Multiple sequence alignment - TraesCS6B01G362100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G362100 chr6B 100.000 2192 0 0 1 2192 633857644 633859835 0.000000e+00 4048.0
1 TraesCS6B01G362100 chr6B 100.000 605 0 0 2478 3082 633860121 633860725 0.000000e+00 1118.0
2 TraesCS6B01G362100 chr6D 91.703 1832 86 26 420 2192 420693195 420695019 0.000000e+00 2481.0
3 TraesCS6B01G362100 chr6D 89.294 439 44 2 2647 3082 420695664 420696102 5.810000e-152 547.0
4 TraesCS6B01G362100 chr6D 85.366 492 44 9 923 1413 406620333 406619869 4.620000e-133 484.0
5 TraesCS6B01G362100 chr6D 88.390 267 27 3 2818 3082 420695345 420695609 4.960000e-83 318.0
6 TraesCS6B01G362100 chr6D 86.505 289 31 6 2478 2761 420695060 420695345 8.300000e-81 311.0
7 TraesCS6B01G362100 chr6A 95.507 1291 47 4 911 2192 563539311 563540599 0.000000e+00 2052.0
8 TraesCS6B01G362100 chr6A 87.361 269 28 4 2818 3082 563541089 563541355 1.390000e-78 303.0
9 TraesCS6B01G362100 chr6A 81.250 416 26 11 542 923 563538024 563538421 3.890000e-74 289.0
10 TraesCS6B01G362100 chr5A 82.624 1105 152 28 1001 2081 677485996 677484908 0.000000e+00 941.0
11 TraesCS6B01G362100 chr4D 81.998 1111 156 29 1001 2082 497224399 497223304 0.000000e+00 904.0
12 TraesCS6B01G362100 chr4D 81.991 1105 161 22 1001 2082 497241124 497240035 0.000000e+00 904.0
13 TraesCS6B01G362100 chr4D 92.617 298 18 4 126 422 24698566 24698860 2.840000e-115 425.0
14 TraesCS6B01G362100 chr4D 95.312 128 4 1 1 128 24698381 24698506 5.210000e-48 202.0
15 TraesCS6B01G362100 chr4B 79.781 1098 162 37 1001 2082 638148327 638147274 0.000000e+00 743.0
16 TraesCS6B01G362100 chr4B 80.154 650 98 18 1456 2082 638175607 638174966 1.010000e-124 457.0
17 TraesCS6B01G362100 chr4B 88.438 320 32 4 1001 1319 638181320 638181005 6.240000e-102 381.0
18 TraesCS6B01G362100 chr7A 85.574 305 34 7 126 422 431252284 431252586 8.300000e-81 311.0
19 TraesCS6B01G362100 chr7D 86.486 74 9 1 2713 2786 123795338 123795266 2.550000e-11 80.5
20 TraesCS6B01G362100 chr2D 91.525 59 3 2 1 59 16063657 16063601 2.550000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G362100 chr6B 633857644 633860725 3081 False 2583.000000 4048 100.000000 1 3082 2 chr6B.!!$F1 3081
1 TraesCS6B01G362100 chr6D 420693195 420696102 2907 False 914.250000 2481 88.973000 420 3082 4 chr6D.!!$F1 2662
2 TraesCS6B01G362100 chr6A 563538024 563541355 3331 False 881.333333 2052 88.039333 542 3082 3 chr6A.!!$F1 2540
3 TraesCS6B01G362100 chr5A 677484908 677485996 1088 True 941.000000 941 82.624000 1001 2081 1 chr5A.!!$R1 1080
4 TraesCS6B01G362100 chr4D 497223304 497224399 1095 True 904.000000 904 81.998000 1001 2082 1 chr4D.!!$R1 1081
5 TraesCS6B01G362100 chr4D 497240035 497241124 1089 True 904.000000 904 81.991000 1001 2082 1 chr4D.!!$R2 1081
6 TraesCS6B01G362100 chr4B 638147274 638148327 1053 True 743.000000 743 79.781000 1001 2082 1 chr4B.!!$R1 1081
7 TraesCS6B01G362100 chr4B 638174966 638175607 641 True 457.000000 457 80.154000 1456 2082 1 chr4B.!!$R2 626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 181 0.035317 CAGCACTGTACTTGGGCTCA 59.965 55.0 12.12 0.0 31.3 4.26 F
582 583 0.105593 GATGAGGAGCTGGAATCGCA 59.894 55.0 0.00 0.0 0.0 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1128 2073 0.830648 ACATGTCGATGACGGGGATT 59.169 50.0 0.0 0.0 40.21 3.01 R
2524 3673 0.178301 TGTTCTGTGGCGTGTGGTTA 59.822 50.0 0.0 0.0 0.00 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.610040 AAGAGGTATGCAATGTGACGA 57.390 42.857 0.00 0.00 0.00 4.20
21 22 3.610040 AGAGGTATGCAATGTGACGAA 57.390 42.857 0.00 0.00 0.00 3.85
22 23 3.262420 AGAGGTATGCAATGTGACGAAC 58.738 45.455 0.00 0.00 0.00 3.95
23 24 3.000041 GAGGTATGCAATGTGACGAACA 59.000 45.455 0.00 0.00 44.79 3.18
24 25 3.407698 AGGTATGCAATGTGACGAACAA 58.592 40.909 0.00 0.00 43.61 2.83
25 26 3.436704 AGGTATGCAATGTGACGAACAAG 59.563 43.478 0.00 0.00 43.61 3.16
26 27 3.435327 GGTATGCAATGTGACGAACAAGA 59.565 43.478 0.00 0.00 43.61 3.02
27 28 3.818961 ATGCAATGTGACGAACAAGAG 57.181 42.857 0.00 0.00 43.61 2.85
28 29 2.560504 TGCAATGTGACGAACAAGAGT 58.439 42.857 0.00 0.00 43.61 3.24
29 30 3.723260 TGCAATGTGACGAACAAGAGTA 58.277 40.909 0.00 0.00 43.61 2.59
30 31 4.123506 TGCAATGTGACGAACAAGAGTAA 58.876 39.130 0.00 0.00 43.61 2.24
31 32 4.211164 TGCAATGTGACGAACAAGAGTAAG 59.789 41.667 0.00 0.00 43.61 2.34
32 33 4.702392 CAATGTGACGAACAAGAGTAAGC 58.298 43.478 0.00 0.00 43.61 3.09
33 34 3.728076 TGTGACGAACAAGAGTAAGCT 57.272 42.857 0.00 0.00 35.24 3.74
34 35 3.639538 TGTGACGAACAAGAGTAAGCTC 58.360 45.455 0.00 0.00 36.53 4.09
35 36 3.067601 TGTGACGAACAAGAGTAAGCTCA 59.932 43.478 0.00 0.00 37.81 4.26
36 37 4.238514 GTGACGAACAAGAGTAAGCTCAT 58.761 43.478 0.00 0.00 44.00 2.90
37 38 4.324936 GTGACGAACAAGAGTAAGCTCATC 59.675 45.833 0.00 0.00 44.00 2.92
38 39 4.022329 TGACGAACAAGAGTAAGCTCATCA 60.022 41.667 0.00 0.00 44.00 3.07
39 40 4.883083 ACGAACAAGAGTAAGCTCATCAA 58.117 39.130 0.00 0.00 44.00 2.57
40 41 4.926238 ACGAACAAGAGTAAGCTCATCAAG 59.074 41.667 0.00 0.00 44.00 3.02
54 55 5.556355 CTCATCAAGCAAAATAGCTGTCA 57.444 39.130 0.00 0.00 45.89 3.58
55 56 5.556355 TCATCAAGCAAAATAGCTGTCAG 57.444 39.130 0.00 0.00 45.89 3.51
56 57 5.005740 TCATCAAGCAAAATAGCTGTCAGT 58.994 37.500 0.00 0.00 45.89 3.41
57 58 5.474532 TCATCAAGCAAAATAGCTGTCAGTT 59.525 36.000 0.00 0.00 45.89 3.16
58 59 5.772825 TCAAGCAAAATAGCTGTCAGTTT 57.227 34.783 0.00 0.00 45.89 2.66
59 60 5.522456 TCAAGCAAAATAGCTGTCAGTTTG 58.478 37.500 0.00 0.00 45.89 2.93
60 61 5.067674 TCAAGCAAAATAGCTGTCAGTTTGT 59.932 36.000 12.62 1.65 45.89 2.83
61 62 5.113502 AGCAAAATAGCTGTCAGTTTGTC 57.886 39.130 12.62 7.33 44.66 3.18
62 63 4.580167 AGCAAAATAGCTGTCAGTTTGTCA 59.420 37.500 12.62 0.00 44.66 3.58
63 64 4.676924 GCAAAATAGCTGTCAGTTTGTCAC 59.323 41.667 12.62 0.00 32.89 3.67
64 65 5.215160 CAAAATAGCTGTCAGTTTGTCACC 58.785 41.667 0.00 0.00 0.00 4.02
65 66 4.357918 AATAGCTGTCAGTTTGTCACCT 57.642 40.909 0.00 0.00 0.00 4.00
66 67 2.717639 AGCTGTCAGTTTGTCACCTT 57.282 45.000 0.93 0.00 0.00 3.50
67 68 3.838244 AGCTGTCAGTTTGTCACCTTA 57.162 42.857 0.93 0.00 0.00 2.69
68 69 3.733337 AGCTGTCAGTTTGTCACCTTAG 58.267 45.455 0.93 0.00 0.00 2.18
69 70 2.224314 GCTGTCAGTTTGTCACCTTAGC 59.776 50.000 0.93 0.00 0.00 3.09
70 71 3.466836 CTGTCAGTTTGTCACCTTAGCA 58.533 45.455 0.00 0.00 0.00 3.49
71 72 3.876914 CTGTCAGTTTGTCACCTTAGCAA 59.123 43.478 0.00 0.00 0.00 3.91
72 73 4.265893 TGTCAGTTTGTCACCTTAGCAAA 58.734 39.130 0.00 0.00 0.00 3.68
73 74 4.702612 TGTCAGTTTGTCACCTTAGCAAAA 59.297 37.500 0.00 0.00 34.47 2.44
74 75 5.359576 TGTCAGTTTGTCACCTTAGCAAAAT 59.640 36.000 0.00 0.00 34.47 1.82
75 76 6.127479 TGTCAGTTTGTCACCTTAGCAAAATT 60.127 34.615 0.00 0.00 34.47 1.82
76 77 6.417930 GTCAGTTTGTCACCTTAGCAAAATTC 59.582 38.462 0.00 0.00 34.47 2.17
77 78 6.096141 TCAGTTTGTCACCTTAGCAAAATTCA 59.904 34.615 0.00 0.00 34.47 2.57
78 79 6.756074 CAGTTTGTCACCTTAGCAAAATTCAA 59.244 34.615 0.00 0.00 34.47 2.69
79 80 7.439056 CAGTTTGTCACCTTAGCAAAATTCAAT 59.561 33.333 0.00 0.00 34.47 2.57
80 81 7.653311 AGTTTGTCACCTTAGCAAAATTCAATC 59.347 33.333 0.00 0.00 34.47 2.67
81 82 6.647334 TGTCACCTTAGCAAAATTCAATCA 57.353 33.333 0.00 0.00 0.00 2.57
82 83 7.230849 TGTCACCTTAGCAAAATTCAATCAT 57.769 32.000 0.00 0.00 0.00 2.45
83 84 8.347004 TGTCACCTTAGCAAAATTCAATCATA 57.653 30.769 0.00 0.00 0.00 2.15
84 85 8.461222 TGTCACCTTAGCAAAATTCAATCATAG 58.539 33.333 0.00 0.00 0.00 2.23
85 86 8.462016 GTCACCTTAGCAAAATTCAATCATAGT 58.538 33.333 0.00 0.00 0.00 2.12
86 87 8.461222 TCACCTTAGCAAAATTCAATCATAGTG 58.539 33.333 0.00 0.00 0.00 2.74
87 88 8.461222 CACCTTAGCAAAATTCAATCATAGTGA 58.539 33.333 0.00 0.00 0.00 3.41
88 89 8.462016 ACCTTAGCAAAATTCAATCATAGTGAC 58.538 33.333 0.00 0.00 0.00 3.67
89 90 8.680903 CCTTAGCAAAATTCAATCATAGTGACT 58.319 33.333 0.00 0.00 0.00 3.41
93 94 9.399797 AGCAAAATTCAATCATAGTGACTATCA 57.600 29.630 1.33 0.00 0.00 2.15
108 109 6.898041 GTGACTATCACTGCAATTAACAACA 58.102 36.000 1.64 0.00 43.73 3.33
109 110 7.359595 GTGACTATCACTGCAATTAACAACAA 58.640 34.615 1.64 0.00 43.73 2.83
110 111 7.860373 GTGACTATCACTGCAATTAACAACAAA 59.140 33.333 1.64 0.00 43.73 2.83
111 112 8.075574 TGACTATCACTGCAATTAACAACAAAG 58.924 33.333 0.00 0.00 0.00 2.77
112 113 8.165239 ACTATCACTGCAATTAACAACAAAGA 57.835 30.769 0.00 0.00 0.00 2.52
113 114 8.292448 ACTATCACTGCAATTAACAACAAAGAG 58.708 33.333 0.00 0.00 0.00 2.85
