Multiple sequence alignment - TraesCS6B01G361000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G361000 | chr6B | 100.000 | 4093 | 0 | 0 | 1 | 4093 | 632847768 | 632851860 | 0.000000e+00 | 7559.0 |
1 | TraesCS6B01G361000 | chr6B | 97.384 | 344 | 8 | 1 | 3655 | 3998 | 632876867 | 632877209 | 5.900000e-163 | 584.0 |
2 | TraesCS6B01G361000 | chr6B | 78.384 | 458 | 70 | 22 | 3655 | 4093 | 67417933 | 67417486 | 1.880000e-68 | 270.0 |
3 | TraesCS6B01G361000 | chr6D | 93.621 | 2618 | 115 | 21 | 828 | 3410 | 419837155 | 419839755 | 0.000000e+00 | 3862.0 |
4 | TraesCS6B01G361000 | chr6D | 86.757 | 740 | 61 | 16 | 45 | 780 | 419773748 | 419774454 | 0.000000e+00 | 789.0 |
5 | TraesCS6B01G361000 | chr6D | 100.000 | 33 | 0 | 0 | 1579 | 1611 | 419837956 | 419837988 | 1.230000e-05 | 62.1 |
6 | TraesCS6B01G361000 | chr6A | 93.856 | 1481 | 61 | 13 | 1613 | 3089 | 562930752 | 562932206 | 0.000000e+00 | 2204.0 |
7 | TraesCS6B01G361000 | chr6A | 91.310 | 794 | 39 | 7 | 845 | 1612 | 562929996 | 562930785 | 0.000000e+00 | 1057.0 |
8 | TraesCS6B01G361000 | chr6A | 80.102 | 784 | 91 | 33 | 48 | 780 | 562929138 | 562929907 | 1.300000e-144 | 523.0 |
9 | TraesCS6B01G361000 | chr6A | 86.018 | 329 | 32 | 7 | 3327 | 3654 | 562933000 | 562933315 | 1.410000e-89 | 340.0 |
10 | TraesCS6B01G361000 | chr6A | 82.081 | 173 | 20 | 9 | 3688 | 3855 | 88598644 | 88598478 | 1.980000e-28 | 137.0 |
11 | TraesCS6B01G361000 | chr6A | 92.982 | 57 | 4 | 0 | 3264 | 3320 | 562932672 | 562932728 | 2.620000e-12 | 84.2 |
12 | TraesCS6B01G361000 | chr2B | 90.000 | 440 | 41 | 3 | 3655 | 4093 | 438433353 | 438432916 | 2.140000e-157 | 566.0 |
13 | TraesCS6B01G361000 | chr2B | 91.765 | 340 | 26 | 2 | 3655 | 3994 | 438428292 | 438427955 | 4.790000e-129 | 472.0 |
14 | TraesCS6B01G361000 | chr2B | 93.023 | 215 | 14 | 1 | 3655 | 3869 | 477004469 | 477004682 | 3.070000e-81 | 313.0 |
15 | TraesCS6B01G361000 | chr2B | 94.059 | 202 | 12 | 0 | 3654 | 3855 | 477003628 | 477003829 | 1.430000e-79 | 307.0 |
16 | TraesCS6B01G361000 | chr5B | 83.848 | 421 | 56 | 12 | 3678 | 4093 | 106787206 | 106786793 | 1.380000e-104 | 390.0 |
17 | TraesCS6B01G361000 | chr5B | 87.597 | 258 | 25 | 5 | 3841 | 4093 | 112539608 | 112539863 | 4.000000e-75 | 292.0 |
18 | TraesCS6B01G361000 | chr5B | 80.909 | 330 | 45 | 15 | 3676 | 3995 | 112552646 | 112552967 | 1.140000e-60 | 244.0 |
19 | TraesCS6B01G361000 | chr2A | 79.156 | 403 | 60 | 21 | 3699 | 4088 | 492388850 | 492388459 | 1.460000e-64 | 257.0 |
20 | TraesCS6B01G361000 | chr2A | 89.773 | 88 | 9 | 0 | 4001 | 4088 | 87666590 | 87666503 | 3.340000e-21 | 113.0 |
21 | TraesCS6B01G361000 | chr5A | 74.118 | 425 | 86 | 22 | 3676 | 4087 | 23806781 | 23807194 | 1.970000e-33 | 154.0 |
22 | TraesCS6B01G361000 | chr1A | 78.070 | 228 | 40 | 7 | 3650 | 3869 | 482835359 | 482835584 | 7.140000e-28 | 135.0 |
23 | TraesCS6B01G361000 | chr7D | 86.777 | 121 | 14 | 2 | 3974 | 4093 | 556185588 | 556185707 | 2.570000e-27 | 134.0 |
24 | TraesCS6B01G361000 | chr4B | 85.484 | 62 | 5 | 3 | 3997 | 4057 | 193997011 | 193997069 | 1.230000e-05 | 62.1 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS6B01G361000 | chr6B | 632847768 | 632851860 | 4092 | False | 7559.00 | 7559 | 100.0000 | 1 | 4093 | 1 | chr6B.!!$F1 | 4092 |
1 | TraesCS6B01G361000 | chr6D | 419837155 | 419839755 | 2600 | False | 1962.05 | 3862 | 96.8105 | 828 | 3410 | 2 | chr6D.!!$F2 | 2582 |
2 | TraesCS6B01G361000 | chr6D | 419773748 | 419774454 | 706 | False | 789.00 | 789 | 86.7570 | 45 | 780 | 1 | chr6D.!!$F1 | 735 |
3 | TraesCS6B01G361000 | chr6A | 562929138 | 562933315 | 4177 | False | 841.64 | 2204 | 88.8536 | 48 | 3654 | 5 | chr6A.!!$F1 | 3606 |
4 | TraesCS6B01G361000 | chr2B | 477003628 | 477004682 | 1054 | False | 310.00 | 313 | 93.5410 | 3654 | 3869 | 2 | chr2B.!!$F1 | 215 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
622 | 652 | 0.032615 | AGCACCACCTTCACCCAAAA | 60.033 | 50.0 | 0.0 | 0.0 | 0.00 | 2.44 | F |
1494 | 1664 | 0.102300 | TGCGATATGACGACAGTGGG | 59.898 | 55.0 | 0.0 | 0.0 | 35.09 | 4.61 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2559 | 2740 | 0.173708 | GACCTGACTGATCGGTGGTC | 59.826 | 60.0 | 22.00 | 22.00 | 36.14 | 4.02 | R |
3098 | 3282 | 0.041839 | GGCTAATGCGCAACATCGAG | 60.042 | 55.0 | 17.11 | 6.69 | 38.34 | 4.04 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
34 | 35 | 7.552050 | TCATTAAAAAGATGAATGGGGTTGT | 57.448 | 32.000 | 0.00 | 0.00 | 32.52 | 3.32 |
35 | 36 | 7.385267 | TCATTAAAAAGATGAATGGGGTTGTG | 58.615 | 34.615 | 0.00 | 0.00 | 32.52 | 3.33 |
36 | 37 | 4.622260 | AAAAAGATGAATGGGGTTGTGG | 57.378 | 40.909 | 0.00 | 0.00 | 0.00 | 4.17 |
37 | 38 | 2.236489 | AAGATGAATGGGGTTGTGGG | 57.764 | 50.000 | 0.00 | 0.00 | 0.00 | 4.61 |
38 | 39 | 0.336048 | AGATGAATGGGGTTGTGGGG | 59.664 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
39 | 40 | 0.334676 | GATGAATGGGGTTGTGGGGA | 59.665 | 55.000 | 0.00 | 0.00 | 0.00 | 4.81 |
40 | 41 | 1.018031 | ATGAATGGGGTTGTGGGGAT | 58.982 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
41 | 42 | 1.687492 | TGAATGGGGTTGTGGGGATA | 58.313 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
42 | 43 | 2.003830 | TGAATGGGGTTGTGGGGATAA | 58.996 | 47.619 | 0.00 | 0.00 | 0.00 | 1.75 |
43 | 44 | 2.383683 | TGAATGGGGTTGTGGGGATAAA | 59.616 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
44 | 45 | 2.846665 | ATGGGGTTGTGGGGATAAAG | 57.153 | 50.000 | 0.00 | 0.00 | 0.00 | 1.85 |
45 | 46 | 1.761711 | TGGGGTTGTGGGGATAAAGA | 58.238 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
46 | 47 | 2.074579 | TGGGGTTGTGGGGATAAAGAA | 58.925 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
74 | 75 | 5.324409 | TCTTTGTTGCCTAATCACCATTCT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.40 |
271 | 288 | 9.330063 | GTGAATAATATCTTCATGGTCAGACAA | 57.670 | 33.333 | 2.17 | 0.00 | 35.26 | 3.18 |
347 | 364 | 1.680860 | GGCCAATTTAGCTACCACGGT | 60.681 | 52.381 | 0.00 | 0.00 | 0.00 | 4.83 |
363 | 380 | 6.091718 | ACCACGGTAGCAAAATAAATGTTT | 57.908 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
385 | 403 | 0.247185 | TCATGACTGCAGCATCGACA | 59.753 | 50.000 | 15.27 | 5.27 | 0.00 | 4.35 |
423 | 441 | 5.879777 | TCATACGTGATGGATGAACAACAAT | 59.120 | 36.000 | 0.00 | 0.00 | 36.08 | 2.71 |
484 | 502 | 7.588143 | TTTTACAACAAACATGTTCAAGTGG | 57.412 | 32.000 | 12.39 | 10.97 | 32.27 | 4.00 |
571 | 590 | 7.171848 | GGTGTTCCAAAAACTTAACAAACAACT | 59.828 | 33.333 | 0.00 | 0.00 | 33.92 | 3.16 |
602 | 621 | 9.950680 | CGGAGCACATATTTTATTTTCTTACAT | 57.049 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
