AutoCloner

Multiple sequence alignment - TraesCS6B01G360500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G360500	chr6B	100.000	3110	0	0	1	3110	632303665	632306774	0.000000e+00	5744.0
1	TraesCS6B01G360500	chr6B	83.843	1145	116	28	987	2090	632422232	632423348	0.000000e+00	1026.0
2	TraesCS6B01G360500	chr6B	93.156	526	36	0	2582	3107	631809042	631808517	0.000000e+00	773.0
3	TraesCS6B01G360500	chr6B	86.305	701	86	9	1088	1784	632242912	632243606	0.000000e+00	754.0
4	TraesCS6B01G360500	chr6B	96.970	33	1	0	2404	2436	43156343	43156375	4.330000e-04	56.5
5	TraesCS6B01G360500	chr6A	93.239	1346	58	15	987	2318	562762113	562763439	0.000000e+00	1951.0
6	TraesCS6B01G360500	chr6A	83.479	1374	144	45	987	2289	562796760	562798121	0.000000e+00	1203.0
7	TraesCS6B01G360500	chr6A	81.974	1226	145	42	1090	2275	562869378	562870567	0.000000e+00	970.0
8	TraesCS6B01G360500	chr6A	82.909	1100	138	28	1046	2127	562920296	562921363	0.000000e+00	944.0
9	TraesCS6B01G360500	chr6A	82.993	1029	125	35	1096	2110	562813642	562814634	0.000000e+00	885.0
10	TraesCS6B01G360500	chr6A	90.222	225	20	1	2359	2581	562763723	562763947	3.030000e-75	292.0
11	TraesCS6B01G360500	chr6D	91.519	1356	63	19	987	2317	419447636	419448964	0.000000e+00	1820.0
12	TraesCS6B01G360500	chr6D	94.135	989	53	4	1	987	413806080	413807065	0.000000e+00	1500.0
13	TraesCS6B01G360500	chr6D	82.741	1379	135	53	995	2294	419484965	419486319	0.000000e+00	1133.0
14	TraesCS6B01G360500	chr6D	81.416	1243	162	42	1046	2254	419657408	419658615	0.000000e+00	952.0
15	TraesCS6B01G360500	chr6D	83.414	1031	129	30	1096	2108	419614778	419615784	0.000000e+00	918.0
16	TraesCS6B01G360500	chr6D	82.908	1059	133	26	1090	2127	419748451	419749482	0.000000e+00	909.0
17	TraesCS6B01G360500	chr6D	85.653	697	90	9	1092	1784	419286113	419286803	0.000000e+00	725.0
18	TraesCS6B01G360500	chr5B	98.486	991	13	1	1	989	69809427	69808437	0.000000e+00	1746.0
19	TraesCS6B01G360500	chr5B	97.780	991	21	1	1	991	606872383	606871394	0.000000e+00	1707.0
20	TraesCS6B01G360500	chr2A	97.998	999	17	3	1	997	27770333	27771330	0.000000e+00	1731.0
21	TraesCS6B01G360500	chr2A	96.970	33	1	0	2404	2436	553432870	553432838	4.330000e-04	56.5
22	TraesCS6B01G360500	chr1D	94.630	987	48	4	1	985	46667817	46668800	0.000000e+00	1524.0
23	TraesCS6B01G360500	chr3D	94.529	987	50	3	1	985	141587729	141588713	0.000000e+00	1520.0
24	TraesCS6B01G360500	chr3D	93.393	999	60	5	1	996	516851367	516852362	0.000000e+00	1474.0
25	TraesCS6B01G360500	chr3D	94.340	159	9	0	2582	2740	18946720	18946878	8.620000e-61	244.0
26	TraesCS6B01G360500	chr3D	88.435	147	15	2	2810	2955	18948569	18948714	3.190000e-40	176.0
