGAGCATTGACAGCGAATA 60.135 47.619 0.00 0.00 37.01 1.75
2707 3578 4.590850 TCATGACCATCAGGATCTAACG 57.409 45.455 0.00 0.00 31.68 3.18
2750 3621 8.181904 AGGGTAATCATCAATCGCAATTAATT 57.818 30.769 0.00 0.00 0.00 1.40
2752 3623 7.068103 ACAAGGGTAATCATCAATCGCAATTAA 59.932 33.333 0.00 0.00 0.00 1.40
2807 3678 2.268076 GCCGACCATTGCACCAACT 61.268 57.895 0.00 0.00 0.00 3.16
2890 3761 5.463392 CCAGTCATCAATTCACGTAGTATGG 59.537 44.000 0.00 0.00 41.61 2.74
2932 3812 2.995836 TGGCAAAGGCAAATGGCACAT 61.996 47.619 9.77 0.00 45.76 3.21
3121 4005 0.881118 GCAAGATTCGTCCCAAGCAA 59.119 50.000 0.00 0.00 0.00 3.91
3134 4018 3.639094 CCTGTACAGTAGCCTAGCAAGAT 59.361 47.826 21.18 0.00 0.00 2.40
3142 4026 0.325390 GGACCCCTGTACAGTAGCCT 60.325 60.000 21.18 0.00 0.00 4.58
3201 4085 0.390866 AGCATGAAGAGTCAGGTGCG 60.391 55.000 0.00 0.00 42.27 5.34
3411 4295 6.979817 CAGATGAAACTGTCAATTTCAAACCA 59.020 34.615 12.99 0.00 46.26 3.67
3473 4357 2.499693 TCGTTGCTCCAATGATGTAGGA 59.500 45.455 0.00 0.00 34.89 2.94
3497 4381 1.024579 ATAACCAAAGAGCGCCACGG 61.025 55.000 2.29 0.00 0.00 4.94
3621 4505 0.109342 AGGAGGAACACACAAGGCAG 59.891 55.000 0.00 0.00 0.00 4.85
3753 4639 7.604164 AGGTACATTCATTTCTGTGACAAGTAG 59.396 37.037 0.00 0.00 0.00 2.57
3762 4648 9.444600 AATACGTTTAGGTACATTCATTTCTGT 57.555 29.630 0.00 0.00 0.00 3.41
3828 4719 0.754472 CCTCCGCCCCGAATTACTTA 59.246 55.000 0.00 0.00 0.00 2.24
3841 4732 1.941668 GCTTGCATATACTCCCTCCGC 60.942 57.143 0.00 0.00 0.00 5.54
3955 4846 9.886132 AACTTCATAACGAAAACCTAGTATGAT 57.114 29.630 0.00 0.00 31.71 2.45
3961 4852 8.936864 AGAATGAACTTCATAACGAAAACCTAG 58.063 33.333 4.65 0.00 35.76 3.02
4068 4959 5.332106 TCTCAGTAGCCTCTCCAGATATT 57.668 43.478 0.00 0.00 0.00 1.28
4163 5054 5.468072 CGCCTGCATAAGAATAAGAGATTGT 59.532 40.000 0.00 0.00 0.00 2.71
4186 5077 2.094906 TCCTGAACTGATTCCACGTACG 60.095 50.000 15.01 15.01 33.49 3.67
4351 5242 3.315949 GGCCGACACCCACCTGTA 61.316 66.667 0.00 0.00 0.00 2.74
4494 5408 8.390921 TGAAGTTTAGGGGAAGAACAATTAGAT 58.609 33.333 0.00 0.00 0.00 1.98
4496 5410 7.121315 CCTGAAGTTTAGGGGAAGAACAATTAG 59.879 40.741 5.77 0.00 0.00 1.73
4602 5516 1.019673 ATTGATACAGCCAGCAAGCG 58.980 50.000 0.00 0.00 38.01 4.68
4707 5621 6.820656 CAGCTCAGTTTTGAAGTATCCATACT 59.179 38.462 0.00 0.00 45.04 2.12
4963 6256 4.580580 AGCCAGAACTTCTAAAAACTGTGG 59.419 41.667 0.00 0.00 0.00 4.17
4967 6260 4.793201 ACCAGCCAGAACTTCTAAAAACT 58.207 39.130 0.00 0.00 0.00 2.66
5037 6769 8.633561 TCTGAGAAATACGAACTATGTGATGAT 58.366 33.333 0.00 0.00 0.00 2.45
5062 6794 2.709475 GCATCCATTGACGCGGTC 59.291 61.111 12.47 6.39 0.00 4.79
5211 6949 3.378512 AGAGCCTCATACATGGAAGTCA 58.621 45.455 0.00 0.00 0.00 3.41
5273 7011 8.673626 TTTATTTTTGTCGATTTGATCTGCTC 57.326 30.769 0.00 0.00 0.00 4.26