618 | 648 | 0.328258 | ACATAGCACCACCTTCACCC | 59.672 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
622 | 652 | 0.032615 | AGCACCACCTTCACCCAAAA | 60.033 | 50.000 | 0.00 | 0.00 | 0.00 | 2.44 |
639 | 686 | 9.784531 | TCACCCAAAATTATAAGAATGCAAAAA | 57.215 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
712 | 793 | 8.411991 | TTTTTAGGGGTTATTGTTTACTCAGG | 57.588 | 34.615 | 0.00 | 0.00 | 0.00 | 3.86 |
713 | 794 | 6.707273 | TTAGGGGTTATTGTTTACTCAGGT | 57.293 | 37.500 | 0.00 | 0.00 | 0.00 | 4.00 |
714 | 795 | 4.918588 | AGGGGTTATTGTTTACTCAGGTG | 58.081 | 43.478 | 0.00 | 0.00 | 0.00 | 4.00 |
715 | 796 | 3.442625 | GGGGTTATTGTTTACTCAGGTGC | 59.557 | 47.826 | 0.00 | 0.00 | 0.00 | 5.01 |
780 | 861 | 0.754217 | GCCATCAGCCCATCACACAT | 60.754 | 55.000 | 0.00 | 0.00 | 34.35 | 3.21 |
781 | 862 | 1.771565 | CCATCAGCCCATCACACATT | 58.228 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
782 | 863 | 2.104967 | CCATCAGCCCATCACACATTT | 58.895 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
783 | 864 | 2.100252 | CCATCAGCCCATCACACATTTC | 59.900 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
784 | 865 | 2.885135 | TCAGCCCATCACACATTTCT | 57.115 | 45.000 | 0.00 | 0.00 | 0.00 | 2.52 |
785 | 866 | 2.715046 | TCAGCCCATCACACATTTCTC | 58.285 | 47.619 | 0.00 | 0.00 | 0.00 | 2.87 |
786 | 867 | 2.040145 | TCAGCCCATCACACATTTCTCA | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
787 | 868 | 2.821378 | CAGCCCATCACACATTTCTCAA | 59.179 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
788 | 869 | 3.256383 | CAGCCCATCACACATTTCTCAAA | 59.744 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
789 | 870 | 3.896888 | AGCCCATCACACATTTCTCAAAA | 59.103 | 39.130 | 0.00 | 0.00 | 0.00 | 2.44 |
790 | 871 | 4.344679 | AGCCCATCACACATTTCTCAAAAA | 59.655 | 37.500 | 0.00 | 0.00 | 0.00 | 1.94 |
996 | 1147 | 1.373059 | GGAGATTCCCAGATCGGCC | 59.627 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
1208 | 1359 | 0.390735 | ACCATCGCCGTCAAGGTAAC | 60.391 | 55.000 | 0.00 | 0.00 | 43.70 | 2.50 |
1210 | 1361 | 0.108329 | CATCGCCGTCAAGGTAACCT | 60.108 | 55.000 | 0.00 | 0.00 | 43.70 | 3.50 |
1215 | 1366 | 1.202615 | GCCGTCAAGGTAACCTATCCC | 60.203 | 57.143 | 0.00 | 0.00 | 43.70 | 3.85 |
1216 | 1367 | 2.395619 | CCGTCAAGGTAACCTATCCCT | 58.604 | 52.381 | 0.00 | 0.00 | 31.13 | 4.20 |
1217 | 1368 | 2.102588 | CCGTCAAGGTAACCTATCCCTG | 59.897 | 54.545 | 0.00 | 0.00 | 31.13 | 4.45 |
1218 | 1369 | 2.483188 | CGTCAAGGTAACCTATCCCTGC | 60.483 | 54.545 | 0.00 | 0.00 | 31.13 | 4.85 |
1225 | 1379 | 1.639635 | AACCTATCCCTGCCTGCCTG | 61.640 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1236 | 1390 | 3.449227 | CTGCCTGCCCGTCTCGTA | 61.449 | 66.667 | 0.00 | 0.00 | 0.00 | 3.43 |
1317 | 1484 | 3.853831 | TCAAGTTGATTACGCGGTAGA | 57.146 | 42.857 | 12.47 | 0.00 | 0.00 | 2.59 |
1321 | 1488 | 5.062934 | TCAAGTTGATTACGCGGTAGATTTG | 59.937 | 40.000 | 12.47 | 5.66 | 0.00 | 2.32 |
1324 | 1494 | 2.605818 | TGATTACGCGGTAGATTTGTGC | 59.394 | 45.455 | 12.47 | 0.00 | 0.00 | 4.57 |
1330 | 1500 | 0.457166 | CGGTAGATTTGTGCGTCGGA | 60.457 | 55.000 | 0.00 | 0.00 | 0.00 | 4.55 |
1336 | 1506 | 1.541310 | ATTTGTGCGTCGGAGGGAGA | 61.541 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1340 | 1510 | 3.760035 | GCGTCGGAGGGAGAAGCA | 61.760 | 66.667 | 0.00 | 0.00 | 41.52 | 3.91 |
1343 | 1513 | 1.878656 | CGTCGGAGGGAGAAGCAGTT | 61.879 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1366 | 1536 | 1.152830 | GGTCCTGGTTTTGCTGGGA | 59.847 | 57.895 | 0.00 | 0.00 | 0.00 | 4.37 |
1367 | 1537 | 0.895559 | GGTCCTGGTTTTGCTGGGAG | 60.896 | 60.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1395 | 1565 | 1.103398 | GCCGCAGCACCCAGATTTAT | 61.103 | 55.000 | 0.00 | 0.00 | 39.53 | 1.40 |
1409 | 1579 | 7.124147 | CACCCAGATTTATGGTTAATTGGAACT | 59.876 | 37.037 | 0.00 | 0.00 | 38.81 | 3.01 |
1492 | 1662 | 1.908065 | TGTGCGATATGACGACAGTG | 58.092 | 50.000 | 0.00 | 0.00 | 35.09 | 3.66 |
1494 | 1664 | 0.102300 | TGCGATATGACGACAGTGGG | 59.898 | 55.000 | 0.00 | 0.00 | 35.09 | 4.61 |
1633 | 1803 | 6.593268 | ATGGTCTGATGAGATCACTAGATG | 57.407 | 41.667 | 0.00 | 0.00 | 42.33 | 2.90 |
1683 | 1853 | 4.527038 | TCGGTGATTCCTTCTGTCTAAAGT | 59.473 | 41.667 | 0.00 | 0.00 | 0.00 | 2.66 |
1757 | 1927 | 1.212616 | GATTCGGCTCACAGGATTCG | 58.787 | 55.000 | 0.00 | 0.00 | 0.00 | 3.34 |
1774 | 1944 | 5.946377 | AGGATTCGGAATTTGCTTTTCTACT | 59.054 | 36.000 | 4.47 | 0.00 | 0.00 | 2.57 |
1780 | 1950 | 6.932400 | TCGGAATTTGCTTTTCTACTGACTTA | 59.068 | 34.615 | 0.00 | 0.00 | 0.00 | 2.24 |
1829 | 2001 | 4.076394 | AGGCGCAAAAGGTGACTAATAAA | 58.924 | 39.130 | 10.83 | 0.00 | 45.83 | 1.40 |
2038 | 2210 | 9.398170 | CCATTGTTTGTCACTATAACTGAAAAG | 57.602 | 33.333 | 0.00 | 0.00 | 0.00 | 2.27 |
2259 | 2431 | 7.362802 | GGAATTAGTCCTATAGTCCAACTGT | 57.637 | 40.000 | 0.00 | 0.00 | 43.98 | 3.55 |
2405 | 2585 | 4.501229 | GGTCAATTTGCATTCACAACCTCA | 60.501 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
2462 | 2642 | 2.544721 | AGTGCAGAGAAAGGATCAGGA | 58.455 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
2465 | 2645 | 2.235650 | TGCAGAGAAAGGATCAGGAGTG | 59.764 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2579 | 2760 | 1.258445 | ACCACCGATCAGTCAGGTCC | 61.258 | 60.000 | 0.00 | 0.00 | 35.85 | 4.46 |
2642 | 2823 | 9.887629 | AATTGTGTGCAATATGAATATTTTCCA | 57.112 | 25.926 | 0.00 | 0.00 | 43.89 | 3.53 |
2810 | 2991 | 9.581099 | CTTTTAACTTTCTAAAGCTTTTGGTGA | 57.419 | 29.630 | 18.47 | 8.22 | 39.63 | 4.02 |
2840 | 3021 | 3.311596 | GCGTCCGCTAGAAAATGGTTAAT | 59.688 | 43.478 | 4.10 | 0.00 | 38.26 | 1.40 |
3015 | 3199 | 2.993008 | AGCATCATGTCGCTGGGT | 59.007 | 55.556 | 10.23 | 0.00 | 37.02 | 4.51 |
3089 | 3273 | 7.192852 | TCAGGAAAAAGAAGCTCATCTAGAT | 57.807 | 36.000 | 0.00 | 0.00 | 0.00 | 1.98 |
3096 | 3280 | 5.482163 | AGAAGCTCATCTAGATTAAGCCC | 57.518 | 43.478 | 23.90 | 18.41 | 32.82 | 5.19 |
3098 | 3282 | 2.028567 | AGCTCATCTAGATTAAGCCCGC | 60.029 | 50.000 | 23.90 | 9.21 | 33.43 | 6.13 |
3133 | 3317 | 1.620822 | AGCCCAGATTGTTGTTCACC | 58.379 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3180 | 3621 | 5.568685 | TTCTTCATGTTTGGTTCGAACAA | 57.431 | 34.783 | 28.24 | 16.48 | 40.54 | 2.83 |
3217 | 3658 | 6.039941 | GGAGAACTCATAGCATGTACTGTACT | 59.960 | 42.308 | 17.98 | 1.53 | 0.00 | 2.73 |
3255 | 3696 | 7.337184 | TGATCCATTTTAGCCGTGTTGTATTAA | 59.663 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
3256 | 3697 | 7.633193 | TCCATTTTAGCCGTGTTGTATTAAT | 57.367 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
3258 | 3699 | 7.337184 | TCCATTTTAGCCGTGTTGTATTAATGA | 59.663 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
