Multiple sequence alignment - TraesCS6B01G361400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G361400 chr6B 100.000 2714 0 0 1 2714 632953785 632956498 0.000000e+00 5012.0
1 TraesCS6B01G361400 chr6D 92.981 1795 77 25 662 2446 420003606 420005361 0.000000e+00 2571.0
2 TraesCS6B01G361400 chr6D 96.943 229 6 1 10 238 420002691 420002918 1.520000e-102 383.0
3 TraesCS6B01G361400 chr6D 87.687 268 28 2 2451 2714 420005398 420005664 9.440000e-80 307.0
4 TraesCS6B01G361400 chr6D 86.905 168 13 7 237 400 420003076 420003238 2.150000e-41 180.0
5 TraesCS6B01G361400 chr6A 93.379 1465 41 25 674 2118 563025912 563027340 0.000000e+00 2117.0
6 TraesCS6B01G361400 chr6A 88.333 240 13 4 1 239 563025243 563025468 9.570000e-70 274.0
7 TraesCS6B01G361400 chr6A 96.753 154 5 0 2118 2271 563027462 563027615 9.640000e-65 257.0
8 TraesCS6B01G361400 chr6A 94.505 91 3 2 424 513 607959946 607960035 3.640000e-29 139.0
9 TraesCS6B01G361400 chr6A 90.323 93 9 0 2354 2446 563044407 563044499 3.670000e-24 122.0
10 TraesCS6B01G361400 chr6A 88.235 85 10 0 2274 2358 563027904 563027988 4.780000e-18 102.0
11 TraesCS6B01G361400 chr4B 90.341 176 15 2 1108 1282 455615827 455616001 2.100000e-56 230.0
12 TraesCS6B01G361400 chr4B 94.444 90 4 1 421 509 540037772 540037683 1.310000e-28 137.0
13 TraesCS6B01G361400 chr4A 90.341 176 15 2 1108 1282 93898293 93898119 2.100000e-56 230.0
14 TraesCS6B01G361400 chr4D 89.773 176 16 2 1108 1282 370530710 370530884 9.780000e-55 224.0
15 TraesCS6B01G361400 chr5D 95.652 92 3 1 422 512 297738339 297738430 2.180000e-31 147.0
16 TraesCS6B01G361400 chr3D 91.509 106 8 1 417 521 184367603 184367708 7.830000e-31 145.0
17 TraesCS6B01G361400 chr2B 94.444 90 4 1 421 509 212377933 212378022 1.310000e-28 137.0
18 TraesCS6B01G361400 chr7D 94.382 89 4 1 430 518 252265200 252265287 4.710000e-28 135.0
19 TraesCS6B01G361400 chr7D 88.119 101 9 1 1554 1654 123146767 123146864 1.710000e-22 117.0
20 TraesCS6B01G361400 chr7D 91.304 69 4 2 2035 2101 123147074 123147142 2.880000e-15 93.5
21 TraesCS6B01G361400 chr1B 91.753 97 6 2 413 508 526194703 526194608 1.700000e-27 134.0
22 TraesCS6B01G361400 chr1B 88.785 107 9 3 408 512 164770349 164770454 7.890000e-26 128.0
23 TraesCS6B01G361400 chr1B 89.524 105 6 3 407 510 181019760 181019660 7.890000e-26 128.0
