Multiple sequence alignment - TraesCS6B01G361300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G361300 chr6B 100.000 3608 0 0 1 3608 632883050 632886657 0.000000e+00 6663
1 TraesCS6B01G361300 chr6D 92.327 1577 82 18 42 1587 419887843 419889411 0.000000e+00 2206
2 TraesCS6B01G361300 chr6D 93.695 1475 71 12 1586 3047 419889453 419890918 0.000000e+00 2189
3 TraesCS6B01G361300 chr6D 92.128 470 27 7 13 476 419886976 419887441 0.000000e+00 654
4 TraesCS6B01G361300 chr6D 81.538 780 118 20 1203 1974 163354726 163353965 1.420000e-173 619
5 TraesCS6B01G361300 chr6D 86.486 555 46 13 3056 3608 419891049 419891576 1.870000e-162 582
6 TraesCS6B01G361300 chr6A 87.382 1482 118 31 473 1913 562939276 562940729 0.000000e+00 1637
7 TraesCS6B01G361300 chr6A 89.195 1305 98 20 1503 2788 562941812 562943092 0.000000e+00 1589
8 TraesCS6B01G361300 chr6A 91.404 919 48 10 1912 2808 562940890 562941799 0.000000e+00 1230
9 TraesCS6B01G361300 chr6A 91.785 633 37 11 2979 3608 562943456 562944076 0.000000e+00 867
10 TraesCS6B01G361300 chr6A 89.552 201 13 6 2786 2980 562943173 562943371 7.740000e-62 248
11 TraesCS6B01G361300 chr1A 83.015 1466 186 45 948 2376 506283799 506282360 0.000000e+00 1269
12 TraesCS6B01G361300 chr1D 82.600 1454 198 41 948 2376 410466348 410464925 0.000000e+00 1232
13 TraesCS6B01G361300 chr1B 82.477 993 133 30 948 1925 553019205 553018239 0.000000e+00 832
14 TraesCS6B01G361300 chr1B 86.026 458 49 9 1933 2376 553018147 553017691 9.060000e-131 477
15 TraesCS6B01G361300 chr4D 81.325 664 105 13 1317 1974 447981341 447980691 4.130000e-144 521
16 TraesCS6B01G361300 chr2B 82.241 473 76 6 1504 1974 654361146 654361612 5.610000e-108 401
17 TraesCS6B01G361300 chr5B 82.030 473 77 6 1504 1974 614979994 614980460 2.610000e-106 396


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G361300 chr6B 632883050 632886657 3607 False 6663.00 6663 100.0000 1 3608 1 chr6B.!!$F1 3607
1 TraesCS6B01G361300 chr6D 419886976 419891576 4600 False 1407.75 2206 91.1590 13 3608 4 chr6D.!!$F1 3595
2 TraesCS6B01G361300 chr6D 163353965 163354726 761 True 619.00 619 81.5380 1203 1974 1 chr6D.!!$R1 771
3 TraesCS6B01G361300 chr6A 562939276 562944076 4800 False 1114.20 1637 89.8636 473 3608 5 chr6A.!!$F1 3135
4 TraesCS6B01G361300 chr1A 506282360 506283799 1439 True 1269.00 1269 83.0150 948 2376 1 chr1A.!!$R1 1428
5 TraesCS6B01G361300 chr1D 410464925 410466348 1423 True 1232.00 1232 82.6000 948 2376 1 chr1D.!!$R1 1428