3320 | 3801 | 8.450578 | TGTCCATCTTTTGTATCATTGATACC | 57.549 | 34.615 | 26.38 | 13.77 | 42.81 | 2.73 |
3352 | 4098 | 1.323271 | ATGATGACCAGTCGGCGACT | 61.323 | 55.000 | 34.91 | 34.91 | 44.44 | 4.18 |
3405 | 4151 | 5.107337 | GCGTACTGGTACCTCTTTAACAAAC | 60.107 | 44.000 | 14.36 | 0.00 | 32.61 | 2.93 |
3424 | 4170 | 5.880332 | ACAAACTGTATTAATCGGTGATGCT | 59.120 | 36.000 | 0.00 | 0.00 | 0.00 | 3.79 |
3427 | 4173 | 4.811024 | ACTGTATTAATCGGTGATGCTGTG | 59.189 | 41.667 | 0.00 | 0.00 | 0.00 | 3.66 |
3493 | 4239 | 4.598062 | GGCCAAATACGAGTAAGCATTTC | 58.402 | 43.478 | 0.00 | 0.00 | 0.00 | 2.17 |
3495 | 4241 | 5.266242 | GCCAAATACGAGTAAGCATTTCAG | 58.734 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3538 | 4285 | 5.469373 | TCTTGTTATTCGCATGATGTCAC | 57.531 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
3540 | 4287 | 3.872696 | TGTTATTCGCATGATGTCACCT | 58.127 | 40.909 | 0.00 | 0.00 | 0.00 | 4.00 |
3561 | 4308 | 7.546667 | TCACCTTGTACGTTTATGGTAATCTTC | 59.453 | 37.037 | 0.00 | 0.00 | 0.00 | 2.87 |
3601 | 4348 | 2.717580 | TGCTTCATTCTGCTTGCTTG | 57.282 | 45.000 | 0.00 | 0.00 | 0.00 | 4.01 |
3606 | 4353 | 4.795308 | GCTTCATTCTGCTTGCTTGTTTCT | 60.795 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
3608 | 4355 | 5.618056 | TCATTCTGCTTGCTTGTTTCTAG | 57.382 | 39.130 | 0.00 | 0.00 | 0.00 | 2.43 |
3636 | 4383 | 1.371183 | CTTTCCGACTCCACAGGCA | 59.629 | 57.895 | 0.00 | 0.00 | 0.00 | 4.75 |
3647 | 4394 | 4.985538 | ACTCCACAGGCAAAGATAAGAAA | 58.014 | 39.130 | 0.00 | 0.00 | 0.00 | 2.52 |
3648 | 4395 | 5.574188 | ACTCCACAGGCAAAGATAAGAAAT | 58.426 | 37.500 | 0.00 | 0.00 | 0.00 | 2.17 |
3649 | 4396 | 5.416952 | ACTCCACAGGCAAAGATAAGAAATG | 59.583 | 40.000 | 0.00 | 0.00 | 0.00 | 2.32 |
3650 | 4397 | 5.324409 | TCCACAGGCAAAGATAAGAAATGT | 58.676 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
3651 | 4398 | 5.183713 | TCCACAGGCAAAGATAAGAAATGTG | 59.816 | 40.000 | 0.00 | 0.00 | 36.23 | 3.21 |
3652 | 4399 | 5.183713 | CCACAGGCAAAGATAAGAAATGTGA | 59.816 | 40.000 | 0.00 | 0.00 | 38.16 | 3.58 |
3667 | 4414 | 3.680786 | TGAGTGTCAGCGTCCCCG | 61.681 | 66.667 | 0.00 | 0.00 | 37.07 | 5.73 |
3723 | 4470 | 4.193334 | TCGCAGGACTCGCCGATG | 62.193 | 66.667 | 0.00 | 0.00 | 43.43 | 3.84 |
3816 | 4563 | 1.111116 | TACCCGCAGCGCCTACTTAT | 61.111 | 55.000 | 10.07 | 0.00 | 0.00 | 1.73 |
3820 | 4567 | 1.825285 | CGCAGCGCCTACTTATGCAG | 61.825 | 60.000 | 14.68 | 5.07 | 36.70 | 4.41 |
3829 | 4576 | 0.529773 | TACTTATGCAGCCTTCCGCG | 60.530 | 55.000 | 0.00 | 0.00 | 44.76 | 6.46 |
3861 | 4608 | 1.211212 | CATCCAGTGGATCAGAAGGCA | 59.789 | 52.381 | 22.36 | 0.00 | 40.98 | 4.75 |
3862 | 4609 | 0.615331 | TCCAGTGGATCAGAAGGCAC | 59.385 | 55.000 | 8.12 | 0.00 | 0.00 | 5.01 |
3864 | 4611 | 0.742281 | CAGTGGATCAGAAGGCACGG | 60.742 | 60.000 | 0.00 | 0.00 | 0.00 | 4.94 |
3865 | 4612 | 2.109126 | GTGGATCAGAAGGCACGGC | 61.109 | 63.158 | 0.00 | 0.00 | 0.00 | 5.68 |
3867 | 4614 | 2.892425 | GATCAGAAGGCACGGCGG | 60.892 | 66.667 | 13.24 | 0.66 | 0.00 | 6.13 |
3882 | 4629 | 4.109675 | CGGCACCGATCCCCCTTT | 62.110 | 66.667 | 2.01 | 0.00 | 42.83 | 3.11 |
3883 | 4630 | 2.124278 | GGCACCGATCCCCCTTTC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 2.62 |
3884 | 4631 | 2.124278 | GCACCGATCCCCCTTTCC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 3.13 |
3885 | 4632 | 2.595655 | CACCGATCCCCCTTTCCC | 59.404 | 66.667 | 0.00 | 0.00 | 0.00 | 3.97 |
3886 | 4633 | 2.694992 | ACCGATCCCCCTTTCCCC | 60.695 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
3887 | 4634 | 2.368329 | CCGATCCCCCTTTCCCCT | 60.368 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3888 | 4635 | 2.452937 | CCGATCCCCCTTTCCCCTC | 61.453 | 68.421 | 0.00 | 0.00 | 0.00 | 4.30 |
3889 | 4636 | 1.384643 | CGATCCCCCTTTCCCCTCT | 60.385 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
3890 | 4637 | 1.411651 | CGATCCCCCTTTCCCCTCTC | 61.412 | 65.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3891 | 4638 | 1.384643 | ATCCCCCTTTCCCCTCTCG | 60.385 | 63.158 | 0.00 | 0.00 | 0.00 | 4.04 |
3892 | 4639 | 3.798511 | CCCCCTTTCCCCTCTCGC | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 5.03 |
3893 | 4640 | 2.689034 | CCCCTTTCCCCTCTCGCT | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 4.93 |
3908 | 4655 | 2.025155 | CTCGCTCAAGAACCCTAGCTA | 58.975 | 52.381 | 0.00 | 0.00 | 32.73 | 3.32 |
3911 | 4658 | 1.831736 | GCTCAAGAACCCTAGCTACCA | 59.168 | 52.381 | 0.00 | 0.00 | 32.18 | 3.25 |
3913 | 4660 | 3.118223 | GCTCAAGAACCCTAGCTACCAAT | 60.118 | 47.826 | 0.00 | 0.00 | 32.18 | 3.16 |
3914 | 4661 | 4.698575 | CTCAAGAACCCTAGCTACCAATC | 58.301 | 47.826 | 0.00 | 0.00 | 0.00 | 2.67 |
3915 | 4662 | 3.454812 | TCAAGAACCCTAGCTACCAATCC | 59.545 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
3916 | 4663 | 2.409570 | AGAACCCTAGCTACCAATCCC | 58.590 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
3917 | 4664 | 1.420514 | GAACCCTAGCTACCAATCCCC | 59.579 | 57.143 | 0.00 | 0.00 | 0.00 | 4.81 |
3928 | 4727 | 2.718563 | ACCAATCCCCAATTCGTGTAC | 58.281 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
3929 | 4728 | 2.307686 | ACCAATCCCCAATTCGTGTACT | 59.692 | 45.455 | 0.00 | 0.00 | 0.00 | 2.73 |
3931 | 4730 | 3.370527 | CCAATCCCCAATTCGTGTACTCT | 60.371 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
3932 | 4731 | 3.821421 | ATCCCCAATTCGTGTACTCTC | 57.179 | 47.619 | 0.00 | 0.00 | 0.00 | 3.20 |
3933 | 4732 | 2.816411 | TCCCCAATTCGTGTACTCTCT | 58.184 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
3934 | 4733 | 2.496070 | TCCCCAATTCGTGTACTCTCTG | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 3.35 |
3935 | 4734 | 2.233922 | CCCCAATTCGTGTACTCTCTGT | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3937 | 4736 | 4.081862 | CCCCAATTCGTGTACTCTCTGTAA | 60.082 | 45.833 | 0.00 | 0.00 | 32.25 | 2.41 |
3940 | 4739 | 5.573282 | CCAATTCGTGTACTCTCTGTAACTG | 59.427 | 44.000 | 0.00 | 0.00 | 32.25 | 3.16 |
3941 | 4740 | 6.379386 | CAATTCGTGTACTCTCTGTAACTGA | 58.621 | 40.000 | 0.00 | 0.00 | 32.25 | 3.41 |
3946 | 4745 | 6.206048 | TCGTGTACTCTCTGTAACTGATTGAA | 59.794 | 38.462 | 0.00 | 0.00 | 32.25 | 2.69 |
3947 | 4746 | 6.305877 | CGTGTACTCTCTGTAACTGATTGAAC | 59.694 | 42.308 | 0.00 | 0.00 | 32.25 | 3.18 |
3948 | 4747 | 6.586844 | GTGTACTCTCTGTAACTGATTGAACC | 59.413 | 42.308 | 0.00 | 0.00 | 32.25 | 3.62 |
3949 | 4748 | 6.493802 | TGTACTCTCTGTAACTGATTGAACCT | 59.506 | 38.462 | 0.00 | 0.00 | 32.25 | 3.50 |
3951 | 4750 | 6.226787 | ACTCTCTGTAACTGATTGAACCTTG | 58.773 | 40.000 | 0.00 | 0.00 | 0.00 | 3.61 |