24 TraesCS6B01G361400 chr7B 91.489 94 5 1 1554 1647 84221105 84221195 2.840000e-25 126.0
25 TraesCS6B01G361400 chr7B 91.304 69 4 2 2035 2101 84221417 84221485 2.880000e-15 93.5
26 TraesCS6B01G361400 chr7A 89.855 69 5 2 2035 2101 126034408 126034340 1.340000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G361400 chr6B 632953785 632956498 2713 False 5012.00 5012 100.000 1 2714 1 chr6B.!!$F1 2713
1 TraesCS6B01G361400 chr6D 420002691 420005664 2973 False 860.25 2571 91.129 10 2714 4 chr6D.!!$F1 2704
2 TraesCS6B01G361400 chr6A 563025243 563027988 2745 False 687.50 2117 91.675 1 2358 4 chr6A.!!$F3 2357

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
435 602 0.037232 AAGCAAGGTACTGCTCCGTC 60.037 55.0 9.8 0.0 40.72 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 2107 1.153289 CCTCCATGGCCAGTCGAAG 60.153 63.158 13.05 3.98 0.0 3.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.246458 GTGTCTCTAAATTCCTCGCTTGT 58.754 43.478 0.00 0.00 0.00 3.16
234 235 1.840181 CTGACATGCTGCGTACGTAT 58.160 50.000 17.90 4.03 0.00 3.06
235 236 2.857104 GCTGACATGCTGCGTACGTATA 60.857 50.000 17.90 5.03 0.00 1.47
238 401 5.305139 TGACATGCTGCGTACGTATATAT 57.695 39.130 17.90 4.38 0.00 0.86
252 415 8.743099 CGTACGTATATATGATCGAATTTGCAT 58.257 33.333 7.22 0.00 0.00 3.96
346 509 4.370917 TGTACCGAGGTGTACAAAAGAAC 58.629 43.478 4.80 0.00 45.94 3.01
351 514 4.211374 CCGAGGTGTACAAAAGAACAGAAG 59.789 45.833 0.00 0.00 0.00 2.85
354 517 5.368989 AGGTGTACAAAAGAACAGAAGAGG 58.631 41.667 0.00 0.00 0.00 3.69
356 519 5.820947 GGTGTACAAAAGAACAGAAGAGGAA 59.179 40.000 0.00 0.00 0.00 3.36
358 521 7.410485 GTGTACAAAAGAACAGAAGAGGAAAG 58.590 38.462 0.00 0.00 0.00 2.62
359 522 6.542370 TGTACAAAAGAACAGAAGAGGAAAGG 59.458 38.462 0.00 0.00 0.00 3.11
360 523 5.755849 ACAAAAGAACAGAAGAGGAAAGGA 58.244 37.500 0.00 0.00 0.00 3.36
363 526 7.178451 ACAAAAGAACAGAAGAGGAAAGGAAAA 59.822 33.333 0.00 0.00 0.00 2.29
369 532 6.842676 ACAGAAGAGGAAAGGAAAATACACT 58.157 36.000 0.00 0.00 0.00 3.55
435 602 0.037232 AAGCAAGGTACTGCTCCGTC 60.037 55.000 9.80 0.00 40.72 4.79
438 605 1.229082 AAGGTACTGCTCCGTCCCA 60.229 57.895 0.00 0.00 40.86 4.37
439 606 0.617820 AAGGTACTGCTCCGTCCCAT 60.618 55.000 0.00 0.00 40.86 4.00
455 622 7.274447 TCCGTCCCATAATATAAGACGTTTTT 58.726 34.615 17.31 0.00 46.62 1.94