114 115 5.280945 TCACTGCAATTAACAACAAAGAGC 58.719 37.500 0.00 0.00 0.00 4.09
115 116 5.042593 CACTGCAATTAACAACAAAGAGCA 58.957 37.500 0.00 0.00 0.00 4.26
116 117 5.693104 CACTGCAATTAACAACAAAGAGCAT 59.307 36.000 0.00 0.00 0.00 3.79
117 118 6.862608 CACTGCAATTAACAACAAAGAGCATA 59.137 34.615 0.00 0.00 0.00 3.14
118 119 7.543172 CACTGCAATTAACAACAAAGAGCATAT 59.457 33.333 0.00 0.00 0.00 1.78
119 120 8.739039 ACTGCAATTAACAACAAAGAGCATATA 58.261 29.630 0.00 0.00 0.00 0.86
120 121 8.909708 TGCAATTAACAACAAAGAGCATATAC 57.090 30.769 0.00 0.00 0.00 1.47
121 122 8.739039 TGCAATTAACAACAAAGAGCATATACT 58.261 29.630 0.00 0.00 0.00 2.12
122 123 9.226345 GCAATTAACAACAAAGAGCATATACTC 57.774 33.333 0.00 0.00 36.91 2.59
125 126 6.428385 AACAACAAAGAGCATATACTCAGC 57.572 37.500 5.74 0.00 39.26 4.26
126 127 4.878397 ACAACAAAGAGCATATACTCAGCC 59.122 41.667 5.74 0.00 39.26 4.85
127 128 5.121811 CAACAAAGAGCATATACTCAGCCT 58.878 41.667 5.74 0.00 39.26 4.58
128 129 4.701765 ACAAAGAGCATATACTCAGCCTG 58.298 43.478 5.74 0.00 39.26 4.85
129 130 4.063689 CAAAGAGCATATACTCAGCCTGG 58.936 47.826 5.74 0.00 39.26 4.45
130 131 3.251016 AGAGCATATACTCAGCCTGGA 57.749 47.619 5.74 0.00 39.26 3.86
131 132 3.581101 AGAGCATATACTCAGCCTGGAA 58.419 45.455 5.74 0.00 39.26 3.53
132 133 3.323403 AGAGCATATACTCAGCCTGGAAC 59.677 47.826 5.74 0.00 39.26 3.62
133 134 3.312890 AGCATATACTCAGCCTGGAACT 58.687 45.455 0.00 0.00 0.00 3.01
134 135 4.483950 AGCATATACTCAGCCTGGAACTA 58.516 43.478 0.00 0.00 0.00 2.24
135 136 4.901849 AGCATATACTCAGCCTGGAACTAA 59.098 41.667 0.00 0.00 0.00 2.24
136 137 5.366768 AGCATATACTCAGCCTGGAACTAAA 59.633 40.000 0.00 0.00 0.00 1.85
137 138 6.055588 GCATATACTCAGCCTGGAACTAAAA 58.944 40.000 0.00 0.00 0.00 1.52
138 139 6.203723 GCATATACTCAGCCTGGAACTAAAAG 59.796 42.308 0.00 0.00 0.00 2.27
139 140 7.500992 CATATACTCAGCCTGGAACTAAAAGA 58.499 38.462 0.00 0.00 0.00 2.52
140 141 4.706842 ACTCAGCCTGGAACTAAAAGAA 57.293 40.909 0.00 0.00 0.00 2.52
141 142 5.248380 ACTCAGCCTGGAACTAAAAGAAT 57.752 39.130 0.00 0.00 0.00 2.40
142 143 5.635120 ACTCAGCCTGGAACTAAAAGAATT 58.365 37.500 0.00 0.00 0.00 2.17
143 144 5.474876 ACTCAGCCTGGAACTAAAAGAATTG 59.525 40.000 0.00 0.00 0.00 2.32
144 145 4.218417 TCAGCCTGGAACTAAAAGAATTGC 59.782 41.667 0.00 0.00 0.00 3.56
145 146 4.022068 CAGCCTGGAACTAAAAGAATTGCA 60.022 41.667 0.00 0.00 0.00 4.08
146 147 4.219288 AGCCTGGAACTAAAAGAATTGCAG 59.781 41.667 0.00 0.00 40.37 4.41
148 149 4.488879 CTGGAACTAAAAGAATTGCAGGC 58.511 43.478 0.00 0.00 37.93 4.85
149 150 3.057596 TGGAACTAAAAGAATTGCAGGCG 60.058 43.478 0.00 0.00 0.00 5.52
150 151 3.501950 GAACTAAAAGAATTGCAGGCGG 58.498 45.455 0.00 0.00 0.00 6.13
151 152 1.202348 ACTAAAAGAATTGCAGGCGGC 59.798 47.619 0.00 0.00 45.13 6.53
152 153 0.530288 TAAAAGAATTGCAGGCGGCC 59.470 50.000 12.11 12.11 43.89 6.13
153 154 1.187567 AAAAGAATTGCAGGCGGCCT 61.188 50.000 17.69 17.69 43.89 5.19
154 155 1.187567 AAAGAATTGCAGGCGGCCTT 61.188 50.000 21.26 3.84 43.89 4.35
155 156 0.323360 AAGAATTGCAGGCGGCCTTA 60.323 50.000 21.26 8.89 43.89 2.69
156 157 0.749454 AGAATTGCAGGCGGCCTTAG 60.749 55.000 21.26 10.69 43.89 2.18
157 158 0.748005 GAATTGCAGGCGGCCTTAGA 60.748 55.000 21.26 8.17 43.89 2.10
158 159 0.106519 AATTGCAGGCGGCCTTAGAT 60.107 50.000 21.26 10.28 43.89 1.98
159 160 0.820891 ATTGCAGGCGGCCTTAGATG 60.821 55.000 21.26 10.02 43.89 2.90
160 161 2.592861 GCAGGCGGCCTTAGATGG 60.593 66.667 21.26 8.21 36.11 3.51
169 170 3.869623 CCTTAGATGGCAGCACTGT 57.130 52.632 5.19 0.00 0.00 3.55
170 171 2.988010 CCTTAGATGGCAGCACTGTA 57.012 50.000 5.19 0.00 0.00 2.74
171 172 2.555199 CCTTAGATGGCAGCACTGTAC 58.445 52.381 5.19 0.00 0.00 2.90
172 173 2.169352 CCTTAGATGGCAGCACTGTACT 59.831 50.000 5.19 0.00 0.00 2.73
173 174 3.369892 CCTTAGATGGCAGCACTGTACTT 60.370 47.826 5.19 0.00 0.00 2.24
174 175 2.105006 AGATGGCAGCACTGTACTTG 57.895 50.000 5.19 0.00 0.00 3.16
175 176 1.089920 GATGGCAGCACTGTACTTGG 58.910 55.000 0.00 0.00 0.00 3.61
176 177 0.322816 ATGGCAGCACTGTACTTGGG 60.323 55.000 0.00 0.00 0.00 4.12
177 178 2.335712 GGCAGCACTGTACTTGGGC 61.336 63.158 5.71 5.71 0.00 5.36
178 179 1.302832 GCAGCACTGTACTTGGGCT 60.303 57.895 9.78 9.78 34.64 5.19
179 180 1.301677 GCAGCACTGTACTTGGGCTC 61.302 60.000 12.12 5.66 31.30 4.70
180 181 0.035317 CAGCACTGTACTTGGGCTCA 59.965 55.000 12.12 0.00 31.30 4.26
181 182 0.764890 AGCACTGTACTTGGGCTCAA 59.235 50.000 9.78 0.00 0.00 3.02
191 192 2.787473 TTGGGCTCAAGAGTACCATG 57.213 50.000 13.65 0.00 37.41 3.66
192 193 0.911769 TGGGCTCAAGAGTACCATGG 59.088 55.000 11.19 11.19 34.37 3.66
193 194 0.912486 GGGCTCAAGAGTACCATGGT 59.088 55.000 23.55 23.55 0.00 3.55
194 195 1.282157 GGGCTCAAGAGTACCATGGTT 59.718 52.381 25.38 5.54 0.00 3.67
195 196 2.504175 GGGCTCAAGAGTACCATGGTTA 59.496 50.000 25.38 6.32 0.00 2.85
196 197 3.532542 GGCTCAAGAGTACCATGGTTAC 58.467 50.000 25.38 18.02 0.00 2.50
197 198 3.532542 GCTCAAGAGTACCATGGTTACC 58.467 50.000 25.38 11.65 0.00 2.85
198 199 3.197983 GCTCAAGAGTACCATGGTTACCT 59.802 47.826 25.38 16.46 0.00 3.08
199 200 4.323562 GCTCAAGAGTACCATGGTTACCTT 60.324 45.833 25.38 19.06 0.00 3.50
200 201 5.160607 TCAAGAGTACCATGGTTACCTTG 57.839 43.478 28.52 28.52 32.77 3.61
208 209 3.652057 CATGGTTACCTTGGAGGACAT 57.348 47.619 9.16 0.00 37.67 3.06
209 210 3.282021 CATGGTTACCTTGGAGGACATG 58.718 50.000 9.16 6.25 37.67 3.21
210 211 2.344592 TGGTTACCTTGGAGGACATGT 58.655 47.619 0.00 0.00 37.67 3.21
211 212 3.522759 TGGTTACCTTGGAGGACATGTA 58.477 45.455 0.00 0.00 37.67 2.29
212 213 4.108570 TGGTTACCTTGGAGGACATGTAT 58.891 43.478 0.00 0.00 37.67 2.29
213 214 5.282129 TGGTTACCTTGGAGGACATGTATA 58.718 41.667 0.00 0.00 37.67 1.47
214 215 5.727279 TGGTTACCTTGGAGGACATGTATAA 59.273 40.000 0.00 0.00 37.67 0.98
215 216 6.215841 TGGTTACCTTGGAGGACATGTATAAA 59.784 38.462 0.00 0.00 37.67 1.40
216 217 7.114095 GGTTACCTTGGAGGACATGTATAAAA 58.886 38.462 0.00 0.00 37.67 1.52
217 218 7.282450 GGTTACCTTGGAGGACATGTATAAAAG 59.718 40.741 0.00 0.00 37.67 2.27
218 219 5.755849 ACCTTGGAGGACATGTATAAAAGG 58.244 41.667 18.32 18.32 37.67 3.11
219 220 5.491078 ACCTTGGAGGACATGTATAAAAGGA 59.509 40.000 23.34 0.03 37.67 3.36
220 221 6.160459 ACCTTGGAGGACATGTATAAAAGGAT 59.840 38.462 23.34 11.63 37.67 3.24
221 222 7.349859 ACCTTGGAGGACATGTATAAAAGGATA 59.650 37.037 23.34 0.00 37.67 2.59
222 223 8.217799 CCTTGGAGGACATGTATAAAAGGATAA 58.782 37.037 16.30 0.00 37.67 1.75
223 224 9.627123 CTTGGAGGACATGTATAAAAGGATAAA 57.373 33.333 0.00 0.00 0.00 1.40
273 274 9.719355 ACATTTGTCTTAAGTATACACATGTGA 57.281 29.630 31.94 15.72 40.89 3.58
274 275 9.973246 CATTTGTCTTAAGTATACACATGTGAC 57.027 33.333 31.94 19.16 30.40 3.67
275 276 9.944376 ATTTGTCTTAAGTATACACATGTGACT 57.056 29.630 31.94 21.07 0.00 3.41
276 277 8.981724 TTGTCTTAAGTATACACATGTGACTC 57.018 34.615 31.94 17.30 0.00 3.36
277 278 8.117813 TGTCTTAAGTATACACATGTGACTCA 57.882 34.615 31.94 14.68 0.00 3.41
278 279 8.749354 TGTCTTAAGTATACACATGTGACTCAT 58.251 33.333 31.94 19.04 37.22 2.90
279 280 9.587772 GTCTTAAGTATACACATGTGACTCATT 57.412 33.333 31.94 20.27 34.09 2.57
280 281 9.803315 TCTTAAGTATACACATGTGACTCATTC 57.197 33.333 31.94 15.23 34.09 2.67
281 282 9.586435 CTTAAGTATACACATGTGACTCATTCA 57.414 33.333 31.94 11.06 34.09 2.57
282 283 9.936759 TTAAGTATACACATGTGACTCATTCAA 57.063 29.630 31.94 13.00 35.39 2.69
283 284 7.834068 AGTATACACATGTGACTCATTCAAC 57.166 36.000 31.94 14.59 35.39 3.18
284 285 7.386059 AGTATACACATGTGACTCATTCAACA 58.614 34.615 31.94 2.16 35.39 3.33
285 286 4.818534 ACACATGTGACTCATTCAACAC 57.181 40.909 31.94 0.00 35.39 3.32
286 287 3.248363 ACACATGTGACTCATTCAACACG 59.752 43.478 31.94 0.00 35.39 4.49
287 288 3.248363 CACATGTGACTCATTCAACACGT 59.752 43.478 21.64 0.00 35.39 4.49
288 289 3.876914 ACATGTGACTCATTCAACACGTT 59.123 39.130 0.00 0.00 35.39 3.99
289 290 5.050431 CACATGTGACTCATTCAACACGTTA 60.050 40.000 21.64 0.00 35.39 3.18
290 291 5.525745 ACATGTGACTCATTCAACACGTTAA 59.474 36.000 0.00 0.00 35.39 2.01
291 292 6.204688 ACATGTGACTCATTCAACACGTTAAT 59.795 34.615 0.00 0.00 35.39 1.40
292 293 6.223138 TGTGACTCATTCAACACGTTAATC 57.777 37.500 0.00 0.00 35.39 1.75
293 294 5.989168 TGTGACTCATTCAACACGTTAATCT 59.011 36.000 0.00 0.00 35.39 2.40
294 295 6.073819 TGTGACTCATTCAACACGTTAATCTG 60.074 38.462 0.00 0.00 35.39 2.90
295 296 6.145534 GTGACTCATTCAACACGTTAATCTGA 59.854 38.462 0.00 0.00 35.39 3.27
296 297 6.873605 TGACTCATTCAACACGTTAATCTGAT 59.126 34.615 0.00 0.00 0.00 2.90