6 TraesCS6B01G361300 chr1B 553017691 553019205 1514 True 654.50 832 84.2515 948 2376 2 chr1B.!!$R1 1428
7 TraesCS6B01G361300 chr4D 447980691 447981341 650 True 521.00 521 81.3250 1317 1974 1 chr4D.!!$R1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.244721 GTCTGCATTTCTTGGGTGGC 59.755 55.0 0.0 0.0 0.00 5.01 F
670 1556 0.744874 GTGGTGTATCGCTCAGCCTA 59.255 55.0 0.0 0.0 33.13 3.93 F
1736 2680 0.874390 TCGATGCCTTTTCACAGCAC 59.126 50.0 0.0 0.0 39.77 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 2667 0.178992 TGGGAGGTGCTGTGAAAAGG 60.179 55.000 0.00 0.0 0.00 3.11 R
2522 5077 1.078918 CTGACCTCAGATTGGCGCA 60.079 57.895 10.83 0.0 46.59 6.09 R
3359 6216 0.042535 CGCAGAAAAACGCGTCTTCA 60.043 50.000 26.46 0.0 46.23 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.878211 TGATAGGATGGGTGCAGTGA 58.122 50.000 0.00 0.00 0.00 3.41
62 63 0.244721 GTCTGCATTTCTTGGGTGGC 59.755 55.000 0.00 0.00 0.00 5.01
92 93 7.563888 TGCTCTTCTTTTGGATGATAATCAG 57.436 36.000 0.00 0.00 0.00 2.90
108 109 8.014070 TGATAATCAGAATTACCGTCCTGTTA 57.986 34.615 0.00 0.00 30.27 2.41
123 124 8.200120 ACCGTCCTGTTATTTTATAGTAGAACC 58.800 37.037 0.00 0.00 0.00 3.62
141 145 2.375146 ACCCAAGAACTTTTGAACGCT 58.625 42.857 0.00 0.00 0.00 5.07
173 177 8.962679 TGGTAACTTGGTATACAAATTCCAATC 58.037 33.333 5.01 0.00 40.52 2.67
179 183 6.887545 TTGGTATACAAATTCCAATCGGAACT 59.112 34.615 5.01 0.00 43.53 3.01
192 196 5.395768 CCAATCGGAACTGAGGACTTAAGAT 60.396 44.000 10.09 0.00 0.00 2.40
203 207 3.137533 GGACTTAAGATGGATCAGCTGC 58.862 50.000 9.47 0.00 27.64 5.25
204 208 3.432749 GGACTTAAGATGGATCAGCTGCA 60.433 47.826 9.47 1.20 27.64 4.41
206 210 4.135306 ACTTAAGATGGATCAGCTGCATG 58.865 43.478 9.47 0.00 35.83 4.06
207 211 2.730934 AAGATGGATCAGCTGCATGT 57.269 45.000 9.47 2.55 35.83 3.21
208 212 3.851458 AAGATGGATCAGCTGCATGTA 57.149 42.857 9.47 0.00 35.83 2.29
226 230 3.282021 TGTAGTAGCTCCGAATTACCGT 58.718 45.455 0.00 0.00 0.00 4.83
270 274 6.750148 ACCCGAGAACTATAGAATGCTTTAG 58.250 40.000 6.78 0.00 33.49 1.85
320 324 3.756963 GAGGGCTTAAAGGTGGTTTGTAG 59.243 47.826 0.00 0.00 0.00 2.74
323 327 4.342951 GGGCTTAAAGGTGGTTTGTAGTTT 59.657 41.667 0.00 0.00 0.00 2.66
325 329 5.508489 GGCTTAAAGGTGGTTTGTAGTTTCC 60.508 44.000 0.00 0.00 0.00 3.13
327 331 6.406065 GCTTAAAGGTGGTTTGTAGTTTCCAA 60.406 38.462 0.00 0.00 0.00 3.53
362 366 9.823647 CTATGTTGTTTGTATAGAATCTGAGGT 57.176 33.333 0.00 0.00 0.00 3.85