524 787 9.761504 GGAGGGAGTACTTTGTAAATATAAGAC 57.238 37.037 0.00 0.00 0.00 3.01
579 842 8.845227 TGTAAGATGCTTTTTGATACTTTGACA 58.155 29.630 0.00 0.00 0.00 3.58
636 960 9.181061 AGAGAGTATTTAGAAACAGAGGTCTAC 57.819 37.037 0.00 0.00 0.00 2.59
639 963 7.548967 AGTATTTAGAAACAGAGGTCTACTGC 58.451 38.462 0.00 0.00 38.74 4.40
641 965 7.719871 ATTTAGAAACAGAGGTCTACTGCTA 57.280 36.000 0.00 0.00 38.74 3.49
642 966 7.719871 TTTAGAAACAGAGGTCTACTGCTAT 57.280 36.000 0.00 0.00 38.74 2.97
643 967 7.719871 TTAGAAACAGAGGTCTACTGCTATT 57.280 36.000 0.00 0.00 38.74 1.73
644 968 6.613153 AGAAACAGAGGTCTACTGCTATTT 57.387 37.500 0.00 0.00 38.74 1.40
645 969 7.010339 AGAAACAGAGGTCTACTGCTATTTT 57.990 36.000 0.00 0.00 38.74 1.82
646 970 7.454225 AGAAACAGAGGTCTACTGCTATTTTT 58.546 34.615 0.00 0.00 38.74 1.94
717 1041 4.559643 GGGCGAAATGGTTTTATACAAACG 59.440 41.667 0.00 0.00 0.00 3.60
723 1047 4.752661 TGGTTTTATACAAACGCAGACC 57.247 40.909 0.00 0.00 0.00 3.85
906 1231 0.394192 TCAACCTGCACTGGTCTCTG 59.606 55.000 0.00 0.00 39.83 3.35
927 1264 1.173444 ACACTCTCGGAGTTCAGCGT 61.173 55.000 4.69 0.00 41.37 5.07
946 1286 1.322936 GTCGCTCGCAGATCAAAGAAG 59.677 52.381 0.00 0.00 33.89 2.85
958 1298 5.235186 CAGATCAAAGAAGTCAAGTTCGTGT 59.765 40.000 0.00 0.00 0.00 4.49
1284 1633 1.374252 CGACCTCAACTTCCCCGTG 60.374 63.158 0.00 0.00 0.00 4.94
1473 1822 4.689549 TCGTCCTTCGGCTCCCCA 62.690 66.667 0.00 0.00 40.32 4.96
1733 2082 0.321919 TCGAGCTCAAATGCCAGCTT 60.322 50.000 15.40 0.00 46.31 3.74
1736 2085 0.321919 AGCTCAAATGCCAGCTTCGA 60.322 50.000 0.00 0.00 43.80 3.71
1739 2088 1.135315 CAAATGCCAGCTTCGACCG 59.865 57.895 0.00 0.00 0.00 4.79
1740 2089 1.003839 AAATGCCAGCTTCGACCGA 60.004 52.632 0.00 0.00 0.00 4.69
1741 2090 1.021390 AAATGCCAGCTTCGACCGAG 61.021 55.000 0.00 0.00 0.00 4.63
1742 2091 1.888436 AATGCCAGCTTCGACCGAGA 61.888 55.000 0.00 0.00 0.00 4.04
1743 2092 2.202676 GCCAGCTTCGACCGAGAG 60.203 66.667 0.00 0.00 0.00 3.20
1744 2093 2.202676 CCAGCTTCGACCGAGAGC 60.203 66.667 14.22 14.22 0.00 4.09
1745 2094 2.705821 CCAGCTTCGACCGAGAGCT 61.706 63.158 17.03 17.03 36.12 4.09
1746 2095 1.214062 CAGCTTCGACCGAGAGCTT 59.786 57.895 18.88 8.38 33.09 3.74
1747 2096 0.800300 CAGCTTCGACCGAGAGCTTC 60.800 60.000 18.88 0.00 33.09 3.86
1794 2143 1.098050 GGCCATTTCATGCTTCGACT 58.902 50.000 0.00 0.00 0.00 4.18