297 298 7.065216 ACTCATTCAACACGTTAATCTGATG 57.935 36.000 0.00 0.00 0.00 3.07
298 299 5.868257 TCATTCAACACGTTAATCTGATGC 58.132 37.500 0.00 0.00 0.00 3.91
299 300 5.411053 TCATTCAACACGTTAATCTGATGCA 59.589 36.000 0.00 0.00 0.00 3.96
300 301 4.926860 TCAACACGTTAATCTGATGCAG 57.073 40.909 0.00 0.00 0.00 4.41
301 302 3.125146 TCAACACGTTAATCTGATGCAGC 59.875 43.478 0.00 0.00 0.00 5.25
302 303 2.009774 ACACGTTAATCTGATGCAGCC 58.990 47.619 0.00 0.00 0.00 4.85
303 304 2.009051 CACGTTAATCTGATGCAGCCA 58.991 47.619 0.00 0.00 0.00 4.75
304 305 2.419673 CACGTTAATCTGATGCAGCCAA 59.580 45.455 0.00 0.00 0.00 4.52
305 306 3.065786 CACGTTAATCTGATGCAGCCAAT 59.934 43.478 0.00 0.00 0.00 3.16
306 307 4.273235 CACGTTAATCTGATGCAGCCAATA 59.727 41.667 0.00 0.00 0.00 1.90
307 308 4.881273 ACGTTAATCTGATGCAGCCAATAA 59.119 37.500 0.00 0.00 0.00 1.40
308 309 5.532406 ACGTTAATCTGATGCAGCCAATAAT 59.468 36.000 0.00 0.00 0.00 1.28
309 310 6.039717 ACGTTAATCTGATGCAGCCAATAATT 59.960 34.615 0.00 0.34 0.00 1.40
310 311 7.228507 ACGTTAATCTGATGCAGCCAATAATTA 59.771 33.333 0.00 0.00 0.00 1.40
311 312 7.747799 CGTTAATCTGATGCAGCCAATAATTAG 59.252 37.037 0.00 0.00 0.00 1.73
312 313 8.786898 GTTAATCTGATGCAGCCAATAATTAGA 58.213 33.333 0.00 0.00 0.00 2.10
313 314 9.524496 TTAATCTGATGCAGCCAATAATTAGAT 57.476 29.630 0.00 0.00 0.00 1.98
315 316 9.524496 AATCTGATGCAGCCAATAATTAGATAA 57.476 29.630 0.00 0.00 0.00 1.75
316 317 9.696572 ATCTGATGCAGCCAATAATTAGATAAT 57.303 29.630 0.00 0.00 0.00 1.28
317 318 9.524496 TCTGATGCAGCCAATAATTAGATAATT 57.476 29.630 0.00 3.50 39.14 1.40
318 319 9.784680 CTGATGCAGCCAATAATTAGATAATTC 57.215 33.333 0.00 0.00 37.16 2.17
319 320 9.299465 TGATGCAGCCAATAATTAGATAATTCA 57.701 29.630 0.00 0.00 37.16 2.57
322 323 9.081204 TGCAGCCAATAATTAGATAATTCATGT 57.919 29.630 1.18 0.00 37.16 3.21
323 324 9.350357 GCAGCCAATAATTAGATAATTCATGTG 57.650 33.333 1.18 1.06 37.16 3.21
324 325 9.850628 CAGCCAATAATTAGATAATTCATGTGG 57.149 33.333 1.18 6.61 37.16 4.17
325 326 9.812347 AGCCAATAATTAGATAATTCATGTGGA 57.188 29.630 14.48 0.00 37.16 4.02
326 327 9.846248 GCCAATAATTAGATAATTCATGTGGAC 57.154 33.333 14.48 7.31 37.16 4.02
332 333 9.927081 AATTAGATAATTCATGTGGACCTCTTT 57.073 29.630 0.00 0.00 30.50 2.52
333 334 8.737168 TTAGATAATTCATGTGGACCTCTTTG 57.263 34.615 0.00 0.00 0.00 2.77
334 335 6.725364 AGATAATTCATGTGGACCTCTTTGT 58.275 36.000 0.00 0.00 0.00 2.83
335 336 6.600822 AGATAATTCATGTGGACCTCTTTGTG 59.399 38.462 0.00 0.00 0.00 3.33
336 337 3.576078 TTCATGTGGACCTCTTTGTGT 57.424 42.857 0.00 0.00 0.00 3.72
337 338 2.849942 TCATGTGGACCTCTTTGTGTG 58.150 47.619 0.00 0.00 0.00 3.82
338 339 2.172505 TCATGTGGACCTCTTTGTGTGT 59.827 45.455 0.00 0.00 0.00 3.72
339 340 3.389656 TCATGTGGACCTCTTTGTGTGTA 59.610 43.478 0.00 0.00 0.00 2.90
340 341 3.188159 TGTGGACCTCTTTGTGTGTAC 57.812 47.619 0.00 0.00 0.00 2.90
341 342 2.502130 TGTGGACCTCTTTGTGTGTACA 59.498 45.455 0.00 0.00 34.31 2.90
342 343 2.870411 GTGGACCTCTTTGTGTGTACAC 59.130 50.000 19.36 19.36 46.59 2.90
343 344 2.769663 TGGACCTCTTTGTGTGTACACT 59.230 45.455 25.60 2.89 46.55 3.55
344 345 3.131396 GGACCTCTTTGTGTGTACACTG 58.869 50.000 25.60 11.22 46.55 3.66
345 346 3.431766 GGACCTCTTTGTGTGTACACTGT 60.432 47.826 25.60 10.20 46.55 3.55
346 347 4.202182 GGACCTCTTTGTGTGTACACTGTA 60.202 45.833 25.60 10.00 46.55 2.74
347 348 5.510861 GGACCTCTTTGTGTGTACACTGTAT 60.511 44.000 25.60 3.11 46.55 2.29
348 349 6.294899 GGACCTCTTTGTGTGTACACTGTATA 60.295 42.308 25.60 3.12 46.55 1.47
349 350 7.241042 ACCTCTTTGTGTGTACACTGTATAT 57.759 36.000 25.60 2.04 46.55 0.86
350 351 8.357290 ACCTCTTTGTGTGTACACTGTATATA 57.643 34.615 25.60 1.58 46.55 0.86
351 352 8.248945 ACCTCTTTGTGTGTACACTGTATATAC 58.751 37.037 25.60 14.26 46.55 1.47
352 353 7.705325 CCTCTTTGTGTGTACACTGTATATACC 59.295 40.741 25.60 0.00 46.55 2.73
353 354 8.357290 TCTTTGTGTGTACACTGTATATACCT 57.643 34.615 25.60 0.00 46.55 3.08
354 355 8.809066 TCTTTGTGTGTACACTGTATATACCTT 58.191 33.333 25.60 0.00 46.55 3.50
355 356 8.766000 TTTGTGTGTACACTGTATATACCTTG 57.234 34.615 25.60 9.34 46.55 3.61
356 357 7.706100 TGTGTGTACACTGTATATACCTTGA 57.294 36.000 25.60 0.00 46.55 3.02
357 358 7.768240 TGTGTGTACACTGTATATACCTTGAG 58.232 38.462 25.60 3.71 46.55 3.02
358 359 6.696148 GTGTGTACACTGTATATACCTTGAGC 59.304 42.308 25.60 6.48 43.25 4.26
359 360 5.913514 GTGTACACTGTATATACCTTGAGCG 59.086 44.000 18.92 0.00 0.00 5.03
360 361 5.591472 TGTACACTGTATATACCTTGAGCGT 59.409 40.000 10.38 4.10 0.00 5.07
361 362 4.933330 ACACTGTATATACCTTGAGCGTG 58.067 43.478 10.38 8.21 0.00 5.34
362 363 4.643334 ACACTGTATATACCTTGAGCGTGA 59.357 41.667 10.38 0.00 0.00 4.35
363 364 4.976731 CACTGTATATACCTTGAGCGTGAC 59.023 45.833 10.38 0.00 0.00 3.67
364 365 4.888239 ACTGTATATACCTTGAGCGTGACT 59.112 41.667 10.38 0.00 0.00 3.41
365 366 5.183014 TGTATATACCTTGAGCGTGACTG 57.817 43.478 10.38 0.00 0.00 3.51
366 367 4.885325 TGTATATACCTTGAGCGTGACTGA 59.115 41.667 10.38 0.00 0.00 3.41
367 368 5.358725 TGTATATACCTTGAGCGTGACTGAA 59.641 40.000 10.38 0.00 0.00 3.02
368 369 2.724977 TACCTTGAGCGTGACTGAAG 57.275 50.000 0.00 0.00 39.15 3.02
369 370 1.040646 ACCTTGAGCGTGACTGAAGA 58.959 50.000 0.00 0.00 41.72 2.87
370 371 1.620819 ACCTTGAGCGTGACTGAAGAT 59.379 47.619 0.00 0.00 41.72 2.40
371 372 2.037772 ACCTTGAGCGTGACTGAAGATT 59.962 45.455 0.00 0.00 41.72 2.40
372 373 3.070018 CCTTGAGCGTGACTGAAGATTT 58.930 45.455 0.00 0.00 41.72 2.17
373 374 3.120408 CCTTGAGCGTGACTGAAGATTTG 60.120 47.826 0.00 0.00 41.72 2.32
374 375 2.416747 TGAGCGTGACTGAAGATTTGG 58.583 47.619 0.00 0.00 0.00 3.28
375 376 2.037121 TGAGCGTGACTGAAGATTTGGA 59.963 45.455 0.00 0.00 0.00 3.53
376 377 3.265791 GAGCGTGACTGAAGATTTGGAT 58.734 45.455 0.00 0.00 0.00 3.41
377 378 3.005554 AGCGTGACTGAAGATTTGGATG 58.994 45.455 0.00 0.00 0.00 3.51
378 379 2.476854 GCGTGACTGAAGATTTGGATGC 60.477 50.000 0.00 0.00 0.00 3.91
379 380 2.096496 CGTGACTGAAGATTTGGATGCC 59.904 50.000 0.00 0.00 0.00 4.40
380 381 3.084039 GTGACTGAAGATTTGGATGCCA 58.916 45.455 0.00 0.00 0.00 4.92
381 382 3.698040 GTGACTGAAGATTTGGATGCCAT 59.302 43.478 0.00 0.00 31.53 4.40
382 383 4.159135 GTGACTGAAGATTTGGATGCCATT 59.841 41.667 0.00 0.00 31.53 3.16
383 384 4.400251 TGACTGAAGATTTGGATGCCATTC 59.600 41.667 0.00 0.00 31.53 2.67
384 385 3.703052 ACTGAAGATTTGGATGCCATTCC 59.297 43.478 0.00 0.00 31.53 3.01
385 386 3.958798 CTGAAGATTTGGATGCCATTCCT 59.041 43.478 0.00 0.00 36.68 3.36
386 387 3.702548 TGAAGATTTGGATGCCATTCCTG 59.297 43.478 0.00 0.00 36.68 3.86
387 388 2.674420 AGATTTGGATGCCATTCCTGG 58.326 47.619 0.00 0.00 46.17 4.45
388 389 2.023695 AGATTTGGATGCCATTCCTGGT 60.024 45.455 0.00 0.00 45.10 4.00
389 390 1.851304 TTTGGATGCCATTCCTGGTC 58.149 50.000 0.00 0.00 45.10 4.02
390 391 0.394216 TTGGATGCCATTCCTGGTCG 60.394 55.000 0.00 0.00 45.10 4.79
391 392 1.224592 GGATGCCATTCCTGGTCGT 59.775 57.895 0.00 0.00 45.10 4.34
392 393 1.097547 GGATGCCATTCCTGGTCGTG 61.098 60.000 0.00 0.00 45.10 4.35
393 394 0.392998 GATGCCATTCCTGGTCGTGT 60.393 55.000 0.00 0.00 45.10 4.49
394 395 0.908910 ATGCCATTCCTGGTCGTGTA 59.091 50.000 0.00 0.00 45.10 2.90
395 396 0.249120 TGCCATTCCTGGTCGTGTAG 59.751 55.000 0.00 0.00 45.10 2.74
396 397 1.090052 GCCATTCCTGGTCGTGTAGC 61.090 60.000 0.00 0.00 45.10 3.58
397 398 0.537188 CCATTCCTGGTCGTGTAGCT 59.463 55.000 0.00 0.00 37.79 3.32
398 399 1.471676 CCATTCCTGGTCGTGTAGCTC 60.472 57.143 0.00 0.00 37.79 4.09
399 400 0.824759 ATTCCTGGTCGTGTAGCTCC 59.175 55.000 0.00 0.00 0.00 4.70
400 401 1.592400 TTCCTGGTCGTGTAGCTCCG 61.592 60.000 0.00 0.00 0.00 4.63
401 402 2.490217 CTGGTCGTGTAGCTCCGG 59.510 66.667 0.00 0.00 0.00 5.14
402 403 3.701604 CTGGTCGTGTAGCTCCGGC 62.702 68.421 0.00 0.00 39.06 6.13
403 404 4.849329 GGTCGTGTAGCTCCGGCG 62.849 72.222 0.00 0.00 44.37 6.46
404 405 3.807538 GTCGTGTAGCTCCGGCGA 61.808 66.667 9.30 0.00 44.37 5.54
405 406 3.807538 TCGTGTAGCTCCGGCGAC 61.808 66.667 9.30 0.00 44.37 5.19
406 407 4.849329 CGTGTAGCTCCGGCGACC 62.849 72.222 9.30 0.00 42.13 4.79
407 408 3.755628 GTGTAGCTCCGGCGACCA 61.756 66.667 9.30 0.00 42.13 4.02
408 409 3.449227 TGTAGCTCCGGCGACCAG 61.449 66.667 9.30 1.78 42.13 4.00
431 432 3.854669 CCGAGCCTGCCCGATCTT 61.855 66.667 0.00 0.00 0.00 2.40
454 455 3.133542 TCTGGAAGACTATGGACTGCATG 59.866 47.826 0.00 0.00 38.67 4.06
497 498 1.131504 GGTTGTTGAAGACACGCACAA 59.868 47.619 0.00 0.00 38.18 3.33
513 514 0.674895 ACAACGCTCTCCTTCCATGC 60.675 55.000 0.00 0.00 0.00 4.06
