Multiple sequence alignment - TraesCS6B01G361500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G361500 chr6B 100.000 6156 0 0 1 6156 632961061 632967216 0.000000e+00 11369.0
1 TraesCS6B01G361500 chr6B 85.714 98 12 2 4853 4950 646201686 646201781 1.090000e-17 102.0
2 TraesCS6B01G361500 chr6D 91.246 2833 156 44 889 3657 420009581 420012385 0.000000e+00 3773.0
3 TraesCS6B01G361500 chr6D 95.743 1574 51 10 3439 5000 420012380 420013949 0.000000e+00 2521.0
4 TraesCS6B01G361500 chr6D 88.935 1202 68 26 4999 6156 420014042 420015222 0.000000e+00 1423.0
5 TraesCS6B01G361500 chr6D 84.015 269 11 8 661 905 420009269 420009529 4.800000e-56 230.0
6 TraesCS6B01G361500 chr6D 86.667 90 12 0 4876 4965 391925896 391925985 3.930000e-17 100.0
7 TraesCS6B01G361500 chr6D 95.000 40 2 0 3674 3713 420012654 420012693 5.150000e-06 63.9
8 TraesCS6B01G361500 chr6A 91.738 2578 127 42 3631 6156 563129547 563132090 0.000000e+00 3502.0
9 TraesCS6B01G361500 chr6A 95.462 1190 35 9 2302 3473 563128017 563129205 0.000000e+00 1881.0
10 TraesCS6B01G361500 chr6A 86.705 1745 133 45 600 2270 563126194 563127913 0.000000e+00 1845.0
11 TraesCS6B01G361500 chr6A 96.721 122 3 1 3439 3559 563129428 563129549 1.050000e-47 202.0
12 TraesCS6B01G361500 chr6A 96.739 92 2 1 3530 3620 563129200 563129291 1.070000e-32 152.0
13 TraesCS6B01G361500 chr2B 93.963 381 20 3 1 380 651356505 651356883 1.920000e-159 573.0
14 TraesCS6B01G361500 chr2B 83.007 459 57 12 1378 1820 753389238 753389691 4.470000e-106 396.0
15 TraesCS6B01G361500 chr2B 84.821 112 16 1 4858 4969 169856259 169856149 1.810000e-20 111.0
16 TraesCS6B01G361500 chr7D 94.149 376 19 3 3 377 413996603 413996230 2.490000e-158 569.0
17 TraesCS6B01G361500 chr5D 93.899 377 20 3 1 376 395296734 395297108 3.220000e-157 566.0
18 TraesCS6B01G361500 chr5D 93.438 381 22 3 1 379 111943205 111943584 4.170000e-156 562.0
19 TraesCS6B01G361500 chr5D 95.420 131 6 0 5873 6003 482311555 482311425 6.250000e-50 209.0
20 TraesCS6B01G361500 chr5D 95.312 128 6 0 5873 6000 482311912 482312039 2.910000e-48 204.0
21 TraesCS6B01G361500 chr5D 93.750 128 8 0 5873 6000 178910266 178910393 6.300000e-45 193.0
22 TraesCS6B01G361500 chr5D 93.750 128 8 0 5873 6000 307933807 307933934 6.300000e-45 193.0
23 TraesCS6B01G361500 chr3D 93.369 377 23 2 1 376 15914237 15913862 1.940000e-154 556.0
24 TraesCS6B01G361500 chr3D 92.583 391 24 5 1 388 599230947 599231335 1.940000e-154 556.0
25 TraesCS6B01G361500 chr3D 94.656 131 7 0 5873 6003 424687097 424686967 2.910000e-48 204.0
26 TraesCS6B01G361500 chr1D 93.158 380 22 2 1 376 16390755 16391134 6.970000e-154 555.0
27 TraesCS6B01G361500 chr1D 93.158 380 23 3 1 379 296690803 296690426 6.970000e-154 555.0
28 TraesCS6B01G361500 chr1D 93.750 128 8 0 5873 6000 52102873 52103000 6.300000e-45 193.0
29 TraesCS6B01G361500 chr1D 83.636 110 17 1 4856 4965 106839622 106839514 1.090000e-17 102.0
30 TraesCS6B01G361500 chr7A 93.351 376 21 4 1 375 732520584 732520956 2.510000e-153 553.0
31 TraesCS6B01G361500 chr4B 83.992 481 53 15 1359 1820 67368667 67368192 2.040000e-119 440.0
32 TraesCS6B01G361500 chr4B 86.607 112 13 2 4855 4965 30729289 30729179 8.380000e-24 122.0
33 TraesCS6B01G361500 chr1B 83.576 481 55 17 1359 1820 38749911 38749436 4.410000e-116 429.0
34 TraesCS6B01G361500 chr1B 85.455 110 15 1 4856 4965 160325216 160325324 5.040000e-21 113.0
35 TraesCS6B01G361500 chr1B 90.625 64 6 0 1746 1809 160491102 160491165 1.100000e-12 86.1
36 TraesCS6B01G361500 chr2D 95.420 131 6 0 5873 6003 396726136 396726006 6.250000e-50 209.0
37 TraesCS6B01G361500 chr2D 81.667 120 19 3 4851 4968 473292191 473292309 5.080000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G361500 chr6B 632961061 632967216 6155 False 11369.00 11369 100.0000 1 6156 1 chr6B.!!$F1 6155
1 TraesCS6B01G361500 chr6D 420009269 420015222 5953 False 1602.18 3773 90.9878 661 6156 5 chr6D.!!$F2 5495
2 TraesCS6B01G361500 chr6A 563126194 563132090 5896 False 1516.40 3502 93.4730 600 6156 5 chr6A.!!$F1 5556

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 300 0.109532 TGGACTGCGGGTTGATTTCA 59.890 50.000 0.00 0.00 0.00 2.69 F
1387 1506 0.035152 TCTAGCCGTCCAACCTACGA 60.035 55.000 0.00 0.00 42.90 3.43 F
1581 1726 0.604578 CAGGCCAAACATGTGGGAAG 59.395 55.000 18.42 5.44 39.26 3.46 F
1825 1970 0.680921 TGCTTACTTGGGCATCAGGC 60.681 55.000 0.00 0.00 43.74 4.85 F
3038 3290 1.202110 CGAAGGTTGCACAGATGATGC 60.202 52.381 0.00 0.00 43.68 3.91 F
3577 3829 0.958382 GCCTGCCGTTGATTGGTGTA 60.958 55.000 0.00 0.00 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1875 2020 0.389025 GCACACCACCTTTTCCCAAG 59.611 55.000 0.00 0.00 0.00 3.61 R
2519 2769 0.980231 GGACAGCTCTCACCATCCCT 60.980 60.000 0.00 0.00 0.00 4.20 R
2525 2775 1.280421 AGGAATTGGACAGCTCTCACC 59.720 52.381 0.00 0.00 0.00 4.02 R
3534 3786 1.619654 CAAGATGACCAACAGGCCAA 58.380 50.000 5.01 0.00 0.00 4.52 R
4878 5602 1.070758 ACATCCAGTTGAGCGACAAGT 59.929 47.619 0.00 1.13 42.15 3.16 R
5513 6375 0.177373 GGTAGGTAAAGCAGGACGGG 59.823 60.000 0.00 0.00 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
166 167 8.583810 TCGGAGTTACGATTTAAAAGATATGG 57.416 34.615 0.00 0.00 38.06 2.74
167 168 8.415553 TCGGAGTTACGATTTAAAAGATATGGA 58.584 33.333 0.00 0.00 38.06 3.41
168 169 9.204570 CGGAGTTACGATTTAAAAGATATGGAT 57.795 33.333 0.00 0.00 35.47 3.41
207 208 8.798153 CATTTGTTTGACTTAAATAAGATCCGC 58.202 33.333 7.17 0.00 37.08 5.54
208 209 6.102006 TGTTTGACTTAAATAAGATCCGCG 57.898 37.500 0.00 0.00 37.08 6.46
209 210 5.064198 TGTTTGACTTAAATAAGATCCGCGG 59.936 40.000 22.12 22.12 37.08 6.46
210 211 4.659111 TGACTTAAATAAGATCCGCGGA 57.341 40.909 33.12 33.12 37.08 5.54
211 212 5.209818 TGACTTAAATAAGATCCGCGGAT 57.790 39.130 39.64 39.64 37.08 4.18
212 213 4.988540 TGACTTAAATAAGATCCGCGGATG 59.011 41.667 43.46 26.82 37.08 3.51
213 214 4.315803 ACTTAAATAAGATCCGCGGATGG 58.684 43.478 43.46 21.43 37.08 3.51
214 215 4.039973 ACTTAAATAAGATCCGCGGATGGA 59.960 41.667 43.46 27.32 38.34 3.41
215 216 3.485463 AAATAAGATCCGCGGATGGAA 57.515 42.857 43.46 27.03 42.46 3.53
216 217 3.703001 AATAAGATCCGCGGATGGAAT 57.297 42.857 43.46 27.93 42.46 3.01
217 218 4.819105 AATAAGATCCGCGGATGGAATA 57.181 40.909 43.46 27.62 42.46 1.75
218 219 5.359194 AATAAGATCCGCGGATGGAATAT 57.641 39.130 43.46 28.42 42.46 1.28
219 220 2.969628 AGATCCGCGGATGGAATATC 57.030 50.000 43.46 27.76 42.46 1.63
220 221 2.461695 AGATCCGCGGATGGAATATCT 58.538 47.619 43.46 29.52 42.46 1.98
221 222 3.632333 AGATCCGCGGATGGAATATCTA 58.368 45.455 43.46 11.76 42.46 1.98
222 223 4.023980 AGATCCGCGGATGGAATATCTAA 58.976 43.478 43.46 11.52 42.46 2.10
223 224 4.466370 AGATCCGCGGATGGAATATCTAAA 59.534 41.667 43.46 11.00 42.46 1.85
224 225 4.610605 TCCGCGGATGGAATATCTAAAA 57.389 40.909 27.28 0.00 34.30 1.52
225 226 4.963373 TCCGCGGATGGAATATCTAAAAA 58.037 39.130 27.28 0.00 34.30 1.94
226 227 4.994852 TCCGCGGATGGAATATCTAAAAAG 59.005 41.667 27.28 0.00 34.30 2.27
227 228 4.755123 CCGCGGATGGAATATCTAAAAAGT 59.245 41.667 24.07 0.00 0.00 2.66
228 229 5.107065 CCGCGGATGGAATATCTAAAAAGTC 60.107 44.000 24.07 0.00 0.00 3.01
229 230 5.465390 CGCGGATGGAATATCTAAAAAGTCA 59.535 40.000 0.00 0.00 0.00 3.41
230 231 6.346919 CGCGGATGGAATATCTAAAAAGTCAG 60.347 42.308 0.00 0.00 0.00 3.51
231 232 6.073003 GCGGATGGAATATCTAAAAAGTCAGG 60.073 42.308 0.00 0.00 0.00 3.86
232 233 6.992715 CGGATGGAATATCTAAAAAGTCAGGT 59.007 38.462 0.00 0.00 0.00 4.00
233 234 7.499232 CGGATGGAATATCTAAAAAGTCAGGTT 59.501 37.037 0.00 0.00 0.00 3.50
234 235 9.190317 GGATGGAATATCTAAAAAGTCAGGTTT 57.810 33.333 0.00 0.00 0.00 3.27
262 263 8.908172 TTTTCGAAAAACTGTAAAATAACGGT 57.092 26.923 20.56 0.00 40.75 4.83
264 265 8.545749 TTCGAAAAACTGTAAAATAACGGTTC 57.454 30.769 0.00 0.00 45.92 3.62
265 266 7.692088 TCGAAAAACTGTAAAATAACGGTTCA 58.308 30.769 0.00 0.00 45.92 3.18
266 267 8.180267 TCGAAAAACTGTAAAATAACGGTTCAA 58.820 29.630 0.00 0.00 45.92 2.69
267 268 8.960075 CGAAAAACTGTAAAATAACGGTTCAAT 58.040 29.630 0.00 0.00 45.92 2.57
269 270 7.631915 AAACTGTAAAATAACGGTTCAATGC 57.368 32.000 0.00 0.00 45.92 3.56
270 271 5.387279 ACTGTAAAATAACGGTTCAATGCG 58.613 37.500 0.00 0.00 35.39 4.73
271 272 5.179742 ACTGTAAAATAACGGTTCAATGCGA 59.820 36.000 0.00 0.00 35.39 5.10
272 273 5.383958 TGTAAAATAACGGTTCAATGCGAC 58.616 37.500 0.00 0.00 0.00 5.19
273 274 4.759516 AAAATAACGGTTCAATGCGACT 57.240 36.364 0.00 0.00 0.00 4.18
274 275 4.759516 AAATAACGGTTCAATGCGACTT 57.240 36.364 0.00 0.00 0.00 3.01
275 276 5.866335 AAATAACGGTTCAATGCGACTTA 57.134 34.783 0.00 0.00 0.00 2.24
276 277 5.866335 AATAACGGTTCAATGCGACTTAA 57.134 34.783 0.00 0.00 0.00 1.85
277 278 5.866335 ATAACGGTTCAATGCGACTTAAA 57.134 34.783 0.00 0.00 0.00 1.52
278 279 4.759516 AACGGTTCAATGCGACTTAAAT 57.240 36.364 0.00 0.00 0.00 1.40
279 280 4.336532 ACGGTTCAATGCGACTTAAATC 57.663 40.909 0.00 0.00 0.00 2.17
280 281 4.000988 ACGGTTCAATGCGACTTAAATCT 58.999 39.130 0.00 0.00 0.00 2.40
281 282 4.142902 ACGGTTCAATGCGACTTAAATCTG 60.143 41.667 0.00 0.00 0.00 2.90
282 283 4.662145 GGTTCAATGCGACTTAAATCTGG 58.338 43.478 0.00 0.00 0.00 3.86