2045 2398 2.157640 TTATGCATTTGTGGGGGAGG 57.842 50.000 3.54 0.00 0.00 4.30
2196 2671 8.965986 ATTACCTCTTTAATTTTGCTTCGTTC 57.034 30.769 0.00 0.00 0.00 3.95
2229 2704 8.305317 AGTACTCTACATGTTCTAAAGTCAACC 58.695 37.037 2.30 0.00 0.00 3.77
2271 2746 6.716628 TGGCAGAAGAGTCACATTTTCTATTT 59.283 34.615 0.00 0.00 0.00 1.40
2289 3050 8.723942 TTCTATTTGAAGAGAGTGAAATAGCC 57.276 34.615 0.00 0.00 37.90 3.93
2290 3051 6.980978 TCTATTTGAAGAGAGTGAAATAGCCG 59.019 38.462 0.00 0.00 37.90 5.52
2306 3067 3.041508 AGCCGTTCCAAAGTAGAGTTC 57.958 47.619 0.00 0.00 0.00 3.01
2317 3078 7.792032 TCCAAAGTAGAGTTCTTTTCAAGAGA 58.208 34.615 0.00 0.00 39.03 3.10
2402 3163 0.958382 GGCGGTTGGCTAATGTCACA 60.958 55.000 0.00 0.00 42.94 3.58
2403 3164 0.168128 GCGGTTGGCTAATGTCACAC 59.832 55.000 0.00 0.00 39.11 3.82
2413 3174 4.142816 GGCTAATGTCACACATCACTTGTC 60.143 45.833 0.00 0.00 37.97 3.18
2423 3184 1.603802 CATCACTTGTCGTGCCACTTT 59.396 47.619 0.00 0.00 43.46 2.66
2429 3190 2.902705 TGTCGTGCCACTTTCTAGTT 57.097 45.000 0.00 0.00 30.26 2.24
2430 3191 3.188159 TGTCGTGCCACTTTCTAGTTT 57.812 42.857 0.00 0.00 30.26 2.66
2447 3208 7.869016 TCTAGTTTGTGTCTTGATAAGTTCG 57.131 36.000 0.00 0.00 0.00 3.95
2448 3209 5.924475 AGTTTGTGTCTTGATAAGTTCGG 57.076 39.130 0.00 0.00 0.00 4.30
2449 3210 5.607477 AGTTTGTGTCTTGATAAGTTCGGA 58.393 37.500 0.00 0.00 0.00 4.55
2549 3346 5.891551 ACATATATTTTGGTGGTCTGAACCC 59.108 40.000 0.00 0.00 45.83 4.11
2559 3356 2.105821 TGGTCTGAACCCGACTCAAAAT 59.894 45.455 0.00 0.00 45.83 1.82
2590 3387 4.008074 ACAAGTACATTGGACCTCACTG 57.992 45.455 0.00 0.00 43.68 3.66
2591 3388 2.744202 CAAGTACATTGGACCTCACTGC 59.256 50.000 0.00 0.00 35.08 4.40
2634 3431 9.352784 GAAATTTCATTGGAACATCGTTGAATA 57.647 29.630 13.40 0.00 39.30 1.75
2638 3435 8.686397 TTCATTGGAACATCGTTGAATATTTG 57.314 30.769 0.00 0.00 39.30 2.32
2651 3448 6.074569 CGTTGAATATTTGAACCGTGCTTTTT 60.075 34.615 0.00 0.00 0.00 1.94
2655 3452 6.827586 ATATTTGAACCGTGCTTTTTCCTA 57.172 33.333 0.00 0.00 0.00 2.94
2674 3471 3.066342 CCTACGTATATAGGATGCACCCG 59.934 52.174 9.36 0.00 44.12 5.28
2681 3478 1.491668 TAGGATGCACCCGCTTCTTA 58.508 50.000 0.00 0.00 41.05 2.10
2684 3481 1.440145 GATGCACCCGCTTCTTAGCC 61.440 60.000 0.00 0.00 44.86 3.93
2690 3487 2.401195 CGCTTCTTAGCCGCTTGC 59.599 61.111 0.00 0.00 44.86 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 3.950794 TTCGGTGATCGCTGGGCAC 62.951 63.158 15.01 0.00 39.05 5.01