5307 7045 6.915300 TGAAATGTAAATTCAGGTCACGTTTG 59.085 34.615 0.00 0.00 33.15 2.93
5517 7256 5.596361 AGATGTCTAGGTGGTGATGAACTAG 59.404 44.000 0.00 0.00 34.03 2.57
5715 7455 4.103311 GGCTCCTTACAGATTACCAGGAAT 59.897 45.833 0.00 0.00 33.13 3.01
5881 7621 1.002430 TGCTTACCTGCAGAGTTCCAG 59.998 52.381 17.39 9.29 38.12 3.86
5984 7724 6.112058 TCCAAACATATTTTTGCTAATGGGC 58.888 36.000 8.55 0.00 35.48 5.36
6238 7978 7.507829 CCATTAGTGATTCTTGGATCTCTTCT 58.492 38.462 0.00 0.00 33.38 2.85
6256 7996 0.748005 GTCATGTGCCGGCCATTAGT 60.748 55.000 26.77 3.36 0.00 2.24
6277 8017 5.070446 CCATACATAGTGCTCCCTCTTAACA 59.930 44.000 0.00 0.00 0.00 2.41
6290 8030 1.220529 CGTGCCAGCCATACATAGTG 58.779 55.000 0.00 0.00 0.00 2.74
6355 8095 4.202070 ACACGGGAATTTACAACACAAAGG 60.202 41.667 0.00 0.00 0.00 3.11
6362 8102 4.572909 AGAGGTACACGGGAATTTACAAC 58.427 43.478 0.00 0.00 0.00 3.32
6489 8229 3.260380 AGGCTAGTGTCAGGATATCATGC 59.740 47.826 12.50 8.39 0.00 4.06
6504 8244 1.982073 GATGCGCGCAAAAGGCTAGT 61.982 55.000 39.68 18.85 41.67 2.57
6505 8245 1.297893 GATGCGCGCAAAAGGCTAG 60.298 57.895 39.68 0.00 41.67 3.42
6506 8246 1.581727 TTGATGCGCGCAAAAGGCTA 61.582 50.000 39.68 17.96 41.67 3.93
6507 8247 2.918345 TTGATGCGCGCAAAAGGCT 61.918 52.632 39.68 21.48 41.67 4.58
6508 8248 2.430582 TTGATGCGCGCAAAAGGC 60.431 55.556 39.68 23.47 39.90 4.35
6509 8249 2.427765 CGTTGATGCGCGCAAAAGG 61.428 57.895 39.68 31.73 0.00 3.11
6510 8250 0.996229 TTCGTTGATGCGCGCAAAAG 60.996 50.000 39.68 28.57 0.00 2.27
6512 8252 0.444260 TATTCGTTGATGCGCGCAAA 59.556 45.000 39.68 26.20 0.00 3.68
6514 8254 0.042274 CATATTCGTTGATGCGCGCA 60.042 50.000 38.27 38.27 0.00 6.09
6515 8255 0.232046 TCATATTCGTTGATGCGCGC 59.768 50.000 27.26 27.26 0.00 6.86
6517 8257 3.029074 GTGTTCATATTCGTTGATGCGC 58.971 45.455 0.00 0.00 0.00 6.09
6519 8259 5.809464 TGATGTGTTCATATTCGTTGATGC 58.191 37.500 0.00 0.00 34.06 3.91
6522 8268 5.291858 GCTCTGATGTGTTCATATTCGTTGA 59.708 40.000 0.00 0.00 34.06 3.18
6529 8275 7.338703 ACAAAAGATGCTCTGATGTGTTCATAT 59.661 33.333 0.00 0.00 34.06 1.78
6638 8385 3.504906 CACCAGAAAGCACATGAACTCAT 59.495 43.478 0.00 0.00 36.96 2.90
6684 8431 4.214119 GGCCCTTTCTTTTTGATTCTTTGC 59.786 41.667 0.00 0.00 0.00 3.68
6804 8554 1.264288 GCTCAGAGTTGGGTTTGTTCG 59.736 52.381 0.00 0.00 0.00 3.95
6919 8669 8.533569 TGATTGATTATGGAGTGTAGAGTACA 57.466 34.615 0.00 0.00 36.08 2.90
7018 8768 3.078837 GGAACTTCAAGCGGGTCATAAA 58.921 45.455 0.00 0.00 0.00 1.40
7038 8788 2.124693 GGACTCTCCTGAGCTCGGG 61.125 68.421 32.64 32.64 43.85 5.14
7105 8855 3.626670 GCTGAGTTGATTTATCTGCTGCT 59.373 43.478 0.00 0.00 35.68 4.24
7192 8953 1.007502 GTGCCACGCAGCAAATTCA 60.008 52.632 0.96 0.00 46.19 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.