283 284 4.394920 GGTTCAATGCGACTTAAATCTGGA 59.605 41.667 0.00 0.00 0.00 3.86
284 285 5.324697 GTTCAATGCGACTTAAATCTGGAC 58.675 41.667 0.00 0.00 0.00 4.02
285 286 4.832248 TCAATGCGACTTAAATCTGGACT 58.168 39.130 0.00 0.00 0.00 3.85
286 287 4.631377 TCAATGCGACTTAAATCTGGACTG 59.369 41.667 0.00 0.00 0.00 3.51
287 288 2.346803 TGCGACTTAAATCTGGACTGC 58.653 47.619 0.00 0.00 0.00 4.40
288 289 1.324736 GCGACTTAAATCTGGACTGCG 59.675 52.381 0.00 0.00 0.00 5.18
289 290 1.927174 CGACTTAAATCTGGACTGCGG 59.073 52.381 0.00 0.00 0.00 5.69
290 291 2.280628 GACTTAAATCTGGACTGCGGG 58.719 52.381 0.00 0.00 0.00 6.13
291 292 1.628846 ACTTAAATCTGGACTGCGGGT 59.371 47.619 0.00 0.00 0.00 5.28
292 293 2.039879 ACTTAAATCTGGACTGCGGGTT 59.960 45.455 0.00 0.00 0.00 4.11
293 294 2.107950 TAAATCTGGACTGCGGGTTG 57.892 50.000 0.00 0.00 0.00 3.77
294 295 0.400213 AAATCTGGACTGCGGGTTGA 59.600 50.000 0.00 0.00 0.00 3.18
295 296 0.620556 AATCTGGACTGCGGGTTGAT 59.379 50.000 0.00 0.00 0.00 2.57
296 297 0.620556 ATCTGGACTGCGGGTTGATT 59.379 50.000 0.00 0.00 0.00 2.57
297 298 0.400213 TCTGGACTGCGGGTTGATTT 59.600 50.000 0.00 0.00 0.00 2.17
298 299 0.804989 CTGGACTGCGGGTTGATTTC 59.195 55.000 0.00 0.00 0.00 2.17
299 300 0.109532 TGGACTGCGGGTTGATTTCA 59.890 50.000 0.00 0.00 0.00 2.69
300 301 1.271871 TGGACTGCGGGTTGATTTCAT 60.272 47.619 0.00 0.00 0.00 2.57
301 302 1.133025 GGACTGCGGGTTGATTTCATG 59.867 52.381 0.00 0.00 0.00 3.07
302 303 2.083774 GACTGCGGGTTGATTTCATGA 58.916 47.619 0.00 0.00 0.00 3.07
303 304 2.487762 GACTGCGGGTTGATTTCATGAA 59.512 45.455 3.38 3.38 0.00 2.57
304 305 2.890311 ACTGCGGGTTGATTTCATGAAA 59.110 40.909 22.52 22.52 34.46 2.69
305 306 3.320541 ACTGCGGGTTGATTTCATGAAAA 59.679 39.130 23.91 6.72 33.56 2.29
306 307 3.648009 TGCGGGTTGATTTCATGAAAAC 58.352 40.909 23.91 21.08 33.56 2.43
307 308 2.661195 GCGGGTTGATTTCATGAAAACG 59.339 45.455 23.91 19.53 33.56 3.60
308 309 2.661195 CGGGTTGATTTCATGAAAACGC 59.339 45.455 23.91 21.82 33.56 4.84
309 310 3.648009 GGGTTGATTTCATGAAAACGCA 58.352 40.909 23.91 18.25 33.56 5.24
310 311 3.674753 GGGTTGATTTCATGAAAACGCAG 59.325 43.478 23.91 0.00 33.56 5.18
311 312 3.674753 GGTTGATTTCATGAAAACGCAGG 59.325 43.478 23.91 0.00 33.56 4.85
312 313 3.574284 TGATTTCATGAAAACGCAGGG 57.426 42.857 23.91 0.00 33.56 4.45
313 314 2.230992 TGATTTCATGAAAACGCAGGGG 59.769 45.455 23.91 0.00 33.56 4.79
314 315 0.316841 TTTCATGAAAACGCAGGGGC 59.683 50.000 18.45 0.00 0.00 5.80
315 316 0.539438 TTCATGAAAACGCAGGGGCT 60.539 50.000 5.45 0.00 38.10 5.19
316 317 0.539438 TCATGAAAACGCAGGGGCTT 60.539 50.000 0.00 0.00 38.10 4.35
317 318 0.318120 CATGAAAACGCAGGGGCTTT 59.682 50.000 0.00 0.00 38.10 3.51
318 319 1.047801 ATGAAAACGCAGGGGCTTTT 58.952 45.000 0.00 0.00 42.54 2.27
338 339 2.950673 GCAAAATGGTGCGACGGA 59.049 55.556 0.00 0.00 34.21 4.69
339 340 1.506262 GCAAAATGGTGCGACGGAT 59.494 52.632 0.00 0.00 34.21 4.18
340 341 0.798009 GCAAAATGGTGCGACGGATG 60.798 55.000 0.00 0.00 34.21 3.51
341 342 0.179166 CAAAATGGTGCGACGGATGG 60.179 55.000 0.00 0.00 0.00 3.51
342 343 1.933115 AAAATGGTGCGACGGATGGC 61.933 55.000 0.00 0.00 0.00 4.40
343 344 3.620419 AATGGTGCGACGGATGGCA 62.620 57.895 0.00 0.00 37.19 4.92
344 345 4.758251 TGGTGCGACGGATGGCAG 62.758 66.667 0.00 0.00 40.59 4.85
345 346 4.451150 GGTGCGACGGATGGCAGA 62.451 66.667 0.00 0.00 40.59 4.26
346 347 2.434185 GTGCGACGGATGGCAGAA 60.434 61.111 0.00 0.00 40.59 3.02
347 348 2.032634 GTGCGACGGATGGCAGAAA 61.033 57.895 0.00 0.00 40.59 2.52
348 349 2.032634 TGCGACGGATGGCAGAAAC 61.033 57.895 0.00 0.00 34.20 2.78
349 350 2.750888 GCGACGGATGGCAGAAACC 61.751 63.158 0.00 0.00 0.00 3.27
350 351 2.106683 CGACGGATGGCAGAAACCC 61.107 63.158 0.00 0.00 0.00 4.11
351 352 1.299976 GACGGATGGCAGAAACCCT 59.700 57.895 0.00 0.00 0.00 4.34
352 353 0.539986 GACGGATGGCAGAAACCCTA 59.460 55.000 0.00 0.00 0.00 3.53
353 354 0.252197 ACGGATGGCAGAAACCCTAC 59.748 55.000 0.00 0.00 0.00 3.18
354 355 0.810031 CGGATGGCAGAAACCCTACG 60.810 60.000 0.00 0.00 0.00 3.51
355 356 0.252197 GGATGGCAGAAACCCTACGT 59.748 55.000 0.00 0.00 0.00 3.57
356 357 1.369625 GATGGCAGAAACCCTACGTG 58.630 55.000 0.00 0.00 0.00 4.49
357 358 0.676782 ATGGCAGAAACCCTACGTGC 60.677 55.000 0.00 0.00 0.00 5.34
358 359 1.003718 GGCAGAAACCCTACGTGCT 60.004 57.895 0.00 0.00 34.46 4.40
359 360 0.605589 GGCAGAAACCCTACGTGCTT 60.606 55.000 0.00 0.00 34.46 3.91
360 361 1.235724 GCAGAAACCCTACGTGCTTT 58.764 50.000 0.00 0.00 0.00 3.51
361 362 2.419667 GCAGAAACCCTACGTGCTTTA 58.580 47.619 0.00 0.00 0.00 1.85
362 363 3.007635 GCAGAAACCCTACGTGCTTTAT 58.992 45.455 0.00 0.00 0.00 1.40
363 364 3.439129 GCAGAAACCCTACGTGCTTTATT 59.561 43.478 0.00 0.00 0.00 1.40
364 365 4.632688 GCAGAAACCCTACGTGCTTTATTA 59.367 41.667 0.00 0.00 0.00 0.98
365 366 5.296035 GCAGAAACCCTACGTGCTTTATTAT 59.704 40.000 0.00 0.00 0.00 1.28
366 367 6.183360 GCAGAAACCCTACGTGCTTTATTATT 60.183 38.462 0.00 0.00 0.00 1.40
367 368 7.011669 GCAGAAACCCTACGTGCTTTATTATTA 59.988 37.037 0.00 0.00 0.00 0.98
368 369 8.548721 CAGAAACCCTACGTGCTTTATTATTAG 58.451 37.037 0.00 0.00 0.00 1.73
369 370 7.713942 AGAAACCCTACGTGCTTTATTATTAGG 59.286 37.037 0.00 0.00 0.00 2.69
370 371 6.490241 ACCCTACGTGCTTTATTATTAGGT 57.510 37.500 0.00 0.00 0.00 3.08
371 372 7.601705 ACCCTACGTGCTTTATTATTAGGTA 57.398 36.000 0.00 0.00 0.00 3.08
372 373 7.664758 ACCCTACGTGCTTTATTATTAGGTAG 58.335 38.462 0.00 0.00 32.50 3.18
373 374 7.506938 ACCCTACGTGCTTTATTATTAGGTAGA 59.493 37.037 0.00 0.00 33.78 2.59
374 375 8.027771 CCCTACGTGCTTTATTATTAGGTAGAG 58.972 40.741 0.00 0.00 33.78 2.43
375 376 8.790718 CCTACGTGCTTTATTATTAGGTAGAGA 58.209 37.037 0.00 0.00 33.78 3.10
416 417 8.715191 ATTTGAAAAGTAAAATGTGAGTTGCA 57.285 26.923 0.00 0.00 0.00 4.08
417 418 8.715191 TTTGAAAAGTAAAATGTGAGTTGCAT 57.285 26.923 0.00 0.00 0.00 3.96
418 419 7.697352 TGAAAAGTAAAATGTGAGTTGCATG 57.303 32.000 0.00 0.00 0.00 4.06
419 420 7.264221 TGAAAAGTAAAATGTGAGTTGCATGT 58.736 30.769 0.00 0.00 0.00 3.21
420 421 7.434897 TGAAAAGTAAAATGTGAGTTGCATGTC 59.565 33.333 0.00 0.00 0.00 3.06
421 422 6.389830 AAGTAAAATGTGAGTTGCATGTCA 57.610 33.333 0.00 0.00 0.00 3.58
422 423 6.579666 AGTAAAATGTGAGTTGCATGTCAT 57.420 33.333 2.11 0.00 0.00 3.06
423 424 7.686438 AGTAAAATGTGAGTTGCATGTCATA 57.314 32.000 2.11 0.43 0.00 2.15
424 425 8.109705 AGTAAAATGTGAGTTGCATGTCATAA 57.890 30.769 2.11 0.00 0.00 1.90
425 426 8.239314 AGTAAAATGTGAGTTGCATGTCATAAG 58.761 33.333 2.11 0.00 0.00 1.73
426 427 6.822667 AAATGTGAGTTGCATGTCATAAGA 57.177 33.333 2.11 0.00 0.00 2.10
427 428 6.822667 AATGTGAGTTGCATGTCATAAGAA 57.177 33.333 2.11 0.00 0.00 2.52
428 429 7.400599 AATGTGAGTTGCATGTCATAAGAAT 57.599 32.000 2.11 0.00 0.00 2.40
429 430 6.822667 TGTGAGTTGCATGTCATAAGAATT 57.177 33.333 2.11 0.00 0.00 2.17
430 431 6.614160 TGTGAGTTGCATGTCATAAGAATTG 58.386 36.000 2.11 0.00 0.00 2.32
431 432 6.207221 TGTGAGTTGCATGTCATAAGAATTGT 59.793 34.615 2.11 0.00 0.00 2.71
432 433 7.390162 TGTGAGTTGCATGTCATAAGAATTGTA 59.610 33.333 2.11 0.00 0.00 2.41
433 434 8.400947 GTGAGTTGCATGTCATAAGAATTGTAT 58.599 33.333 2.11 0.00 0.00 2.29
434 435 8.400186 TGAGTTGCATGTCATAAGAATTGTATG 58.600 33.333 0.00 0.00 0.00 2.39
435 436 7.709947 AGTTGCATGTCATAAGAATTGTATGG 58.290 34.615 0.00 0.00 31.13 2.74
436 437 6.075762 TGCATGTCATAAGAATTGTATGGC 57.924 37.500 0.00 4.17 34.74 4.40
437 438 5.009911 TGCATGTCATAAGAATTGTATGGCC 59.990 40.000 0.00 0.00 33.48 5.36
438 439 5.692814 CATGTCATAAGAATTGTATGGCCG 58.307 41.667 0.00 0.00 33.48 6.13
439 440 4.133820 TGTCATAAGAATTGTATGGCCGG 58.866 43.478 0.00 0.00 33.48 6.13
440 441 4.141597 TGTCATAAGAATTGTATGGCCGGA 60.142 41.667 5.05 0.00 33.48 5.14
441 442 5.003804 GTCATAAGAATTGTATGGCCGGAT 58.996 41.667 5.05 0.00 29.07 4.18
442 443 5.122396 GTCATAAGAATTGTATGGCCGGATC 59.878 44.000 5.05 0.00 29.07 3.36
443 444 2.568623 AGAATTGTATGGCCGGATCC 57.431 50.000 5.05 0.00 0.00 3.36
444 445 1.774254 AGAATTGTATGGCCGGATCCA 59.226 47.619 13.41 3.83 40.97 3.41
446 447 3.587061 AGAATTGTATGGCCGGATCCATA 59.413 43.478 14.81 14.81 44.60 2.74
452 453 3.524095 ATGGCCGGATCCATATTTTCA 57.476 42.857 13.41 0.19 44.60 2.69
453 454 3.304911 TGGCCGGATCCATATTTTCAA 57.695 42.857 13.41 0.00 0.00 2.69
454 455 3.843422 TGGCCGGATCCATATTTTCAAT 58.157 40.909 13.41 0.00 0.00 2.57
455 456 4.222336 TGGCCGGATCCATATTTTCAATT 58.778 39.130 13.41 0.00 0.00 2.32
456 457 4.653341 TGGCCGGATCCATATTTTCAATTT 59.347 37.500 13.41 0.00 0.00 1.82
457 458 5.130145 TGGCCGGATCCATATTTTCAATTTT 59.870 36.000 13.41 0.00 0.00 1.82
458 459 6.054941 GGCCGGATCCATATTTTCAATTTTT 58.945 36.000 13.41 0.00 0.00 1.94
487 488 9.602568 TCAATGATAGTTACTATTTTTACGGCA 57.397 29.630 6.33 0.00 0.00 5.69
495 496 9.609346 AGTTACTATTTTTACGGCATATGACTT 57.391 29.630 6.97 0.00 0.00 3.01
504 505 9.672086 TTTTACGGCATATGACTTATATTTTGC 57.328 29.630 6.97 0.00 29.37 3.68
505 506 8.615878 TTACGGCATATGACTTATATTTTGCT 57.384 30.769 6.97 0.00 29.60 3.91
506 507 9.713713 TTACGGCATATGACTTATATTTTGCTA 57.286 29.630 6.97 0.00 29.60 3.49
507 508 8.256611 ACGGCATATGACTTATATTTTGCTAG 57.743 34.615 6.97 0.00 29.60 3.42
508 509 7.878127 ACGGCATATGACTTATATTTTGCTAGT 59.122 33.333 6.97 0.00 29.60 2.57