3952 | 4751 | 6.042093 | ACTCTCTGTAACTGATTGAACCTTGA | 59.958 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3953 | 4752 | 7.009179 | TCTCTGTAACTGATTGAACCTTGAT | 57.991 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3954 | 4753 | 8.134202 | TCTCTGTAACTGATTGAACCTTGATA | 57.866 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
3955 | 4754 | 8.593679 | TCTCTGTAACTGATTGAACCTTGATAA | 58.406 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3956 | 4755 | 9.388506 | CTCTGTAACTGATTGAACCTTGATAAT | 57.611 | 33.333 | 0.00 | 0.00 | 0.00 | 1.28 |
3957 | 4756 | 9.383519 | TCTGTAACTGATTGAACCTTGATAATC | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
3958 | 4757 | 8.506168 | TGTAACTGATTGAACCTTGATAATCC | 57.494 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3959 | 4758 | 8.328758 | TGTAACTGATTGAACCTTGATAATCCT | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 3.24 |
3960 | 4759 | 7.872113 | AACTGATTGAACCTTGATAATCCTC | 57.128 | 36.000 | 0.00 | 0.00 | 0.00 | 3.71 |
3961 | 4760 | 6.360618 | ACTGATTGAACCTTGATAATCCTCC | 58.639 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
3962 | 4761 | 6.159398 | ACTGATTGAACCTTGATAATCCTCCT | 59.841 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
3963 | 4762 | 6.973642 | TGATTGAACCTTGATAATCCTCCTT | 58.026 | 36.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3964 | 4763 | 7.056635 | TGATTGAACCTTGATAATCCTCCTTC | 58.943 | 38.462 | 0.00 | 0.00 | 0.00 | 3.46 |
3965 | 4764 | 6.642733 | TTGAACCTTGATAATCCTCCTTCT | 57.357 | 37.500 | 0.00 | 0.00 | 0.00 | 2.85 |
3966 | 4765 | 5.994250 | TGAACCTTGATAATCCTCCTTCTG | 58.006 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3967 | 4766 | 4.429854 | ACCTTGATAATCCTCCTTCTGC | 57.570 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
3968 | 4767 | 4.043596 | ACCTTGATAATCCTCCTTCTGCT | 58.956 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
3969 | 4768 | 5.219739 | ACCTTGATAATCCTCCTTCTGCTA | 58.780 | 41.667 | 0.00 | 0.00 | 0.00 | 3.49 |
3970 | 4769 | 5.848921 | ACCTTGATAATCCTCCTTCTGCTAT | 59.151 | 40.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3971 | 4770 | 7.019388 | ACCTTGATAATCCTCCTTCTGCTATA | 58.981 | 38.462 | 0.00 | 0.00 | 0.00 | 1.31 |
3972 | 4771 | 7.038658 | ACCTTGATAATCCTCCTTCTGCTATAC | 60.039 | 40.741 | 0.00 | 0.00 | 0.00 | 1.47 |
3973 | 4772 | 7.038729 | CCTTGATAATCCTCCTTCTGCTATACA | 60.039 | 40.741 | 0.00 | 0.00 | 0.00 | 2.29 |
3974 | 4773 | 7.855784 | TGATAATCCTCCTTCTGCTATACAA | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3978 | 4777 | 3.574396 | TCCTCCTTCTGCTATACAATCCG | 59.426 | 47.826 | 0.00 | 0.00 | 0.00 | 4.18 |
3983 | 4782 | 4.499183 | CTTCTGCTATACAATCCGATCCC | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
3985 | 4784 | 3.511540 | TCTGCTATACAATCCGATCCCTG | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 4.45 |
3987 | 4786 | 2.234908 | GCTATACAATCCGATCCCTGCT | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4005 | 4804 | 3.086282 | TGCTCTTACACGTGGTATCAGA | 58.914 | 45.455 | 21.57 | 11.60 | 0.00 | 3.27 |
4006 | 4805 | 3.128764 | TGCTCTTACACGTGGTATCAGAG | 59.871 | 47.826 | 21.57 | 20.15 | 38.87 | 3.35 |
4007 | 4806 | 3.377485 | GCTCTTACACGTGGTATCAGAGA | 59.623 | 47.826 | 24.22 | 14.33 | 38.44 | 3.10 |
4008 | 4807 | 4.731193 | GCTCTTACACGTGGTATCAGAGAC | 60.731 | 50.000 | 24.22 | 16.07 | 38.44 | 3.36 |
4009 | 4808 | 3.693085 | TCTTACACGTGGTATCAGAGACC | 59.307 | 47.826 | 21.57 | 7.34 | 37.49 | 3.85 |
4010 | 4809 | 1.919240 | ACACGTGGTATCAGAGACCA | 58.081 | 50.000 | 21.57 | 13.23 | 44.86 | 4.02 |
4015 | 4814 | 2.919772 | TGGTATCAGAGACCACTCCA | 57.080 | 50.000 | 13.23 | 0.00 | 42.15 | 3.86 |
4016 | 4815 | 2.457598 | TGGTATCAGAGACCACTCCAC | 58.542 | 52.381 | 13.23 | 0.00 | 42.15 | 4.02 |
4018 | 4817 | 2.624557 | GGTATCAGAGACCACTCCACCT | 60.625 | 54.545 | 9.53 | 0.00 | 43.53 | 4.00 |
4019 | 4818 | 1.859302 | ATCAGAGACCACTCCACCTC | 58.141 | 55.000 | 0.00 | 0.00 | 43.53 | 3.85 |
4020 | 4819 | 0.251832 | TCAGAGACCACTCCACCTCC | 60.252 | 60.000 | 0.00 | 0.00 | 43.53 | 4.30 |
4023 | 4822 | 0.545548 | GAGACCACTCCACCTCCCTT | 60.546 | 60.000 | 0.00 | 0.00 | 37.19 | 3.95 |
4024 | 4823 | 0.545548 | AGACCACTCCACCTCCCTTC | 60.546 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4025 | 4824 | 0.545548 | GACCACTCCACCTCCCTTCT | 60.546 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4026 | 4825 | 0.104409 | ACCACTCCACCTCCCTTCTT | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 2.52 |
4027 | 4826 | 0.615850 | CCACTCCACCTCCCTTCTTC | 59.384 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
4028 | 4827 | 1.650528 | CACTCCACCTCCCTTCTTCT | 58.349 | 55.000 | 0.00 | 0.00 | 0.00 | 2.85 |
4029 | 4828 | 1.552792 | CACTCCACCTCCCTTCTTCTC | 59.447 | 57.143 | 0.00 | 0.00 | 0.00 | 2.87 |
4030 | 4829 | 1.199615 | CTCCACCTCCCTTCTTCTCC | 58.800 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
4031 | 4830 | 0.614979 | TCCACCTCCCTTCTTCTCCG | 60.615 | 60.000 | 0.00 | 0.00 | 0.00 | 4.63 |
4032 | 4831 | 1.219393 | CACCTCCCTTCTTCTCCGC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 5.54 |
4033 | 4832 | 1.990614 | ACCTCCCTTCTTCTCCGCC | 60.991 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
4035 | 4834 | 1.219393 | CTCCCTTCTTCTCCGCCAC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 5.01 |
4036 | 4835 | 1.229209 | TCCCTTCTTCTCCGCCACT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.00 |
4037 | 4836 | 1.219393 | CCCTTCTTCTCCGCCACTC | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
4038 | 4837 | 1.261238 | CCCTTCTTCTCCGCCACTCT | 61.261 | 60.000 | 0.00 | 0.00 | 0.00 | 3.24 |
4039 | 4838 | 0.108424 | CCTTCTTCTCCGCCACTCTG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4049 | 4848 | 3.909662 | CCACTCTGGCCCAAATCG | 58.090 | 61.111 | 0.00 | 0.00 | 0.00 | 3.34 |
4050 | 4849 | 1.002134 | CCACTCTGGCCCAAATCGT | 60.002 | 57.895 | 0.00 | 0.00 | 0.00 | 3.73 |
4051 | 4850 | 1.026718 | CCACTCTGGCCCAAATCGTC | 61.027 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
4053 | 4852 | 1.218047 | CTCTGGCCCAAATCGTCGA | 59.782 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
4054 | 4853 | 0.807667 | CTCTGGCCCAAATCGTCGAG | 60.808 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
4055 | 4854 | 1.218047 | CTGGCCCAAATCGTCGAGA | 59.782 | 57.895 | 0.00 | 0.00 | 0.00 | 4.04 |
4056 | 4855 | 1.079405 | TGGCCCAAATCGTCGAGAC | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 3.36 |
4057 | 4856 | 1.218316 | GGCCCAAATCGTCGAGACT | 59.782 | 57.895 | 0.00 | 0.00 | 0.00 | 3.24 |
4060 | 4859 | 0.525668 | CCCAAATCGTCGAGACTCGG | 60.526 | 60.000 | 23.92 | 9.72 | 40.88 | 4.63 |