104 105 4.745837 GCTCATTATGATTGGTCTGAGC 57.254 45.455 6.59 6.59 45.90 4.26
107 108 3.186001 GCTCGCTCATTATGATTGGTCTG 59.814 47.826 0.00 0.00 0.00 3.51
235 236 8.242053 GGAAAGATCATGCAAATTCGATCATAT 58.758 33.333 12.81 2.85 37.36 1.78
238 401 5.357596 TGGAAAGATCATGCAAATTCGATCA 59.642 36.000 12.81 0.00 37.36 2.92
252 415 7.975616 GCTTAACTGCAAATAATGGAAAGATCA 59.024 33.333 0.00 0.00 0.00 2.92
269 432 4.455877 ACACTAAGGAACATGCTTAACTGC 59.544 41.667 0.00 0.00 29.91 4.40
329 492 5.047847 TCTTCTGTTCTTTTGTACACCTCG 58.952 41.667 0.00 0.00 0.00 4.63
331 494 5.130477 TCCTCTTCTGTTCTTTTGTACACCT 59.870 40.000 0.00 0.00 0.00 4.00
346 509 7.164803 AGAGTGTATTTTCCTTTCCTCTTCTG 58.835 38.462 0.00 0.00 0.00 3.02
351 514 8.794335 AACATAGAGTGTATTTTCCTTTCCTC 57.206 34.615 0.00 0.00 41.14 3.71
354 517 8.794335 AGGAACATAGAGTGTATTTTCCTTTC 57.206 34.615 17.81 0.00 39.68 2.62
403 570 8.766151 GCAGTACCTTGCTTCTAATCTAAATAC 58.234 37.037 0.04 0.00 40.89 1.89
405 572 7.793927 GCAGTACCTTGCTTCTAATCTAAAT 57.206 36.000 0.04 0.00 40.89 1.40
420 587 0.617820 ATGGGACGGAGCAGTACCTT 60.618 55.000 9.25 1.26 45.45 3.50
421 588 0.260816 TATGGGACGGAGCAGTACCT 59.739 55.000 9.25 0.00 45.45 3.08
422 589 1.117150 TTATGGGACGGAGCAGTACC 58.883 55.000 1.72 1.72 45.45 3.34
423 590 4.803098 ATATTATGGGACGGAGCAGTAC 57.197 45.455 0.00 0.00 0.00 2.73
425 592 5.047235 GTCTTATATTATGGGACGGAGCAGT 60.047 44.000 0.00 0.00 0.00 4.40
427 594 4.082408 CGTCTTATATTATGGGACGGAGCA 60.082 45.833 17.59 0.00 43.69 4.26
428 595 4.421948 CGTCTTATATTATGGGACGGAGC 58.578 47.826 17.59 0.00 43.69 4.70
476 643 7.495934 CCTCCGTCTCATAATGTAAGATGTTTT 59.504 37.037 0.00 0.00 0.00 2.43
481 728 5.394738 TCCCTCCGTCTCATAATGTAAGAT 58.605 41.667 0.00 0.00 0.00 2.40
491 738 2.761208 CAAAGTACTCCCTCCGTCTCAT 59.239 50.000 0.00 0.00 0.00 2.90
560 823 6.094742 TGACACTGTCAAAGTATCAAAAAGCA 59.905 34.615 9.54 0.00 39.40 3.91
561 824 6.494842 TGACACTGTCAAAGTATCAAAAAGC 58.505 36.000 9.54 0.00 39.40 3.51
595 917 7.934855 AATACTCTCTGTTCAGAAATGCAAT 57.065 32.000 4.09 0.00 0.00 3.56
604 926 9.352784 CTCTGTTTCTAAATACTCTCTGTTCAG 57.647 37.037 0.00 0.00 0.00 3.02
605 927 8.307483 CCTCTGTTTCTAAATACTCTCTGTTCA 58.693 37.037 0.00 0.00 0.00 3.18