509 510 8.721478 CGGCATATGACTTATATTTTGCTAGTT 58.279 33.333 6.97 0.00 29.60 2.24
524 525 7.949903 TTTGCTAGTTAAATTCGTACAGTCA 57.050 32.000 0.00 0.00 0.00 3.41
525 526 7.949903 TTGCTAGTTAAATTCGTACAGTCAA 57.050 32.000 0.00 0.00 0.00 3.18
526 527 7.949903 TGCTAGTTAAATTCGTACAGTCAAA 57.050 32.000 0.00 0.00 0.00 2.69
527 528 8.367943 TGCTAGTTAAATTCGTACAGTCAAAA 57.632 30.769 0.00 0.00 0.00 2.44
528 529 8.995220 TGCTAGTTAAATTCGTACAGTCAAAAT 58.005 29.630 0.00 0.00 0.00 1.82
529 530 9.262472 GCTAGTTAAATTCGTACAGTCAAAATG 57.738 33.333 0.00 0.00 0.00 2.32
532 533 8.073768 AGTTAAATTCGTACAGTCAAAATGTGG 58.926 33.333 0.00 0.00 32.02 4.17
533 534 3.889196 TTCGTACAGTCAAAATGTGGC 57.111 42.857 0.00 0.00 32.02 5.01
534 535 2.839975 TCGTACAGTCAAAATGTGGCA 58.160 42.857 0.00 0.00 32.63 4.92
535 536 3.407698 TCGTACAGTCAAAATGTGGCAT 58.592 40.909 0.00 0.00 32.63 4.40
536 537 4.570930 TCGTACAGTCAAAATGTGGCATA 58.429 39.130 0.00 0.00 32.63 3.14
537 538 4.998033 TCGTACAGTCAAAATGTGGCATAA 59.002 37.500 0.00 0.00 32.63 1.90
538 539 5.470437 TCGTACAGTCAAAATGTGGCATAAA 59.530 36.000 0.00 0.00 32.63 1.40
539 540 6.017026 TCGTACAGTCAAAATGTGGCATAAAA 60.017 34.615 0.00 0.00 32.63 1.52
540 541 6.806249 CGTACAGTCAAAATGTGGCATAAAAT 59.194 34.615 0.00 0.00 32.63 1.82
541 542 7.965655 CGTACAGTCAAAATGTGGCATAAAATA 59.034 33.333 0.00 0.00 32.63 1.40
542 543 9.072294 GTACAGTCAAAATGTGGCATAAAATAC 57.928 33.333 0.00 0.00 32.63 1.89
543 544 6.806249 ACAGTCAAAATGTGGCATAAAATACG 59.194 34.615 0.00 0.00 32.63 3.06
544 545 7.026562 CAGTCAAAATGTGGCATAAAATACGA 58.973 34.615 0.00 0.00 32.63 3.43
545 546 7.218773 CAGTCAAAATGTGGCATAAAATACGAG 59.781 37.037 0.00 0.00 32.63 4.18
546 547 6.472163 GTCAAAATGTGGCATAAAATACGAGG 59.528 38.462 0.00 0.00 0.00 4.63
547 548 5.514274 AAATGTGGCATAAAATACGAGGG 57.486 39.130 0.00 0.00 0.00 4.30
548 549 2.925724 TGTGGCATAAAATACGAGGGG 58.074 47.619 0.00 0.00 0.00 4.79
549 550 2.506231 TGTGGCATAAAATACGAGGGGA 59.494 45.455 0.00 0.00 0.00 4.81
550 551 2.876550 GTGGCATAAAATACGAGGGGAC 59.123 50.000 0.00 0.00 0.00 4.46
552 553 3.968649 TGGCATAAAATACGAGGGGACTA 59.031 43.478 0.00 0.00 44.43 2.59
553 554 4.409574 TGGCATAAAATACGAGGGGACTAA 59.590 41.667 0.00 0.00 44.43 2.24
554 555 5.072600 TGGCATAAAATACGAGGGGACTAAT 59.927 40.000 0.00 0.00 44.43 1.73
555 556 6.270463 TGGCATAAAATACGAGGGGACTAATA 59.730 38.462 0.00 0.00 44.43 0.98
556 557 7.163441 GGCATAAAATACGAGGGGACTAATAA 58.837 38.462 0.00 0.00 44.43 1.40
557 558 7.662669 GGCATAAAATACGAGGGGACTAATAAA 59.337 37.037 0.00 0.00 44.43 1.40
558 559 9.227777 GCATAAAATACGAGGGGACTAATAAAT 57.772 33.333 0.00 0.00 44.43 1.40
560 561 9.955102 ATAAAATACGAGGGGACTAATAAATCC 57.045 33.333 0.00 0.00 44.43 3.01
561 562 7.628501 AAATACGAGGGGACTAATAAATCCT 57.371 36.000 0.00 0.00 44.43 3.24
562 563 4.957684 ACGAGGGGACTAATAAATCCTG 57.042 45.455 0.00 0.00 44.43 3.86
563 564 4.553678 ACGAGGGGACTAATAAATCCTGA 58.446 43.478 0.00 0.00 44.43 3.86
564 565 5.155905 ACGAGGGGACTAATAAATCCTGAT 58.844 41.667 0.00 0.00 44.43 2.90
565 566 5.012148 ACGAGGGGACTAATAAATCCTGATG 59.988 44.000 0.00 0.00 44.43 3.07
566 567 5.246203 CGAGGGGACTAATAAATCCTGATGA 59.754 44.000 0.00 0.00 44.43 2.92
567 568 6.239600 CGAGGGGACTAATAAATCCTGATGAA 60.240 42.308 0.00 0.00 44.43 2.57
568 569 7.084268 AGGGGACTAATAAATCCTGATGAAG 57.916 40.000 0.00 0.00 40.61 3.02
569 570 5.707764 GGGGACTAATAAATCCTGATGAAGC 59.292 44.000 0.00 0.00 35.15 3.86
570 571 5.409826 GGGACTAATAAATCCTGATGAAGCG 59.590 44.000 0.00 0.00 35.15 4.68
571 572 6.223852 GGACTAATAAATCCTGATGAAGCGA 58.776 40.000 0.00 0.00 31.75 4.93
572 573 6.876257 GGACTAATAAATCCTGATGAAGCGAT 59.124 38.462 0.00 0.00 31.75 4.58
573 574 7.389053 GGACTAATAAATCCTGATGAAGCGATT 59.611 37.037 0.00 0.00 31.15 3.34
574 575 9.424319 GACTAATAAATCCTGATGAAGCGATTA 57.576 33.333 0.00 0.00 30.28 1.75
575 576 9.209175 ACTAATAAATCCTGATGAAGCGATTAC 57.791 33.333 0.00 0.00 30.28 1.89
576 577 9.429359 CTAATAAATCCTGATGAAGCGATTACT 57.571 33.333 0.00 0.00 30.28 2.24
578 579 8.994429 ATAAATCCTGATGAAGCGATTACTAG 57.006 34.615 0.00 0.00 30.28 2.57
579 580 6.412362 AATCCTGATGAAGCGATTACTAGT 57.588 37.500 0.00 0.00 29.29 2.57
580 581 7.526142 AATCCTGATGAAGCGATTACTAGTA 57.474 36.000 0.00 0.00 29.29 1.82
581 582 6.561737 TCCTGATGAAGCGATTACTAGTAG 57.438 41.667 2.23 0.00 0.00 2.57
582 583 6.062749 TCCTGATGAAGCGATTACTAGTAGT 58.937 40.000 8.14 8.14 0.00 2.73
583 584 6.546403 TCCTGATGAAGCGATTACTAGTAGTT 59.454 38.462 8.40 0.00 0.00 2.24
584 585 7.068348 TCCTGATGAAGCGATTACTAGTAGTTT 59.932 37.037 8.40 0.00 0.00 2.66
585 586 7.707035 CCTGATGAAGCGATTACTAGTAGTTTT 59.293 37.037 8.40 0.00 0.00 2.43
586 587 8.630278 TGATGAAGCGATTACTAGTAGTTTTC 57.370 34.615 8.40 5.25 0.00 2.29
587 588 8.467598 TGATGAAGCGATTACTAGTAGTTTTCT 58.532 33.333 8.40 0.00 0.00 2.52
588 589 9.303537 GATGAAGCGATTACTAGTAGTTTTCTT 57.696 33.333 8.40 5.59 0.00 2.52
660 661 2.383527 CCCGCGAGAGTTGAACTGC 61.384 63.158 8.23 0.00 0.00 4.40
662 663 1.347817 CCGCGAGAGTTGAACTGCTC 61.348 60.000 8.23 8.45 0.00 4.26
713 714 0.592148 CGGTCACTATCGAGTAGGGC 59.408 60.000 0.00 0.00 33.59 5.19
742 743 1.680338 AAAGCAACAGAACGGAGCTT 58.320 45.000 0.00 0.00 46.49 3.74
770 771 3.207474 CTGTCATGTAAAACAGCTGGC 57.793 47.619 19.93 3.24 36.76 4.85
818 844 3.437049 CGAGGAGGAAAGCAAGGTAAAAG 59.563 47.826 0.00 0.00 0.00 2.27
820 846 5.061721 AGGAGGAAAGCAAGGTAAAAGAA 57.938 39.130 0.00 0.00 0.00 2.52
821 847 5.454966 AGGAGGAAAGCAAGGTAAAAGAAA 58.545 37.500 0.00 0.00 0.00 2.52
823 849 6.040955 AGGAGGAAAGCAAGGTAAAAGAAAAG 59.959 38.462 0.00 0.00 0.00 2.27
1060 1167 1.440938 CCGTACTCTCTCGCTCCCTG 61.441 65.000 0.00 0.00 0.00 4.45
1092 1199 4.244802 CTCTCCCTCGCGTCGCTC 62.245 72.222 16.36 0.00 0.00 5.03
1126 1233 4.209866 ATCGGCTGGATTGGGCCC 62.210 66.667 17.59 17.59 45.01 5.80
1145 1252 4.821589 CCTTCTCCTCGCCGGTGC 62.822 72.222 11.05 0.00 0.00 5.01
1146 1253 4.821589 CTTCTCCTCGCCGGTGCC 62.822 72.222 11.05 0.00 0.00 5.01
1227 1334 2.175811 GTCACAAATCGTGGCGCC 59.824 61.111 22.73 22.73 46.36 6.53
1241 1348 4.979204 CGCCAGAAGGTGTCGTTA 57.021 55.556 0.00 0.00 40.63 3.18
1259 1367 8.627428 GTGTCGTTAATTGCTGAATTTAGTTTC 58.373 33.333 0.00 0.00 33.63 2.78
1271 1379 0.947180 TTAGTTTCGCGGTGTCAGCC 60.947 55.000 6.13 0.00 0.00 4.85
1272 1380 2.775032 TAGTTTCGCGGTGTCAGCCC 62.775 60.000 6.13 0.00 0.00 5.19
1313 1423 0.528684 AAGCGCAGAATCGACTAGCC 60.529 55.000 11.47 0.00 0.00 3.93
1318 1428 3.579709 CGCAGAATCGACTAGCCATATT 58.420 45.455 0.00 0.00 0.00 1.28
1332 1442 2.287769 CCATATTGCATGACCACGACA 58.712 47.619 0.00 0.00 0.00 4.35
1338 1448 2.984562 TGCATGACCACGACAATATGT 58.015 42.857 0.00 0.00 0.00 2.29
1339 1449 2.935849 TGCATGACCACGACAATATGTC 59.064 45.455 0.00 0.39 43.65 3.06
1349 1459 1.145156 CAATATGTCGCGTCCCCCA 59.855 57.895 5.77 0.00 0.00 4.96
1356 1475 1.985662 TCGCGTCCCCCAGTGTTAT 60.986 57.895 5.77 0.00 0.00 1.89
1377 1496 1.739067 ATGCTTGGTTTCTAGCCGTC 58.261 50.000 0.00 0.00 40.24 4.79
1380 1499 1.880646 GCTTGGTTTCTAGCCGTCCAA 60.881 52.381 0.00 0.00 36.09 3.53
1381 1500 1.804748 CTTGGTTTCTAGCCGTCCAAC 59.195 52.381 0.00 0.00 34.93 3.77
1382 1501 0.035739 TGGTTTCTAGCCGTCCAACC 59.964 55.000 0.00 0.00 37.92 3.77
1383 1502 0.323957 GGTTTCTAGCCGTCCAACCT 59.676 55.000 0.00 0.00 35.05 3.50
1386 1505 0.813184 TTCTAGCCGTCCAACCTACG 59.187 55.000 0.00 0.00 40.01 3.51
1387 1506 0.035152 TCTAGCCGTCCAACCTACGA 60.035 55.000 0.00 0.00 42.90 3.43
1388 1507 1.030457 CTAGCCGTCCAACCTACGAT 58.970 55.000 0.00 0.00 42.90 3.73
1389 1508 0.742505 TAGCCGTCCAACCTACGATG 59.257 55.000 0.00 0.00 42.90 3.84
1392 1511 1.922570 CCGTCCAACCTACGATGAAG 58.077 55.000 0.00 0.00 42.90 3.02
1422 1552 6.270064 GCTAAGCTTTGGTGTCTTGTTTTTA 58.730 36.000 3.20 0.00 0.00 1.52
1424 1554 8.079809 GCTAAGCTTTGGTGTCTTGTTTTTATA 58.920 33.333 3.20 0.00 0.00 0.98
1484 1614 1.740332 TTGTGCTGACGGTCGAGGAA 61.740 55.000 3.34 0.00 0.00 3.36
1494 1624 1.000060 CGGTCGAGGAACAGGTTTGTA 60.000 52.381 0.00 0.00 36.23 2.41
1495 1625 2.353406 CGGTCGAGGAACAGGTTTGTAT 60.353 50.000 0.00 0.00 36.23 2.29
1496 1626 3.671716 GGTCGAGGAACAGGTTTGTATT 58.328 45.455 0.00 0.00 36.23 1.89
1497 1627 4.070009 GGTCGAGGAACAGGTTTGTATTT 58.930 43.478 0.00 0.00 36.23 1.40
1498 1628 4.517832 GGTCGAGGAACAGGTTTGTATTTT 59.482 41.667 0.00 0.00 36.23 1.82
1499 1629 5.334646 GGTCGAGGAACAGGTTTGTATTTTC 60.335 44.000 0.00 0.00 36.23 2.29
1500 1630 5.469084 GTCGAGGAACAGGTTTGTATTTTCT 59.531 40.000 0.00 0.00 36.23 2.52
1502 1632 6.204108 TCGAGGAACAGGTTTGTATTTTCTTC 59.796 38.462 0.00 0.00 36.23 2.87
1503 1633 6.204882 CGAGGAACAGGTTTGTATTTTCTTCT 59.795 38.462 0.00 0.00 36.23 2.85
1504 1634 7.255139 CGAGGAACAGGTTTGTATTTTCTTCTT 60.255 37.037 0.00 0.00 36.23 2.52
1505 1635 7.941919 AGGAACAGGTTTGTATTTTCTTCTTC 58.058 34.615 0.00 0.00 36.23 2.87
1511 1651 8.624776 CAGGTTTGTATTTTCTTCTTCTTCTGT 58.375 33.333 0.00 0.00 0.00 3.41
1512 1652 8.841300 AGGTTTGTATTTTCTTCTTCTTCTGTC 58.159 33.333 0.00 0.00 0.00 3.51
1518 1658 3.340814 TCTTCTTCTTCTGTCATGGCC 57.659 47.619 0.00 0.00 0.00 5.36
1522 1662 1.558756 CTTCTTCTGTCATGGCCTCCT 59.441 52.381 3.32 0.00 0.00 3.69