407 411 6.995511 TGGTGCTATTGTTGTAAGGATAAC 57.004 37.500 0.00 0.00 0.00 1.89
450 456 3.051617 TCGGAGTGACAGTGTGGAT 57.948 52.632 0.00 0.00 0.00 3.41
453 1306 1.205655 CGGAGTGACAGTGTGGATGAT 59.794 52.381 0.00 0.00 0.00 2.45
457 1310 4.813161 GGAGTGACAGTGTGGATGATATTG 59.187 45.833 0.00 0.00 0.00 1.90
513 1379 8.586570 TTTTGTGATTATTAAGCAGTTTGTGG 57.413 30.769 0.00 0.00 0.00 4.17
595 1462 7.653647 TGTTGTGGTAAATCTATGGTTGTTTC 58.346 34.615 0.00 0.00 0.00 2.78
596 1463 7.285629 TGTTGTGGTAAATCTATGGTTGTTTCA 59.714 33.333 0.00 0.00 0.00 2.69
660 1546 3.838244 TGAAGGGCATAGTGGTGTATC 57.162 47.619 0.00 0.00 0.00 2.24
670 1556 0.744874 GTGGTGTATCGCTCAGCCTA 59.255 55.000 0.00 0.00 33.13 3.93
822 1708 4.374702 GTGCCGCACAAGCAGTCG 62.375 66.667 18.79 0.00 41.87 4.18
887 1774 9.699703 TTTTGTTATGGGTTAGTTTAGCAAATC 57.300 29.630 0.00 0.00 29.13 2.17
889 1776 8.644374 TGTTATGGGTTAGTTTAGCAAATCTT 57.356 30.769 0.00 0.00 0.00 2.40
909 1796 6.949352 TCTTTCTAATTCAATCTCCCATGC 57.051 37.500 0.00 0.00 0.00 4.06
916 1803 4.789012 TTCAATCTCCCATGCTTCAAAC 57.211 40.909 0.00 0.00 0.00 2.93
945 1832 1.071385 ACAGAACAGAACTGCCTGAGG 59.929 52.381 21.99 0.00 38.74 3.86
1015 1902 9.039870 GTAAGAGAGACATGAAAGATACATTGG 57.960 37.037 0.00 0.00 0.00 3.16
1040 1927 3.608316 ACAGCCTGAGAAGAAGCTTAG 57.392 47.619 0.00 0.00 31.93 2.18
1055 1942 3.851098 AGCTTAGTCACAGAATTCGTCC 58.149 45.455 0.00 0.00 0.00 4.79
1130 2019 7.600065 AGCATCAATTTTACATGATATGAGCC 58.400 34.615 0.00 0.00 34.61 4.70
1161 2058 4.537015 CTTTTCTGGCCTTTGTAGTTTCG 58.463 43.478 3.32 0.00 0.00 3.46
1245 2142 4.002982 TGCATCTCAGGTTGTTACATGAC 58.997 43.478 0.00 0.00 39.91 3.06
1308 2209 5.863935 GCTGGTGGTTCTGTTTATGAAAATC 59.136 40.000 0.00 0.00 0.00 2.17
1355 2256 6.877611 TGTTTTGGCTTTTCCTAGAGTAAG 57.122 37.500 0.00 0.00 35.26 2.34
1452 2353 8.459635 TGGATATTTGCTCTATCTCGTGTATAC 58.540 37.037 0.00 0.00 0.00 1.47
1723 2667 3.811722 TGTCATGTTCTTTGTCGATGC 57.188 42.857 0.00 0.00 0.00 3.91
1736 2680 0.874390 TCGATGCCTTTTCACAGCAC 59.126 50.000 0.00 0.00 39.77 4.40
1769 2714 5.875224 TGGAGATACCAACAGTTTTGATCA 58.125 37.500 0.00 0.00 46.75 2.92
1861 2818 6.331369 ACCATTCCTACATGAACAAACAAG 57.669 37.500 0.00 0.00 0.00 3.16
2021 4549 5.335976 CCTTTTTATCTGTTCTGGTTCAGGC 60.336 44.000 0.00 0.00 33.13 4.85
2200 4743 5.146010 TGGTATGGCCAAAATTTCTGAAC 57.854 39.130 10.96 0.00 45.94 3.18
2234 4779 8.576442 TCTTTTTCCTTAACTTAATGCTTCTGG 58.424 33.333 0.00 0.00 0.00 3.86