4061 | 4860 | 1.140407 | CCAAATCGTCGAGACTCGGC | 61.140 | 60.000 | 23.92 | 21.73 | 41.75 | 5.54 |
4091 | 4890 | 4.624293 | CGAGATCGCAGCTGGTAG | 57.376 | 61.111 | 17.12 | 0.00 | 0.00 | 3.18 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
4 | 5 | 9.669887 | CCCCATTCATCTTTTTAATGAATCAAA | 57.330 | 29.630 | 8.06 | 0.00 | 46.03 | 2.69 |
5 | 6 | 8.824783 | ACCCCATTCATCTTTTTAATGAATCAA | 58.175 | 29.630 | 8.06 | 0.00 | 46.03 | 2.57 |
6 | 7 | 8.378115 | ACCCCATTCATCTTTTTAATGAATCA | 57.622 | 30.769 | 8.06 | 0.00 | 46.03 | 2.57 |
7 | 8 | 9.101655 | CAACCCCATTCATCTTTTTAATGAATC | 57.898 | 33.333 | 8.06 | 0.00 | 46.03 | 2.52 |
9 | 10 | 7.877097 | CACAACCCCATTCATCTTTTTAATGAA | 59.123 | 33.333 | 1.43 | 1.43 | 44.72 | 2.57 |
10 | 11 | 7.385267 | CACAACCCCATTCATCTTTTTAATGA | 58.615 | 34.615 | 0.00 | 0.00 | 33.38 | 2.57 |
11 | 12 | 6.594937 | CCACAACCCCATTCATCTTTTTAATG | 59.405 | 38.462 | 0.00 | 0.00 | 0.00 | 1.90 |
12 | 13 | 6.296374 | CCCACAACCCCATTCATCTTTTTAAT | 60.296 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
13 | 14 | 5.012561 | CCCACAACCCCATTCATCTTTTTAA | 59.987 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
14 | 15 | 4.530161 | CCCACAACCCCATTCATCTTTTTA | 59.470 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
15 | 16 | 3.327464 | CCCACAACCCCATTCATCTTTTT | 59.673 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
16 | 17 | 2.905736 | CCCACAACCCCATTCATCTTTT | 59.094 | 45.455 | 0.00 | 0.00 | 0.00 | 2.27 |
17 | 18 | 2.539302 | CCCACAACCCCATTCATCTTT | 58.461 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
18 | 19 | 1.273211 | CCCCACAACCCCATTCATCTT | 60.273 | 52.381 | 0.00 | 0.00 | 0.00 | 2.40 |
19 | 20 | 0.336048 | CCCCACAACCCCATTCATCT | 59.664 | 55.000 | 0.00 | 0.00 | 0.00 | 2.90 |
20 | 21 | 0.334676 | TCCCCACAACCCCATTCATC | 59.665 | 55.000 | 0.00 | 0.00 | 0.00 | 2.92 |
21 | 22 | 1.018031 | ATCCCCACAACCCCATTCAT | 58.982 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
22 | 23 | 1.687492 | TATCCCCACAACCCCATTCA | 58.313 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
23 | 24 | 2.838637 | TTATCCCCACAACCCCATTC | 57.161 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
24 | 25 | 2.657459 | TCTTTATCCCCACAACCCCATT | 59.343 | 45.455 | 0.00 | 0.00 | 0.00 | 3.16 |
25 | 26 | 2.293246 | TCTTTATCCCCACAACCCCAT | 58.707 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
26 | 27 | 1.761711 | TCTTTATCCCCACAACCCCA | 58.238 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
27 | 28 | 2.911552 | TTCTTTATCCCCACAACCCC | 57.088 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
28 | 29 | 7.699878 | AGATATATTCTTTATCCCCACAACCC | 58.300 | 38.462 | 0.00 | 0.00 | 0.00 | 4.11 |
43 | 44 | 9.289782 | GGTGATTAGGCAACAAAGATATATTCT | 57.710 | 33.333 | 0.00 | 0.00 | 41.41 | 2.40 |
44 | 45 | 9.066892 | TGGTGATTAGGCAACAAAGATATATTC | 57.933 | 33.333 | 0.00 | 0.00 | 41.41 | 1.75 |
45 | 46 | 8.995027 | TGGTGATTAGGCAACAAAGATATATT | 57.005 | 30.769 | 0.00 | 0.00 | 41.41 | 1.28 |
46 | 47 | 9.592196 | AATGGTGATTAGGCAACAAAGATATAT | 57.408 | 29.630 | 0.00 | 0.00 | 39.23 | 0.86 |
60 | 61 | 5.483685 | TCCGGAATAGAATGGTGATTAGG | 57.516 | 43.478 | 0.00 | 0.00 | 0.00 | 2.69 |
119 | 120 | 5.965033 | TGGAAGCATTTAAGAGAGAGGAT | 57.035 | 39.130 | 0.00 | 0.00 | 0.00 | 3.24 |
240 | 257 | 9.423061 | TGACCATGAAGATATTATTCACATACG | 57.577 | 33.333 | 0.00 | 0.00 | 39.36 | 3.06 |
363 | 380 | 2.160219 | GTCGATGCTGCAGTCATGAAAA | 59.840 | 45.455 | 22.74 | 7.44 | 0.00 | 2.29 |
371 | 389 | 0.742281 | GGTGATGTCGATGCTGCAGT | 60.742 | 55.000 | 16.64 | 0.00 | 0.00 | 4.40 |
385 | 403 | 2.497675 | ACGTATGACTCAAGCTGGTGAT | 59.502 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
510 | 528 | 6.370718 | TCAGAGTGTCATGAATGTCATTTCAG | 59.629 | 38.462 | 0.00 | 0.00 | 38.90 | 3.02 |
567 | 586 | 8.687824 | ATAAAATATGTGCTCCGAAAAAGTTG | 57.312 | 30.769 | 0.00 | 0.00 | 0.00 | 3.16 |
571 | 590 | 9.921637 | AGAAAATAAAATATGTGCTCCGAAAAA | 57.078 | 25.926 | 0.00 | 0.00 | 0.00 | 1.94 |
602 | 621 | 0.847373 | TTTGGGTGAAGGTGGTGCTA | 59.153 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
701 | 782 | 0.679505 | AGCTCGCACCTGAGTAAACA | 59.320 | 50.000 | 0.00 | 0.00 | 38.28 | 2.83 |
702 | 783 | 2.649331 | TAGCTCGCACCTGAGTAAAC | 57.351 | 50.000 | 0.00 | 0.00 | 38.28 | 2.01 |
703 | 784 | 3.671008 | TTTAGCTCGCACCTGAGTAAA | 57.329 | 42.857 | 0.00 | 0.00 | 38.28 | 2.01 |
704 | 785 | 3.006537 | AGTTTTAGCTCGCACCTGAGTAA | 59.993 | 43.478 | 0.00 | 0.00 | 38.28 | 2.24 |
705 | 786 | 2.561419 | AGTTTTAGCTCGCACCTGAGTA | 59.439 | 45.455 | 0.00 | 0.00 | 38.28 | 2.59 |
706 | 787 | 1.344763 | AGTTTTAGCTCGCACCTGAGT | 59.655 | 47.619 | 0.00 | 0.00 | 38.28 | 3.41 |
707 | 788 | 1.996191 | GAGTTTTAGCTCGCACCTGAG | 59.004 | 52.381 | 0.00 | 0.00 | 39.05 | 3.35 |
708 | 789 | 1.337823 | GGAGTTTTAGCTCGCACCTGA | 60.338 | 52.381 | 0.00 | 0.00 | 36.41 | 3.86 |
709 | 790 | 1.079503 | GGAGTTTTAGCTCGCACCTG | 58.920 | 55.000 | 0.00 | 0.00 | 36.41 | 4.00 |
710 | 791 | 0.036294 | GGGAGTTTTAGCTCGCACCT | 60.036 | 55.000 | 0.00 | 0.00 | 44.62 | 4.00 |
711 | 792 | 0.036294 | AGGGAGTTTTAGCTCGCACC | 60.036 | 55.000 | 11.95 | 0.00 | 46.71 | 5.01 |
712 | 793 | 1.079503 | CAGGGAGTTTTAGCTCGCAC | 58.920 | 55.000 | 11.95 | 0.00 | 46.71 | 5.34 |
713 | 794 | 0.685097 | ACAGGGAGTTTTAGCTCGCA | 59.315 | 50.000 | 11.95 | 0.00 | 46.71 | 5.10 |
714 | 795 | 1.360820 | GACAGGGAGTTTTAGCTCGC | 58.639 | 55.000 | 0.00 | 3.04 | 45.29 | 5.03 |
715 | 796 | 1.405661 | GGGACAGGGAGTTTTAGCTCG | 60.406 | 57.143 | 0.00 | 0.00 | 36.41 | 5.03 |
794 | 875 | 2.228822 | GTCGTGTGATGGGCTGATTTTT | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 1.94 |
795 | 876 | 1.812571 | GTCGTGTGATGGGCTGATTTT | 59.187 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
796 | 877 | 1.453155 | GTCGTGTGATGGGCTGATTT | 58.547 | 50.000 | 0.00 | 0.00 | 0.00 | 2.17 |
797 | 878 | 0.392998 | GGTCGTGTGATGGGCTGATT | 60.393 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
798 | 879 | 1.221840 | GGTCGTGTGATGGGCTGAT | 59.778 | 57.895 | 0.00 | 0.00 | 0.00 | 2.90 |
799 | 880 | 2.171209 | CTGGTCGTGTGATGGGCTGA | 62.171 | 60.000 | 0.00 | 0.00 | 0.00 | 4.26 |
800 | 881 | 1.742880 | CTGGTCGTGTGATGGGCTG | 60.743 | 63.158 | 0.00 | 0.00 | 0.00 | 4.85 |
801 | 882 | 1.913262 | TCTGGTCGTGTGATGGGCT | 60.913 | 57.895 | 0.00 | 0.00 | 0.00 | 5.19 |
802 | 883 | 1.741770 | GTCTGGTCGTGTGATGGGC | 60.742 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
803 | 884 | 1.135083 | GTAGTCTGGTCGTGTGATGGG | 60.135 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
804 | 885 | 1.819288 | AGTAGTCTGGTCGTGTGATGG | 59.181 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