1523 1663 2.550277 TCTTCTGTCATGGCCTCCTA 57.450 50.000 3.32 0.00 0.00 2.94
1525 1665 3.387962 TCTTCTGTCATGGCCTCCTATT 58.612 45.455 3.32 0.00 0.00 1.73
1532 1677 6.382282 TCTGTCATGGCCTCCTATTGATATAG 59.618 42.308 3.32 0.00 34.67 1.31
1553 1698 7.986085 ATAGTGTGATTGCTAACTGAACTTT 57.014 32.000 0.00 0.00 0.00 2.66
1556 1701 6.318648 AGTGTGATTGCTAACTGAACTTTTGA 59.681 34.615 0.00 0.00 0.00 2.69
1581 1726 0.604578 CAGGCCAAACATGTGGGAAG 59.395 55.000 18.42 5.44 39.26 3.46
1585 1730 2.158827 GGCCAAACATGTGGGAAGTTTT 60.159 45.455 18.42 0.00 39.26 2.43
1591 1736 2.091333 ACATGTGGGAAGTTTTGGAGGT 60.091 45.455 0.00 0.00 0.00 3.85
1609 1754 3.152341 AGGTGCTTTGACCAAGAATCTG 58.848 45.455 0.00 0.00 38.63 2.90
1624 1769 5.690464 AGAATCTGCTTCTGAAGGTATGT 57.310 39.130 18.38 0.00 42.76 2.29
1625 1770 5.426504 AGAATCTGCTTCTGAAGGTATGTG 58.573 41.667 18.38 0.00 42.76 3.21
1629 1774 3.664107 TGCTTCTGAAGGTATGTGTGTC 58.336 45.455 18.38 0.00 0.00 3.67
1641 1786 1.518325 TGTGTGTCGGCAACTAATGG 58.482 50.000 0.00 0.00 0.00 3.16
1646 1791 1.087771 GTCGGCAACTAATGGACGGG 61.088 60.000 0.00 0.00 0.00 5.28
1647 1792 2.469516 CGGCAACTAATGGACGGGC 61.470 63.158 0.00 0.00 0.00 6.13
1653 1798 3.243068 GCAACTAATGGACGGGCTAATTG 60.243 47.826 0.00 0.00 0.00 2.32
1657 1802 4.652421 ACTAATGGACGGGCTAATTGTAGA 59.348 41.667 0.00 0.00 0.00 2.59
1658 1803 3.753294 ATGGACGGGCTAATTGTAGAG 57.247 47.619 0.00 0.00 0.00 2.43
1670 1815 6.706295 GCTAATTGTAGAGAGCCCAATAGAT 58.294 40.000 0.00 0.00 0.00 1.98
1671 1816 6.593382 GCTAATTGTAGAGAGCCCAATAGATG 59.407 42.308 0.00 0.00 0.00 2.90
1672 1817 6.506538 AATTGTAGAGAGCCCAATAGATGT 57.493 37.500 0.00 0.00 0.00 3.06
1673 1818 4.944619 TGTAGAGAGCCCAATAGATGTG 57.055 45.455 0.00 0.00 0.00 3.21
1674 1819 4.290093 TGTAGAGAGCCCAATAGATGTGT 58.710 43.478 0.00 0.00 0.00 3.72
1675 1820 5.454966 TGTAGAGAGCCCAATAGATGTGTA 58.545 41.667 0.00 0.00 0.00 2.90
1676 1821 6.077993 TGTAGAGAGCCCAATAGATGTGTAT 58.922 40.000 0.00 0.00 0.00 2.29
1677 1822 5.736951 AGAGAGCCCAATAGATGTGTATC 57.263 43.478 0.00 0.00 0.00 2.24
1679 1824 6.556639 AGAGAGCCCAATAGATGTGTATCTA 58.443 40.000 0.00 0.00 46.84 1.98
1725 1870 1.442769 TTCAGGACAAGAAGCATCGC 58.557 50.000 0.00 0.00 0.00 4.58
1784 1929 7.389053 AGTTGACATGAAAAGTAGGTGAATCTC 59.611 37.037 0.00 0.00 0.00 2.75
1789 1934 5.794894 TGAAAAGTAGGTGAATCTCCTGAC 58.205 41.667 13.64 8.07 36.60 3.51
1794 1939 5.446860 AGTAGGTGAATCTCCTGACGATTA 58.553 41.667 13.64 0.00 36.60 1.75
1825 1970 0.680921 TGCTTACTTGGGCATCAGGC 60.681 55.000 0.00 0.00 43.74 4.85
1875 2020 2.731691 TTCTGTCCCAGCGTCTTGGC 62.732 60.000 0.00 0.00 36.88 4.52
1896 2041 1.527380 GGGAAAAGGTGGTGTGCGA 60.527 57.895 0.00 0.00 0.00 5.10
1956 2101 3.441222 TCTGCCTGTTTATGATGCTGTTG 59.559 43.478 0.00 0.00 0.00 3.33
2333 2561 3.211045 TGTTGGTTAGCTCACTTGTTCC 58.789 45.455 0.00 0.00 0.00 3.62
2338 2566 3.498777 GGTTAGCTCACTTGTTCCACTTC 59.501 47.826 0.00 0.00 0.00 3.01
2345 2573 5.812127 GCTCACTTGTTCCACTTCAAAAATT 59.188 36.000 0.00 0.00 0.00 1.82
2350 2578 8.063630 CACTTGTTCCACTTCAAAAATTTATGC 58.936 33.333 0.00 0.00 0.00 3.14
2489 2739 5.819379 TCTGCTAGCCATAATCTTGTTTCTG 59.181 40.000 13.29 0.00 0.00 3.02
2519 2769 9.187996 TCAAGCCATAATTTTGACAGATTGATA 57.812 29.630 0.00 0.00 0.00 2.15
2545 2795 1.280421 GGTGAGAGCTGTCCAATTCCT 59.720 52.381 8.62 0.00 0.00 3.36
2596 2846 1.674359 TGATGTTCCGCGCCATTATT 58.326 45.000 0.00 0.00 0.00 1.40
2614 2864 5.855740 TTATTTCATCATGAGCATGGCAA 57.144 34.783 10.31 0.00 39.24 4.52
2656 2906 7.782644 TCCCCATGGTTAAGTTTGAATATTAGG 59.217 37.037 11.73 0.00 0.00 2.69
2708 2958 5.178067 GCAAGCTTATTTCAATGTGCTTTGT 59.822 36.000 0.00 0.00 36.70 2.83
2763 3013 6.635030 ATCTTTATTCTTATTGCGTTCCCC 57.365 37.500 0.00 0.00 0.00 4.81
2780 3032 5.295045 CGTTCCCCAGTAATATGTTGTTACC 59.705 44.000 0.00 0.00 33.55 2.85
2931 3183 8.912988 ACTTCCTTCACTTAAAATGTTTCATCA 58.087 29.630 0.00 0.00 0.00 3.07
3009 3261 1.753848 TTGCCTTCCCATGATGCCG 60.754 57.895 0.00 0.00 0.00 5.69
3038 3290 1.202110 CGAAGGTTGCACAGATGATGC 60.202 52.381 0.00 0.00 43.68 3.91
3089 3341 6.065374 TCTGCAAACAATTAAGGGACACTTA 58.935 36.000 0.00 0.00 40.64 2.24
3104 3356 5.983118 GGGACACTTAACACCAAAATCTTTG 59.017 40.000 0.00 0.00 0.00 2.77
3155 3407 2.639347 TCATCTCAGCCCTCAGTTCAAA 59.361 45.455 0.00 0.00 0.00 2.69
3216 3468 4.442192 CCAGCTTATGTAGACTTGGAGGTC 60.442 50.000 0.00 0.00 36.56 3.85
3419 3671 2.546789 CCTCAAGTCAACGTACCCAAAC 59.453 50.000 0.00 0.00 0.00 2.93
3427 3679 3.063725 TCAACGTACCCAAACAGAAAACG 59.936 43.478 0.00 0.00 35.17 3.60
3577 3829 0.958382 GCCTGCCGTTGATTGGTGTA 60.958 55.000 0.00 0.00 0.00 2.90
3651 4362 4.649674 ACATGGAGATACGTGATGGTACTT 59.350 41.667 0.00 0.00 0.00 2.24
3683 4394 7.922811 CACAAGTATCATAGTTAGTCATGCTGA 59.077 37.037 0.00 0.00 0.00 4.26
3720 4431 4.009675 TGAACTATGCCCAAGTCATGTTC 58.990 43.478 0.00 0.00 35.30 3.18
3749 4460 6.214191 TCTGAAGTTCTGAACTATGCCTAG 57.786 41.667 22.30 13.73 41.91 3.02
3816 4529 1.552792 GAACTAGGGTTGAGAGCTGCT 59.447 52.381 0.00 0.00 35.58 4.24
3863 4576 2.360801 GAGCAAACAAGCACCCTGTTTA 59.639 45.455 0.96 0.00 34.47 2.01
3909 4622 3.003480 GCAAGAGAATACACCACCTGTC 58.997 50.000 0.00 0.00 33.91 3.51
4032 4745 9.632807 CATTTTTCGTTCCTTATTGTTTATCCA 57.367 29.630 0.00 0.00 0.00 3.41
4163 4876 2.666317 CCCAAAGTTCAGAACAAGGGT 58.334 47.619 21.29 0.00 35.53 4.34
4340 5057 7.386059 TGTGTTGATAAGTATTCTCTTGCAGA 58.614 34.615 0.00 0.00 0.00 4.26
4534 5254 7.069826 AGAGAGAATTGAATCTCCTGGTAGAAG 59.930 40.741 7.84 0.00 45.70 2.85
4586 5306 5.665916 AATCCCAATGTTAGCTTGAAAGG 57.334 39.130 0.00 0.00 0.00 3.11
4617 5337 1.350019 CCCAAGTTACCTCCGTCCTTT 59.650 52.381 0.00 0.00 0.00 3.11
4656 5376 9.866655 AAAAGGCTATATGATGAATTAACCTGA 57.133 29.630 0.00 0.00 0.00 3.86
4733 5453 8.331931 ACCTCCTGGTGTCTGAATTATATTTA 57.668 34.615 0.00 0.00 46.51 1.40
4789 5513 4.079787 AGCTCCCCTTGCTTGTATGATTTA 60.080 41.667 0.00 0.00 37.52 1.40
4869 5593 6.154021 TGCCCCTATATAATACTTTCTCCGTC 59.846 42.308 0.00 0.00 0.00 4.79
4899 5623 2.146342 CTTGTCGCTCAACTGGATGTT 58.854 47.619 0.00 0.00 39.92 2.71
4902 5626 1.464997 GTCGCTCAACTGGATGTTTCC 59.535 52.381 0.00 0.00 42.94 3.13
4952 5676 3.250744 CTTGAGCGTCAAGTAATTCCGA 58.749 45.455 15.37 0.00 46.50 4.55
4957 5681 2.331194 CGTCAAGTAATTCCGAACGGT 58.669 47.619 12.93 0.00 36.47 4.83
4980 5706 7.066525 CGGTGGGAGTATAACAAATAAACATGT 59.933 37.037 0.00 0.00 0.00 3.21
4985 5711 9.391006 GGAGTATAACAAATAAACATGTGGAGA 57.609 33.333 0.00 0.00 0.00 3.71
5107 5927 0.449388 CAGGATTTCACGCTGGCTTC 59.551 55.000 0.00 0.00 0.00 3.86
5146 5966 0.919710 GTTTAGGTGGGATGCCCTCT 59.080 55.000 0.00 0.37 45.70 3.69
5157 5977 2.548920 GGATGCCCTCTCGGAAATAGTG 60.549 54.545 0.00 0.00 0.00 2.74
5163 5983 3.453353 CCCTCTCGGAAATAGTGGGTTAA 59.547 47.826 0.00 0.00 41.11 2.01
5164 5984 4.102681 CCCTCTCGGAAATAGTGGGTTAAT 59.897 45.833 0.00 0.00 41.11 1.40
5166 5986 5.758784 CCTCTCGGAAATAGTGGGTTAATTC 59.241 44.000 0.00 0.00 0.00 2.17
5179 5999 8.480133 AGTGGGTTAATTCGATATAGAAGACT 57.520 34.615 4.55 0.00 33.19 3.24
5185 6005 9.953697 GTTAATTCGATATAGAAGACTGTGAGT 57.046 33.333 4.55 0.00 33.19 3.41
5213 6033 4.837860 TCAGTCAATTTTTGTATGCCCCTT 59.162 37.500 0.00 0.00 0.00 3.95
5228 6048 3.906846 TGCCCCTTGGTGTAAAATCAAAT 59.093 39.130 0.00 0.00 0.00 2.32
5286 6106 5.527214 CGATTGAATGTATCACCTTAAGCCA 59.473 40.000 0.00 0.00 37.92 4.75
5312 6159 3.796178 TGATTGCTTTCACGTTTTGCTTC 59.204 39.130 0.00 0.00 0.00 3.86
5319 6166 5.660629 TTTCACGTTTTGCTTCGAGATTA 57.339 34.783 0.00 0.00 0.00 1.75
5320 6167 4.640805 TCACGTTTTGCTTCGAGATTAC 57.359 40.909 0.00 0.00 0.00 1.89
5328 6175 1.858091 CTTCGAGATTACCTGCGCAT 58.142 50.000 12.24 0.00 0.00 4.73
5353 6200 3.070159 TGCTTCAGCCGCTAGATAAATCT 59.930 43.478 0.00 0.00 41.18 2.40
5354 6201 4.280929 TGCTTCAGCCGCTAGATAAATCTA 59.719 41.667 0.00 0.02 41.18 1.98
5397 6259 6.370442 TCTGTATCGTTTACATTTTGAGTGGG 59.630 38.462 2.32 0.00 0.00 4.61
5418 6280 3.168193 GACGATTACATTTTGGCCGTTG 58.832 45.455 0.00 0.00 0.00 4.10
5426 6288 1.078759 TTTTGGCCGTTGTTTGCACG 61.079 50.000 0.00 0.00 0.00 5.34
5444 6306 8.609176 GTTTGCACGATTACATTCTCCTATTTA 58.391 33.333 0.00 0.00 0.00 1.40
5493 6355 0.887933 ATCCACCATTGCCGTTGAAC 59.112 50.000 0.00 0.00 0.00 3.18
5494 6356 0.179004 TCCACCATTGCCGTTGAACT 60.179 50.000 0.00 0.00 0.00 3.01
5495 6357 0.240945 CCACCATTGCCGTTGAACTC 59.759 55.000 0.00 0.00 0.00 3.01
5496 6358 0.110238 CACCATTGCCGTTGAACTCG 60.110 55.000 0.00 0.00 0.00 4.18
5497 6359 1.154225 CCATTGCCGTTGAACTCGC 60.154 57.895 0.00 0.00 0.00 5.03
5498 6360 1.577328 CCATTGCCGTTGAACTCGCT 61.577 55.000 5.96 0.00 0.00 4.93
5499 6361 0.453282 CATTGCCGTTGAACTCGCTG 60.453 55.000 5.96 0.00 0.00 5.18
5500 6362 0.602638 ATTGCCGTTGAACTCGCTGA 60.603 50.000 5.96 0.00 0.00 4.26
5511 6373 6.478588 GTTGAACTCGCTGAATATTTACAGG 58.521 40.000 6.36 0.00 35.05 4.00
5513 6375 3.467803 ACTCGCTGAATATTTACAGGGC 58.532 45.455 13.40 0.00 43.45 5.19
5515 6377 1.880027 CGCTGAATATTTACAGGGCCC 59.120 52.381 16.46 16.46 39.41 5.80
5519 6381 2.158726 TGAATATTTACAGGGCCCGTCC 60.159 50.000 18.44 0.00 0.00 4.79
5530 6392 1.619807 GGCCCGTCCTGCTTTACCTA 61.620 60.000 0.00 0.00 0.00 3.08