606 928 8.308207 ACCTCTGTTTCTAAATACTCTCTGTTC 58.692 37.037 0.00 0.00 0.00 3.18
607 929 8.196378 ACCTCTGTTTCTAAATACTCTCTGTT 57.804 34.615 0.00 0.00 0.00 3.16
645 969 6.252995 AGCATTATAGACCTTCCCACAAAAA 58.747 36.000 0.00 0.00 0.00 1.94
646 970 5.826643 AGCATTATAGACCTTCCCACAAAA 58.173 37.500 0.00 0.00 0.00 2.44
647 971 5.450818 AGCATTATAGACCTTCCCACAAA 57.549 39.130 0.00 0.00 0.00 2.83
648 972 6.569127 TTAGCATTATAGACCTTCCCACAA 57.431 37.500 0.00 0.00 0.00 3.33
649 973 6.763715 ATTAGCATTATAGACCTTCCCACA 57.236 37.500 0.00 0.00 0.00 4.17
650 974 7.334671 GCTTATTAGCATTATAGACCTTCCCAC 59.665 40.741 0.00 0.00 46.95 4.61
651 975 7.394816 GCTTATTAGCATTATAGACCTTCCCA 58.605 38.462 0.00 0.00 46.95 4.37
652 976 7.851387 GCTTATTAGCATTATAGACCTTCCC 57.149 40.000 0.00 0.00 46.95 3.97
665 989 8.220375 ATCACGCTGATACAAGCTTATTAGCAT 61.220 37.037 19.99 7.51 41.75 3.79
666 990 6.960232 ATCACGCTGATACAAGCTTATTAGCA 60.960 38.462 19.99 13.25 41.75 3.49
667 991 5.406780 ATCACGCTGATACAAGCTTATTAGC 59.593 40.000 13.41 13.41 40.56 3.09
717 1041 0.676184 TGTGTGTCTCTCTGGTCTGC 59.324 55.000 0.00 0.00 0.00 4.26
723 1047 4.576053 TGAAATTGGTTGTGTGTCTCTCTG 59.424 41.667 0.00 0.00 0.00 3.35
832 1157 2.111878 GTGCAGGCAGAGTGGTGT 59.888 61.111 0.00 0.00 0.00 4.16
906 1231 1.011451 GCTGAACTCCGAGAGTGTGC 61.011 60.000 1.33 8.21 42.59 4.57
927 1264 1.067565 ACTTCTTTGATCTGCGAGCGA 60.068 47.619 0.00 0.00 0.00 4.93
936 1273 5.234329 TGACACGAACTTGACTTCTTTGATC 59.766 40.000 0.00 0.00 0.00 2.92
946 1286 0.229753 CGCTGTGACACGAACTTGAC 59.770 55.000 0.22 0.00 0.00 3.18
958 1298 4.103103 CGACGCTCCTCGCTGTGA 62.103 66.667 0.00 0.00 43.23 3.58
1284 1633 3.607370 GACGTGGAAGGGGAGGTGC 62.607 68.421 0.00 0.00 0.00 5.01
1447 1796 2.297912 CGAAGGACGACGCGTTGTT 61.298 57.895 31.47 17.40 45.77 2.83
1607 1956 1.221566 CTGCACGGGTCCATCATCA 59.778 57.895 0.00 0.00 0.00 3.07
1754 2103 2.169789 CATGGCCAGTCGAAGCTCG 61.170 63.158 13.05 0.00 42.10 5.03
1755 2104 1.817099 CCATGGCCAGTCGAAGCTC 60.817 63.158 13.05 0.00 0.00 4.09
1756 2105 2.249413 CTCCATGGCCAGTCGAAGCT 62.249 60.000 13.05 0.00 0.00 3.74
1757 2106 1.817099 CTCCATGGCCAGTCGAAGC 60.817 63.158 13.05 0.00 0.00 3.86
1758 2107 1.153289 CCTCCATGGCCAGTCGAAG 60.153 63.158 13.05 3.98 0.00 3.79
1759 2108 2.989639 CCTCCATGGCCAGTCGAA 59.010 61.111 13.05 0.00 0.00 3.71