522 523 1.213619 TCCTTCCATGCCATCCACCA 61.214 55.000 0.00 0.00 0.00 4.17
582 583 0.105593 GATGAGGAGCTGGAATCGCA 59.894 55.000 0.00 0.00 0.00 5.10
584 585 0.324614 TGAGGAGCTGGAATCGCAAA 59.675 50.000 0.00 0.00 0.00 3.68
589 605 1.081509 GCTGGAATCGCAAACGCAA 60.082 52.632 0.00 0.00 39.84 4.85
638 660 5.343307 TGTAGCTGCTTGATAACTGATCA 57.657 39.130 7.79 0.00 43.11 2.92
653 675 4.190001 ACTGATCATCACAAGCTCATCAC 58.810 43.478 0.00 0.00 0.00 3.06
727 750 0.243095 GTAGCGTTCCGAGTTCCACT 59.757 55.000 0.00 0.00 0.00 4.00
728 751 0.963962 TAGCGTTCCGAGTTCCACTT 59.036 50.000 0.00 0.00 0.00 3.16
729 752 0.600255 AGCGTTCCGAGTTCCACTTG 60.600 55.000 0.00 0.00 0.00 3.16
768 791 0.874607 GCGACAAGTGACGAGGTTGT 60.875 55.000 7.34 0.00 37.12 3.32
780 803 3.103911 GGTTGTCGAGTGGTCGCG 61.104 66.667 0.00 0.00 46.39 5.87
791 814 0.457337 GTGGTCGCGGTCGTAAATCT 60.457 55.000 6.13 0.00 36.96 2.40
969 1914 2.857592 TCGAGGTGCGTAAATACTCC 57.142 50.000 0.00 0.00 41.80 3.85
1157 2102 4.873129 CGACATGTCCTCGCCGGG 62.873 72.222 20.03 0.00 0.00 5.73
1213 2158 1.380302 GGCATCTTCCAGGTGGTGT 59.620 57.895 0.00 0.00 36.34 4.16
1837 2818 5.088739 GTCGCATCAACTATTTCACCTTTG 58.911 41.667 0.00 0.00 0.00 2.77
1852 2833 9.612066 ATTTCACCTTTGACATGTGTTAATTTT 57.388 25.926 1.15 0.00 0.00 1.82
2160 3147 3.326836 TCCTACATTTCATGCGTGTCA 57.673 42.857 5.68 0.00 0.00 3.58
2161 3148 3.669536 TCCTACATTTCATGCGTGTCAA 58.330 40.909 5.68 0.81 0.00 3.18
2524 3673 9.769093 GATAAAGCGACACTAAACATACAATTT 57.231 29.630 0.00 0.00 0.00 1.82
2528 3677 7.524065 AGCGACACTAAACATACAATTTAACC 58.476 34.615 0.00 0.00 0.00 2.85
2529 3678 7.173562 AGCGACACTAAACATACAATTTAACCA 59.826 33.333 0.00 0.00 0.00 3.67
2530 3679 7.269724 GCGACACTAAACATACAATTTAACCAC 59.730 37.037 0.00 0.00 0.00 4.16
2531 3680 8.283992 CGACACTAAACATACAATTTAACCACA 58.716 33.333 0.00 0.00 0.00 4.17
2532 3681 9.389570 GACACTAAACATACAATTTAACCACAC 57.610 33.333 0.00 0.00 0.00 3.82
2533 3682 8.071368 ACACTAAACATACAATTTAACCACACG 58.929 33.333 0.00 0.00 0.00 4.49
2548 3697 2.203153 ACGCCACAGAACACCACC 60.203 61.111 0.00 0.00 0.00 4.61
2551 3700 1.898574 GCCACAGAACACCACCCAG 60.899 63.158 0.00 0.00 0.00 4.45
2560 3711 1.271840 ACACCACCCAGACACACACT 61.272 55.000 0.00 0.00 0.00 3.55
2564 3715 0.532862 CACCCAGACACACACTCACC 60.533 60.000 0.00 0.00 0.00 4.02
2569 3724 1.138859 CAGACACACACTCACCCAAGA 59.861 52.381 0.00 0.00 0.00 3.02
2572 3727 1.134401 ACACACACTCACCCAAGACAG 60.134 52.381 0.00 0.00 0.00 3.51
2579 3734 3.198635 CACTCACCCAAGACAGGATACAT 59.801 47.826 0.00 0.00 41.41 2.29
2581 3736 5.030147 ACTCACCCAAGACAGGATACATAA 58.970 41.667 0.00 0.00 41.41 1.90
2595 3750 7.580562 AGGATACATAAGTGCCAAAGGCCAA 62.581 44.000 5.01 0.00 45.17 4.52
2620 3775 1.257936 CACAACACCTCAAACGACTCG 59.742 52.381 0.00 0.00 0.00 4.18
2646 3801 7.076842 AGTACACAAAATGACACTATGCATC 57.923 36.000 0.19 0.00 0.00 3.91
2648 3803 5.702865 ACACAAAATGACACTATGCATCAC 58.297 37.500 0.19 0.00 0.00 3.06
2656 3811 3.993081 GACACTATGCATCACTATGGAGC 59.007 47.826 0.19 0.00 36.82 4.70
2657 3812 3.244353 ACACTATGCATCACTATGGAGCC 60.244 47.826 0.19 0.00 36.82 4.70
2660 3815 0.541392 TGCATCACTATGGAGCCGTT 59.459 50.000 0.00 0.00 33.38 4.44
2666 3821 1.227674 CTATGGAGCCGTTGGAGCC 60.228 63.158 0.00 0.00 0.00 4.70
2672 3827 2.034221 GCCGTTGGAGCCCTTCTT 59.966 61.111 0.00 0.00 0.00 2.52
2690 3846 2.307309 TGGCGAAAGACACGCGAAG 61.307 57.895 15.93 7.57 46.72 3.79
2712 3868 1.332686 GGTGAAGAACAAACCGTGACC 59.667 52.381 0.00 0.00 0.00 4.02
2720 3876 1.617357 ACAAACCGTGACCTCCTAGAC 59.383 52.381 0.00 0.00 0.00 2.59
2722 3878 1.546961 AACCGTGACCTCCTAGACAG 58.453 55.000 0.00 0.00 0.00 3.51
2725 3881 0.171455 CGTGACCTCCTAGACAGTGC 59.829 60.000 0.00 0.00 0.00 4.40
2728 3884 1.107945 GACCTCCTAGACAGTGCCTC 58.892 60.000 0.00 0.00 0.00 4.70
2730 3886 1.388065 CCTCCTAGACAGTGCCTCCG 61.388 65.000 0.00 0.00 0.00 4.63
2770 3926 4.100084 CTGCCACCGCCTGATCCA 62.100 66.667 0.00 0.00 0.00 3.41
2771 3927 3.626996 CTGCCACCGCCTGATCCAA 62.627 63.158 0.00 0.00 0.00 3.53
2772 3928 2.361104 GCCACCGCCTGATCCAAA 60.361 61.111 0.00 0.00 0.00 3.28
2773 3929 2.409870 GCCACCGCCTGATCCAAAG 61.410 63.158 0.00 0.00 0.00 2.77
2774 3930 1.299648 CCACCGCCTGATCCAAAGA 59.700 57.895 0.00 0.00 0.00 2.52
2775 3931 0.107017 CCACCGCCTGATCCAAAGAT 60.107 55.000 0.00 0.00 34.57 2.40
2791 3947 7.779754 TCCAAAGATCAGGATTTTCATTTGA 57.220 32.000 0.00 0.00 0.00 2.69
2792 3948 8.192743 TCCAAAGATCAGGATTTTCATTTGAA 57.807 30.769 0.00 0.00 0.00 2.69
2793 3949 8.308931 TCCAAAGATCAGGATTTTCATTTGAAG 58.691 33.333 0.00 0.00 35.21 3.02
2794 3950 7.064253 CCAAAGATCAGGATTTTCATTTGAAGC 59.936 37.037 0.00 0.00 35.21 3.86
2795 3951 6.845758 AGATCAGGATTTTCATTTGAAGCA 57.154 33.333 0.00 0.00 35.21 3.91
2796 3952 7.419711 AGATCAGGATTTTCATTTGAAGCAT 57.580 32.000 0.00 0.00 35.21 3.79
2797 3953 7.265673 AGATCAGGATTTTCATTTGAAGCATG 58.734 34.615 0.00 0.00 35.21 4.06
2798 3954 6.593268 TCAGGATTTTCATTTGAAGCATGA 57.407 33.333 0.00 0.00 35.21 3.07
2799 3955 7.177832 TCAGGATTTTCATTTGAAGCATGAT 57.822 32.000 0.00 0.00 35.21 2.45
2800 3956 7.039270 TCAGGATTTTCATTTGAAGCATGATG 58.961 34.615 0.00 0.00 35.21 3.07
2801 3957 7.039270 CAGGATTTTCATTTGAAGCATGATGA 58.961 34.615 0.00 0.00 35.21 2.92
2802 3958 7.547722 CAGGATTTTCATTTGAAGCATGATGAA 59.452 33.333 0.00 0.00 36.89 2.57
2803 3959 7.764443 AGGATTTTCATTTGAAGCATGATGAAG 59.236 33.333 0.00 0.00 39.05 3.02
2804 3960 7.762615 GGATTTTCATTTGAAGCATGATGAAGA 59.237 33.333 0.00 0.00 39.05 2.87
2805 3961 9.146984 GATTTTCATTTGAAGCATGATGAAGAA 57.853 29.630 0.00 0.88 39.05 2.52
2806 3962 7.878477 TTTCATTTGAAGCATGATGAAGAAC 57.122 32.000 0.00 0.00 39.05 3.01
2807 3963 6.829229 TCATTTGAAGCATGATGAAGAACT 57.171 33.333 0.00 0.00 0.00 3.01
2808 3964 7.926674 TCATTTGAAGCATGATGAAGAACTA 57.073 32.000 0.00 0.00 0.00 2.24
2809 3965 7.982224 TCATTTGAAGCATGATGAAGAACTAG 58.018 34.615 0.00 0.00 0.00 2.57
2810 3966 6.748333 TTTGAAGCATGATGAAGAACTAGG 57.252 37.500 0.00 0.00 0.00 3.02
2811 3967 5.682234 TGAAGCATGATGAAGAACTAGGA 57.318 39.130 0.00 0.00 0.00 2.94
2812 3968 5.668471 TGAAGCATGATGAAGAACTAGGAG 58.332 41.667 0.00 0.00 0.00 3.69
2813 3969 4.070630 AGCATGATGAAGAACTAGGAGC 57.929 45.455 0.00 0.00 0.00 4.70
2814 3970 3.453717 AGCATGATGAAGAACTAGGAGCA 59.546 43.478 0.00 0.00 0.00 4.26
2815 3971 4.080695 AGCATGATGAAGAACTAGGAGCAA 60.081 41.667 0.00 0.00 0.00 3.91
2816 3972 4.820716 GCATGATGAAGAACTAGGAGCAAT 59.179 41.667 0.00 0.00 0.00 3.56
2817 3973 5.049543 GCATGATGAAGAACTAGGAGCAATC 60.050 44.000 0.00 0.00 0.00 2.67
2818 3974 5.682234 TGATGAAGAACTAGGAGCAATCA 57.318 39.130 0.00 0.00 0.00 2.57
2819 3975 5.423015 TGATGAAGAACTAGGAGCAATCAC 58.577 41.667 0.00 0.00 0.00 3.06
2820 3976 4.890158 TGAAGAACTAGGAGCAATCACA 57.110 40.909 0.00 0.00 0.00 3.58
2821 3977 5.227569 TGAAGAACTAGGAGCAATCACAA 57.772 39.130 0.00 0.00 0.00 3.33
2822 3978 4.997395 TGAAGAACTAGGAGCAATCACAAC 59.003 41.667 0.00 0.00 0.00 3.32
2823 3979 3.589988 AGAACTAGGAGCAATCACAACG 58.410 45.455 0.00 0.00 0.00 4.10
2824 3980 2.386661 ACTAGGAGCAATCACAACGG 57.613 50.000 0.00 0.00 0.00 4.44
2825 3981 1.899814 ACTAGGAGCAATCACAACGGA 59.100 47.619 0.00 0.00 0.00 4.69
2826 3982 2.093973 ACTAGGAGCAATCACAACGGAG 60.094 50.000 0.00 0.00 0.00 4.63
2835 3991 2.526304 TCACAACGGAGGACTTCAAG 57.474 50.000 0.00 0.00 0.00 3.02
2841 3997 1.344763 ACGGAGGACTTCAAGAAGGTG 59.655 52.381 13.83 0.72 42.53 4.00
2843 3999 2.610727 CGGAGGACTTCAAGAAGGTGAC 60.611 54.545 13.83 3.59 42.53 3.67
2853 4009 1.728426 GAAGGTGACGACGTCCACG 60.728 63.158 24.33 1.10 46.33 4.94
2854 4010 3.836176 AAGGTGACGACGTCCACGC 62.836 63.158 24.33 14.83 44.43 5.34
2888 4045 1.340017 GCCTGACCAAAGCCAGACATA 60.340 52.381 0.00 0.00 32.37 2.29
2889 4046 2.636830 CCTGACCAAAGCCAGACATAG 58.363 52.381 0.00 0.00 32.37 2.23
2894 4053 4.518970 TGACCAAAGCCAGACATAGTTTTC 59.481 41.667 0.00 0.00 0.00 2.29
2906 4065 5.013183 AGACATAGTTTTCACCCTAGCAAGT 59.987 40.000 0.00 0.00 0.00 3.16
2913 4072 5.609533 TTTCACCCTAGCAAGTATACTCC 57.390 43.478 5.70 0.62 0.00 3.85
2940 4099 1.463553 CCCCAAGTGTTTCCAGGCAC 61.464 60.000 0.00 0.00 35.98 5.01
2942 4101 1.331214 CCAAGTGTTTCCAGGCACAT 58.669 50.000 0.00 0.00 38.02 3.21
2965 4124 2.826738 ACAACCGCACACCACCAC 60.827 61.111 0.00 0.00 0.00 4.16
2967 4126 2.044848 AACCGCACACCACCACAA 60.045 55.556 0.00 0.00 0.00 3.33
2970 4129 2.542907 CCGCACACCACCACAAGAC 61.543 63.158 0.00 0.00 0.00 3.01