5540 6402 5.941647 GTCCTGCTTTACCTACCATTAACAA 59.058 40.000 0.00 0.00 0.00 2.83
5542 6404 5.708230 CCTGCTTTACCTACCATTAACAACA 59.292 40.000 0.00 0.00 0.00 3.33
5544 6406 6.972722 TGCTTTACCTACCATTAACAACAAC 58.027 36.000 0.00 0.00 0.00 3.32
5547 6409 7.513371 TTTACCTACCATTAACAACAACCAG 57.487 36.000 0.00 0.00 0.00 4.00
5548 6410 3.824443 ACCTACCATTAACAACAACCAGC 59.176 43.478 0.00 0.00 0.00 4.85
5549 6411 3.119990 CCTACCATTAACAACAACCAGCG 60.120 47.826 0.00 0.00 0.00 5.18
5556 6418 3.518634 AACAACAACCAGCGAAATGTT 57.481 38.095 0.00 0.00 36.49 2.71
5573 6435 2.469826 TGTTGAGTCAGTAAGCGTGTG 58.530 47.619 0.00 0.00 0.00 3.82
5614 6476 0.317799 TGATTTGCAAGCACGGCATT 59.682 45.000 0.00 0.00 41.58 3.56
5641 6503 5.466728 TCAGATGACTTAACTGAGCAAACAC 59.533 40.000 0.00 0.00 36.04 3.32
5663 6525 1.873698 TCAGGTTGTCTTTGGCGTAC 58.126 50.000 0.00 0.00 0.00 3.67
5677 6539 1.897423 CGTACTGACTGGCATCCCA 59.103 57.895 0.00 0.00 39.32 4.37
5730 6592 1.374252 ACCACGCGTAGAAAGCTGG 60.374 57.895 13.44 9.27 38.20 4.85
5743 6605 7.138736 CGTAGAAAGCTGGAAGAAAAATTCAA 58.861 34.615 0.00 0.00 34.07 2.69
5746 6608 8.791327 AGAAAGCTGGAAGAAAAATTCAAAAA 57.209 26.923 0.00 0.00 34.07 1.94
5747 6609 8.668353 AGAAAGCTGGAAGAAAAATTCAAAAAC 58.332 29.630 0.00 0.00 34.07 2.43
5749 6611 7.543947 AGCTGGAAGAAAAATTCAAAAACAG 57.456 32.000 0.00 0.00 34.07 3.16
5750 6612 7.330262 AGCTGGAAGAAAAATTCAAAAACAGA 58.670 30.769 0.00 0.00 34.07 3.41
5751 6613 7.278646 AGCTGGAAGAAAAATTCAAAAACAGAC 59.721 33.333 0.00 0.00 34.07 3.51
5752 6614 7.518731 TGGAAGAAAAATTCAAAAACAGACG 57.481 32.000 0.00 0.00 0.00 4.18
5775 6637 5.912396 CGAACAACTTAAAACAAGCATGCTA 59.088 36.000 23.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 127 9.800433 TCGTAACTCCGATTTAAACATGTTATA 57.200 29.630 12.39 4.12 30.63 0.98
127 128 8.706492 TCGTAACTCCGATTTAAACATGTTAT 57.294 30.769 12.39 1.27 30.63 1.89
128 129 8.706492 ATCGTAACTCCGATTTAAACATGTTA 57.294 30.769 12.39 0.00 44.72 2.41
129 130 7.605410 ATCGTAACTCCGATTTAAACATGTT 57.395 32.000 4.92 4.92 44.72 2.71
141 142 8.415553 TCCATATCTTTTAAATCGTAACTCCGA 58.584 33.333 0.00 0.00 41.73 4.55
142 143 8.583810 TCCATATCTTTTAAATCGTAACTCCG 57.416 34.615 0.00 0.00 0.00 4.63
181 182 8.798153 GCGGATCTTATTTAAGTCAAACAAATG 58.202 33.333 0.00 0.00 34.93 2.32
182 183 7.696453 CGCGGATCTTATTTAAGTCAAACAAAT 59.304 33.333 0.00 0.00 34.93 2.32
183 184 7.018826 CGCGGATCTTATTTAAGTCAAACAAA 58.981 34.615 0.00 0.00 34.93 2.83
184 185 6.402766 CCGCGGATCTTATTTAAGTCAAACAA 60.403 38.462 24.07 0.00 34.93 2.83
185 186 5.064198 CCGCGGATCTTATTTAAGTCAAACA 59.936 40.000 24.07 0.00 34.93 2.83
186 187 5.292589 TCCGCGGATCTTATTTAAGTCAAAC 59.707 40.000 27.28 0.00 34.93 2.93
187 188 5.421277 TCCGCGGATCTTATTTAAGTCAAA 58.579 37.500 27.28 0.00 34.93 2.69
188 189 5.013568 TCCGCGGATCTTATTTAAGTCAA 57.986 39.130 27.28 0.00 34.93 3.18
189 190 4.659111 TCCGCGGATCTTATTTAAGTCA 57.341 40.909 27.28 0.00 34.93 3.41
190 191 4.389077 CCATCCGCGGATCTTATTTAAGTC 59.611 45.833 37.10 0.00 34.93 3.01
191 192 4.039973 TCCATCCGCGGATCTTATTTAAGT 59.960 41.667 37.10 10.97 34.93 2.24
192 193 4.566004 TCCATCCGCGGATCTTATTTAAG 58.434 43.478 37.10 21.62 31.62 1.85
193 194 4.610605 TCCATCCGCGGATCTTATTTAA 57.389 40.909 37.10 13.45 31.62 1.52
194 195 4.610605 TTCCATCCGCGGATCTTATTTA 57.389 40.909 37.10 15.34 34.19 1.40
195 196 3.485463 TTCCATCCGCGGATCTTATTT 57.515 42.857 37.10 14.11 34.19 1.40
196 197 3.703001 ATTCCATCCGCGGATCTTATT 57.297 42.857 37.10 14.97 34.19 1.40
197 198 4.651503 AGATATTCCATCCGCGGATCTTAT 59.348 41.667 37.10 27.90 34.19 1.73
198 199 4.023980 AGATATTCCATCCGCGGATCTTA 58.976 43.478 37.10 23.76 34.19 2.10
199 200 2.834549 AGATATTCCATCCGCGGATCTT 59.165 45.455 37.10 22.55 34.19 2.40
200 201 2.461695 AGATATTCCATCCGCGGATCT 58.538 47.619 37.10 26.39 34.19 2.75
201 202 2.969628 AGATATTCCATCCGCGGATC 57.030 50.000 37.10 24.54 34.19 3.36
202 203 4.819105 TTTAGATATTCCATCCGCGGAT 57.181 40.909 34.60 34.60 34.19 4.18
203 204 4.610605 TTTTAGATATTCCATCCGCGGA 57.389 40.909 33.12 33.12 0.00 5.54
204 205 4.755123 ACTTTTTAGATATTCCATCCGCGG 59.245 41.667 22.12 22.12 0.00 6.46
205 206 5.465390 TGACTTTTTAGATATTCCATCCGCG 59.535 40.000 0.00 0.00 0.00 6.46
206 207 6.073003 CCTGACTTTTTAGATATTCCATCCGC 60.073 42.308 0.00 0.00 0.00 5.54
207 208 6.992715 ACCTGACTTTTTAGATATTCCATCCG 59.007 38.462 0.00 0.00 0.00 4.18
208 209 8.753497 AACCTGACTTTTTAGATATTCCATCC 57.247 34.615 0.00 0.00 0.00 3.51
236 237 9.351570 ACCGTTATTTTACAGTTTTTCGAAAAA 57.648 25.926 27.64 27.64 35.67 1.94
237 238 8.908172 ACCGTTATTTTACAGTTTTTCGAAAA 57.092 26.923 19.08 19.08 0.00 2.29
238 239 8.908172 AACCGTTATTTTACAGTTTTTCGAAA 57.092 26.923 6.47 6.47 0.00 3.46
239 240 8.180267 TGAACCGTTATTTTACAGTTTTTCGAA 58.820 29.630 0.00 0.00 0.00 3.71
240 241 7.692088 TGAACCGTTATTTTACAGTTTTTCGA 58.308 30.769 0.00 0.00 0.00 3.71
241 242 7.895582 TGAACCGTTATTTTACAGTTTTTCG 57.104 32.000 0.00 0.00 0.00 3.46
243 244 8.544597 GCATTGAACCGTTATTTTACAGTTTTT 58.455 29.630 0.00 0.00 0.00 1.94
244 245 7.096394 CGCATTGAACCGTTATTTTACAGTTTT 60.096 33.333 0.00 0.00 0.00 2.43
245 246 6.361214 CGCATTGAACCGTTATTTTACAGTTT 59.639 34.615 0.00 0.00 0.00 2.66
246 247 5.854338 CGCATTGAACCGTTATTTTACAGTT 59.146 36.000 0.00 0.00 0.00 3.16
247 248 5.179742 TCGCATTGAACCGTTATTTTACAGT 59.820 36.000 0.00 0.00 0.00 3.55
248 249 5.506832 GTCGCATTGAACCGTTATTTTACAG 59.493 40.000 0.00 0.00 0.00 2.74
249 250 5.179742 AGTCGCATTGAACCGTTATTTTACA 59.820 36.000 0.00 0.00 0.00 2.41
250 251 5.624292 AGTCGCATTGAACCGTTATTTTAC 58.376 37.500 0.00 0.00 0.00 2.01
251 252 5.866335 AGTCGCATTGAACCGTTATTTTA 57.134 34.783 0.00 0.00 0.00 1.52
252 253 4.759516 AGTCGCATTGAACCGTTATTTT 57.240 36.364 0.00 0.00 0.00 1.82
253 254 4.759516 AAGTCGCATTGAACCGTTATTT 57.240 36.364 0.00 0.00 0.00 1.40
254 255 5.866335 TTAAGTCGCATTGAACCGTTATT 57.134 34.783 0.00 0.00 0.00 1.40
255 256 5.866335 TTTAAGTCGCATTGAACCGTTAT 57.134 34.783 0.00 0.00 0.00 1.89
256 257 5.640357 AGATTTAAGTCGCATTGAACCGTTA 59.360 36.000 0.00 0.00 0.00 3.18
257 258 4.454504 AGATTTAAGTCGCATTGAACCGTT 59.545 37.500 0.00 0.00 0.00 4.44
258 259 4.000988 AGATTTAAGTCGCATTGAACCGT 58.999 39.130 0.00 0.00 0.00 4.83
259 260 4.334443 CAGATTTAAGTCGCATTGAACCG 58.666 43.478 0.00 0.00 0.00 4.44
260 261 4.394920 TCCAGATTTAAGTCGCATTGAACC 59.605 41.667 0.00 0.00 0.00 3.62
261 262 5.122396 AGTCCAGATTTAAGTCGCATTGAAC 59.878 40.000 0.00 0.00 0.00 3.18
262 263 5.122239 CAGTCCAGATTTAAGTCGCATTGAA 59.878 40.000 0.00 0.00 0.00 2.69
263 264 4.631377 CAGTCCAGATTTAAGTCGCATTGA 59.369 41.667 0.00 0.00 0.00 2.57
264 265 4.728882 GCAGTCCAGATTTAAGTCGCATTG 60.729 45.833 0.00 0.00 0.00 2.82
265 266 3.375299 GCAGTCCAGATTTAAGTCGCATT 59.625 43.478 0.00 0.00 0.00 3.56
266 267 2.939103 GCAGTCCAGATTTAAGTCGCAT 59.061 45.455 0.00 0.00 0.00 4.73
267 268 2.346803 GCAGTCCAGATTTAAGTCGCA 58.653 47.619 0.00 0.00 0.00 5.10
268 269 1.324736 CGCAGTCCAGATTTAAGTCGC 59.675 52.381 0.00 0.00 0.00 5.19
269 270 1.927174 CCGCAGTCCAGATTTAAGTCG 59.073 52.381 0.00 0.00 0.00 4.18
270 271 2.280628 CCCGCAGTCCAGATTTAAGTC 58.719 52.381 0.00 0.00 0.00 3.01
271 272 1.628846 ACCCGCAGTCCAGATTTAAGT 59.371 47.619 0.00 0.00 0.00 2.24
272 273 2.403252 ACCCGCAGTCCAGATTTAAG 57.597 50.000 0.00 0.00 0.00 1.85
273 274 2.039216 TCAACCCGCAGTCCAGATTTAA 59.961 45.455 0.00 0.00 0.00 1.52
274 275 1.626321 TCAACCCGCAGTCCAGATTTA 59.374 47.619 0.00 0.00 0.00 1.40
275 276 0.400213 TCAACCCGCAGTCCAGATTT 59.600 50.000 0.00 0.00 0.00 2.17
276 277 0.620556 ATCAACCCGCAGTCCAGATT 59.379 50.000 0.00 0.00 0.00 2.40
277 278 0.620556 AATCAACCCGCAGTCCAGAT 59.379 50.000 0.00 0.00 0.00 2.90
278 279 0.400213 AAATCAACCCGCAGTCCAGA 59.600 50.000 0.00 0.00 0.00 3.86
279 280 0.804989 GAAATCAACCCGCAGTCCAG 59.195 55.000 0.00 0.00 0.00 3.86
280 281 0.109532 TGAAATCAACCCGCAGTCCA 59.890 50.000 0.00 0.00 0.00 4.02
281 282 1.133025 CATGAAATCAACCCGCAGTCC 59.867 52.381 0.00 0.00 0.00 3.85
282 283 2.083774 TCATGAAATCAACCCGCAGTC 58.916 47.619 0.00 0.00 0.00 3.51
283 284 2.198827 TCATGAAATCAACCCGCAGT 57.801 45.000 0.00 0.00 0.00 4.40
284 285 3.574284 TTTCATGAAATCAACCCGCAG 57.426 42.857 16.91 0.00 0.00 5.18
285 286 3.648009 GTTTTCATGAAATCAACCCGCA 58.352 40.909 21.10 0.61 0.00 5.69
286 287 2.661195 CGTTTTCATGAAATCAACCCGC 59.339 45.455 21.10 4.65 0.00 6.13
287 288 2.661195 GCGTTTTCATGAAATCAACCCG 59.339 45.455 21.10 15.75 0.00 5.28
288 289 3.648009 TGCGTTTTCATGAAATCAACCC 58.352 40.909 21.10 9.86 0.00 4.11
289 290 3.674753 CCTGCGTTTTCATGAAATCAACC 59.325 43.478 21.10 11.58 0.00 3.77
290 291 3.674753 CCCTGCGTTTTCATGAAATCAAC 59.325 43.478 21.10 15.05 0.00 3.18
291 292 3.305950 CCCCTGCGTTTTCATGAAATCAA 60.306 43.478 21.10 10.57 0.00 2.57
292 293 2.230992 CCCCTGCGTTTTCATGAAATCA 59.769 45.455 21.10 16.74 0.00 2.57
293 294 2.879826 CCCCTGCGTTTTCATGAAATC 58.120 47.619 21.10 18.35 0.00 2.17
294 295 1.066929 GCCCCTGCGTTTTCATGAAAT 60.067 47.619 21.10 0.00 0.00 2.17
295 296 0.316841 GCCCCTGCGTTTTCATGAAA 59.683 50.000 16.91 16.91 0.00 2.69
296 297 0.539438 AGCCCCTGCGTTTTCATGAA 60.539 50.000 3.38 3.38 44.33 2.57