27	TraesCS6B01G360500	chr3D	100.000	30	0	0	2404	2433	546260548	546260519	4.330000e-04	56.5
28	TraesCS6B01G360500	chr7D	93.441	991	60	4	1	989	292318933	292317946	0.000000e+00	1465.0
29	TraesCS6B01G360500	chrUn	93.000	1000	65	4	1	997	19132667	19131670	0.000000e+00	1454.0
30	TraesCS6B01G360500	chr2B	91.182	499	29	4	2602	3098	775458276	775457791	0.000000e+00	664.0
31	TraesCS6B01G360500	chr3B	86.631	374	33	9	2584	2955	133133273	133132915	6.250000e-107	398.0
32	TraesCS6B01G360500	chr2D	86.486	74	10	0	2581	2654	451007349	451007276	7.150000e-12	82.4
33	TraesCS6B01G360500	chr2D	94.118	34	2	0	2403	2436	651286981	651287014	6.000000e-03	52.8
34	TraesCS6B01G360500	chr5A	96.970	33	1	0	2404	2436	637118843	637118875	4.330000e-04	56.5

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G360500	chr6B	632303665	632306774	3109	False	5744.0	5744	100.0000	1	3110	1	chr6B.!!$F3	3109
1	TraesCS6B01G360500	chr6B	632422232	632423348	1116	False	1026.0	1026	83.8430	987	2090	1	chr6B.!!$F4	1103
2	TraesCS6B01G360500	chr6B	631808517	631809042	525	True	773.0	773	93.1560	2582	3107	1	chr6B.!!$R1	525
3	TraesCS6B01G360500	chr6B	632242912	632243606	694	False	754.0	754	86.3050	1088	1784	1	chr6B.!!$F2	696
4	TraesCS6B01G360500	chr6A	562796760	562798121	1361	False	1203.0	1203	83.4790	987	2289	1	chr6A.!!$F1	1302
5	TraesCS6B01G360500	chr6A	562762113	562763947	1834	False	1121.5	1951	91.7305	987	2581	2	chr6A.!!$F5	1594
6	TraesCS6B01G360500	chr6A	562869378	562870567	1189	False	970.0	970	81.9740	1090	2275	1	chr6A.!!$F3	1185
7	TraesCS6B01G360500	chr6A	562920296	562921363	1067	False	944.0	944	82.9090	1046	2127	1	chr6A.!!$F4	1081
8	TraesCS6B01G360500	chr6A	562813642	562814634	992	False	885.0	885	82.9930	1096	2110	1	chr6A.!!$F2	1014
9	TraesCS6B01G360500	chr6D	419447636	419448964	1328	False	1820.0	1820	91.5190	987	2317	1	chr6D.!!$F3	1330
10	TraesCS6B01G360500	chr6D	413806080	413807065	985	False	1500.0	1500	94.1350	1	987	1	chr6D.!!$F1	986
11	TraesCS6B01G360500	chr6D	419484965	419486319	1354	False	1133.0	1133	82.7410	995	2294	1	chr6D.!!$F4	1299
12	TraesCS6B01G360500	chr6D	419657408	419658615	1207	False	952.0	952	81.4160	1046	2254	1	chr6D.!!$F6	1208
13	TraesCS6B01G360500	chr6D	419614778	419615784	1006	False	918.0	918	83.4140	1096	2108	1	chr6D.!!$F5	1012
14	TraesCS6B01G360500	chr6D	419748451	419749482	1031	False	909.0	909	82.9080	1090	2127	1	chr6D.!!$F7	1037
15	TraesCS6B01G360500	chr6D	419286113	419286803	690	False	725.0	725	85.6530	1092	1784	1	chr6D.!!$F2	692
16	TraesCS6B01G360500	chr5B	69808437	69809427	990	True	1746.0	1746	98.4860	1	989	1	chr5B.!!$R1	988
17	TraesCS6B01G360500	chr5B	606871394	606872383	989	True	1707.0	1707	97.7800	1	991	1	chr5B.!!$R2	990