2971 4130 1.817520 CGCACACCACCACAAGACA 60.818 57.895 0.00 0.00 0.00 3.41
2973 4132 0.593128 GCACACCACCACAAGACATC 59.407 55.000 0.00 0.00 0.00 3.06
2983 4142 1.935873 CACAAGACATCGGTATGCCAG 59.064 52.381 0.00 0.00 36.50 4.85
2987 4146 0.882042 GACATCGGTATGCCAGCCAG 60.882 60.000 0.00 0.00 36.50 4.85
3025 4184 2.718609 CCATGGAGGGGAAATATCAGGT 59.281 50.000 5.56 0.00 0.00 4.00
3031 4190 4.019231 GGAGGGGAAATATCAGGTGATACC 60.019 50.000 1.72 0.11 39.57 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.610040 TCGTCACATTGCATACCTCTT 57.390 42.857 0.00 0.00 0.00 2.85
1 2 3.262420 GTTCGTCACATTGCATACCTCT 58.738 45.455 0.00 0.00 0.00 3.69
2 3 3.000041 TGTTCGTCACATTGCATACCTC 59.000 45.455 0.00 0.00 0.00 3.85
3 4 3.052455 TGTTCGTCACATTGCATACCT 57.948 42.857 0.00 0.00 0.00 3.08
4 5 3.435327 TCTTGTTCGTCACATTGCATACC 59.565 43.478 0.00 0.00 34.43 2.73
5 6 4.152402 ACTCTTGTTCGTCACATTGCATAC 59.848 41.667 0.00 0.00 34.43 2.39
6 7 4.314961 ACTCTTGTTCGTCACATTGCATA 58.685 39.130 0.00 0.00 34.43 3.14
7 8 3.141398 ACTCTTGTTCGTCACATTGCAT 58.859 40.909 0.00 0.00 34.43 3.96
8 9 2.560504 ACTCTTGTTCGTCACATTGCA 58.439 42.857 0.00 0.00 34.43 4.08
9 10 4.702392 CTTACTCTTGTTCGTCACATTGC 58.298 43.478 0.00 0.00 34.43 3.56
10 11 4.449068 AGCTTACTCTTGTTCGTCACATTG 59.551 41.667 0.00 0.00 34.43 2.82
11 12 4.632153 AGCTTACTCTTGTTCGTCACATT 58.368 39.130 0.00 0.00 34.43 2.71
12 13 4.238514 GAGCTTACTCTTGTTCGTCACAT 58.761 43.478 0.00 0.00 40.03 3.21
13 14 3.067601 TGAGCTTACTCTTGTTCGTCACA 59.932 43.478 0.00 0.00 43.85 3.58
14 15 3.639538 TGAGCTTACTCTTGTTCGTCAC 58.360 45.455 0.00 0.00 43.85 3.67
15 16 4.022329 TGATGAGCTTACTCTTGTTCGTCA 60.022 41.667 0.00 0.00 43.85 4.35
16 17 4.486090 TGATGAGCTTACTCTTGTTCGTC 58.514 43.478 0.00 0.00 43.85 4.20
17 18 4.521130 TGATGAGCTTACTCTTGTTCGT 57.479 40.909 0.00 0.00 43.85 3.85
18 19 5.447478 CTTGATGAGCTTACTCTTGTTCG 57.553 43.478 0.00 0.00 43.85 3.95
32 33 5.123502 ACTGACAGCTATTTTGCTTGATGAG 59.876 40.000 1.25 0.00 41.98 2.90
33 34 5.005740 ACTGACAGCTATTTTGCTTGATGA 58.994 37.500 1.25 0.00 41.98 2.92
34 35 5.306532 ACTGACAGCTATTTTGCTTGATG 57.693 39.130 1.25 0.00 41.98 3.07
35 36 5.972107 AACTGACAGCTATTTTGCTTGAT 57.028 34.783 1.25 0.00 41.98 2.57
36 37 5.067674 ACAAACTGACAGCTATTTTGCTTGA 59.932 36.000 13.39 0.00 41.98 3.02
37 38 5.284079 ACAAACTGACAGCTATTTTGCTTG 58.716 37.500 13.39 3.24 41.98 4.01
38 39 5.067674 TGACAAACTGACAGCTATTTTGCTT 59.932 36.000 13.39 0.00 41.98 3.91
39 40 4.580167 TGACAAACTGACAGCTATTTTGCT 59.420 37.500 13.39 4.57 45.18 3.91
40 41 4.676924 GTGACAAACTGACAGCTATTTTGC 59.323 41.667 13.39 8.76 31.61 3.68
41 42 5.009010 AGGTGACAAACTGACAGCTATTTTG 59.991 40.000 12.36 12.36 45.69 2.44
42 43 5.133221 AGGTGACAAACTGACAGCTATTTT 58.867 37.500 1.25 0.00 45.69 1.82
43 44 4.718961 AGGTGACAAACTGACAGCTATTT 58.281 39.130 1.25 0.00 45.69 1.40
44 45 4.357918 AGGTGACAAACTGACAGCTATT 57.642 40.909 1.25 0.00 45.69 1.73
45 46 4.357918 AAGGTGACAAACTGACAGCTAT 57.642 40.909 10.35 1.20 46.50 2.97
46 47 3.838244 AAGGTGACAAACTGACAGCTA 57.162 42.857 10.35 0.00 46.50 3.32
48 49 2.224314 GCTAAGGTGACAAACTGACAGC 59.776 50.000 1.25 1.02 39.94 4.40
49 50 3.466836 TGCTAAGGTGACAAACTGACAG 58.533 45.455 0.00 0.00 0.00 3.51
50 51 3.552132 TGCTAAGGTGACAAACTGACA 57.448 42.857 0.00 0.00 0.00 3.58
51 52 4.893424 TTTGCTAAGGTGACAAACTGAC 57.107 40.909 0.00 0.00 0.00 3.51
52 53 6.096141 TGAATTTTGCTAAGGTGACAAACTGA 59.904 34.615 0.00 0.00 33.29 3.41
53 54 6.272318 TGAATTTTGCTAAGGTGACAAACTG 58.728 36.000 0.00 0.00 33.29 3.16
54 55 6.463995 TGAATTTTGCTAAGGTGACAAACT 57.536 33.333 0.00 0.00 33.29 2.66
55 56 7.437862 TGATTGAATTTTGCTAAGGTGACAAAC 59.562 33.333 0.00 0.00 33.29 2.93
56 57 7.495901 TGATTGAATTTTGCTAAGGTGACAAA 58.504 30.769 0.00 0.00 0.00 2.83
57 58 7.048629 TGATTGAATTTTGCTAAGGTGACAA 57.951 32.000 0.00 0.00 0.00 3.18
58 59 6.647334 TGATTGAATTTTGCTAAGGTGACA 57.353 33.333 0.00 0.00 0.00 3.58
59 60 8.462016 ACTATGATTGAATTTTGCTAAGGTGAC 58.538 33.333 0.00 0.00 0.00 3.67
60 61 8.461222 CACTATGATTGAATTTTGCTAAGGTGA 58.539 33.333 0.00 0.00 0.00 4.02
61 62 8.461222 TCACTATGATTGAATTTTGCTAAGGTG 58.539 33.333 0.00 0.00 0.00 4.00
62 63 8.462016 GTCACTATGATTGAATTTTGCTAAGGT 58.538 33.333 0.00 0.00 0.00 3.50
63 64 8.680903 AGTCACTATGATTGAATTTTGCTAAGG 58.319 33.333 0.00 0.00 0.00 2.69
67 68 9.399797 TGATAGTCACTATGATTGAATTTTGCT 57.600 29.630 0.70 0.00 0.00 3.91
68 69 9.443283 GTGATAGTCACTATGATTGAATTTTGC 57.557 33.333 0.70 0.00 43.73 3.68
85 86 7.503521 TTGTTGTTAATTGCAGTGATAGTCA 57.496 32.000 0.00 0.00 0.00 3.41
86 87 8.289618 TCTTTGTTGTTAATTGCAGTGATAGTC 58.710 33.333 0.00 0.00 0.00 2.59
87 88 8.165239 TCTTTGTTGTTAATTGCAGTGATAGT 57.835 30.769 0.00 0.00 0.00 2.12
88 89 7.272084 GCTCTTTGTTGTTAATTGCAGTGATAG 59.728 37.037 0.00 0.00 0.00 2.08
89 90 7.083858 GCTCTTTGTTGTTAATTGCAGTGATA 58.916 34.615 0.00 0.00 0.00 2.15
90 91 5.922544 GCTCTTTGTTGTTAATTGCAGTGAT 59.077 36.000 0.00 0.00 0.00 3.06
91 92 5.163571 TGCTCTTTGTTGTTAATTGCAGTGA 60.164 36.000 0.00 0.00 0.00 3.41
92 93 5.042593 TGCTCTTTGTTGTTAATTGCAGTG 58.957 37.500 0.00 0.00 0.00 3.66
93 94 5.261209 TGCTCTTTGTTGTTAATTGCAGT 57.739 34.783 0.00 0.00 0.00 4.40
94 95 9.013490 GTATATGCTCTTTGTTGTTAATTGCAG 57.987 33.333 0.00 0.00 0.00 4.41
95 96 8.739039 AGTATATGCTCTTTGTTGTTAATTGCA 58.261 29.630 0.00 0.00 0.00 4.08
96 97 9.226345 GAGTATATGCTCTTTGTTGTTAATTGC 57.774 33.333 13.07 0.00 32.99 3.56
99 100 8.616076 GCTGAGTATATGCTCTTTGTTGTTAAT 58.384 33.333 19.81 0.00 36.51 1.40
100 101 7.065803 GGCTGAGTATATGCTCTTTGTTGTTAA 59.934 37.037 19.81 0.00 36.51 2.01
101 102 6.538742 GGCTGAGTATATGCTCTTTGTTGTTA 59.461 38.462 19.81 0.00 36.51 2.41
102 103 5.355350 GGCTGAGTATATGCTCTTTGTTGTT 59.645 40.000 19.81 0.00 36.51 2.83
103 104 4.878397 GGCTGAGTATATGCTCTTTGTTGT 59.122 41.667 19.81 0.00 36.51 3.32
104 105 5.007430 CAGGCTGAGTATATGCTCTTTGTTG 59.993 44.000 19.81 9.44 36.51 3.33
105 106 5.121811 CAGGCTGAGTATATGCTCTTTGTT 58.878 41.667 19.81 2.02 36.51 2.83
106 107 4.444022 CCAGGCTGAGTATATGCTCTTTGT 60.444 45.833 17.94 2.27 36.51 2.83
107 108 4.063689 CCAGGCTGAGTATATGCTCTTTG 58.936 47.826 17.94 12.52 36.51 2.77
108 109 3.969976 TCCAGGCTGAGTATATGCTCTTT 59.030 43.478 17.94 2.63 36.51 2.52
109 110 3.581101 TCCAGGCTGAGTATATGCTCTT 58.419 45.455 17.94 2.94 36.51 2.85
110 111 3.251016 TCCAGGCTGAGTATATGCTCT 57.749 47.619 17.94 0.00 36.51 4.09
111 112 3.323403 AGTTCCAGGCTGAGTATATGCTC 59.677 47.826 17.94 13.41 36.12 4.26
112 113 3.312890 AGTTCCAGGCTGAGTATATGCT 58.687 45.455 17.94 0.00 0.00 3.79
113 114 3.760580 AGTTCCAGGCTGAGTATATGC 57.239 47.619 17.94 0.00 0.00 3.14
114 115 7.500992 TCTTTTAGTTCCAGGCTGAGTATATG 58.499 38.462 17.94 0.00 0.00 1.78
115 116 7.676683 TCTTTTAGTTCCAGGCTGAGTATAT 57.323 36.000 17.94 0.00 0.00 0.86
116 117 7.490657 TTCTTTTAGTTCCAGGCTGAGTATA 57.509 36.000 17.94 0.61 0.00 1.47
117 118 6.374417 TTCTTTTAGTTCCAGGCTGAGTAT 57.626 37.500 17.94 1.64 0.00 2.12
118 119 5.818678 TTCTTTTAGTTCCAGGCTGAGTA 57.181 39.130 17.94 0.94 0.00 2.59
119 120 4.706842 TTCTTTTAGTTCCAGGCTGAGT 57.293 40.909 17.94 2.05 0.00 3.41
120 121 5.620879 GCAATTCTTTTAGTTCCAGGCTGAG 60.621 44.000 17.94 6.35 0.00 3.35
121 122 4.218417 GCAATTCTTTTAGTTCCAGGCTGA 59.782 41.667 17.94 0.00 0.00 4.26
122 123 4.022068 TGCAATTCTTTTAGTTCCAGGCTG 60.022 41.667 7.75 7.75 0.00 4.85
123 124 4.151883 TGCAATTCTTTTAGTTCCAGGCT 58.848 39.130 0.00 0.00 0.00 4.58
124 125 4.488879 CTGCAATTCTTTTAGTTCCAGGC 58.511 43.478 0.00 0.00 0.00 4.85
125 126 4.619160 GCCTGCAATTCTTTTAGTTCCAGG 60.619 45.833 0.00 0.00 40.11 4.45
126 127 4.488879 GCCTGCAATTCTTTTAGTTCCAG 58.511 43.478 0.00 0.00 0.00 3.86
127 128 3.057596 CGCCTGCAATTCTTTTAGTTCCA 60.058 43.478 0.00 0.00 0.00 3.53
128 129 3.501950 CGCCTGCAATTCTTTTAGTTCC 58.498 45.455 0.00 0.00 0.00 3.62
129 130 3.501950 CCGCCTGCAATTCTTTTAGTTC 58.498 45.455 0.00 0.00 0.00 3.01
130 131 2.352715 GCCGCCTGCAATTCTTTTAGTT 60.353 45.455 0.00 0.00 40.77 2.24
131 132 1.202348 GCCGCCTGCAATTCTTTTAGT 59.798 47.619 0.00 0.00 40.77 2.24
132 133 1.469767 GGCCGCCTGCAATTCTTTTAG 60.470 52.381 0.71 0.00 43.89 1.85
133 134 0.530288 GGCCGCCTGCAATTCTTTTA 59.470 50.000 0.71 0.00 43.89 1.52
134 135 1.187567 AGGCCGCCTGCAATTCTTTT 61.188 50.000 12.38 0.00 43.89 2.27
135 136 1.187567 AAGGCCGCCTGCAATTCTTT 61.188 50.000 14.19 0.00 43.89 2.52
136 137 0.323360 TAAGGCCGCCTGCAATTCTT 60.323 50.000 14.19 0.00 43.89 2.52