297 298 0.539438 AAGCCCCTGCGTTTTCATGA 60.539 50.000 0.00 0.00 44.33 3.07
298 299 0.318120 AAAGCCCCTGCGTTTTCATG 59.682 50.000 0.00 0.00 44.33 3.07
299 300 1.047801 AAAAGCCCCTGCGTTTTCAT 58.952 45.000 0.00 0.00 45.03 2.57
300 301 2.510664 AAAAGCCCCTGCGTTTTCA 58.489 47.368 0.00 0.00 45.03 2.69
316 317 1.590238 CGTCGCACCATTTTGCAAAAA 59.410 42.857 27.10 11.93 43.15 1.94
317 318 1.203928 CGTCGCACCATTTTGCAAAA 58.796 45.000 25.76 25.76 43.15 2.44
318 319 0.596083 CCGTCGCACCATTTTGCAAA 60.596 50.000 8.05 8.05 43.15 3.68
319 320 1.007964 CCGTCGCACCATTTTGCAA 60.008 52.632 0.00 0.00 43.15 4.08
320 321 1.240641 ATCCGTCGCACCATTTTGCA 61.241 50.000 0.00 0.00 43.15 4.08
321 322 0.798009 CATCCGTCGCACCATTTTGC 60.798 55.000 0.00 0.00 39.28 3.68
322 323 0.179166 CCATCCGTCGCACCATTTTG 60.179 55.000 0.00 0.00 0.00 2.44
323 324 1.933115 GCCATCCGTCGCACCATTTT 61.933 55.000 0.00 0.00 0.00 1.82
324 325 2.406616 GCCATCCGTCGCACCATTT 61.407 57.895 0.00 0.00 0.00 2.32
325 326 2.824041 GCCATCCGTCGCACCATT 60.824 61.111 0.00 0.00 0.00 3.16
326 327 4.094646 TGCCATCCGTCGCACCAT 62.095 61.111 0.00 0.00 0.00 3.55
327 328 4.758251 CTGCCATCCGTCGCACCA 62.758 66.667 0.00 0.00 0.00 4.17
328 329 3.950794 TTCTGCCATCCGTCGCACC 62.951 63.158 0.00 0.00 0.00 5.01
329 330 2.032634 TTTCTGCCATCCGTCGCAC 61.033 57.895 0.00 0.00 0.00 5.34
330 331 2.032634 GTTTCTGCCATCCGTCGCA 61.033 57.895 0.00 0.00 0.00 5.10
331 332 2.750888 GGTTTCTGCCATCCGTCGC 61.751 63.158 0.00 0.00 0.00 5.19
332 333 2.106683 GGGTTTCTGCCATCCGTCG 61.107 63.158 0.00 0.00 0.00 5.12
333 334 0.539986 TAGGGTTTCTGCCATCCGTC 59.460 55.000 0.00 0.00 0.00 4.79
334 335 0.252197 GTAGGGTTTCTGCCATCCGT 59.748 55.000 0.00 0.00 0.00 4.69
335 336 0.810031 CGTAGGGTTTCTGCCATCCG 60.810 60.000 0.00 0.00 0.00 4.18
336 337 0.252197 ACGTAGGGTTTCTGCCATCC 59.748 55.000 0.00 0.00 0.00 3.51
337 338 1.369625 CACGTAGGGTTTCTGCCATC 58.630 55.000 0.00 0.00 0.00 3.51
338 339 0.676782 GCACGTAGGGTTTCTGCCAT 60.677 55.000 0.00 0.00 0.00 4.40
339 340 1.302192 GCACGTAGGGTTTCTGCCA 60.302 57.895 0.00 0.00 0.00 4.92
340 341 0.605589 AAGCACGTAGGGTTTCTGCC 60.606 55.000 0.00 0.00 0.00 4.85
341 342 1.235724 AAAGCACGTAGGGTTTCTGC 58.764 50.000 0.00 0.00 33.54 4.26
342 343 6.920569 ATAATAAAGCACGTAGGGTTTCTG 57.079 37.500 6.36 0.00 39.10 3.02
343 344 7.713942 CCTAATAATAAAGCACGTAGGGTTTCT 59.286 37.037 6.36 0.00 39.10 2.52
344 345 7.496920 ACCTAATAATAAAGCACGTAGGGTTTC 59.503 37.037 6.36 0.00 39.10 2.78
345 346 7.341030 ACCTAATAATAAAGCACGTAGGGTTT 58.659 34.615 7.98 7.98 41.05 3.27
346 347 6.892485 ACCTAATAATAAAGCACGTAGGGTT 58.108 36.000 0.00 0.00 32.56 4.11
347 348 6.490241 ACCTAATAATAAAGCACGTAGGGT 57.510 37.500 0.00 0.00 32.56 4.34
348 349 7.889469 TCTACCTAATAATAAAGCACGTAGGG 58.111 38.462 0.00 0.00 32.56 3.53
349 350 8.790718 TCTCTACCTAATAATAAAGCACGTAGG 58.209 37.037 0.00 0.00 34.14 3.18
390 391 9.809096 TGCAACTCACATTTTACTTTTCAAATA 57.191 25.926 0.00 0.00 0.00 1.40
391 392 8.715191 TGCAACTCACATTTTACTTTTCAAAT 57.285 26.923 0.00 0.00 0.00 2.32
392 393 8.602328 CATGCAACTCACATTTTACTTTTCAAA 58.398 29.630 0.00 0.00 0.00 2.69
393 394 7.763528 ACATGCAACTCACATTTTACTTTTCAA 59.236 29.630 0.00 0.00 0.00 2.69
394 395 7.264221 ACATGCAACTCACATTTTACTTTTCA 58.736 30.769 0.00 0.00 0.00 2.69
395 396 7.434897 TGACATGCAACTCACATTTTACTTTTC 59.565 33.333 0.00 0.00 0.00 2.29
396 397 7.264221 TGACATGCAACTCACATTTTACTTTT 58.736 30.769 0.00 0.00 0.00 2.27
397 398 6.804677 TGACATGCAACTCACATTTTACTTT 58.195 32.000 0.00 0.00 0.00 2.66
398 399 6.389830 TGACATGCAACTCACATTTTACTT 57.610 33.333 0.00 0.00 0.00 2.24
399 400 6.579666 ATGACATGCAACTCACATTTTACT 57.420 33.333 0.00 0.00 0.00 2.24
400 401 8.236586 TCTTATGACATGCAACTCACATTTTAC 58.763 33.333 0.00 0.00 0.00 2.01
401 402 8.334263 TCTTATGACATGCAACTCACATTTTA 57.666 30.769 0.00 0.00 0.00 1.52
402 403 7.218228 TCTTATGACATGCAACTCACATTTT 57.782 32.000 0.00 0.00 0.00 1.82
403 404 6.822667 TCTTATGACATGCAACTCACATTT 57.177 33.333 0.00 0.00 0.00 2.32
404 405 6.822667 TTCTTATGACATGCAACTCACATT 57.177 33.333 0.00 0.00 0.00 2.71
405 406 7.094075 ACAATTCTTATGACATGCAACTCACAT 60.094 33.333 0.00 0.00 0.00 3.21
406 407 6.207221 ACAATTCTTATGACATGCAACTCACA 59.793 34.615 0.00 0.00 0.00 3.58
407 408 6.615088 ACAATTCTTATGACATGCAACTCAC 58.385 36.000 0.00 0.00 0.00 3.51
408 409 6.822667 ACAATTCTTATGACATGCAACTCA 57.177 33.333 0.00 0.00 0.00 3.41
409 410 7.859377 CCATACAATTCTTATGACATGCAACTC 59.141 37.037 0.00 0.00 0.00 3.01
410 411 7.682741 GCCATACAATTCTTATGACATGCAACT 60.683 37.037 0.00 0.00 0.00 3.16
411 412 6.418819 GCCATACAATTCTTATGACATGCAAC 59.581 38.462 0.00 0.00 0.00 4.17
412 413 6.461370 GGCCATACAATTCTTATGACATGCAA 60.461 38.462 0.00 0.00 0.00 4.08
413 414 5.009911 GGCCATACAATTCTTATGACATGCA 59.990 40.000 0.00 0.00 0.00 3.96
414 415 5.464168 GGCCATACAATTCTTATGACATGC 58.536 41.667 0.00 1.66 0.00 4.06
415 416 5.335113 CCGGCCATACAATTCTTATGACATG 60.335 44.000 2.24 0.00 0.00 3.21
416 417 4.761739 CCGGCCATACAATTCTTATGACAT 59.238 41.667 2.24 0.00 0.00 3.06
417 418 4.133820 CCGGCCATACAATTCTTATGACA 58.866 43.478 2.24 0.00 0.00 3.58
418 419 4.385825 TCCGGCCATACAATTCTTATGAC 58.614 43.478 2.24 0.00 0.00 3.06
419 420 4.698201 TCCGGCCATACAATTCTTATGA 57.302 40.909 2.24 0.00 0.00 2.15
420 421 4.396166 GGATCCGGCCATACAATTCTTATG 59.604 45.833 2.24 0.00 0.00 1.90
421 422 4.042809 TGGATCCGGCCATACAATTCTTAT 59.957 41.667 7.39 0.00 31.66 1.73
422 423 3.392947 TGGATCCGGCCATACAATTCTTA 59.607 43.478 7.39 0.00 31.66 2.10
423 424 2.174639 TGGATCCGGCCATACAATTCTT 59.825 45.455 7.39 0.00 31.66 2.52
424 425 1.774254 TGGATCCGGCCATACAATTCT 59.226 47.619 7.39 0.00 31.66 2.40
425 426 2.270352 TGGATCCGGCCATACAATTC 57.730 50.000 7.39 0.00 31.66 2.17
426 427 2.978156 ATGGATCCGGCCATACAATT 57.022 45.000 11.55 0.00 46.56 2.32
433 434 3.304911 TTGAAAATATGGATCCGGCCA 57.695 42.857 7.39 3.02 43.23 5.36
434 435 4.871933 AATTGAAAATATGGATCCGGCC 57.128 40.909 7.39 0.00 0.00 6.13
461 462 9.602568 TGCCGTAAAAATAGTAACTATCATTGA 57.397 29.630 0.00 0.00 0.00 2.57
469 470 9.609346 AAGTCATATGCCGTAAAAATAGTAACT 57.391 29.630 0.00 0.00 0.00 2.24
478 479 9.672086 GCAAAATATAAGTCATATGCCGTAAAA 57.328 29.630 0.00 0.00 29.85 1.52
479 480 9.062524 AGCAAAATATAAGTCATATGCCGTAAA 57.937 29.630 0.00 0.00 29.85 2.01
480 481 8.615878 AGCAAAATATAAGTCATATGCCGTAA 57.384 30.769 0.00 0.00 29.85 3.18
481 482 9.366216 CTAGCAAAATATAAGTCATATGCCGTA 57.634 33.333 0.00 0.00 29.85 4.02
482 483 7.878127 ACTAGCAAAATATAAGTCATATGCCGT 59.122 33.333 0.00 0.00 29.85 5.68
483 484 8.256611 ACTAGCAAAATATAAGTCATATGCCG 57.743 34.615 0.00 0.00 29.85 5.69
498 499 8.995220 TGACTGTACGAATTTAACTAGCAAAAT 58.005 29.630 0.00 0.00 0.00 1.82
499 500 8.367943 TGACTGTACGAATTTAACTAGCAAAA 57.632 30.769 0.00 0.00 0.00 2.44
500 501 7.949903 TGACTGTACGAATTTAACTAGCAAA 57.050 32.000 0.00 0.00 0.00 3.68
501 502 7.949903 TTGACTGTACGAATTTAACTAGCAA 57.050 32.000 0.00 0.00 0.00 3.91
502 503 7.949903 TTTGACTGTACGAATTTAACTAGCA 57.050 32.000 0.00 0.00 0.00 3.49
503 504 9.262472 CATTTTGACTGTACGAATTTAACTAGC 57.738 33.333 0.00 0.00 0.00 3.42
506 507 8.073768 CCACATTTTGACTGTACGAATTTAACT 58.926 33.333 0.00 0.00 0.00 2.24
507 508 7.149031 GCCACATTTTGACTGTACGAATTTAAC 60.149 37.037 0.00 0.00 0.00 2.01
508 509 6.858993 GCCACATTTTGACTGTACGAATTTAA 59.141 34.615 0.00 0.00 0.00 1.52
509 510 6.017026 TGCCACATTTTGACTGTACGAATTTA 60.017 34.615 0.00 0.00 0.00 1.40
510 511 5.219633 GCCACATTTTGACTGTACGAATTT 58.780 37.500 0.00 0.00 0.00 1.82
511 512 4.277174 TGCCACATTTTGACTGTACGAATT 59.723 37.500 0.00 0.00 0.00 2.17
512 513 3.818210 TGCCACATTTTGACTGTACGAAT 59.182 39.130 0.00 0.00 0.00 3.34
513 514 3.206964 TGCCACATTTTGACTGTACGAA 58.793 40.909 0.00 0.00 0.00 3.85
514 515 2.839975 TGCCACATTTTGACTGTACGA 58.160 42.857 0.00 0.00 0.00 3.43
515 516 3.829886 ATGCCACATTTTGACTGTACG 57.170 42.857 0.00 0.00 0.00 3.67
516 517 9.072294 GTATTTTATGCCACATTTTGACTGTAC 57.928 33.333 0.00 0.00 0.00 2.90
517 518 7.965655 CGTATTTTATGCCACATTTTGACTGTA 59.034 33.333 0.00 0.00 0.00 2.74
518 519 6.806249 CGTATTTTATGCCACATTTTGACTGT 59.194 34.615 0.00 0.00 0.00 3.55
519 520 7.026562 TCGTATTTTATGCCACATTTTGACTG 58.973 34.615 0.00 0.00 0.00 3.51
520 521 7.151999 TCGTATTTTATGCCACATTTTGACT 57.848 32.000 0.00 0.00 0.00 3.41
521 522 6.472163 CCTCGTATTTTATGCCACATTTTGAC 59.528 38.462 0.00 0.00 0.00 3.18
522 523 6.405286 CCCTCGTATTTTATGCCACATTTTGA 60.405 38.462 0.00 0.00 0.00 2.69
523 524 5.748152 CCCTCGTATTTTATGCCACATTTTG 59.252 40.000 0.00 0.00 0.00 2.44
524 525 5.163457 CCCCTCGTATTTTATGCCACATTTT 60.163 40.000 0.00 0.00 0.00 1.82
525 526 4.340950 CCCCTCGTATTTTATGCCACATTT 59.659 41.667 0.00 0.00 0.00 2.32
526 527 3.888930 CCCCTCGTATTTTATGCCACATT 59.111 43.478 0.00 0.00 0.00 2.71
527 528 3.137544 TCCCCTCGTATTTTATGCCACAT 59.862 43.478 0.00 0.00 0.00 3.21
528 529 2.506231 TCCCCTCGTATTTTATGCCACA 59.494 45.455 0.00 0.00 0.00 4.17
529 530 2.876550 GTCCCCTCGTATTTTATGCCAC 59.123 50.000 0.00 0.00 0.00 5.01
530 531 2.775384 AGTCCCCTCGTATTTTATGCCA 59.225 45.455 0.00 0.00 0.00 4.92
531 532 3.487120 AGTCCCCTCGTATTTTATGCC 57.513 47.619 0.00 0.00 0.00 4.40