18	TraesCS6B01G360500	chr2A	27770333	27771330	997	False	1731.0	1731	97.9980	1	997	1	chr2A.!!$F1	996
19	TraesCS6B01G360500	chr1D	46667817	46668800	983	False	1524.0	1524	94.6300	1	985	1	chr1D.!!$F1	984
20	TraesCS6B01G360500	chr3D	141587729	141588713	984	False	1520.0	1520	94.5290	1	985	1	chr3D.!!$F1	984
21	TraesCS6B01G360500	chr3D	516851367	516852362	995	False	1474.0	1474	93.3930	1	996	1	chr3D.!!$F2	995
22	TraesCS6B01G360500	chr3D	18946720	18948714	1994	False	210.0	244	91.3875	2582	2955	2	chr3D.!!$F3	373
23	TraesCS6B01G360500	chr7D	292317946	292318933	987	True	1465.0	1465	93.4410	1	989	1	chr7D.!!$R1	988
24	TraesCS6B01G360500	chrUn	19131670	19132667	997	True	1454.0	1454	93.0000	1	997	1	chrUn.!!$R1	996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
402	405	1.460359	GCAACGTTTATTTCCGTCCGA	59.54	47.619	0.0	0.0	36.04	4.55	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2318	2571	0.770499	AGCAAATTTTGGGTTGGGGG	59.23	50.0	10.96	0.0	0.0	5.4	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
110	111	3.006430	TCTCATCGTGCAACAAGGTAAGA	59.994	43.478	0.00	0.00	35.74	2.10
322	325	6.309251	CACGGAAACTAAAAAGTTTTGCAAGA	59.691	34.615	0.61	0.00	41.49	3.02
402	405	1.460359	GCAACGTTTATTTCCGTCCGA	59.540	47.619	0.00	0.00	36.04	4.55
648	653	7.737972	TGCTAACTACATGTATTGTTTGTGT	57.262	32.000	13.77	0.97	39.87	3.72
1032	1040	4.319046	GCATTTCTCGAGTACGTCCGTATA	60.319	45.833	13.13	0.00	40.69	1.47
1033	1041	5.616424	GCATTTCTCGAGTACGTCCGTATAT	60.616	44.000	13.13	0.00	40.69	0.86
1034	1042	6.401474	GCATTTCTCGAGTACGTCCGTATATA	60.401	42.308	13.13	0.00	40.69	0.86
1035	1043	7.675870	GCATTTCTCGAGTACGTCCGTATATAT	60.676	40.741	13.13	0.00	40.69	0.86
1343	1373	1.078637	GGTTCCCGTGGACTAAGGC	60.079	63.158	0.00	0.00	0.00	4.35
1362	1404	1.678635	CCATCACCACGCCACCATT	60.679	57.895	0.00	0.00	0.00	3.16
1443	1500	1.454479	CATGATCTGGCCGGGCTTT	60.454	57.895	29.87	13.57	0.00	3.51
1741	1798	2.280389	CCGTCATGGGCTCCATCG	60.280	66.667	3.93	6.16	43.15	3.84
1825	1892	9.610705	CATATCAAAATGGACCAGGATAGATAG	57.389	37.037	0.00	0.00	0.00	2.08
1837	1928	3.514706	AGGATAGATAGACATGCAGCAGG	59.485	47.826	5.26	5.26	0.00	4.85
1884	2013	5.592282	TCATTTCCTTTGTGCTTTCAGTGTA	59.408	36.000	0.00	0.00	0.00	2.90
1954	2083	0.459489	GAGCAAGGACGAGATCAGCT	59.541	55.000	0.00	0.00	35.10	4.24
1962	2094	2.729479	CGAGATCAGCTGCCCCAGT	61.729	63.158	9.47	0.00	33.43	4.00
2019	2157	1.122632	TGCCCTTAACCTCGGTGACA	61.123	55.000	0.00	0.00	0.00	3.58
2054	2237	1.154016	GCAAGCAGTACGAGCTCGA	60.154	57.895	40.58	21.98	42.53	4.04
2189	2425	1.270826	ACTGCATAGTCCATCGATCGG	59.729	52.381	16.41	0.85	28.79	4.18
2275	2528	8.078596	CGATCTTATCATGTGACTATGTGAGAA	58.921	37.037	0.00	0.00	0.00	2.87