137 138 0.749454 CTAAGGCCGCCTGCAATTCT 60.749 55.000 14.19 0.00 43.89 2.40
138 139 0.748005 TCTAAGGCCGCCTGCAATTC 60.748 55.000 14.19 0.00 43.89 2.17
139 140 0.106519 ATCTAAGGCCGCCTGCAATT 60.107 50.000 14.19 0.00 43.89 2.32
140 141 0.820891 CATCTAAGGCCGCCTGCAAT 60.821 55.000 14.19 3.73 43.89 3.56
141 142 1.451927 CATCTAAGGCCGCCTGCAA 60.452 57.895 14.19 1.11 43.89 4.08
142 143 2.190313 CATCTAAGGCCGCCTGCA 59.810 61.111 14.19 3.01 43.89 4.41
143 144 2.592861 CCATCTAAGGCCGCCTGC 60.593 66.667 14.19 0.00 40.16 4.85
151 152 2.169352 AGTACAGTGCTGCCATCTAAGG 59.831 50.000 0.00 0.00 0.00 2.69
152 153 3.533606 AGTACAGTGCTGCCATCTAAG 57.466 47.619 0.00 0.00 0.00 2.18
153 154 3.599343 CAAGTACAGTGCTGCCATCTAA 58.401 45.455 0.00 0.00 0.00 2.10
154 155 2.093500 CCAAGTACAGTGCTGCCATCTA 60.093 50.000 0.00 0.00 0.00 1.98
155 156 1.339438 CCAAGTACAGTGCTGCCATCT 60.339 52.381 0.00 0.00 0.00 2.90
156 157 1.089920 CCAAGTACAGTGCTGCCATC 58.910 55.000 0.00 0.00 0.00 3.51
157 158 0.322816 CCCAAGTACAGTGCTGCCAT 60.323 55.000 0.00 0.00 0.00 4.40
158 159 1.073025 CCCAAGTACAGTGCTGCCA 59.927 57.895 0.00 0.00 0.00 4.92
159 160 2.335712 GCCCAAGTACAGTGCTGCC 61.336 63.158 0.00 0.00 0.00 4.85
160 161 1.301677 GAGCCCAAGTACAGTGCTGC 61.302 60.000 0.41 0.00 31.23 5.25
161 162 0.035317 TGAGCCCAAGTACAGTGCTG 59.965 55.000 0.41 0.00 31.23 4.41
162 163 0.764890 TTGAGCCCAAGTACAGTGCT 59.235 50.000 0.00 0.00 34.40 4.40
163 164 1.160137 CTTGAGCCCAAGTACAGTGC 58.840 55.000 0.00 0.00 43.60 4.40
172 173 1.281867 CCATGGTACTCTTGAGCCCAA 59.718 52.381 2.57 0.00 0.00 4.12
173 174 0.911769 CCATGGTACTCTTGAGCCCA 59.088 55.000 2.57 10.65 0.00 5.36
174 175 0.912486 ACCATGGTACTCTTGAGCCC 59.088 55.000 18.10 0.00 0.00 5.19
175 176 2.789409 AACCATGGTACTCTTGAGCC 57.211 50.000 20.12 0.00 0.00 4.70
176 177 3.197983 AGGTAACCATGGTACTCTTGAGC 59.802 47.826 20.12 7.36 37.17 4.26
177 178 5.178797 CAAGGTAACCATGGTACTCTTGAG 58.821 45.833 30.27 16.25 33.95 3.02
178 179 4.019681 CCAAGGTAACCATGGTACTCTTGA 60.020 45.833 32.89 11.40 38.83 3.02
179 180 4.019681 TCCAAGGTAACCATGGTACTCTTG 60.020 45.833 28.70 28.70 43.00 3.02
180 181 4.172807 TCCAAGGTAACCATGGTACTCTT 58.827 43.478 20.12 17.63 43.00 2.85
181 182 3.775316 CTCCAAGGTAACCATGGTACTCT 59.225 47.826 20.12 12.58 43.00 3.24
182 183 3.118371 CCTCCAAGGTAACCATGGTACTC 60.118 52.174 20.12 11.31 43.00 2.59
183 184 2.844348 CCTCCAAGGTAACCATGGTACT 59.156 50.000 20.12 14.11 43.00 2.73
184 185 2.841881 TCCTCCAAGGTAACCATGGTAC 59.158 50.000 20.12 15.75 43.00 3.34
185 186 2.841881 GTCCTCCAAGGTAACCATGGTA 59.158 50.000 20.12 3.74 43.00 3.25
186 187 1.633945 GTCCTCCAAGGTAACCATGGT 59.366 52.381 13.00 13.00 43.00 3.55
187 188 1.633432 TGTCCTCCAAGGTAACCATGG 59.367 52.381 11.19 11.19 43.65 3.66
188 189 3.282021 CATGTCCTCCAAGGTAACCATG 58.718 50.000 0.00 0.00 36.53 3.66
189 190 2.919602 ACATGTCCTCCAAGGTAACCAT 59.080 45.455 0.00 0.00 36.53 3.55
190 191 2.344592 ACATGTCCTCCAAGGTAACCA 58.655 47.619 0.00 0.00 36.53 3.67
191 192 4.772886 ATACATGTCCTCCAAGGTAACC 57.227 45.455 0.00 0.00 36.53 2.85
192 193 7.282450 CCTTTTATACATGTCCTCCAAGGTAAC 59.718 40.741 0.00 0.00 36.53 2.50
193 194 7.183112 TCCTTTTATACATGTCCTCCAAGGTAA 59.817 37.037 0.00 0.00 36.53 2.85
194 195 6.674861 TCCTTTTATACATGTCCTCCAAGGTA 59.325 38.462 0.00 0.00 36.53 3.08
195 196 5.491078 TCCTTTTATACATGTCCTCCAAGGT 59.509 40.000 0.00 0.00 36.53 3.50
196 197 6.001449 TCCTTTTATACATGTCCTCCAAGG 57.999 41.667 0.00 9.30 36.46 3.61
197 198 9.627123 TTTATCCTTTTATACATGTCCTCCAAG 57.373 33.333 0.00 0.00 0.00 3.61
248 249 9.973246 GTCACATGTGTATACTTAAGACAAATG 57.027 33.333 24.63 18.04 42.26 2.32
249 250 9.944376 AGTCACATGTGTATACTTAAGACAAAT 57.056 29.630 24.63 1.01 0.00 2.32
250 251 9.419297 GAGTCACATGTGTATACTTAAGACAAA 57.581 33.333 24.63 0.00 0.00 2.83
251 252 8.581578 TGAGTCACATGTGTATACTTAAGACAA 58.418 33.333 24.63 0.00 0.00 3.18
252 253 8.117813 TGAGTCACATGTGTATACTTAAGACA 57.882 34.615 24.63 11.76 0.00 3.41
253 254 9.587772 AATGAGTCACATGTGTATACTTAAGAC 57.412 33.333 24.63 11.64 39.39 3.01
254 255 9.803315 GAATGAGTCACATGTGTATACTTAAGA 57.197 33.333 24.63 7.81 39.39 2.10
255 256 9.586435 TGAATGAGTCACATGTGTATACTTAAG 57.414 33.333 24.63 0.00 39.39 1.85
256 257 9.936759 TTGAATGAGTCACATGTGTATACTTAA 57.063 29.630 24.63 13.41 39.39 1.85
257 258 9.366216 GTTGAATGAGTCACATGTGTATACTTA 57.634 33.333 24.63 17.28 39.39 2.24
258 259 7.877612 TGTTGAATGAGTCACATGTGTATACTT 59.122 33.333 24.63 13.96 39.39 2.24
259 260 7.331934 GTGTTGAATGAGTCACATGTGTATACT 59.668 37.037 24.63 20.13 39.39 2.12
260 261 7.456253 GTGTTGAATGAGTCACATGTGTATAC 58.544 38.462 24.63 15.83 39.39 1.47
261 262 6.310224 CGTGTTGAATGAGTCACATGTGTATA 59.690 38.462 24.63 10.82 39.39 1.47
262 263 5.120674 CGTGTTGAATGAGTCACATGTGTAT 59.879 40.000 24.63 14.66 39.39 2.29
263 264 4.447389 CGTGTTGAATGAGTCACATGTGTA 59.553 41.667 24.63 9.57 39.39 2.90
264 265 3.248363 CGTGTTGAATGAGTCACATGTGT 59.752 43.478 24.63 7.23 39.39 3.72
265 266 3.248363 ACGTGTTGAATGAGTCACATGTG 59.752 43.478 20.18 20.18 39.39 3.21
266 267 3.466836 ACGTGTTGAATGAGTCACATGT 58.533 40.909 0.00 0.00 39.39 3.21
267 268 4.472691 AACGTGTTGAATGAGTCACATG 57.527 40.909 0.00 0.00 39.39 3.21
268 269 6.650807 AGATTAACGTGTTGAATGAGTCACAT 59.349 34.615 0.00 0.00 41.45 3.21
269 270 5.989168 AGATTAACGTGTTGAATGAGTCACA 59.011 36.000 0.00 0.00 35.39 3.58
270 271 6.145534 TCAGATTAACGTGTTGAATGAGTCAC 59.854 38.462 0.00 0.00 35.39 3.67
271 272 6.220201 TCAGATTAACGTGTTGAATGAGTCA 58.780 36.000 0.00 0.00 0.00 3.41
272 273 6.706055 TCAGATTAACGTGTTGAATGAGTC 57.294 37.500 0.00 0.00 0.00 3.36
273 274 6.402550 GCATCAGATTAACGTGTTGAATGAGT 60.403 38.462 0.00 0.00 0.00 3.41
274 275 5.961843 GCATCAGATTAACGTGTTGAATGAG 59.038 40.000 0.00 0.00 0.00 2.90
275 276 5.411053 TGCATCAGATTAACGTGTTGAATGA 59.589 36.000 0.00 0.00 0.00 2.57
276 277 5.630061 TGCATCAGATTAACGTGTTGAATG 58.370 37.500 0.00 0.00 0.00 2.67
277 278 5.674569 GCTGCATCAGATTAACGTGTTGAAT 60.675 40.000 0.00 0.00 32.44 2.57
278 279 4.378356 GCTGCATCAGATTAACGTGTTGAA 60.378 41.667 0.00 0.00 32.44 2.69
279 280 3.125146 GCTGCATCAGATTAACGTGTTGA 59.875 43.478 0.00 0.00 32.44 3.18
280 281 3.419915 GCTGCATCAGATTAACGTGTTG 58.580 45.455 0.00 0.00 32.44 3.33
281 282 2.420022 GGCTGCATCAGATTAACGTGTT 59.580 45.455 0.50 0.00 32.44 3.32
282 283 2.009774 GGCTGCATCAGATTAACGTGT 58.990 47.619 0.50 0.00 32.44 4.49
283 284 2.009051 TGGCTGCATCAGATTAACGTG 58.991 47.619 0.50 0.00 32.44 4.49
284 285 2.401583 TGGCTGCATCAGATTAACGT 57.598 45.000 0.50 0.00 32.44 3.99
285 286 3.976793 ATTGGCTGCATCAGATTAACG 57.023 42.857 0.50 0.00 32.44 3.18
286 287 8.786898 TCTAATTATTGGCTGCATCAGATTAAC 58.213 33.333 0.50 0.00 32.44 2.01
287 288 8.922931 TCTAATTATTGGCTGCATCAGATTAA 57.077 30.769 0.50 0.00 32.44 1.40
289 290 9.524496 TTATCTAATTATTGGCTGCATCAGATT 57.476 29.630 0.50 0.00 32.44 2.40
290 291 9.696572 ATTATCTAATTATTGGCTGCATCAGAT 57.303 29.630 0.50 0.00 32.44 2.90
291 292 9.524496 AATTATCTAATTATTGGCTGCATCAGA 57.476 29.630 0.50 0.00 34.36 3.27
292 293 9.784680 GAATTATCTAATTATTGGCTGCATCAG 57.215 33.333 0.50 0.00 36.13 2.90
293 294 9.299465 TGAATTATCTAATTATTGGCTGCATCA 57.701 29.630 0.50 0.00 36.13 3.07
296 297 9.081204 ACATGAATTATCTAATTATTGGCTGCA 57.919 29.630 0.00 0.00 36.13 4.41
297 298 9.350357 CACATGAATTATCTAATTATTGGCTGC 57.650 33.333 0.00 0.00 36.13 5.25
298 299 9.850628 CCACATGAATTATCTAATTATTGGCTG 57.149 33.333 0.00 0.00 36.13 4.85
299 300 9.812347 TCCACATGAATTATCTAATTATTGGCT 57.188 29.630 0.00 0.00 36.13 4.75
300 301 9.846248 GTCCACATGAATTATCTAATTATTGGC 57.154 33.333 0.00 0.00 36.13 4.52
306 307 9.927081 AAAGAGGTCCACATGAATTATCTAATT 57.073 29.630 0.00 0.00 38.51 1.40
307 308 9.347240 CAAAGAGGTCCACATGAATTATCTAAT 57.653 33.333 0.00 0.00 0.00 1.73
308 309 8.328758 ACAAAGAGGTCCACATGAATTATCTAA 58.671 33.333 0.00 0.00 0.00 2.10
309 310 7.770433 CACAAAGAGGTCCACATGAATTATCTA 59.230 37.037 0.00 0.00 0.00 1.98
310 311 6.600822 CACAAAGAGGTCCACATGAATTATCT 59.399 38.462 0.00 0.00 0.00 1.98
311 312 6.375455 ACACAAAGAGGTCCACATGAATTATC 59.625 38.462 0.00 0.00 0.00 1.75
312 313 6.151648 CACACAAAGAGGTCCACATGAATTAT 59.848 38.462 0.00 0.00 0.00 1.28
313 314 5.473162 CACACAAAGAGGTCCACATGAATTA 59.527 40.000 0.00 0.00 0.00 1.40
314 315 4.279169 CACACAAAGAGGTCCACATGAATT 59.721 41.667 0.00 0.00 0.00 2.17
315 316 3.822735 CACACAAAGAGGTCCACATGAAT 59.177 43.478 0.00 0.00 0.00 2.57