532 533 8.611654 TTTATTAGTCCCCTCGTATTTTATGC 57.388 34.615 0.00 0.00 0.00 3.14
534 535 9.955102 GGATTTATTAGTCCCCTCGTATTTTAT 57.045 33.333 0.00 0.00 0.00 1.40
535 536 9.162733 AGGATTTATTAGTCCCCTCGTATTTTA 57.837 33.333 0.00 0.00 35.00 1.52
536 537 7.937394 CAGGATTTATTAGTCCCCTCGTATTTT 59.063 37.037 0.00 0.00 35.00 1.82
537 538 7.291651 TCAGGATTTATTAGTCCCCTCGTATTT 59.708 37.037 0.00 0.00 35.00 1.40
538 539 6.785963 TCAGGATTTATTAGTCCCCTCGTATT 59.214 38.462 0.00 0.00 35.00 1.89
539 540 6.320518 TCAGGATTTATTAGTCCCCTCGTAT 58.679 40.000 0.00 0.00 35.00 3.06
540 541 5.708544 TCAGGATTTATTAGTCCCCTCGTA 58.291 41.667 0.00 0.00 35.00 3.43
541 542 4.553678 TCAGGATTTATTAGTCCCCTCGT 58.446 43.478 0.00 0.00 35.00 4.18
542 543 5.246203 TCATCAGGATTTATTAGTCCCCTCG 59.754 44.000 0.00 0.00 35.00 4.63
543 544 6.688073 TCATCAGGATTTATTAGTCCCCTC 57.312 41.667 0.00 0.00 35.00 4.30
544 545 6.466470 GCTTCATCAGGATTTATTAGTCCCCT 60.466 42.308 0.00 0.00 35.00 4.79
545 546 5.707764 GCTTCATCAGGATTTATTAGTCCCC 59.292 44.000 0.00 0.00 35.00 4.81
546 547 5.409826 CGCTTCATCAGGATTTATTAGTCCC 59.590 44.000 0.00 0.00 35.00 4.46
547 548 6.223852 TCGCTTCATCAGGATTTATTAGTCC 58.776 40.000 0.00 0.00 34.64 3.85
548 549 7.897575 ATCGCTTCATCAGGATTTATTAGTC 57.102 36.000 0.00 0.00 0.00 2.59
549 550 9.209175 GTAATCGCTTCATCAGGATTTATTAGT 57.791 33.333 0.00 0.00 31.95 2.24
550 551 9.429359 AGTAATCGCTTCATCAGGATTTATTAG 57.571 33.333 0.00 0.00 31.95 1.73
552 553 9.429359 CTAGTAATCGCTTCATCAGGATTTATT 57.571 33.333 0.00 0.00 31.95 1.40
553 554 8.589338 ACTAGTAATCGCTTCATCAGGATTTAT 58.411 33.333 0.00 0.00 31.95 1.40
554 555 7.952671 ACTAGTAATCGCTTCATCAGGATTTA 58.047 34.615 0.00 0.00 31.95 1.40
555 556 6.821388 ACTAGTAATCGCTTCATCAGGATTT 58.179 36.000 0.00 0.00 31.95 2.17
556 557 6.412362 ACTAGTAATCGCTTCATCAGGATT 57.588 37.500 0.00 0.00 33.91 3.01
557 558 6.717540 ACTACTAGTAATCGCTTCATCAGGAT 59.282 38.462 3.76 0.00 0.00 3.24
558 559 6.062749 ACTACTAGTAATCGCTTCATCAGGA 58.937 40.000 3.76 0.00 0.00 3.86
559 560 6.320494 ACTACTAGTAATCGCTTCATCAGG 57.680 41.667 3.76 0.00 0.00 3.86
560 561 8.635877 AAAACTACTAGTAATCGCTTCATCAG 57.364 34.615 3.76 0.00 0.00 2.90
561 562 8.467598 AGAAAACTACTAGTAATCGCTTCATCA 58.532 33.333 3.76 0.00 0.00 3.07
562 563 8.859517 AGAAAACTACTAGTAATCGCTTCATC 57.140 34.615 3.76 0.00 0.00 2.92
589 590 8.470002 GGTCTCCACTGCATTTATTTAAGAAAT 58.530 33.333 0.00 0.00 34.90 2.17
590 591 7.669722 AGGTCTCCACTGCATTTATTTAAGAAA 59.330 33.333 0.00 0.00 0.00 2.52
591 592 7.175104 AGGTCTCCACTGCATTTATTTAAGAA 58.825 34.615 0.00 0.00 0.00 2.52
592 593 6.721318 AGGTCTCCACTGCATTTATTTAAGA 58.279 36.000 0.00 0.00 0.00 2.10
593 594 8.506168 TTAGGTCTCCACTGCATTTATTTAAG 57.494 34.615 0.00 0.00 0.00 1.85
594 595 9.120538 GATTAGGTCTCCACTGCATTTATTTAA 57.879 33.333 0.00 0.00 0.00 1.52
595 596 8.494433 AGATTAGGTCTCCACTGCATTTATTTA 58.506 33.333 0.00 0.00 28.45 1.40
596 597 7.349598 AGATTAGGTCTCCACTGCATTTATTT 58.650 34.615 0.00 0.00 28.45 1.40
597 598 6.904626 AGATTAGGTCTCCACTGCATTTATT 58.095 36.000 0.00 0.00 28.45 1.40
598 599 6.506538 AGATTAGGTCTCCACTGCATTTAT 57.493 37.500 0.00 0.00 28.45 1.40
606 607 2.424523 CCCCGTAGATTAGGTCTCCACT 60.425 54.545 0.00 0.00 38.42 4.00
607 608 1.962100 CCCCGTAGATTAGGTCTCCAC 59.038 57.143 0.00 0.00 38.42 4.02
610 611 5.047448 GGAATTACCCCGTAGATTAGGTCTC 60.047 48.000 0.00 0.00 38.42 3.36
612 613 5.144692 GGAATTACCCCGTAGATTAGGTC 57.855 47.826 0.00 0.00 33.70 3.85
662 663 2.937149 CTCAGCTCACATGGATTCAGTG 59.063 50.000 0.00 0.00 34.67 3.66
713 714 2.575532 TCTGTTGCTTTTGACTGGGAG 58.424 47.619 0.00 0.00 0.00 4.30
742 743 3.006430 TGTTTTACATGACAGCGAGAGGA 59.994 43.478 0.00 0.00 0.00 3.71
770 771 3.185330 CGATGGATGCTCCGATTGATAG 58.815 50.000 0.00 0.00 40.17 2.08
799 825 5.784578 TTTCTTTTACCTTGCTTTCCTCC 57.215 39.130 0.00 0.00 0.00 4.30
937 1044 2.439104 GGGACTGCTAGAGCTGGGG 61.439 68.421 12.34 0.00 43.15 4.96
1062 1169 2.436824 GAGAGGCAAGCGGGGAAC 60.437 66.667 0.00 0.00 0.00 3.62
1070 1177 3.708220 GACGCGAGGGAGAGGCAAG 62.708 68.421 15.93 0.00 0.00 4.01
1098 1205 2.362503 AGCCGATCTCCACGACCA 60.363 61.111 0.00 0.00 0.00 4.02
1104 1211 1.699054 CCCAATCCAGCCGATCTCCA 61.699 60.000 0.00 0.00 0.00 3.86
1128 1235 4.821589 GCACCGGCGAGGAGAAGG 62.822 72.222 9.30 0.00 45.00 3.46
1129 1236 4.821589 GGCACCGGCGAGGAGAAG 62.822 72.222 9.30 0.00 45.00 2.85
1146 1253 4.796495 GGCGCTACAACCAGGGGG 62.796 72.222 7.64 0.00 41.29 5.40
1227 1334 3.745975 TCAGCAATTAACGACACCTTCTG 59.254 43.478 0.00 0.00 0.00 3.02
1241 1348 4.165779 CCGCGAAACTAAATTCAGCAATT 58.834 39.130 8.23 0.00 33.27 2.32
1271 1379 4.028131 GGATTTAAAACCCTAACCCCTGG 58.972 47.826 3.13 0.00 0.00 4.45
1272 1380 4.679331 TGGATTTAAAACCCTAACCCCTG 58.321 43.478 11.61 0.00 0.00 4.45
1313 1423 4.556942 ATTGTCGTGGTCATGCAATATG 57.443 40.909 0.00 0.00 0.00 1.78
1318 1428 2.935849 GACATATTGTCGTGGTCATGCA 59.064 45.455 0.00 0.00 37.67 3.96
1349 1459 6.318900 GGCTAGAAACCAAGCATTATAACACT 59.681 38.462 0.00 0.00 40.61 3.55
1356 1475 3.267483 GACGGCTAGAAACCAAGCATTA 58.733 45.455 0.00 0.00 40.61 1.90
1377 1496 2.224066 CCCTAGCTTCATCGTAGGTTGG 60.224 54.545 0.00 0.00 36.30 3.77
1380 1499 1.041437 GCCCTAGCTTCATCGTAGGT 58.959 55.000 0.00 0.00 32.73 3.08
1381 1500 3.896317 GCCCTAGCTTCATCGTAGG 57.104 57.895 0.00 0.00 35.50 3.18
1392 1511 1.340114 ACACCAAAGCTTAGCCCTAGC 60.340 52.381 0.00 0.00 40.32 3.42
1407 1537 5.472137 GCTCCTGTATAAAAACAAGACACCA 59.528 40.000 0.00 0.00 0.00 4.17
1422 1552 9.118300 CTTGAAATCAATCTTAAGCTCCTGTAT 57.882 33.333 0.00 0.00 35.02 2.29
1424 1554 6.127786 GCTTGAAATCAATCTTAAGCTCCTGT 60.128 38.462 0.00 0.00 37.95 4.00
1439 1569 1.337354 TGGTCGTAGCGCTTGAAATCA 60.337 47.619 18.68 10.64 0.00 2.57
1484 1614 8.624776 CAGAAGAAGAAGAAAATACAAACCTGT 58.375 33.333 0.00 0.00 39.75 4.00
1494 1624 5.184671 GGCCATGACAGAAGAAGAAGAAAAT 59.815 40.000 0.00 0.00 0.00 1.82
1495 1625 4.520492 GGCCATGACAGAAGAAGAAGAAAA 59.480 41.667 0.00 0.00 0.00 2.29
1496 1626 4.074970 GGCCATGACAGAAGAAGAAGAAA 58.925 43.478 0.00 0.00 0.00 2.52
1497 1627 3.328931 AGGCCATGACAGAAGAAGAAGAA 59.671 43.478 5.01 0.00 0.00 2.52
1498 1628 2.909006 AGGCCATGACAGAAGAAGAAGA 59.091 45.455 5.01 0.00 0.00 2.87
1499 1629 3.269178 GAGGCCATGACAGAAGAAGAAG 58.731 50.000 5.01 0.00 0.00 2.85
1500 1630 2.026822 GGAGGCCATGACAGAAGAAGAA 60.027 50.000 5.01 0.00 0.00 2.52
1502 1632 1.558756 AGGAGGCCATGACAGAAGAAG 59.441 52.381 5.01 0.00 0.00 2.85
1503 1633 1.661463 AGGAGGCCATGACAGAAGAA 58.339 50.000 5.01 0.00 0.00 2.52
1504 1634 2.550277 TAGGAGGCCATGACAGAAGA 57.450 50.000 5.01 0.00 0.00 2.87
1505 1635 3.135348 TCAATAGGAGGCCATGACAGAAG 59.865 47.826 5.01 0.00 0.00 2.85
1511 1651 6.025539 ACACTATATCAATAGGAGGCCATGA 58.974 40.000 5.01 0.00 39.63 3.07
1512 1652 6.070596 TCACACTATATCAATAGGAGGCCATG 60.071 42.308 5.01 0.00 39.63 3.66
1523 1663 9.836864 TTCAGTTAGCAATCACACTATATCAAT 57.163 29.630 0.00 0.00 0.00 2.57
1525 1665 8.478066 AGTTCAGTTAGCAATCACACTATATCA 58.522 33.333 0.00 0.00 0.00 2.15
1532 1677 6.494842 TCAAAAGTTCAGTTAGCAATCACAC 58.505 36.000 0.00 0.00 0.00 3.82
1553 1698 4.158209 CACATGTTTGGCCTGTCATATCAA 59.842 41.667 3.32 0.00 0.00 2.57
1556 1701 3.025978 CCACATGTTTGGCCTGTCATAT 58.974 45.455 3.32 0.00 0.00 1.78
1581 1726 1.754226 TGGTCAAAGCACCTCCAAAAC 59.246 47.619 0.00 0.00 37.34 2.43
1585 1730 0.843309 TCTTGGTCAAAGCACCTCCA 59.157 50.000 0.00 0.00 37.34 3.86
1591 1736 2.867624 AGCAGATTCTTGGTCAAAGCA 58.132 42.857 0.00 0.00 35.69 3.91
1609 1754 2.668457 CGACACACATACCTTCAGAAGC 59.332 50.000 4.41 0.00 0.00 3.86
1624 1769 1.803334 GTCCATTAGTTGCCGACACA 58.197 50.000 0.00 0.00 0.00 3.72
1625 1770 0.719465 CGTCCATTAGTTGCCGACAC 59.281 55.000 0.00 0.00 0.00 3.67
1629 1774 2.469516 GCCCGTCCATTAGTTGCCG 61.470 63.158 0.00 0.00 0.00 5.69
1641 1786 2.745102 GCTCTCTACAATTAGCCCGTC 58.255 52.381 0.00 0.00 0.00 4.79
1646 1791 6.102897 TCTATTGGGCTCTCTACAATTAGC 57.897 41.667 0.00 0.00 36.36 3.09
1647 1792 7.601886 CACATCTATTGGGCTCTCTACAATTAG 59.398 40.741 0.00 0.00 36.36 1.73
1653 1798 4.946478 ACACATCTATTGGGCTCTCTAC 57.054 45.455 0.00 0.00 28.72 2.59
1676 1821 9.463443 CACAACTCATATCAATACACGAATAGA 57.537 33.333 0.00 0.00 0.00 1.98
1677 1822 8.703336 CCACAACTCATATCAATACACGAATAG 58.297 37.037 0.00 0.00 0.00 1.73
1679 1824 6.483307 CCCACAACTCATATCAATACACGAAT 59.517 38.462 0.00 0.00 0.00 3.34
1680 1825 5.815222 CCCACAACTCATATCAATACACGAA 59.185 40.000 0.00 0.00 0.00 3.85
1681 1826 5.105106 ACCCACAACTCATATCAATACACGA 60.105 40.000 0.00 0.00 0.00 4.35
1682 1827 5.116180 ACCCACAACTCATATCAATACACG 58.884 41.667 0.00 0.00 0.00 4.49
1683 1828 7.120579 TGAAACCCACAACTCATATCAATACAC 59.879 37.037 0.00 0.00 0.00 2.90
1725 1870 4.442073 GCAAGTGCAGAAACAATGTACAAG 59.558 41.667 0.00 0.00 41.59 3.16
1804 1949 1.474077 CCTGATGCCCAAGTAAGCAAC 59.526 52.381 0.00 0.00 43.36 4.17
1806 1951 0.680921 GCCTGATGCCCAAGTAAGCA 60.681 55.000 0.00 0.00 44.45 3.91
1875 2020 0.389025 GCACACCACCTTTTCCCAAG 59.611 55.000 0.00 0.00 0.00 3.61
1942 2087 3.694072 GGTGCCTACAACAGCATCATAAA 59.306 43.478 0.00 0.00 41.86 1.40
1956 2101 2.808543 CAAGAAGAACAGTGGTGCCTAC 59.191 50.000 0.00 0.00 0.00 3.18