2318	2571	6.058183	AGCATTTCCTGTGATGGTTATACTC	58.942	40.000	0.00	0.00	30.41	2.59
2319	2572	5.239525	GCATTTCCTGTGATGGTTATACTCC	59.760	44.000	0.00	0.00	0.00	3.85
2320	2573	5.367945	TTTCCTGTGATGGTTATACTCCC	57.632	43.478	0.00	0.00	0.00	4.30
2321	2574	3.314693	TCCTGTGATGGTTATACTCCCC	58.685	50.000	0.00	0.00	0.00	4.81
2322	2575	2.372172	CCTGTGATGGTTATACTCCCCC	59.628	54.545	0.00	0.00	0.00	5.40
2323	2576	3.045634	CTGTGATGGTTATACTCCCCCA	58.954	50.000	0.00	0.00	0.00	4.96
2324	2577	3.458118	CTGTGATGGTTATACTCCCCCAA	59.542	47.826	0.00	0.00	0.00	4.12
2325	2578	3.201266	TGTGATGGTTATACTCCCCCAAC	59.799	47.826	0.00	0.00	0.00	3.77
2332	2804	4.573303	GGTTATACTCCCCCAACCCAAAAT	60.573	45.833	0.00	0.00	35.43	1.82
2383	2879	4.273969	TGGATGACGAAAAGTGTTTGTACC	59.726	41.667	0.00	0.00	0.00	3.34
2386	2882	1.941975	ACGAAAAGTGTTTGTACCCCG	59.058	47.619	0.00	0.00	0.00	5.73
2416	2912	3.904339	ACATATAGAGGCGATTTGAGGGT	59.096	43.478	0.00	0.00	0.00	4.34
2419	2915	0.539051	AGAGGCGATTTGAGGGTCTG	59.461	55.000	0.00	0.00	0.00	3.51
2427	2923	2.638480	TTTGAGGGTCTGTGTTGGAG	57.362	50.000	0.00	0.00	0.00	3.86
2431	2927	0.326264	AGGGTCTGTGTTGGAGATGC	59.674	55.000	0.00	0.00	0.00	3.91
2455	2953	7.171630	CCCTAGATGTACAAGGGTATGTATC	57.828	44.000	19.38	0.96	44.34	2.24
2462	2960	7.780008	TGTACAAGGGTATGTATCAAATTCG	57.220	36.000	0.00	0.00	38.03	3.34
2465	2963	7.316544	ACAAGGGTATGTATCAAATTCGAAC	57.683	36.000	0.00	0.00	0.00	3.95
2471	2969	7.307989	GGGTATGTATCAAATTCGAACCATGAG	60.308	40.741	0.00	0.00	0.00	2.90
2482	2980	2.284190	GAACCATGAGAGCTAACTGGC	58.716	52.381	0.00	0.00	0.00	4.85
2487	2985	0.612174	TGAGAGCTAACTGGCGACCT	60.612	55.000	0.00	0.00	37.29	3.85
2490	2988	0.458716	GAGCTAACTGGCGACCTGTC	60.459	60.000	8.40	0.00	34.63	3.51
2491	2989	1.185618	AGCTAACTGGCGACCTGTCA	61.186	55.000	8.40	0.00	34.63	3.58
2497	2995	3.311110	GGCGACCTGTCACTGGGA	61.311	66.667	5.59	0.00	0.00	4.37
2507	3005	2.124403	CACTGGGAGCTGGATGGC	60.124	66.667	0.00	0.00	0.00	4.40
2521	3019	2.253414	GATGGCAAGCGAACGGGTTC	62.253	60.000	0.00	1.45	33.12	3.62
2545	3043	3.953612	CCTGGCAATTTTAGGTCATAGCA	59.046	43.478	0.00	0.00	0.00	3.49
2598	3096	2.031012	TCAGGCTGCAAGTGGACG	59.969	61.111	10.34	0.00	35.30	4.79
2633	3131	2.029380	GTGCCCACTTAAAATCCCACAC	60.029	50.000	0.00	0.00	0.00	3.82
2637	3135	3.447229	CCCACTTAAAATCCCACACATCC	59.553	47.826	0.00	0.00	0.00	3.51
2657	3155	4.953868	CGTTCGTGGACACCCGCA	62.954	66.667	0.00	0.00	43.08	5.69
2666	3164	0.679505	GGACACCCGCATATCTAGCA	59.320	55.000	0.00	0.00	0.00	3.49
2772	4240	3.963428	AGCGTCTCCTCATACTTGTTT	57.037	42.857	0.00	0.00	0.00	2.83
2925	5044	3.437795	CTTGAAGCCTGGGCAGCG	61.438	66.667	14.39	0.00	44.88	5.18