805 | 886 | 3.057526 | TGAAGTAGTCTGGTCGTGTGATG | 60.058 | 47.826 | 0.00 | 0.00 | 0.00 | 3.07 |
806 | 887 | 3.057456 | GTGAAGTAGTCTGGTCGTGTGAT | 60.057 | 47.826 | 0.00 | 0.00 | 0.00 | 3.06 |
807 | 888 | 2.292569 | GTGAAGTAGTCTGGTCGTGTGA | 59.707 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
808 | 889 | 2.293677 | AGTGAAGTAGTCTGGTCGTGTG | 59.706 | 50.000 | 0.00 | 0.00 | 0.00 | 3.82 |
809 | 890 | 2.584236 | AGTGAAGTAGTCTGGTCGTGT | 58.416 | 47.619 | 0.00 | 0.00 | 0.00 | 4.49 |
810 | 891 | 3.309388 | CAAGTGAAGTAGTCTGGTCGTG | 58.691 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
811 | 892 | 2.288273 | GCAAGTGAAGTAGTCTGGTCGT | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
812 | 893 | 2.288213 | TGCAAGTGAAGTAGTCTGGTCG | 60.288 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
813 | 894 | 3.060602 | GTGCAAGTGAAGTAGTCTGGTC | 58.939 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1208 | 1359 | 2.834688 | CAGGCAGGCAGGGATAGG | 59.165 | 66.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1210 | 1361 | 3.492353 | GGCAGGCAGGCAGGGATA | 61.492 | 66.667 | 0.00 | 0.00 | 43.51 | 2.59 |
1225 | 1379 | 0.310232 | GTATGGAGTACGAGACGGGC | 59.690 | 60.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1236 | 1390 | 7.040062 | GCACAGTAGAATCTATCTGTATGGAGT | 60.040 | 40.741 | 18.21 | 0.98 | 39.30 | 3.85 |
1317 | 1484 | 1.079127 | CTCCCTCCGACGCACAAAT | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 2.32 |
1321 | 1488 | 2.182030 | CTTCTCCCTCCGACGCAC | 59.818 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1324 | 1494 | 1.878656 | AACTGCTTCTCCCTCCGACG | 61.879 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
1330 | 1500 | 2.835156 | GACCTCTAAACTGCTTCTCCCT | 59.165 | 50.000 | 0.00 | 0.00 | 0.00 | 4.20 |
1336 | 1506 | 2.339769 | ACCAGGACCTCTAAACTGCTT | 58.660 | 47.619 | 0.00 | 0.00 | 0.00 | 3.91 |
1340 | 1510 | 3.138468 | AGCAAAACCAGGACCTCTAAACT | 59.862 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
1343 | 1513 | 2.224769 | CCAGCAAAACCAGGACCTCTAA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1386 | 1556 | 7.341769 | TCCAGTTCCAATTAACCATAAATCTGG | 59.658 | 37.037 | 0.00 | 0.00 | 42.35 | 3.86 |
1395 | 1565 | 3.806949 | AGCTCCAGTTCCAATTAACCA | 57.193 | 42.857 | 0.00 | 0.00 | 0.00 | 3.67 |
1409 | 1579 | 3.429410 | CGACATCATTCACACTAGCTCCA | 60.429 | 47.826 | 0.00 | 0.00 | 0.00 | 3.86 |
1492 | 1662 | 8.547173 | AGATATTCTAGAACCATCATTCATCCC | 58.453 | 37.037 | 22.07 | 2.84 | 0.00 | 3.85 |
1494 | 1664 | 9.381033 | CCAGATATTCTAGAACCATCATTCATC | 57.619 | 37.037 | 22.07 | 9.79 | 0.00 | 2.92 |
1548 | 1718 | 1.665161 | CGCGTCACCGACTTAAAGAGT | 60.665 | 52.381 | 0.00 | 0.00 | 42.70 | 3.24 |
1683 | 1853 | 2.584835 | CTGGAAGGAAACCACCATGA | 57.415 | 50.000 | 0.00 | 0.00 | 33.53 | 3.07 |
1757 | 1927 | 9.914131 | AAATAAGTCAGTAGAAAAGCAAATTCC | 57.086 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
1780 | 1950 | 9.312904 | CACACCCATGGGATCTTATAAATAAAT | 57.687 | 33.333 | 38.07 | 5.59 | 38.96 | 1.40 |
1812 | 1982 | 8.586273 | CGATGCATTTTTATTAGTCACCTTTTG | 58.414 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
2200 | 2372 | 2.892215 | TGCAAATTGTCTTGATGAGGCA | 59.108 | 40.909 | 0.00 | 0.00 | 38.47 | 4.75 |
2201 | 2373 | 3.057033 | ACTGCAAATTGTCTTGATGAGGC | 60.057 | 43.478 | 0.00 | 0.00 | 0.00 | 4.70 |
2257 | 2429 | 5.299028 | TCAAGCAAATTCTTAAGCTCACACA | 59.701 | 36.000 | 0.00 | 0.00 | 36.07 | 3.72 |
2259 | 2431 | 6.579666 | ATCAAGCAAATTCTTAAGCTCACA | 57.420 | 33.333 | 0.00 | 0.00 | 36.07 | 3.58 |
2426 | 2606 | 4.651045 | TCTGCACTATCTATCCAGAAGCAA | 59.349 | 41.667 | 0.00 | 0.00 | 33.50 | 3.91 |
2462 | 2642 | 8.352942 | GTTTTCCAATCAAGATTTACAGACACT | 58.647 | 33.333 | 0.00 | 0.00 | 0.00 | 3.55 |
2465 | 2645 | 7.809806 | CCAGTTTTCCAATCAAGATTTACAGAC | 59.190 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
2559 | 2740 | 0.173708 | GACCTGACTGATCGGTGGTC | 59.826 | 60.000 | 22.00 | 22.00 | 36.14 | 4.02 |
2640 | 2821 | 0.464036 | TAGTTCTACGCCCTGCATGG | 59.536 | 55.000 | 3.22 | 3.22 | 0.00 | 3.66 |
2642 | 2823 | 1.683917 | CTCTAGTTCTACGCCCTGCAT | 59.316 | 52.381 | 0.00 | 0.00 | 0.00 | 3.96 |
2840 | 3021 | 8.154203 | TCATGTCAAGTTATTTCAGGACAAGTA | 58.846 | 33.333 | 0.00 | 0.00 | 38.58 | 2.24 |
2882 | 3065 | 4.201871 | CCAACTTAAAGTCTTGCACGACAA | 60.202 | 41.667 | 23.55 | 9.71 | 36.38 | 3.18 |
3015 | 3199 | 0.809636 | CTGACACCACAACGCAGACA | 60.810 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
3024 | 3208 | 1.832883 | ACTGCAAAACTGACACCACA | 58.167 | 45.000 | 0.00 | 0.00 | 0.00 | 4.17 |
3089 | 3273 | 1.366111 | GCAACATCGAGCGGGCTTAA | 61.366 | 55.000 | 0.00 | 0.00 | 0.00 | 1.85 |
3098 | 3282 | 0.041839 | GGCTAATGCGCAACATCGAG | 60.042 | 55.000 | 17.11 | 6.69 | 38.34 | 4.04 |
3148 | 3589 | 8.664669 | AACCAAACATGAAGAAATAACCCTAT | 57.335 | 30.769 | 0.00 | 0.00 | 0.00 | 2.57 |
3152 | 3593 | 6.674066 | TCGAACCAAACATGAAGAAATAACC | 58.326 | 36.000 | 0.00 | 0.00 | 0.00 | 2.85 |
3180 | 3621 | 2.826128 | TGAGTTCTCCACTAGCGTGAAT | 59.174 | 45.455 | 0.00 | 0.00 | 43.97 | 2.57 |
3217 | 3658 | 8.196771 | GGCTAAAATGGATCATTGTTACATTGA | 58.803 | 33.333 | 11.55 | 11.55 | 34.04 | 2.57 |
3255 | 3696 | 6.380079 | AGAAAGAACACTCCAACCTATCAT | 57.620 | 37.500 | 0.00 | 0.00 | 0.00 | 2.45 |
3256 | 3697 | 5.825593 | AGAAAGAACACTCCAACCTATCA | 57.174 | 39.130 | 0.00 | 0.00 | 0.00 | 2.15 |
3258 | 3699 | 7.741554 | AGATAGAAAGAACACTCCAACCTAT | 57.258 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3260 | 3701 | 6.043243 | TGAAGATAGAAAGAACACTCCAACCT | 59.957 | 38.462 | 0.00 | 0.00 | 0.00 | 3.50 |
3320 | 3801 | 2.295909 | GGTCATCATCGAGAGGAAGGAG | 59.704 | 54.545 | 0.00 | 0.00 | 39.01 | 3.69 |
3352 | 4098 | 1.013596 | CGCGGCTTACATTCCAATCA | 58.986 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3405 | 4151 | 5.049828 | TCACAGCATCACCGATTAATACAG | 58.950 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
3424 | 4170 | 6.054941 | TGATTTCTTTACAAGAGTGCTCACA | 58.945 | 36.000 | 2.63 | 0.00 | 39.03 | 3.58 |
3427 | 4173 | 7.608308 | ATCTGATTTCTTTACAAGAGTGCTC | 57.392 | 36.000 | 0.00 | 0.00 | 39.03 | 4.26 |
3435 | 4181 | 5.477984 | AGCCAGCAATCTGATTTCTTTACAA | 59.522 | 36.000 | 0.00 | 0.00 | 42.95 | 2.41 |
3509 | 4256 | 8.623903 | ACATCATGCGAATAACAAGATAACAAT | 58.376 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
3511 | 4258 | 7.279758 | TGACATCATGCGAATAACAAGATAACA | 59.720 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3512 | 4259 | 7.584123 | GTGACATCATGCGAATAACAAGATAAC | 59.416 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