2091 2236 5.920273 ACGATGGCAGTTTAAACAATGAAAG 59.080 36.000 20.06 8.91 0.00 2.62
2106 2251 2.483877 ACACATGTTGTAACGATGGCAG 59.516 45.455 0.00 0.00 36.32 4.85
2291 2519 4.081309 ACAAGTAGGGTGCATTGTATACGT 60.081 41.667 0.00 0.00 34.26 3.57
2292 2520 4.439057 ACAAGTAGGGTGCATTGTATACG 58.561 43.478 0.00 0.00 34.26 3.06
2293 2521 5.065988 CCAACAAGTAGGGTGCATTGTATAC 59.934 44.000 1.77 0.00 34.92 1.47
2294 2522 5.189928 CCAACAAGTAGGGTGCATTGTATA 58.810 41.667 1.77 0.00 34.92 1.47
2295 2523 4.016444 CCAACAAGTAGGGTGCATTGTAT 58.984 43.478 1.77 0.00 34.92 2.29
2296 2524 3.181438 ACCAACAAGTAGGGTGCATTGTA 60.181 43.478 1.77 0.00 34.92 2.41
2297 2525 2.238521 CCAACAAGTAGGGTGCATTGT 58.761 47.619 0.00 0.00 37.47 2.71
2298 2526 2.238521 ACCAACAAGTAGGGTGCATTG 58.761 47.619 0.00 0.00 32.60 2.82
2299 2527 2.675658 ACCAACAAGTAGGGTGCATT 57.324 45.000 0.00 0.00 32.60 3.56
2300 2528 2.675658 AACCAACAAGTAGGGTGCAT 57.324 45.000 0.00 0.00 34.51 3.96
2301 2529 2.812613 GCTAACCAACAAGTAGGGTGCA 60.813 50.000 0.00 0.00 34.51 4.57
2434 2684 1.604604 TGGTACAGTCAAAGCAAGCC 58.395 50.000 0.00 0.00 0.00 4.35
2519 2769 0.980231 GGACAGCTCTCACCATCCCT 60.980 60.000 0.00 0.00 0.00 4.20
2525 2775 1.280421 AGGAATTGGACAGCTCTCACC 59.720 52.381 0.00 0.00 0.00 4.02
2545 2795 4.993028 ACCATTTACTGTTTAGGGAAGCA 58.007 39.130 0.52 0.00 0.00 3.91
2582 2832 2.293170 TGATGAAATAATGGCGCGGAA 58.707 42.857 8.83 0.00 0.00 4.30
2596 2846 2.166870 GGTTTGCCATGCTCATGATGAA 59.833 45.455 11.17 0.81 41.20 2.57
2614 2864 3.265489 TGGGGAATGGAGTAGAAAGGTT 58.735 45.455 0.00 0.00 0.00 3.50
2656 2906 6.630071 TGGCTTTAAATATTTCAGCAGGTTC 58.370 36.000 23.80 12.77 31.50 3.62
2714 2964 7.224297 ACCTATCAAACAGTAACTGAACACAT 58.776 34.615 0.00 0.00 35.18 3.21
2763 3013 7.798516 GCATGAATCGGTAACAACATATTACTG 59.201 37.037 0.00 0.00 39.36 2.74
2780 3032 4.443063 CACTGCCATAAATTGCATGAATCG 59.557 41.667 0.00 0.00 36.79 3.34
2965 3217 5.294306 ACAACAGTGTGTGATTCAGTAACTG 59.706 40.000 15.73 15.73 38.27 3.16
3038 3290 7.624344 GCGCATAATATTAGCCAGGTAAAGAAG 60.624 40.741 0.30 0.00 0.00 2.85
3112 3364 9.547753 GATGAAGTAATCAGGAATTAGCAAGTA 57.452 33.333 0.00 0.00 42.53 2.24
3155 3407 2.509964 AGGAGAAACTTGTCCAGGTTGT 59.490 45.455 8.23 0.00 42.72 3.32
3216 3468 8.850007 AATCATAGACTGATGATCCAAAGATG 57.150 34.615 0.00 0.00 44.15 2.90
3419 3671 2.800544 CACCTGGTAGACACGTTTTCTG 59.199 50.000 0.00 0.00 0.00 3.02
3427 3679 4.219944 TGTCAATACTCACCTGGTAGACAC 59.780 45.833 0.00 0.00 0.00 3.67
3534 3786 1.619654 CAAGATGACCAACAGGCCAA 58.380 50.000 5.01 0.00 0.00 4.52
3577 3829 2.766313 TGCTCGCACTCATTAACAACT 58.234 42.857 0.00 0.00 0.00 3.16
3651 4362 8.745590 TGACTAACTATGATACTTGTGCTACAA 58.254 33.333 0.00 0.00 36.54 2.41
3683 4394 6.597280 GGCATAGTTCAGAACTTCAGATTTCT 59.403 38.462 21.05 0.00 42.81 2.52
3720 4431 6.456181 GCATAGTTCAGAACTTCAGATTTCCG 60.456 42.308 21.05 0.00 42.81 4.30
3768 4481 5.948162 AGCCATATCAAGTGTCTGTTCATTT 59.052 36.000 0.00 0.00 0.00 2.32
3777 4490 5.665459 AGTTCTACAGCCATATCAAGTGTC 58.335 41.667 0.00 0.00 0.00 3.67
3816 4529 3.382865 TGGCAGCAACAAACATTGTCTTA 59.617 39.130 0.00 0.00 44.59 2.10
3980 4693 6.931838 TGTTTACTCCCTGTACAGTATTCAG 58.068 40.000 21.18 11.11 0.00 3.02
4163 4876 5.918608 ACTTTACTCTCTGAACTTTCTGCA 58.081 37.500 0.00 0.00 0.00 4.41
4434 5151 5.924475 ATCACAAGAGAAACTAACCGTTG 57.076 39.130 0.00 0.00 35.61 4.10
4475 5195 7.435488 TGCTCGCTTCAAGATATTACTAAGAAC 59.565 37.037 0.00 0.00 0.00 3.01
4534 5254 7.094890 CCATGGAAGAAGCATAATGAGATGTAC 60.095 40.741 5.56 0.00 0.00 2.90
4586 5306 1.740025 GTAACTTGGGCATGAGTGAGC 59.260 52.381 0.00 0.00 0.00 4.26
4617 5337 2.031120 AGCCTTTTAGCACAACTGCAA 58.969 42.857 0.00 0.00 46.97 4.08
4656 5376 3.866703 TCACAGGTCTCGAGGAGATAT 57.133 47.619 13.56 0.00 40.98 1.63
4657 5377 3.280295 GTTCACAGGTCTCGAGGAGATA 58.720 50.000 13.56 0.00 40.98 1.98
4733 5453 4.880759 TGCGACACCAAATGATTTTTCAT 58.119 34.783 0.00 0.00 0.00 2.57
4869 5593 1.287425 GAGCGACAAGTAATTCCGGG 58.713 55.000 0.00 0.00 0.00 5.73
4878 5602 1.070758 ACATCCAGTTGAGCGACAAGT 59.929 47.619 0.00 1.13 42.15 3.16
4883 5607 1.071542 TGGAAACATCCAGTTGAGCGA 59.928 47.619 0.00 0.00 41.19 4.93
4899 5623 6.519679 TCTAGCACTAAAATACGTCTGGAA 57.480 37.500 0.00 0.00 0.00 3.53
4902 5626 9.119329 GATGTATCTAGCACTAAAATACGTCTG 57.881 37.037 16.16 0.00 36.55 3.51
4952 5676 6.941436 TGTTTATTTGTTATACTCCCACCGTT 59.059 34.615 0.00 0.00 0.00 4.44
4957 5681 8.110271 TCCACATGTTTATTTGTTATACTCCCA 58.890 33.333 0.00 0.00 0.00 4.37
4980 5706 6.828273 ACCAAATATCATCAAAACGATCTCCA 59.172 34.615 0.00 0.00 29.21 3.86
4985 5711 6.206395 TGCACCAAATATCATCAAAACGAT 57.794 33.333 0.00 0.00 33.27 3.73
5085 5905 1.503542 CCAGCGTGAAATCCTGCAC 59.496 57.895 0.00 0.00 0.00 4.57
5107 5927 1.491670 CCGACTTGAGCATGGTATCG 58.508 55.000 0.00 5.44 0.00 2.92
5146 5966 5.341872 TCGAATTAACCCACTATTTCCGA 57.658 39.130 0.00 0.00 0.00 4.55
5157 5977 8.358148 TCACAGTCTTCTATATCGAATTAACCC 58.642 37.037 0.00 0.00 0.00 4.11
5163 5983 8.226819 TCAACTCACAGTCTTCTATATCGAAT 57.773 34.615 0.00 0.00 0.00 3.34
5164 5984 7.625828 TCAACTCACAGTCTTCTATATCGAA 57.374 36.000 0.00 0.00 0.00 3.71
5166 5986 8.131731 TGAATCAACTCACAGTCTTCTATATCG 58.868 37.037 0.00 0.00 0.00 2.92
5266 6086 6.095300 CACAATGGCTTAAGGTGATACATTCA 59.905 38.462 4.29 0.00 0.00 2.57
5312 6159 2.159787 GCAATATGCGCAGGTAATCTCG 60.160 50.000 18.32 0.00 31.71 4.04
5328 6175 4.600692 TTATCTAGCGGCTGAAGCAATA 57.399 40.909 13.86 0.00 44.36 1.90
5369 6228 9.135843 CACTCAAAATGTAAACGATACAGAGTA 57.864 33.333 16.89 0.00 31.69 2.59
5371 6230 7.413000 CCCACTCAAAATGTAAACGATACAGAG 60.413 40.741 10.58 12.13 0.00 3.35
5372 6231 6.370442 CCCACTCAAAATGTAAACGATACAGA 59.630 38.462 10.58 3.60 0.00 3.41
5373 6232 6.370442 TCCCACTCAAAATGTAAACGATACAG 59.630 38.462 10.58 1.20 0.00 2.74
5389 6251 4.457603 CCAAAATGTAATCGTCCCACTCAA 59.542 41.667 0.00 0.00 0.00 3.02
5397 6259 3.168193 CAACGGCCAAAATGTAATCGTC 58.832 45.455 2.24 0.00 0.00 4.20
5418 6280 4.946784 AGGAGAATGTAATCGTGCAAAC 57.053 40.909 0.00 0.00 0.00 2.93
5444 6306 2.283145 AGCAGAGCACACTGGAAATT 57.717 45.000 0.00 0.00 38.22 1.82
5493 6355 2.808543 GGCCCTGTAAATATTCAGCGAG 59.191 50.000 0.00 0.00 0.00 5.03
5494 6356 2.486548 GGGCCCTGTAAATATTCAGCGA 60.487 50.000 17.04 0.00 0.00 4.93
5495 6357 1.880027 GGGCCCTGTAAATATTCAGCG 59.120 52.381 17.04 0.00 0.00 5.18
5496 6358 1.880027 CGGGCCCTGTAAATATTCAGC 59.120 52.381 22.43 0.00 0.00 4.26
5497 6359 3.139077 GACGGGCCCTGTAAATATTCAG 58.861 50.000 22.43 0.90 0.00 3.02
5498 6360 2.158726 GGACGGGCCCTGTAAATATTCA 60.159 50.000 22.43 0.00 0.00 2.57
5499 6361 2.105993 AGGACGGGCCCTGTAAATATTC 59.894 50.000 22.43 5.61 37.37 1.75
5500 6362 2.132686 AGGACGGGCCCTGTAAATATT 58.867 47.619 22.43 0.00 37.37 1.28
5511 6373 1.619807 TAGGTAAAGCAGGACGGGCC 61.620 60.000 0.00 0.00 0.00 5.80
5513 6375 0.177373 GGTAGGTAAAGCAGGACGGG 59.823 60.000 0.00 0.00 0.00 5.28
5515 6377 2.981859 ATGGTAGGTAAAGCAGGACG 57.018 50.000 0.00 0.00 0.00 4.79
5519 6381 6.811253 TGTTGTTAATGGTAGGTAAAGCAG 57.189 37.500 0.00 0.00 0.00 4.24
5530 6392 2.577700 TCGCTGGTTGTTGTTAATGGT 58.422 42.857 0.00 0.00 0.00 3.55
5540 6402 2.290641 GACTCAACATTTCGCTGGTTGT 59.709 45.455 0.00 0.00 41.87 3.32
5542 6404 2.549754 CTGACTCAACATTTCGCTGGTT 59.450 45.455 0.00 0.00 0.00 3.67
5544 6406 2.146342 ACTGACTCAACATTTCGCTGG 58.854 47.619 0.00 0.00 0.00 4.85
5547 6409 3.722082 CGCTTACTGACTCAACATTTCGC 60.722 47.826 0.00 0.00 0.00 4.70
5548 6410 3.428870 ACGCTTACTGACTCAACATTTCG 59.571 43.478 0.00 0.00 0.00 3.46
5549 6411 4.211374 ACACGCTTACTGACTCAACATTTC 59.789 41.667 0.00 0.00 0.00 2.17
5556 6418 2.863740 CAAACACACGCTTACTGACTCA 59.136 45.455 0.00 0.00 0.00 3.41
5557 6419 2.348591 GCAAACACACGCTTACTGACTC 60.349 50.000 0.00 0.00 0.00 3.36
5588 6450 3.567530 CGTGCTTGCAAATCATCAGAAA 58.432 40.909 0.00 0.00 0.00 2.52
5614 6476 5.665916 TGCTCAGTTAAGTCATCTGATCA 57.334 39.130 0.00 0.00 37.54 2.92
5641 6503 0.041312 CGCCAAAGACAACCTGAACG 60.041 55.000 0.00 0.00 0.00 3.95
5663 6525 1.451567 CAGCTGGGATGCCAGTCAG 60.452 63.158 31.17 18.58 39.75 3.51
5677 6539 0.033991 TTCTCTAGCCGTCTCCAGCT 60.034 55.000 0.00 0.00 43.20 4.24
5684 6546 3.440872 TCTCTGTTTCTTCTCTAGCCGTC 59.559 47.826 0.00 0.00 0.00 4.79
5695 6557 0.603975 GGTGGCGCTCTCTGTTTCTT 60.604 55.000 7.64 0.00 0.00 2.52
5730 6592 8.643752 TGTTCGTCTGTTTTTGAATTTTTCTTC 58.356 29.630 0.00 0.00 0.00 2.87
5743 6605 7.148869 GCTTGTTTTAAGTTGTTCGTCTGTTTT 60.149 33.333 0.00 0.00 0.00 2.43
5746 6608 5.106475 TGCTTGTTTTAAGTTGTTCGTCTGT 60.106 36.000 0.00 0.00 0.00 3.41
5747 6609 5.328691 TGCTTGTTTTAAGTTGTTCGTCTG 58.671 37.500 0.00 0.00 0.00 3.51
5749 6611 5.331532 GCATGCTTGTTTTAAGTTGTTCGTC 60.332 40.000 11.37 0.00 0.00 4.20
5750 6612 4.502645 GCATGCTTGTTTTAAGTTGTTCGT 59.497 37.500 11.37 0.00 0.00 3.85
5751 6613 4.739716 AGCATGCTTGTTTTAAGTTGTTCG 59.260 37.500 16.30 0.00 0.00 3.95
5752 6614 7.873739 ATAGCATGCTTGTTTTAAGTTGTTC 57.126 32.000 28.02 0.00 0.00 3.18
5924 6789 2.320367 CTCCAGTCTTTCGTTCTCGTG 58.680 52.381 0.00 0.00 38.33 4.35
6054 6925 3.134127 GCCCTTGTCGTGGATGGC 61.134 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.