2422 4972 9.769093 AACGCAGTGTTTAATACTGAATTTATC 57.231 29.630 22.72 5.04 45.00 1.75
2522 5077 2.158696 GGTCAGATAAAGAGCTGGGCAT 60.159 50.000 0.00 0.00 39.67 4.40
2715 5270 1.072489 TGTTTGCTCACGGGATTACCA 59.928 47.619 0.00 0.00 40.22 3.25
2746 5306 6.487103 GGATGCAAATAGTACAGTTGTTAGC 58.513 40.000 0.00 0.00 34.68 3.09
2754 5314 5.007385 AGTACAGTTGTTAGCCCGAATAG 57.993 43.478 0.00 0.00 0.00 1.73
2796 5439 5.701290 GCCTTTACAATGTACTGAACAGAGT 59.299 40.000 8.87 0.00 42.70 3.24
2800 5443 4.299155 ACAATGTACTGAACAGAGTGTCG 58.701 43.478 8.87 0.00 42.70 4.35
2808 5457 0.830444 AACAGAGTGTCGGGGTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
2833 5482 3.621268 GCAACACCATATTCGCTCTGTAA 59.379 43.478 0.00 0.00 0.00 2.41
2856 5505 1.108727 CCACAGAAACAGGCTGCCAA 61.109 55.000 22.65 0.00 36.86 4.52
2928 5577 3.634504 TCAGCCATCAAATATGCAAGGT 58.365 40.909 0.00 0.00 0.00 3.50
2936 5585 4.965814 TCAAATATGCAAGGTTTTTGCCA 58.034 34.783 9.15 0.00 44.32 4.92
3005 5740 1.129917 ATCTCATGCAGTCTGGGAGG 58.870 55.000 1.14 0.00 0.00 4.30
3006 5741 0.041684 TCTCATGCAGTCTGGGAGGA 59.958 55.000 1.14 0.00 0.00 3.71
3007 5742 0.464870 CTCATGCAGTCTGGGAGGAG 59.535 60.000 1.14 0.00 31.04 3.69
3100 5957 5.018539 AGTGTGTTGTAAAGTACAGCTGA 57.981 39.130 23.35 0.48 40.11 4.26
3117 5974 7.042797 ACAGCTGAAAAATACACATTCTGTT 57.957 32.000 23.35 0.00 33.91 3.16
3123 5980 3.476295 AATACACATTCTGTTGCTGCG 57.524 42.857 0.00 0.00 33.91 5.18
3199 6056 4.583871 AGGCTAAGAGAGTGAACCAAATG 58.416 43.478 0.00 0.00 0.00 2.32
3229 6086 3.057315 CGGTTGCCAGAAGAAACATCAAT 60.057 43.478 0.00 0.00 0.00 2.57
3276 6133 3.914984 TGCTAACAGAGACTGGTGC 57.085 52.632 0.00 2.70 35.51 5.01
3338 6195 7.315142 TGTCTGGAACATTAAAATCTTGATGC 58.685 34.615 0.00 0.00 38.20 3.91
3359 6216 6.782082 TGCAGAGAAGAGAATATACTGTGT 57.218 37.500 0.00 0.00 0.00 3.72
3414 6272 0.439985 TGTGACGAGACGCTACGTAC 59.560 55.000 0.00 0.00 41.37 3.67
3421 6279 2.655051 CGAGACGCTACGTACGTGATAC 60.655 54.545 30.25 16.52 45.24 2.24
3442 6300 2.028883 CCGACGCGTCCTCTTTATTTTC 59.971 50.000 31.84 4.63 0.00 2.29
3591 6450 2.740055 GCACTCCTCAGCACCACG 60.740 66.667 0.00 0.00 0.00 4.94
3604 6463 1.268999 GCACCACGCTTTGATTGTGAA 60.269 47.619 0.00 0.00 37.77 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.167892 TGCACCCATCCTATCAACCTAAAT 59.832 41.667 0.00 0.00 0.00 1.40
1 2 3.525609 TGCACCCATCCTATCAACCTAAA 59.474 43.478 0.00 0.00 0.00 1.85
3 4 2.705658 CTGCACCCATCCTATCAACCTA 59.294 50.000 0.00 0.00 0.00 3.08