2992	5111	2.045926	GGCCAACAGAGGTGCGAT	60.046	61.111	0.00	0.00	0.00	4.58
2999	5118	3.706373	AGAGGTGCGATGGCCGTT	61.706	61.111	0.00	0.00	41.15	4.44
3045	5164	4.426112	CTGCACGGAGAGCTCGCA	62.426	66.667	19.55	15.38	46.38	5.10
3073	5192	3.661648	GACATGGCCAGGGGTGGT	61.662	66.667	23.35	7.48	0.00	4.16
3074	5193	3.944250	GACATGGCCAGGGGTGGTG	62.944	68.421	23.35	10.67	0.00	4.17
3100	5219	4.183686	TACCACGGTAGAGCGCGC	62.184	66.667	26.66	26.66	0.00	6.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
300	303	8.648557	ATCTCTTGCAAAACTTTTTAGTTTCC	57.351	30.769	0.00	0.70	40.67	3.13
322	325	5.862924	TTTCGATCGCTTCTTTGAAATCT	57.137	34.783	11.09	0.00	0.00	2.40
402	405	3.067742	CCCGTCTATACTCGTTGGAACAT	59.932	47.826	0.00	0.00	39.30	2.71
648	653	5.221925	GCTTCCTCAATTCATACCCATCCTA	60.222	44.000	0.00	0.00	0.00	2.94
697	704	4.000988	TCTTTTAGCTTCATTCCCACGAC	58.999	43.478	0.00	0.00	0.00	4.34
1061	1069	1.547372	ACCTACGTGTCAGCGGTAATT	59.453	47.619	0.00	0.00	35.98	1.40
1113	1143	1.153353	CGCCCATGAAGTACACGTTT	58.847	50.000	0.00	0.00	0.00	3.60
1195	1225	1.076485	GCAGGATGAGGGCCAACAT	60.076	57.895	14.37	14.37	39.69	2.71
1287	1317	3.321648	AGGACCATCAGCACGGCA	61.322	61.111	0.00	0.00	0.00	5.69
1343	1373	3.643595	ATGGTGGCGTGGTGATGGG	62.644	63.158	0.00	0.00	0.00	4.00
1443	1500	0.776810	TGTTGGCCTGGAGGATGAAA	59.223	50.000	3.32	0.00	37.39	2.69
1741	1798	4.023291	AGAGTGATCTCCTCCTTGAGAAC	58.977	47.826	8.73	0.00	44.16	3.01
1821	1888	2.615912	GTTTCCCTGCTGCATGTCTATC	59.384	50.000	1.31	0.00	0.00	2.08
1822	1889	2.648059	GTTTCCCTGCTGCATGTCTAT	58.352	47.619	1.31	0.00	0.00	1.98
1823	1890	1.675714	CGTTTCCCTGCTGCATGTCTA	60.676	52.381	1.31	0.00	0.00	2.59
1824	1891	0.957395	CGTTTCCCTGCTGCATGTCT	60.957	55.000	1.31	0.00	0.00	3.41
1825	1892	1.237285	ACGTTTCCCTGCTGCATGTC	61.237	55.000	1.31	0.00	0.00	3.06
1837	1928	7.226720	ATGATGTCATTAGTATGGAACGTTTCC	59.773	37.037	3.60	6.96	41.09	3.13
1858	1966	5.404366	CACTGAAAGCACAAAGGAAATGATG	59.596	40.000	0.00	0.00	37.60	3.07
1884	2013	2.421073	CACGATGATCACTGCACCAATT	59.579	45.455	0.00	0.00	0.00	2.32
1954	2083	1.228124	CGGAAACTTGACTGGGGCA	60.228	57.895	0.00	0.00	0.00	5.36
1962	2094	0.937699	CGCTGACGTCGGAAACTTGA	60.938	55.000	28.38	0.00	33.53	3.02
2035	2179	2.161486	CGAGCTCGTACTGCTTGCC	61.161	63.158	27.79	0.00	41.30	4.52
2142	2351	3.561313	GGGGAAAAGCTAGATGGACAACA	60.561	47.826	0.00	0.00	0.00	3.33
2189	2425	4.095483	AGAAAAATCGTCTCCATGCATGAC	59.905	41.667	28.31	16.67	0.00	3.06
2318	2571	0.770499	AGCAAATTTTGGGTTGGGGG	59.230	50.000	10.96	0.00	0.00	5.40
2319	2572	2.106338	AGAAGCAAATTTTGGGTTGGGG	59.894	45.455	10.96	0.00	0.00	4.96
2320	2573	3.490439	AGAAGCAAATTTTGGGTTGGG	57.510	42.857	10.96	0.00	0.00	4.12