316 317 3.213506 CACACAAAGAGGTCCACATGAA 58.786 45.455 0.00 0.00 0.00 2.57
317 318 2.172505 ACACACAAAGAGGTCCACATGA 59.827 45.455 0.00 0.00 0.00 3.07
318 319 2.575532 ACACACAAAGAGGTCCACATG 58.424 47.619 0.00 0.00 0.00 3.21
319 320 3.135712 TGTACACACAAAGAGGTCCACAT 59.864 43.478 0.00 0.00 0.00 3.21
320 321 2.502130 TGTACACACAAAGAGGTCCACA 59.498 45.455 0.00 0.00 0.00 4.17
321 322 2.870411 GTGTACACACAAAGAGGTCCAC 59.130 50.000 21.14 0.00 45.75 4.02
322 323 3.188159 GTGTACACACAAAGAGGTCCA 57.812 47.619 21.14 0.00 45.75 4.02
333 334 6.696148 GCTCAAGGTATATACAGTGTACACAC 59.304 42.308 27.06 14.24 46.77 3.82
334 335 6.459161 CGCTCAAGGTATATACAGTGTACACA 60.459 42.308 27.06 7.89 0.00 3.72
335 336 5.913514 CGCTCAAGGTATATACAGTGTACAC 59.086 44.000 18.56 18.56 0.00 2.90
336 337 5.591472 ACGCTCAAGGTATATACAGTGTACA 59.409 40.000 14.70 0.00 0.00 2.90
337 338 5.913514 CACGCTCAAGGTATATACAGTGTAC 59.086 44.000 14.70 0.00 0.00 2.90
338 339 5.824097 TCACGCTCAAGGTATATACAGTGTA 59.176 40.000 14.70 5.24 0.00 2.90
339 340 4.643334 TCACGCTCAAGGTATATACAGTGT 59.357 41.667 14.70 12.03 0.00 3.55
340 341 4.976731 GTCACGCTCAAGGTATATACAGTG 59.023 45.833 14.70 11.46 0.00 3.66
341 342 4.888239 AGTCACGCTCAAGGTATATACAGT 59.112 41.667 14.70 0.00 0.00 3.55
342 343 5.008712 TCAGTCACGCTCAAGGTATATACAG 59.991 44.000 14.70 4.62 0.00 2.74
343 344 4.885325 TCAGTCACGCTCAAGGTATATACA 59.115 41.667 14.70 0.00 0.00 2.29
344 345 5.434352 TCAGTCACGCTCAAGGTATATAC 57.566 43.478 4.14 4.14 0.00 1.47
345 346 5.826208 TCTTCAGTCACGCTCAAGGTATATA 59.174 40.000 0.00 0.00 0.00 0.86
346 347 4.645136 TCTTCAGTCACGCTCAAGGTATAT 59.355 41.667 0.00 0.00 0.00 0.86
347 348 4.014406 TCTTCAGTCACGCTCAAGGTATA 58.986 43.478 0.00 0.00 0.00 1.47
348 349 2.826128 TCTTCAGTCACGCTCAAGGTAT 59.174 45.455 0.00 0.00 0.00 2.73
349 350 2.235891 TCTTCAGTCACGCTCAAGGTA 58.764 47.619 0.00 0.00 0.00 3.08
350 351 1.040646 TCTTCAGTCACGCTCAAGGT 58.959 50.000 0.00 0.00 0.00 3.50
351 352 2.376808 ATCTTCAGTCACGCTCAAGG 57.623 50.000 0.00 0.00 0.00 3.61
352 353 3.120408 CCAAATCTTCAGTCACGCTCAAG 60.120 47.826 0.00 0.00 0.00 3.02
353 354 2.807967 CCAAATCTTCAGTCACGCTCAA 59.192 45.455 0.00 0.00 0.00 3.02
354 355 2.037121 TCCAAATCTTCAGTCACGCTCA 59.963 45.455 0.00 0.00 0.00 4.26
355 356 2.688507 TCCAAATCTTCAGTCACGCTC 58.311 47.619 0.00 0.00 0.00 5.03
356 357 2.839486 TCCAAATCTTCAGTCACGCT 57.161 45.000 0.00 0.00 0.00 5.07
357 358 2.476854 GCATCCAAATCTTCAGTCACGC 60.477 50.000 0.00 0.00 0.00 5.34
358 359 2.096496 GGCATCCAAATCTTCAGTCACG 59.904 50.000 0.00 0.00 0.00 4.35
359 360 3.084039 TGGCATCCAAATCTTCAGTCAC 58.916 45.455 0.00 0.00 0.00 3.67
360 361 3.438216 TGGCATCCAAATCTTCAGTCA 57.562 42.857 0.00 0.00 0.00 3.41
361 362 4.202090 GGAATGGCATCCAAATCTTCAGTC 60.202 45.833 0.00 0.00 39.42 3.51
362 363 3.703052 GGAATGGCATCCAAATCTTCAGT 59.297 43.478 0.00 0.00 39.42 3.41
363 364 3.958798 AGGAATGGCATCCAAATCTTCAG 59.041 43.478 15.32 0.00 42.27 3.02
364 365 3.702548 CAGGAATGGCATCCAAATCTTCA 59.297 43.478 15.32 0.00 42.27 3.02
365 366 3.069158 CCAGGAATGGCATCCAAATCTTC 59.931 47.826 15.32 2.48 42.27 2.87
366 367 3.036091 CCAGGAATGGCATCCAAATCTT 58.964 45.455 15.32 0.00 42.27 2.40
367 368 2.023695 ACCAGGAATGGCATCCAAATCT 60.024 45.455 15.32 0.00 42.27 2.40
368 369 2.363359 GACCAGGAATGGCATCCAAATC 59.637 50.000 15.32 3.66 42.27 2.17
369 370 2.391678 GACCAGGAATGGCATCCAAAT 58.608 47.619 15.32 0.00 42.27 2.32
370 371 1.851304 GACCAGGAATGGCATCCAAA 58.149 50.000 15.32 0.00 42.27 3.28
371 372 0.394216 CGACCAGGAATGGCATCCAA 60.394 55.000 15.32 0.00 42.27 3.53
372 373 1.224315 CGACCAGGAATGGCATCCA 59.776 57.895 15.32 0.00 42.27 3.41
373 374 1.097547 CACGACCAGGAATGGCATCC 61.098 60.000 0.00 4.08 39.96 3.51
374 375 0.392998 ACACGACCAGGAATGGCATC 60.393 55.000 0.00 0.00 0.00 3.91
375 376 0.908910 TACACGACCAGGAATGGCAT 59.091 50.000 0.00 0.00 0.00 4.40
376 377 0.249120 CTACACGACCAGGAATGGCA 59.751 55.000 0.00 0.00 0.00 4.92
377 378 1.090052 GCTACACGACCAGGAATGGC 61.090 60.000 0.00 0.00 0.00 4.40
378 379 0.537188 AGCTACACGACCAGGAATGG 59.463 55.000 0.00 0.00 0.00 3.16
379 380 1.471676 GGAGCTACACGACCAGGAATG 60.472 57.143 0.00 0.00 0.00 2.67
380 381 0.824759 GGAGCTACACGACCAGGAAT 59.175 55.000 0.00 0.00 0.00 3.01
381 382 1.592400 CGGAGCTACACGACCAGGAA 61.592 60.000 0.00 0.00 0.00 3.36
382 383 2.044555 CGGAGCTACACGACCAGGA 61.045 63.158 0.00 0.00 0.00 3.86
383 384 2.490217 CGGAGCTACACGACCAGG 59.510 66.667 0.00 0.00 0.00 4.45
384 385 2.490217 CCGGAGCTACACGACCAG 59.510 66.667 0.00 0.00 0.00 4.00
385 386 3.755628 GCCGGAGCTACACGACCA 61.756 66.667 5.05 0.00 35.50 4.02
386 387 4.849329 CGCCGGAGCTACACGACC 62.849 72.222 5.05 0.00 36.60 4.79
387 388 3.807538 TCGCCGGAGCTACACGAC 61.808 66.667 5.05 0.00 36.60 4.34
388 389 3.807538 GTCGCCGGAGCTACACGA 61.808 66.667 5.05 6.95 34.89 4.35
389 390 4.849329 GGTCGCCGGAGCTACACG 62.849 72.222 5.05 0.00 36.43 4.49
390 391 3.701604 CTGGTCGCCGGAGCTACAC 62.702 68.421 5.05 0.00 41.26 2.90
391 392 3.449227 CTGGTCGCCGGAGCTACA 61.449 66.667 5.05 0.24 41.26 2.74
392 393 4.874977 GCTGGTCGCCGGAGCTAC 62.875 72.222 5.05 0.00 41.26 3.58
396 397 3.449227 TAGTGCTGGTCGCCGGAG 61.449 66.667 5.05 0.00 38.05 4.63
397 398 3.755628 GTAGTGCTGGTCGCCGGA 61.756 66.667 5.05 0.00 38.05 5.14
398 399 4.814294 GGTAGTGCTGGTCGCCGG 62.814 72.222 0.00 0.00 38.05 6.13
400 401 3.701604 CTCGGTAGTGCTGGTCGCC 62.702 68.421 0.00 0.00 38.05 5.54
401 402 2.202623 CTCGGTAGTGCTGGTCGC 60.203 66.667 0.00 0.00 39.77 5.19
402 403 2.202623 GCTCGGTAGTGCTGGTCG 60.203 66.667 0.00 0.00 34.34 4.79
403 404 2.184579 GGCTCGGTAGTGCTGGTC 59.815 66.667 0.00 0.00 37.09 4.02
404 405 2.283966 AGGCTCGGTAGTGCTGGT 60.284 61.111 0.00 0.00 37.09 4.00
405 406 2.185350 CAGGCTCGGTAGTGCTGG 59.815 66.667 0.00 0.00 37.09 4.85
406 407 2.510238 GCAGGCTCGGTAGTGCTG 60.510 66.667 0.00 0.00 37.09 4.41
407 408 3.775654 GGCAGGCTCGGTAGTGCT 61.776 66.667 0.00 0.00 37.09 4.40
408 409 4.840005 GGGCAGGCTCGGTAGTGC 62.840 72.222 0.00 0.00 36.24 4.40
409 410 4.514577 CGGGCAGGCTCGGTAGTG 62.515 72.222 5.47 0.00 36.08 2.74
410 411 4.753662 TCGGGCAGGCTCGGTAGT 62.754 66.667 14.22 0.00 40.85 2.73
411 412 3.214250 GATCGGGCAGGCTCGGTAG 62.214 68.421 14.22 0.00 40.85 3.18
412 413 3.224324 GATCGGGCAGGCTCGGTA 61.224 66.667 14.22 0.00 40.85 4.02
414 415 3.391665 AAAGATCGGGCAGGCTCGG 62.392 63.158 14.22 0.00 40.85 4.63
415 416 1.884926 GAAAGATCGGGCAGGCTCG 60.885 63.158 7.33 7.33 42.03 5.03
416 417 0.813210 CAGAAAGATCGGGCAGGCTC 60.813 60.000 0.00 0.00 0.00 4.70
417 418 1.222936 CAGAAAGATCGGGCAGGCT 59.777 57.895 0.00 0.00 0.00 4.58
418 419 1.821332 CCAGAAAGATCGGGCAGGC 60.821 63.158 0.00 0.00 34.05 4.85
431 432 3.173151 TGCAGTCCATAGTCTTCCAGAA 58.827 45.455 0.00 0.00 0.00 3.02
442 443 1.227645 GCGAGGCATGCAGTCCATA 60.228 57.895 21.36 0.00 31.47 2.74
472 473 0.661020 GTGTCTTCAACAACCACCGG 59.339 55.000 0.00 0.00 40.31 5.28
497 498 1.630126 ATGGCATGGAAGGAGAGCGT 61.630 55.000 0.00 0.00 0.00 5.07
513 514 0.540365 ACAGCTGGTTTGGTGGATGG 60.540 55.000 19.93 0.00 39.48 3.51
522 523 2.608752 CGGTCGTACTAACAGCTGGTTT 60.609 50.000 19.93 6.74 40.96 3.27
582 583 4.827692 AGTTTTTCTTTCCCTTTGCGTTT 58.172 34.783 0.00 0.00 0.00 3.60
584 585 4.180817 CAAGTTTTTCTTTCCCTTTGCGT 58.819 39.130 0.00 0.00 33.63 5.24
589 605 3.517500 TGTGGCAAGTTTTTCTTTCCCTT 59.482 39.130 0.00 0.00 38.40 3.95
638 660 3.193263 GTCGATGTGATGAGCTTGTGAT 58.807 45.455 0.00 0.00 0.00 3.06
653 675 1.280982 CAGTTCCGTCCATGTCGATG 58.719 55.000 8.71 0.00 0.00 3.84
744 767 2.354188 CGTCACTTGTCGCCGTCA 60.354 61.111 0.00 0.00 0.00 4.35
754 777 1.030457 ACTCGACAACCTCGTCACTT 58.970 50.000 0.00 0.00 43.45 3.16
757 780 1.105167 ACCACTCGACAACCTCGTCA 61.105 55.000 0.00 0.00 43.45 4.35
780 803 3.756963 AGCAGGGAAAAAGATTTACGACC 59.243 43.478 0.00 0.00 29.34 4.79
791 814 3.459145 GCGGTTTTAAAGCAGGGAAAAA 58.541 40.909 7.66 0.00 0.00 1.94
1128 2073 0.830648 ACATGTCGATGACGGGGATT 59.169 50.000 0.00 0.00 40.21 3.01
1137 2082 1.946156 CGGCGAGGACATGTCGATG 60.946 63.158 19.33 11.86 39.92 3.84
1138 2083 2.413351 CGGCGAGGACATGTCGAT 59.587 61.111 19.33 10.68 39.92 3.59
1837 2818 8.121708 ACAAACAATGCAAAATTAACACATGTC 58.878 29.630 0.00 0.00 0.00 3.06
1852 2833 6.459161 GCTCATGATCTATCACAAACAATGCA 60.459 38.462 0.00 0.00 40.03 3.96
2160 3147 6.899089 ACCACCAAAGAAGAAAATCCAAATT 58.101 32.000 0.00 0.00 0.00 1.82
2161 3148 6.499106 ACCACCAAAGAAGAAAATCCAAAT 57.501 33.333 0.00 0.00 0.00 2.32