3513 | 4260 | 7.254761 | GGTGACATCATGCGAATAACAAGATAA | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 1.75 |
3514 | 4261 | 6.202762 | GGTGACATCATGCGAATAACAAGATA | 59.797 | 38.462 | 0.00 | 0.00 | 0.00 | 1.98 |
3515 | 4262 | 5.008019 | GGTGACATCATGCGAATAACAAGAT | 59.992 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
3516 | 4263 | 4.332543 | GGTGACATCATGCGAATAACAAGA | 59.667 | 41.667 | 0.00 | 0.00 | 0.00 | 3.02 |
3517 | 4264 | 4.333649 | AGGTGACATCATGCGAATAACAAG | 59.666 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
3518 | 4265 | 4.260985 | AGGTGACATCATGCGAATAACAA | 58.739 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
3519 | 4266 | 3.872696 | AGGTGACATCATGCGAATAACA | 58.127 | 40.909 | 0.00 | 0.00 | 0.00 | 2.41 |
3520 | 4267 | 4.094887 | ACAAGGTGACATCATGCGAATAAC | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 1.89 |
3527 | 4274 | 2.346803 | ACGTACAAGGTGACATCATGC | 58.653 | 47.619 | 0.00 | 0.00 | 0.00 | 4.06 |
3533 | 4280 | 4.339872 | ACCATAAACGTACAAGGTGACA | 57.660 | 40.909 | 0.00 | 0.00 | 0.00 | 3.58 |
3538 | 4285 | 7.046033 | AGGAAGATTACCATAAACGTACAAGG | 58.954 | 38.462 | 0.00 | 0.00 | 0.00 | 3.61 |
3540 | 4287 | 7.844009 | AGAGGAAGATTACCATAAACGTACAA | 58.156 | 34.615 | 0.00 | 0.00 | 0.00 | 2.41 |
3571 | 4318 | 5.412594 | AGCAGAATGAAGCAAACGAAGATAA | 59.587 | 36.000 | 0.00 | 0.00 | 39.69 | 1.75 |
3578 | 4325 | 1.717645 | GCAAGCAGAATGAAGCAAACG | 59.282 | 47.619 | 0.00 | 0.00 | 39.69 | 3.60 |
3584 | 4331 | 4.868067 | AGAAACAAGCAAGCAGAATGAAG | 58.132 | 39.130 | 0.00 | 0.00 | 39.69 | 3.02 |
3601 | 4348 | 4.142881 | CGGAAAGCAAGGTTAGCTAGAAAC | 60.143 | 45.833 | 0.00 | 0.00 | 42.53 | 2.78 |
3606 | 4353 | 2.565834 | AGTCGGAAAGCAAGGTTAGCTA | 59.434 | 45.455 | 0.00 | 0.00 | 42.53 | 3.32 |
3608 | 4355 | 1.732809 | GAGTCGGAAAGCAAGGTTAGC | 59.267 | 52.381 | 0.00 | 0.00 | 0.00 | 3.09 |
3636 | 4383 | 6.128445 | CGCTGACACTCACATTTCTTATCTTT | 60.128 | 38.462 | 0.00 | 0.00 | 0.00 | 2.52 |
3647 | 4394 | 1.293498 | GGGACGCTGACACTCACAT | 59.707 | 57.895 | 0.00 | 0.00 | 0.00 | 3.21 |
3648 | 4395 | 2.734591 | GGGACGCTGACACTCACA | 59.265 | 61.111 | 0.00 | 0.00 | 0.00 | 3.58 |
3649 | 4396 | 2.048127 | GGGGACGCTGACACTCAC | 60.048 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
3740 | 4487 | 4.475135 | GGTTGGGCCTCCGAGCTC | 62.475 | 72.222 | 4.53 | 2.73 | 40.83 | 4.09 |
3841 | 4588 | 1.211212 | TGCCTTCTGATCCACTGGATG | 59.789 | 52.381 | 15.78 | 2.24 | 43.27 | 3.51 |
3865 | 4612 | 4.109675 | AAAGGGGGATCGGTGCCG | 62.110 | 66.667 | 0.00 | 3.94 | 36.54 | 5.69 |
3867 | 4614 | 2.124278 | GGAAAGGGGGATCGGTGC | 60.124 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
3868 | 4615 | 2.595655 | GGGAAAGGGGGATCGGTG | 59.404 | 66.667 | 0.00 | 0.00 | 0.00 | 4.94 |
3869 | 4616 | 2.694992 | GGGGAAAGGGGGATCGGT | 60.695 | 66.667 | 0.00 | 0.00 | 0.00 | 4.69 |
3870 | 4617 | 2.368329 | AGGGGAAAGGGGGATCGG | 60.368 | 66.667 | 0.00 | 0.00 | 0.00 | 4.18 |
3871 | 4618 | 1.384643 | AGAGGGGAAAGGGGGATCG | 60.385 | 63.158 | 0.00 | 0.00 | 0.00 | 3.69 |
3872 | 4619 | 1.411651 | CGAGAGGGGAAAGGGGGATC | 61.412 | 65.000 | 0.00 | 0.00 | 0.00 | 3.36 |
3873 | 4620 | 1.384643 | CGAGAGGGGAAAGGGGGAT | 60.385 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
3874 | 4621 | 2.040606 | CGAGAGGGGAAAGGGGGA | 59.959 | 66.667 | 0.00 | 0.00 | 0.00 | 4.81 |
3875 | 4622 | 3.798511 | GCGAGAGGGGAAAGGGGG | 61.799 | 72.222 | 0.00 | 0.00 | 0.00 | 5.40 |
3876 | 4623 | 2.689034 | AGCGAGAGGGGAAAGGGG | 60.689 | 66.667 | 0.00 | 0.00 | 0.00 | 4.79 |
3877 | 4624 | 1.553690 | TTGAGCGAGAGGGGAAAGGG | 61.554 | 60.000 | 0.00 | 0.00 | 0.00 | 3.95 |
3878 | 4625 | 0.107945 | CTTGAGCGAGAGGGGAAAGG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.11 |
3879 | 4626 | 0.898320 | TCTTGAGCGAGAGGGGAAAG | 59.102 | 55.000 | 0.00 | 0.00 | 0.00 | 2.62 |
3880 | 4627 | 1.002087 | GTTCTTGAGCGAGAGGGGAAA | 59.998 | 52.381 | 0.00 | 0.00 | 0.00 | 3.13 |
3881 | 4628 | 0.608640 | GTTCTTGAGCGAGAGGGGAA | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
3882 | 4629 | 1.258445 | GGTTCTTGAGCGAGAGGGGA | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3883 | 4630 | 1.219393 | GGTTCTTGAGCGAGAGGGG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 4.79 |
3884 | 4631 | 1.219393 | GGGTTCTTGAGCGAGAGGG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
3885 | 4632 | 1.407258 | CTAGGGTTCTTGAGCGAGAGG | 59.593 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
3886 | 4633 | 1.202359 | GCTAGGGTTCTTGAGCGAGAG | 60.202 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
3887 | 4634 | 0.818296 | GCTAGGGTTCTTGAGCGAGA | 59.182 | 55.000 | 0.00 | 0.00 | 0.00 | 4.04 |
3888 | 4635 | 0.820871 | AGCTAGGGTTCTTGAGCGAG | 59.179 | 55.000 | 0.00 | 0.00 | 39.96 | 5.03 |
3889 | 4636 | 1.749634 | GTAGCTAGGGTTCTTGAGCGA | 59.250 | 52.381 | 0.00 | 0.00 | 39.96 | 4.93 |
3890 | 4637 | 1.202428 | GGTAGCTAGGGTTCTTGAGCG | 60.202 | 57.143 | 0.00 | 0.00 | 39.96 | 5.03 |
3891 | 4638 | 1.831736 | TGGTAGCTAGGGTTCTTGAGC | 59.168 | 52.381 | 0.00 | 0.00 | 35.07 | 4.26 |
3892 | 4639 | 4.443598 | GGATTGGTAGCTAGGGTTCTTGAG | 60.444 | 50.000 | 0.00 | 0.00 | 0.00 | 3.02 |
3893 | 4640 | 3.454812 | GGATTGGTAGCTAGGGTTCTTGA | 59.545 | 47.826 | 0.00 | 0.00 | 0.00 | 3.02 |
3908 | 4655 | 2.307686 | AGTACACGAATTGGGGATTGGT | 59.692 | 45.455 | 0.00 | 0.00 | 37.18 | 3.67 |
3911 | 4658 | 3.775316 | AGAGAGTACACGAATTGGGGATT | 59.225 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3913 | 4660 | 2.496070 | CAGAGAGTACACGAATTGGGGA | 59.504 | 50.000 | 0.00 | 0.00 | 0.00 | 4.81 |
3914 | 4661 | 2.233922 | ACAGAGAGTACACGAATTGGGG | 59.766 | 50.000 | 0.00 | 0.00 | 0.00 | 4.96 |
3915 | 4662 | 3.594603 | ACAGAGAGTACACGAATTGGG | 57.405 | 47.619 | 0.00 | 0.00 | 0.00 | 4.12 |
3916 | 4663 | 5.573282 | CAGTTACAGAGAGTACACGAATTGG | 59.427 | 44.000 | 0.00 | 0.00 | 30.91 | 3.16 |
3917 | 4664 | 6.379386 | TCAGTTACAGAGAGTACACGAATTG | 58.621 | 40.000 | 0.00 | 0.00 | 30.91 | 2.32 |
3928 | 4727 | 6.459066 | TCAAGGTTCAATCAGTTACAGAGAG | 58.541 | 40.000 | 0.00 | 0.00 | 0.00 | 3.20 |
3929 | 4728 | 6.419484 | TCAAGGTTCAATCAGTTACAGAGA | 57.581 | 37.500 | 0.00 | 0.00 | 0.00 | 3.10 |
3931 | 4730 | 9.383519 | GATTATCAAGGTTCAATCAGTTACAGA | 57.616 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3932 | 4731 | 8.616076 | GGATTATCAAGGTTCAATCAGTTACAG | 58.384 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3933 | 4732 | 8.328758 | AGGATTATCAAGGTTCAATCAGTTACA | 58.671 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
3934 | 4733 | 8.738645 | AGGATTATCAAGGTTCAATCAGTTAC | 57.261 | 34.615 | 0.00 | 0.00 | 0.00 | 2.50 |