4 5 1.492176 CTGCACCCATCCTATCAACCT 59.508 52.381 0.00 0.00 0.00 3.50
5 6 1.212935 ACTGCACCCATCCTATCAACC 59.787 52.381 0.00 0.00 0.00 3.77
6 7 2.092968 TCACTGCACCCATCCTATCAAC 60.093 50.000 0.00 0.00 0.00 3.18
7 8 2.195727 TCACTGCACCCATCCTATCAA 58.804 47.619 0.00 0.00 0.00 2.57
8 9 1.878211 TCACTGCACCCATCCTATCA 58.122 50.000 0.00 0.00 0.00 2.15
9 10 2.171448 ACTTCACTGCACCCATCCTATC 59.829 50.000 0.00 0.00 0.00 2.08
10 11 2.092753 CACTTCACTGCACCCATCCTAT 60.093 50.000 0.00 0.00 0.00 2.57
11 12 1.278985 CACTTCACTGCACCCATCCTA 59.721 52.381 0.00 0.00 0.00 2.94
27 28 0.390860 AGACAGCGTGCTCTTCACTT 59.609 50.000 0.00 0.00 43.46 3.16
62 63 6.688637 TCATCCAAAAGAAGAGCATGTATG 57.311 37.500 0.00 0.00 0.00 2.39
79 80 6.270000 AGGACGGTAATTCTGATTATCATCCA 59.730 38.462 7.13 0.00 32.49 3.41
80 81 6.591834 CAGGACGGTAATTCTGATTATCATCC 59.408 42.308 0.00 0.00 29.77 3.51
119 120 3.113322 GCGTTCAAAAGTTCTTGGGTTC 58.887 45.455 0.00 0.00 0.00 3.62
120 121 2.758423 AGCGTTCAAAAGTTCTTGGGTT 59.242 40.909 0.00 0.00 0.00 4.11
122 123 3.436700 AAGCGTTCAAAAGTTCTTGGG 57.563 42.857 0.00 0.00 0.00 4.12
123 124 5.578776 ACTAAAGCGTTCAAAAGTTCTTGG 58.421 37.500 0.00 0.00 0.00 3.61
131 135 6.439675 AGTTACCAACTAAAGCGTTCAAAA 57.560 33.333 0.00 0.00 40.69 2.44
134 138 4.273969 CCAAGTTACCAACTAAAGCGTTCA 59.726 41.667 0.00 0.00 41.91 3.18
173 177 3.447586 TCCATCTTAAGTCCTCAGTTCCG 59.552 47.826 1.63 0.00 0.00 4.30
179 183 4.100653 CAGCTGATCCATCTTAAGTCCTCA 59.899 45.833 8.42 0.15 0.00 3.86
192 196 2.224137 GCTACTACATGCAGCTGATCCA 60.224 50.000 20.43 6.41 32.44 3.41
203 207 4.227538 CGGTAATTCGGAGCTACTACATG 58.772 47.826 0.00 0.00 0.00 3.21
204 208 3.887716 ACGGTAATTCGGAGCTACTACAT 59.112 43.478 0.00 0.00 0.00 2.29
206 210 3.304324 GGACGGTAATTCGGAGCTACTAC 60.304 52.174 0.00 0.00 0.00 2.73
207 211 2.880890 GGACGGTAATTCGGAGCTACTA 59.119 50.000 0.00 0.00 0.00 1.82
208 212 1.680207 GGACGGTAATTCGGAGCTACT 59.320 52.381 0.00 0.00 0.00 2.57
213 217 2.165845 AGAACAGGACGGTAATTCGGAG 59.834 50.000 0.00 0.00 0.00 4.63
217 221 6.373495 ACCATAAAAGAACAGGACGGTAATTC 59.627 38.462 0.00 0.00 0.00 2.17
295 299 1.446016 ACCACCTTTAAGCCCTCAGT 58.554 50.000 0.00 0.00 0.00 3.41
416 420 7.175467 TGTCACTCCGACTACTCAGTAAATAAA 59.825 37.037 0.00 0.00 45.60 1.40
558 1425 7.673926 AGATTTACCACAACAATATTTGGGTCT 59.326 33.333 8.43 4.22 34.12 3.85
595 1462 7.491372 TCAGAAACAGTAGACCGCTAAATTATG 59.509 37.037 0.00 0.00 0.00 1.90