2511 3660 6.016527 TGGCGTGTGGTTAAATTGTATGTTTA 60.017 34.615 0.00 0.00 0.00 2.01
2512 3661 5.221263 TGGCGTGTGGTTAAATTGTATGTTT 60.221 36.000 0.00 0.00 0.00 2.83
2524 3673 0.178301 TGTTCTGTGGCGTGTGGTTA 59.822 50.000 0.00 0.00 0.00 2.85
2525 3674 1.078072 TGTTCTGTGGCGTGTGGTT 60.078 52.632 0.00 0.00 0.00 3.67
2528 3677 1.817520 TGGTGTTCTGTGGCGTGTG 60.818 57.895 0.00 0.00 0.00 3.82
2529 3678 1.817941 GTGGTGTTCTGTGGCGTGT 60.818 57.895 0.00 0.00 0.00 4.49
2530 3679 2.542907 GGTGGTGTTCTGTGGCGTG 61.543 63.158 0.00 0.00 0.00 5.34
2531 3680 2.203153 GGTGGTGTTCTGTGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
2532 3681 2.978010 GGGTGGTGTTCTGTGGCG 60.978 66.667 0.00 0.00 0.00 5.69
2533 3682 1.898574 CTGGGTGGTGTTCTGTGGC 60.899 63.158 0.00 0.00 0.00 5.01
2548 3697 0.180171 TTGGGTGAGTGTGTGTCTGG 59.820 55.000 0.00 0.00 0.00 3.86
2551 3700 1.134521 TGTCTTGGGTGAGTGTGTGTC 60.135 52.381 0.00 0.00 0.00 3.67
2560 3711 5.030147 ACTTATGTATCCTGTCTTGGGTGA 58.970 41.667 0.00 0.00 0.00 4.02
2564 3715 4.130118 GGCACTTATGTATCCTGTCTTGG 58.870 47.826 0.00 0.00 0.00 3.61
2569 3724 4.526970 CCTTTGGCACTTATGTATCCTGT 58.473 43.478 0.00 0.00 0.00 4.00
2595 3750 1.470890 CGTTTGAGGTGTTGTGGTTGT 59.529 47.619 0.00 0.00 0.00 3.32
2620 3775 6.898041 TGCATAGTGTCATTTTGTGTACTTC 58.102 36.000 0.00 0.00 31.93 3.01
2646 3801 0.811616 GCTCCAACGGCTCCATAGTG 60.812 60.000 0.00 0.00 0.00 2.74
2648 3803 1.227674 GGCTCCAACGGCTCCATAG 60.228 63.158 0.00 0.00 0.00 2.23
2656 3811 1.675641 CCAAGAAGGGCTCCAACGG 60.676 63.158 0.00 0.00 0.00 4.44
2657 3812 3.987404 CCAAGAAGGGCTCCAACG 58.013 61.111 0.00 0.00 0.00 4.10
2666 3821 0.512952 CGTGTCTTTCGCCAAGAAGG 59.487 55.000 0.00 0.00 43.52 3.46
2690 3846 2.287103 GTCACGGTTTGTTCTTCACCTC 59.713 50.000 0.00 0.00 0.00 3.85
2712 3868 1.388065 CCGGAGGCACTGTCTAGGAG 61.388 65.000 0.00 0.00 46.14 3.69
2765 3921 8.472413 TCAAATGAAAATCCTGATCTTTGGATC 58.528 33.333 13.20 0.00 46.20 3.36
2767 3923 7.779754 TCAAATGAAAATCCTGATCTTTGGA 57.220 32.000 0.00 0.00 36.72 3.53
2768 3924 7.064253 GCTTCAAATGAAAATCCTGATCTTTGG 59.936 37.037 0.00 0.00 33.07 3.28
2769 3925 7.601130 TGCTTCAAATGAAAATCCTGATCTTTG 59.399 33.333 0.00 0.00 33.07 2.77
2770 3926 7.673180 TGCTTCAAATGAAAATCCTGATCTTT 58.327 30.769 0.00 0.00 33.07 2.52
2771 3927 7.235935 TGCTTCAAATGAAAATCCTGATCTT 57.764 32.000 0.00 0.00 33.07 2.40
2772 3928 6.845758 TGCTTCAAATGAAAATCCTGATCT 57.154 33.333 0.00 0.00 33.07 2.75
2773 3929 7.262772 TCATGCTTCAAATGAAAATCCTGATC 58.737 34.615 0.00 0.00 33.07 2.92
2774 3930 7.177832 TCATGCTTCAAATGAAAATCCTGAT 57.822 32.000 0.00 0.00 33.07 2.90
2775 3931 6.593268 TCATGCTTCAAATGAAAATCCTGA 57.407 33.333 0.00 0.00 33.07 3.86
2776 3932 7.039270 TCATCATGCTTCAAATGAAAATCCTG 58.961 34.615 0.00 0.00 37.58 3.86
2777 3933 7.177832 TCATCATGCTTCAAATGAAAATCCT 57.822 32.000 0.00 0.00 37.58 3.24
2778 3934 7.762615 TCTTCATCATGCTTCAAATGAAAATCC 59.237 33.333 6.68 0.00 37.60 3.01
2779 3935 8.697846 TCTTCATCATGCTTCAAATGAAAATC 57.302 30.769 6.68 0.00 37.60 2.17
2780 3936 8.932791 GTTCTTCATCATGCTTCAAATGAAAAT 58.067 29.630 6.68 0.00 37.60 1.82
2781 3937 8.145767 AGTTCTTCATCATGCTTCAAATGAAAA 58.854 29.630 6.68 3.18 37.60 2.29
2782 3938 7.663827 AGTTCTTCATCATGCTTCAAATGAAA 58.336 30.769 6.68 0.00 37.60 2.69
2783 3939 7.223260 AGTTCTTCATCATGCTTCAAATGAA 57.777 32.000 5.45 5.45 37.58 2.57
2784 3940 6.829229 AGTTCTTCATCATGCTTCAAATGA 57.171 33.333 0.00 0.00 38.37 2.57
2785 3941 7.066645 TCCTAGTTCTTCATCATGCTTCAAATG 59.933 37.037 0.00 0.00 0.00 2.32
2786 3942 7.114754 TCCTAGTTCTTCATCATGCTTCAAAT 58.885 34.615 0.00 0.00 0.00 2.32
2787 3943 6.475504 TCCTAGTTCTTCATCATGCTTCAAA 58.524 36.000 0.00 0.00 0.00 2.69
2788 3944 6.053632 TCCTAGTTCTTCATCATGCTTCAA 57.946 37.500 0.00 0.00 0.00 2.69
2789 3945 5.668471 CTCCTAGTTCTTCATCATGCTTCA 58.332 41.667 0.00 0.00 0.00 3.02
2790 3946 4.511082 GCTCCTAGTTCTTCATCATGCTTC 59.489 45.833 0.00 0.00 0.00 3.86
2791 3947 4.080695 TGCTCCTAGTTCTTCATCATGCTT 60.081 41.667 0.00 0.00 0.00 3.91
2792 3948 3.453717 TGCTCCTAGTTCTTCATCATGCT 59.546 43.478 0.00 0.00 0.00 3.79
2793 3949 3.801698 TGCTCCTAGTTCTTCATCATGC 58.198 45.455 0.00 0.00 0.00 4.06
2794 3950 6.018098 GTGATTGCTCCTAGTTCTTCATCATG 60.018 42.308 0.00 0.00 0.00 3.07
2795 3951 6.054295 GTGATTGCTCCTAGTTCTTCATCAT 58.946 40.000 0.00 0.00 0.00 2.45
2796 3952 5.046376 TGTGATTGCTCCTAGTTCTTCATCA 60.046 40.000 0.00 0.00 0.00 3.07
2797 3953 5.423015 TGTGATTGCTCCTAGTTCTTCATC 58.577 41.667 0.00 0.00 0.00 2.92
2798 3954 5.426689 TGTGATTGCTCCTAGTTCTTCAT 57.573 39.130 0.00 0.00 0.00 2.57
2799 3955 4.890158 TGTGATTGCTCCTAGTTCTTCA 57.110 40.909 0.00 0.00 0.00 3.02
2800 3956 4.092091 CGTTGTGATTGCTCCTAGTTCTTC 59.908 45.833 0.00 0.00 0.00 2.87
2801 3957 3.997021 CGTTGTGATTGCTCCTAGTTCTT 59.003 43.478 0.00 0.00 0.00 2.52
2802 3958 3.589988 CGTTGTGATTGCTCCTAGTTCT 58.410 45.455 0.00 0.00 0.00 3.01
2803 3959 2.673368 CCGTTGTGATTGCTCCTAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
2804 3960 2.301870 TCCGTTGTGATTGCTCCTAGTT 59.698 45.455 0.00 0.00 0.00 2.24
2805 3961 1.899814 TCCGTTGTGATTGCTCCTAGT 59.100 47.619 0.00 0.00 0.00 2.57
2806 3962 2.544685 CTCCGTTGTGATTGCTCCTAG 58.455 52.381 0.00 0.00 0.00 3.02
2807 3963 1.207089 CCTCCGTTGTGATTGCTCCTA 59.793 52.381 0.00 0.00 0.00 2.94
2808 3964 0.036010 CCTCCGTTGTGATTGCTCCT 60.036 55.000 0.00 0.00 0.00 3.69
2809 3965 0.036388 TCCTCCGTTGTGATTGCTCC 60.036 55.000 0.00 0.00 0.00 4.70
2810 3966 1.079503 GTCCTCCGTTGTGATTGCTC 58.920 55.000 0.00 0.00 0.00 4.26
2811 3967 0.687354 AGTCCTCCGTTGTGATTGCT 59.313 50.000 0.00 0.00 0.00 3.91
2812 3968 1.464997 GAAGTCCTCCGTTGTGATTGC 59.535 52.381 0.00 0.00 0.00 3.56
2813 3969 2.766313 TGAAGTCCTCCGTTGTGATTG 58.234 47.619 0.00 0.00 0.00 2.67
2814 3970 3.071023 TCTTGAAGTCCTCCGTTGTGATT 59.929 43.478 0.00 0.00 0.00 2.57
2815 3971 2.632996 TCTTGAAGTCCTCCGTTGTGAT 59.367 45.455 0.00 0.00 0.00 3.06
2816 3972 2.036387 TCTTGAAGTCCTCCGTTGTGA 58.964 47.619 0.00 0.00 0.00 3.58
2817 3973 2.526304 TCTTGAAGTCCTCCGTTGTG 57.474 50.000 0.00 0.00 0.00 3.33
2818 3974 2.224305 CCTTCTTGAAGTCCTCCGTTGT 60.224 50.000 9.21 0.00 0.00 3.32
2819 3975 2.224305 ACCTTCTTGAAGTCCTCCGTTG 60.224 50.000 9.21 0.00 0.00 4.10
2820 3976 2.047830 ACCTTCTTGAAGTCCTCCGTT 58.952 47.619 9.21 0.00 0.00 4.44
2821 3977 1.344763 CACCTTCTTGAAGTCCTCCGT 59.655 52.381 9.21 0.00 0.00 4.69
2822 3978 1.618837 TCACCTTCTTGAAGTCCTCCG 59.381 52.381 9.21 0.00 0.00 4.63
2823 3979 2.610727 CGTCACCTTCTTGAAGTCCTCC 60.611 54.545 9.21 0.00 0.00 4.30
2824 3980 2.296471 TCGTCACCTTCTTGAAGTCCTC 59.704 50.000 9.21 0.00 0.00 3.71
2825 3981 2.036089 GTCGTCACCTTCTTGAAGTCCT 59.964 50.000 9.21 0.00 0.00 3.85
2826 3982 2.405172 GTCGTCACCTTCTTGAAGTCC 58.595 52.381 9.21 0.00 0.00 3.85
2835 3991 1.728426 CGTGGACGTCGTCACCTTC 60.728 63.158 25.64 9.40 33.68 3.46
2857 4013 3.159984 GTCAGGCAGACGAAAGCG 58.840 61.111 0.00 0.00 44.79 4.68
2858 4014 2.413862 TTTGGTCAGGCAGACGAAAGC 61.414 52.381 14.44 0.00 45.92 3.51
2888 4045 6.351966 GGAGTATACTTGCTAGGGTGAAAACT 60.352 42.308 6.88 0.00 0.00 2.66
2889 4046 5.816258 GGAGTATACTTGCTAGGGTGAAAAC 59.184 44.000 6.88 0.00 0.00 2.43
2894 4053 2.288273 GCGGAGTATACTTGCTAGGGTG 60.288 54.545 18.62 0.93 0.00 4.61
2940 4099 1.896183 TGTGCGGTTGTGGTCCATG 60.896 57.895 0.00 0.00 0.00 3.66
2942 4101 2.515057 GTGTGCGGTTGTGGTCCA 60.515 61.111 0.00 0.00 0.00 4.02
2965 4124 0.940126 GCTGGCATACCGATGTCTTG 59.060 55.000 0.00 0.00 38.58 3.02
2967 4126 1.337384 TGGCTGGCATACCGATGTCT 61.337 55.000 0.00 0.00 38.58 3.41
2970 4129 2.256591 GCTGGCTGGCATACCGATG 61.257 63.158 3.74 0.00 39.70 3.84
2971 4130 2.111878 GCTGGCTGGCATACCGAT 59.888 61.111 3.74 0.00 39.70 4.18
2973 4132 3.204827 GTGCTGGCTGGCATACCG 61.205 66.667 3.74 0.00 44.34 4.02
2994 4153 0.962356 CCCTCCATGGTTGAGTGCAC 60.962 60.000 12.58 9.40 0.00 4.57
3002 4161 3.140895 CCTGATATTTCCCCTCCATGGTT 59.859 47.826 12.58 0.00 0.00 3.67
3003 4162 2.718609 CCTGATATTTCCCCTCCATGGT 59.281 50.000 12.58 0.00 0.00 3.55
3004 4163 2.718609 ACCTGATATTTCCCCTCCATGG 59.281 50.000 4.97 4.97 0.00 3.66
3031 4190 0.962489 CCCGTATCACCTCAGCCTAG 59.038 60.000 0.00 0.00 0.00 3.02
3032 4191 1.113517 GCCCGTATCACCTCAGCCTA 61.114 60.000 0.00 0.00 0.00 3.93
3041 4200 1.797211 CTCCCGAGAGCCCGTATCAC 61.797 65.000 0.00 0.00 32.13 3.06
3042 4201 1.528542 CTCCCGAGAGCCCGTATCA 60.529 63.158 0.00 0.00 32.13 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.