3935 | 4734 | 7.993183 | GGAGGATTATCAAGGTTCAATCAGTTA | 59.007 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
3937 | 4736 | 6.159398 | AGGAGGATTATCAAGGTTCAATCAGT | 59.841 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
3940 | 4739 | 7.228308 | CAGAAGGAGGATTATCAAGGTTCAATC | 59.772 | 40.741 | 0.00 | 0.00 | 0.00 | 2.67 |
3941 | 4740 | 7.059156 | CAGAAGGAGGATTATCAAGGTTCAAT | 58.941 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
3946 | 4745 | 4.043596 | AGCAGAAGGAGGATTATCAAGGT | 58.956 | 43.478 | 0.00 | 0.00 | 0.00 | 3.50 |
3947 | 4746 | 4.703379 | AGCAGAAGGAGGATTATCAAGG | 57.297 | 45.455 | 0.00 | 0.00 | 0.00 | 3.61 |
3948 | 4747 | 7.901029 | TGTATAGCAGAAGGAGGATTATCAAG | 58.099 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3949 | 4748 | 7.855784 | TGTATAGCAGAAGGAGGATTATCAA | 57.144 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
3951 | 4750 | 7.984617 | GGATTGTATAGCAGAAGGAGGATTATC | 59.015 | 40.741 | 0.00 | 0.00 | 0.00 | 1.75 |
3952 | 4751 | 7.364232 | CGGATTGTATAGCAGAAGGAGGATTAT | 60.364 | 40.741 | 0.00 | 0.00 | 0.00 | 1.28 |
3953 | 4752 | 6.071334 | CGGATTGTATAGCAGAAGGAGGATTA | 60.071 | 42.308 | 0.00 | 0.00 | 0.00 | 1.75 |
3954 | 4753 | 5.279708 | CGGATTGTATAGCAGAAGGAGGATT | 60.280 | 44.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3955 | 4754 | 4.221703 | CGGATTGTATAGCAGAAGGAGGAT | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 3.24 |
3956 | 4755 | 3.574396 | CGGATTGTATAGCAGAAGGAGGA | 59.426 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
3957 | 4756 | 3.574396 | TCGGATTGTATAGCAGAAGGAGG | 59.426 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
3958 | 4757 | 4.855715 | TCGGATTGTATAGCAGAAGGAG | 57.144 | 45.455 | 0.00 | 0.00 | 0.00 | 3.69 |
3959 | 4758 | 4.220821 | GGATCGGATTGTATAGCAGAAGGA | 59.779 | 45.833 | 0.00 | 0.00 | 0.00 | 3.36 |
3960 | 4759 | 4.499183 | GGATCGGATTGTATAGCAGAAGG | 58.501 | 47.826 | 0.00 | 0.00 | 0.00 | 3.46 |
3961 | 4760 | 4.221703 | AGGGATCGGATTGTATAGCAGAAG | 59.778 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3962 | 4761 | 4.021104 | CAGGGATCGGATTGTATAGCAGAA | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.02 |
3963 | 4762 | 3.511540 | CAGGGATCGGATTGTATAGCAGA | 59.488 | 47.826 | 0.00 | 0.00 | 0.00 | 4.26 |
3964 | 4763 | 3.854666 | CAGGGATCGGATTGTATAGCAG | 58.145 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
3965 | 4764 | 2.028112 | GCAGGGATCGGATTGTATAGCA | 60.028 | 50.000 | 0.00 | 0.00 | 0.00 | 3.49 |
3966 | 4765 | 2.234908 | AGCAGGGATCGGATTGTATAGC | 59.765 | 50.000 | 0.00 | 0.00 | 0.00 | 2.97 |
3967 | 4766 | 3.766591 | AGAGCAGGGATCGGATTGTATAG | 59.233 | 47.826 | 0.00 | 0.00 | 0.00 | 1.31 |
3968 | 4767 | 3.779444 | AGAGCAGGGATCGGATTGTATA | 58.221 | 45.455 | 0.00 | 0.00 | 0.00 | 1.47 |
3969 | 4768 | 2.614259 | AGAGCAGGGATCGGATTGTAT | 58.386 | 47.619 | 0.00 | 0.00 | 0.00 | 2.29 |
3970 | 4769 | 2.088104 | AGAGCAGGGATCGGATTGTA | 57.912 | 50.000 | 0.00 | 0.00 | 0.00 | 2.41 |
3971 | 4770 | 1.207791 | AAGAGCAGGGATCGGATTGT | 58.792 | 50.000 | 0.00 | 0.00 | 0.00 | 2.71 |
3972 | 4771 | 2.103094 | TGTAAGAGCAGGGATCGGATTG | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 2.67 |
3973 | 4772 | 2.103263 | GTGTAAGAGCAGGGATCGGATT | 59.897 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3974 | 4773 | 1.689273 | GTGTAAGAGCAGGGATCGGAT | 59.311 | 52.381 | 0.00 | 0.00 | 0.00 | 4.18 |
3978 | 4777 | 1.471676 | CCACGTGTAAGAGCAGGGATC | 60.472 | 57.143 | 15.65 | 0.00 | 0.00 | 3.36 |
3983 | 4782 | 3.128764 | TCTGATACCACGTGTAAGAGCAG | 59.871 | 47.826 | 15.65 | 13.73 | 31.94 | 4.24 |
3985 | 4784 | 3.377485 | TCTCTGATACCACGTGTAAGAGC | 59.623 | 47.826 | 15.65 | 0.00 | 35.62 | 4.09 |
3987 | 4786 | 3.693085 | GGTCTCTGATACCACGTGTAAGA | 59.307 | 47.826 | 15.65 | 8.48 | 36.96 | 2.10 |
4005 | 4804 | 0.545548 | GAAGGGAGGTGGAGTGGTCT | 60.546 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4006 | 4805 | 0.545548 | AGAAGGGAGGTGGAGTGGTC | 60.546 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4007 | 4806 | 0.104409 | AAGAAGGGAGGTGGAGTGGT | 60.104 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
4008 | 4807 | 0.615850 | GAAGAAGGGAGGTGGAGTGG | 59.384 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
4009 | 4808 | 1.552792 | GAGAAGAAGGGAGGTGGAGTG | 59.447 | 57.143 | 0.00 | 0.00 | 0.00 | 3.51 |
4010 | 4809 | 1.553651 | GGAGAAGAAGGGAGGTGGAGT | 60.554 | 57.143 | 0.00 | 0.00 | 0.00 | 3.85 |
4011 | 4810 | 1.199615 | GGAGAAGAAGGGAGGTGGAG | 58.800 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4012 | 4811 | 0.614979 | CGGAGAAGAAGGGAGGTGGA | 60.615 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
4013 | 4812 | 1.901085 | CGGAGAAGAAGGGAGGTGG | 59.099 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
4014 | 4813 | 1.219393 | GCGGAGAAGAAGGGAGGTG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 4.00 |
4015 | 4814 | 1.990614 | GGCGGAGAAGAAGGGAGGT | 60.991 | 63.158 | 0.00 | 0.00 | 0.00 | 3.85 |
4016 | 4815 | 1.990060 | TGGCGGAGAAGAAGGGAGG | 60.990 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
4018 | 4817 | 1.229209 | AGTGGCGGAGAAGAAGGGA | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.20 |
4019 | 4818 | 1.219393 | GAGTGGCGGAGAAGAAGGG | 59.781 | 63.158 | 0.00 | 0.00 | 0.00 | 3.95 |
4020 | 4819 | 0.108424 | CAGAGTGGCGGAGAAGAAGG | 60.108 | 60.000 | 0.00 | 0.00 | 0.00 | 3.46 |
4023 | 4822 | 3.700109 | CCAGAGTGGCGGAGAAGA | 58.300 | 61.111 | 0.00 | 0.00 | 0.00 | 2.87 |
4032 | 4831 | 1.002134 | ACGATTTGGGCCAGAGTGG | 60.002 | 57.895 | 6.23 | 0.71 | 41.55 | 4.00 |
4033 | 4832 | 1.361668 | CGACGATTTGGGCCAGAGTG | 61.362 | 60.000 | 6.23 | 1.13 | 0.00 | 3.51 |
4035 | 4834 | 0.807667 | CTCGACGATTTGGGCCAGAG | 60.808 | 60.000 | 6.23 | 4.14 | 0.00 | 3.35 |
4036 | 4835 | 1.218047 | CTCGACGATTTGGGCCAGA | 59.782 | 57.895 | 6.23 | 1.42 | 0.00 | 3.86 |
4037 | 4836 | 1.084370 | GTCTCGACGATTTGGGCCAG | 61.084 | 60.000 | 6.23 | 0.00 | 0.00 | 4.85 |
4038 | 4837 | 1.079405 | GTCTCGACGATTTGGGCCA | 60.079 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
4039 | 4838 | 0.806492 | GAGTCTCGACGATTTGGGCC | 60.806 | 60.000 | 0.00 | 0.00 | 36.20 | 5.80 |
4042 | 4841 | 1.140407 | GCCGAGTCTCGACGATTTGG | 61.140 | 60.000 | 23.74 | 5.24 | 43.74 | 3.28 |
4044 | 4843 | 4.787999 | GCCGAGTCTCGACGATTT | 57.212 | 55.556 | 23.74 | 0.00 | 43.74 | 2.17 |
4063 | 4862 | 2.951745 | GATCTCGCCTGTCGCACG | 60.952 | 66.667 | 0.00 | 0.00 | 37.30 | 5.34 |
4074 | 4873 | 1.659954 | GCTACCAGCTGCGATCTCG | 60.660 | 63.158 | 8.66 | 0.00 | 38.45 | 4.04 |
4075 | 4874 | 4.334837 | GCTACCAGCTGCGATCTC | 57.665 | 61.111 | 8.66 | 0.00 | 38.45 | 2.75 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.