596 1463 7.553334 TCAGAAACAGTAGACCGCTAAATTAT 58.447 34.615 0.00 0.00 0.00 1.28
756 1642 5.761205 TGGGGCAAATATTGAGCTAACTAA 58.239 37.500 11.55 0.00 0.00 2.24
760 1646 3.953612 CACTGGGGCAAATATTGAGCTAA 59.046 43.478 11.55 0.00 0.00 3.09
822 1708 0.100146 GCAAGCAATAGTGGAGCAGC 59.900 55.000 0.00 0.00 0.00 5.25
887 1774 6.956202 AGCATGGGAGATTGAATTAGAAAG 57.044 37.500 0.00 0.00 0.00 2.62
889 1776 6.425735 TGAAGCATGGGAGATTGAATTAGAA 58.574 36.000 0.00 0.00 0.00 2.10
909 1796 5.577835 TGTTCTGTTGGAAATCGTTTGAAG 58.422 37.500 0.00 0.00 35.51 3.02
916 1803 4.776743 CAGTTCTGTTCTGTTGGAAATCG 58.223 43.478 0.00 0.00 35.51 3.34
945 1832 7.920682 TCACTTTTTATTTTTCTGCTGGTTCTC 59.079 33.333 0.00 0.00 0.00 2.87
998 1885 5.711506 TGTTCTGCCAATGTATCTTTCATGT 59.288 36.000 0.00 0.00 0.00 3.21
1015 1902 2.075338 CTTCTTCTCAGGCTGTTCTGC 58.925 52.381 15.27 0.00 34.91 4.26
1040 1927 5.418310 TCTTTTTGGACGAATTCTGTGAC 57.582 39.130 3.52 0.58 0.00 3.67
1055 1942 5.299949 AGCCAATACCTTTTGCTCTTTTTG 58.700 37.500 0.00 0.00 0.00 2.44
1130 2019 5.478332 ACAAAGGCCAGAAAAGGAGATAAAG 59.522 40.000 5.01 0.00 0.00 1.85
1161 2058 7.277098 GGTTTTTCCAGTAAAGTTTTGACTTCC 59.723 37.037 0.00 0.00 35.97 3.46
1308 2209 6.533819 AAATCATGAAACAACAGCACAATG 57.466 33.333 0.00 0.00 0.00 2.82
1355 2256 2.280628 GATGGTCCTGACGGAATTGTC 58.719 52.381 0.00 0.00 42.08 3.18
1452 2353 5.656416 TGGGTAGAAAATAAGAAATGGCAGG 59.344 40.000 0.00 0.00 0.00 4.85
1512 2413 7.989170 TCAGTCTGTAGCATTATTGTCAATGAT 59.011 33.333 8.39 2.60 38.01 2.45
1723 2667 0.178992 TGGGAGGTGCTGTGAAAAGG 60.179 55.000 0.00 0.00 0.00 3.11
1769 2714 9.288576 TGTCATTGTCATAGTTCTCTTCAAAAT 57.711 29.630 0.00 0.00 0.00 1.82
1861 2818 2.093537 TTTGACCATTTGGCCCGTGC 62.094 55.000 0.00 0.00 39.32 5.34
2021 4549 8.971321 CAAAATCACTACCAAATTGTTGAAGAG 58.029 33.333 0.00 0.00 36.83 2.85
2182 4717 4.344679 TCACAGTTCAGAAATTTTGGCCAT 59.655 37.500 6.09 0.00 0.00 4.40
2183 4718 3.703556 TCACAGTTCAGAAATTTTGGCCA 59.296 39.130 0.00 0.00 0.00 5.36
2184 4719 4.320608 TCACAGTTCAGAAATTTTGGCC 57.679 40.909 0.00 0.00 0.00 5.36
2190 4725 9.317936 GGAAAAAGAAATCACAGTTCAGAAATT 57.682 29.630 0.00 0.00 0.00 1.82
2215 4760 8.106247 TGTAAACCAGAAGCATTAAGTTAAGG 57.894 34.615 2.91 2.91 0.00 2.69
2422 4972 9.578439 GAAAAATAGAGAAAGAATGTCAATGGG 57.422 33.333 0.00 0.00 0.00 4.00
2472 5024 6.354938 TGAATCATTCTCTTCCTCCATGAAG 58.645 40.000 0.00 0.00 42.52 3.02