2321	2574	5.213891	ACTAGAAGCAAATTTTGGGTTGG	57.786	39.130	10.96	1.16	0.00	3.77
2322	2575	6.760770	TCAAACTAGAAGCAAATTTTGGGTTG	59.239	34.615	10.96	7.92	33.87	3.77
2323	2576	6.883744	TCAAACTAGAAGCAAATTTTGGGTT	58.116	32.000	10.96	4.02	0.00	4.11
2324	2577	6.478512	TCAAACTAGAAGCAAATTTTGGGT	57.521	33.333	10.96	0.00	0.00	4.51
2325	2578	7.710475	TCTTTCAAACTAGAAGCAAATTTTGGG	59.290	33.333	10.96	0.00	0.00	4.12
2332	2804	7.122055	TCCAAACTCTTTCAAACTAGAAGCAAA	59.878	33.333	0.00	0.00	0.00	3.68
2383	2879	2.289694	CCTCTATATGTCCTTTGCCGGG	60.290	54.545	2.18	0.00	0.00	5.73
2386	2882	2.037251	TCGCCTCTATATGTCCTTTGCC	59.963	50.000	0.00	0.00	0.00	4.52
2416	2912	1.833630	CTAGGGCATCTCCAACACAGA	59.166	52.381	0.00	0.00	36.21	3.41
2419	2915	2.171448	ACATCTAGGGCATCTCCAACAC	59.829	50.000	0.00	0.00	36.21	3.32
2451	2949	5.525378	AGCTCTCATGGTTCGAATTTGATAC	59.475	40.000	0.00	0.00	0.00	2.24
2452	2950	5.674525	AGCTCTCATGGTTCGAATTTGATA	58.325	37.500	0.00	0.00	0.00	2.15
2455	2953	5.352569	AGTTAGCTCTCATGGTTCGAATTTG	59.647	40.000	0.00	0.00	0.00	2.32
2462	2960	2.284190	GCCAGTTAGCTCTCATGGTTC	58.716	52.381	0.00	0.00	33.42	3.62
2465	2963	0.461548	TCGCCAGTTAGCTCTCATGG	59.538	55.000	0.00	0.00	0.00	3.66
2471	2969	0.458716	GACAGGTCGCCAGTTAGCTC	60.459	60.000	0.00	0.00	0.00	4.09
2482	2980	2.262915	GCTCCCAGTGACAGGTCG	59.737	66.667	0.00	0.00	0.00	4.79
2487	2985	1.556373	CCATCCAGCTCCCAGTGACA	61.556	60.000	0.00	0.00	0.00	3.58
2490	2988	2.124403	GCCATCCAGCTCCCAGTG	60.124	66.667	0.00	0.00	0.00	3.66
2491	2989	2.207501	CTTGCCATCCAGCTCCCAGT	62.208	60.000	0.00	0.00	0.00	4.00
2497	2995	2.042831	GTTCGCTTGCCATCCAGCT	61.043	57.895	0.00	0.00	0.00	4.24
2521	3019	1.173043	TGACCTAAAATTGCCAGGCG	58.827	50.000	7.03	0.00	32.31	5.52
2633	3131	1.374125	TGTCCACGAACGCAGGATG	60.374	57.895	10.97	0.00	40.87	3.51
2637	3135	3.041940	GGGTGTCCACGAACGCAG	61.042	66.667	0.00	0.00	0.00	5.18
2666	3164	8.531146	CAACCCACTTAATCCACTTTCAAATAT	58.469	33.333	0.00	0.00	0.00	1.28
2772	4240	0.037326	GACCCACTCTGCATCGTTCA	60.037	55.000	0.00	0.00	0.00	3.18
2982	5101	2.298158	CTAACGGCCATCGCACCTCT	62.298	60.000	2.24	0.00	43.89	3.69
2999	5118	4.408821	CAAGCAGCACGGGCCCTA	62.409	66.667	22.43	0.00	42.56	3.53
3035	5154	1.513160	GTGTCTCGTGCGAGCTCTC	60.513	63.158	15.86	4.04	41.71	3.20
3037	5156	2.872001	CGTGTCTCGTGCGAGCTC	60.872	66.667	15.86	2.73	41.71	4.09
3045	5164	2.126463	CCATGTCGCGTGTCTCGT	60.126	61.111	5.77	0.00	42.13	4.18
3073	5192	1.114119	TACCGTGGTACAGGTGTGCA	61.114	55.000	14.67	0.00	43.44	4.57
3074	5193	0.389426	CTACCGTGGTACAGGTGTGC	60.389	60.000	14.67	0.00	43.44	4.57
3078	5197	1.310933	CGCTCTACCGTGGTACAGGT	61.311	60.000	10.94	10.94	43.44	4.00

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.