1777 2126 2.086869 ACCAGTCGAAGCATGAAATGG 58.913 47.619 0.00 0.00 46.86 3.16
1785 2134 2.143122 GTGATTTGACCAGTCGAAGCA 58.857 47.619 13.36 13.36 44.37 3.91
1794 2143 3.500448 TGCTTAGTGGTGATTTGACCA 57.500 42.857 0.00 0.00 44.09 4.02
2018 2370 3.370739 CCCACAAATGCATAATTGGCCTT 60.371 43.478 14.12 0.00 0.00 4.35
2045 2398 6.037610 CCTTAAAACATGTAGCTCCATCAGAC 59.962 42.308 0.00 0.00 0.00 3.51
2196 2671 8.734218 TTAGAACATGTAGAGTACTCACCTAG 57.266 38.462 24.44 13.15 0.00 3.02
2229 2704 3.420893 TGCCATGTCTCCTAACCAAAAG 58.579 45.455 0.00 0.00 0.00 2.27
2271 2746 4.495422 GAACGGCTATTTCACTCTCTTCA 58.505 43.478 0.00 0.00 0.00 3.02
2289 3050 6.598753 TGAAAAGAACTCTACTTTGGAACG 57.401 37.500 0.00 0.00 37.59 3.95
2317 3078 3.761752 CGGGGTTTCTTATGATGTTGGTT 59.238 43.478 0.00 0.00 0.00 3.67
2319 3080 2.687935 CCGGGGTTTCTTATGATGTTGG 59.312 50.000 0.00 0.00 0.00 3.77
2413 3174 2.612212 ACACAAACTAGAAAGTGGCACG 59.388 45.455 12.71 0.00 35.62 5.34
2423 3184 6.866770 CCGAACTTATCAAGACACAAACTAGA 59.133 38.462 0.00 0.00 0.00 2.43
2429 3190 8.664798 CATATTTCCGAACTTATCAAGACACAA 58.335 33.333 0.00 0.00 0.00 3.33
2430 3191 7.201609 GCATATTTCCGAACTTATCAAGACACA 60.202 37.037 0.00 0.00 0.00 3.72
2446 3207 7.253950 AAATTTCCGAAATTTCGCATATTTCCG 60.254 33.333 30.49 15.95 45.32 4.30
2447 3208 7.905126 AAATTTCCGAAATTTCGCATATTTCC 58.095 30.769 30.49 0.00 45.32 3.13
2539 3336 2.249844 TTTTGAGTCGGGTTCAGACC 57.750 50.000 0.00 0.00 45.75 3.85
2547 3344 1.535462 ACGCTGAAATTTTGAGTCGGG 59.465 47.619 13.41 0.00 0.00 5.14
2549 3346 4.768145 TGTAACGCTGAAATTTTGAGTCG 58.232 39.130 9.48 9.48 0.00 4.18
2559 3356 5.049954 GTCCAATGTACTTGTAACGCTGAAA 60.050 40.000 0.00 0.00 32.61 2.69
2614 3411 8.049655 TCAAATATTCAACGATGTTCCAATGA 57.950 30.769 0.00 0.00 0.00 2.57
2620 3417 6.248420 CACGGTTCAAATATTCAACGATGTTC 59.752 38.462 6.68 0.00 0.00 3.18
2624 3421 4.394920 AGCACGGTTCAAATATTCAACGAT 59.605 37.500 6.68 0.00 0.00 3.73
2626 3423 4.078363 AGCACGGTTCAAATATTCAACG 57.922 40.909 0.00 0.00 0.00 4.10
2634 3431 4.555906 CGTAGGAAAAAGCACGGTTCAAAT 60.556 41.667 0.00 0.00 0.00 2.32
2638 3435 1.869132 ACGTAGGAAAAAGCACGGTTC 59.131 47.619 0.00 0.00 38.67 3.62
2655 3452 1.203994 GCGGGTGCATCCTATATACGT 59.796 52.381 15.59 0.00 42.15 3.57
2690 3487 0.872021 GATGAACCTCGTAGCTGCCG 60.872 60.000 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.