2522 5077 1.078918 CTGACCTCAGATTGGCGCA 60.079 57.895 10.83 0.00 46.59 6.09
2715 5270 6.403878 ACTGTACTATTTGCATCCGTAACTT 58.596 36.000 0.00 0.00 0.00 2.66
2746 5306 5.757850 AGCAAAATAAGCTTCTATTCGGG 57.242 39.130 0.00 0.00 39.87 5.14
2796 5439 0.177141 GTTGCTATGCTACCCCGACA 59.823 55.000 0.00 0.00 0.00 4.35
2800 5443 0.254747 TGGTGTTGCTATGCTACCCC 59.745 55.000 2.22 0.99 33.44 4.95
2808 5457 4.060900 CAGAGCGAATATGGTGTTGCTAT 58.939 43.478 0.00 0.00 31.88 2.97
2843 5492 2.236489 ATATGGTTGGCAGCCTGTTT 57.764 45.000 21.45 6.45 0.00 2.83
2856 5505 4.460382 CACCTTCAGACTGCAAAATATGGT 59.540 41.667 0.00 0.00 0.00 3.55
2928 5577 5.911752 ACATACAGATGTGTTTGGCAAAAA 58.088 33.333 15.29 6.46 44.90 1.94
3005 5740 3.439476 TGACCTCGTTAGCAGTAGAACTC 59.561 47.826 0.00 0.00 0.00 3.01
3006 5741 3.190953 GTGACCTCGTTAGCAGTAGAACT 59.809 47.826 0.00 0.00 0.00 3.01
3007 5742 3.057736 TGTGACCTCGTTAGCAGTAGAAC 60.058 47.826 0.00 0.00 0.00 3.01
3050 5785 5.963176 TGCAAGATGTTTACACATGATGT 57.037 34.783 0.00 2.78 44.22 3.06
3071 5928 7.010697 TGTACTTTACAACACACTCACAATG 57.989 36.000 0.00 0.00 35.38 2.82
3113 5970 1.466360 GCCAGATTTACGCAGCAACAG 60.466 52.381 0.00 0.00 0.00 3.16
3117 5974 0.108567 TACGCCAGATTTACGCAGCA 60.109 50.000 0.00 0.00 0.00 4.41
3123 5980 4.554330 CGTAGGAGAGTACGCCAGATTTAC 60.554 50.000 0.00 0.00 39.40 2.01
3147 6004 1.800655 CGAGTTCTTCGCTGAGGGATG 60.801 57.143 0.00 2.90 43.22 3.51
3181 6038 6.486657 CCTGAAACATTTGGTTCACTCTCTTA 59.513 38.462 6.94 0.00 45.85 2.10
3183 6040 4.823989 CCTGAAACATTTGGTTCACTCTCT 59.176 41.667 6.94 0.00 45.85 3.10
3229 6086 8.615211 CGTCTTGATCTTCATTTTAATGGATCA 58.385 33.333 14.83 14.83 39.80 2.92
3248 6105 3.058155 GTCTCTGTTAGCAGACGTCTTGA 60.058 47.826 17.26 0.42 45.94 3.02
3274 6131 3.311110 GGACGACCTGGTCTGGCA 61.311 66.667 23.49 0.00 37.12 4.92
3276 6133 1.414158 ATATGGACGACCTGGTCTGG 58.586 55.000 23.49 12.14 37.12 3.86
3338 6195 8.681806 TCTTCACACAGTATATTCTCTTCTCTG 58.318 37.037 0.00 0.00 0.00 3.35
3359 6216 0.042535 CGCAGAAAAACGCGTCTTCA 60.043 50.000 26.46 0.00 46.23 3.02
3384 6242 4.774586 CGTCTCGTCACAGTAATCTATCC 58.225 47.826 0.00 0.00 0.00 2.59
3389 6247 2.546195 AGCGTCTCGTCACAGTAATC 57.454 50.000 0.00 0.00 0.00 1.75
3414 6272 2.649975 GGACGCGTCGGTATCACG 60.650 66.667 30.99 0.00 40.35 4.35
3421 6279 1.636988 AAATAAAGAGGACGCGTCGG 58.363 50.000 30.99 0.00 0.00 4.79
3442 6300 8.049721 AGGAGGATTAGGAAAAACATTACAGAG 58.950 37.037 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.