AutoCloner

Multiple sequence alignment - TraesCS6B01G359800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G359800	chr6B	100.000	2354	0	0	1	2354	631742058	631739705	0.000000e+00	4348.0
1	TraesCS6B01G359800	chr6B	84.781	1439	133	49	6	1383	631192344	631193757	0.000000e+00	1365.0
2	TraesCS6B01G359800	chr6B	88.453	918	63	18	784	1687	631844116	631843228	0.000000e+00	1068.0
3	TraesCS6B01G359800	chr6B	84.653	1023	76	31	746	1712	631535080	631534083	0.000000e+00	944.0
4	TraesCS6B01G359800	chr6B	82.724	492	68	10	270	751	631247038	631246554	2.800000e-114	422.0
5	TraesCS6B01G359800	chr6B	82.718	515	30	21	281	743	631535621	631535114	1.010000e-108	403.0
6	TraesCS6B01G359800	chr6B	91.336	277	21	3	1726	2001	631843230	631842956	2.210000e-100	375.0
7	TraesCS6B01G359800	chr6B	86.268	284	27	7	1	275	631660245	631659965	4.920000e-77	298.0
8	TraesCS6B01G359800	chr6B	79.021	286	19	16	264	510	631846276	631845993	8.710000e-35	158.0
9	TraesCS6B01G359800	chr6B	90.385	52	0	2	528	578	631845954	631845907	1.950000e-06	63.9
10	TraesCS6B01G359800	chr6D	82.656	1747	106	78	79	1684	418883900	418882210	0.000000e+00	1365.0
11	TraesCS6B01G359800	chr6D	80.625	1311	135	62	270	1496	418770714	418769439	0.000000e+00	904.0
12	TraesCS6B01G359800	chr6D	84.396	910	85	34	611	1474	418893102	418892204	0.000000e+00	841.0
13	TraesCS6B01G359800	chr6D	94.468	470	22	4	1472	1938	418892101	418891633	0.000000e+00	721.0
14	TraesCS6B01G359800	chr6D	86.017	708	48	22	829	1496	418732811	418733507	0.000000e+00	712.0
15	TraesCS6B01G359800	chr6D	88.208	424	29	10	1927	2330	418891468	418891046	9.780000e-134	486.0
16	TraesCS6B01G359800	chr6D	82.414	580	58	18	175	715	418732156	418732730	1.270000e-127	466.0
17	TraesCS6B01G359800	chr6D	96.053	152	6	0	2203	2354	418724677	418724828	5.020000e-62	248.0
18	TraesCS6B01G359800	chr6D	86.096	187	13	4	2	180	418730584	418730765	3.090000e-44	189.0
19	TraesCS6B01G359800	chr6A	83.740	1556	121	52	222	1684	562471301	562469785	0.000000e+00	1351.0
20	TraesCS6B01G359800	chr6A	80.945	1375	129	72	270	1540	562271221	562272566	0.000000e+00	965.0
21	TraesCS6B01G359800	chr6A	84.979	972	88	28	746	1684	562250629	562251575	0.000000e+00	933.0
22	TraesCS6B01G359800	chr6A	83.927	983	64	50	757	1682	562488134	562487189	0.000000e+00	854.0
23	TraesCS6B01G359800	chr6A	85.965	798	56	29	750	1496	562400733	562399941	0.000000e+00	802.0
24	TraesCS6B01G359800	chr6A	88.933	506	30	9	1711	2194	562487189	562486688	3.350000e-168	601.0
25	TraesCS6B01G359800	chr6A	86.667	330	26	7	159	471	562249573	562249901	1.340000e-92	350.0
26	TraesCS6B01G359800	chr6A	80.525	457	58	24	270	715	562402389	562401953	2.920000e-84	322.0
27	TraesCS6B01G359800	chr6A	91.975	162	11	2	2192	2352	562485520	562485360	2.350000e-55	226.0
28	TraesCS6B01G359800	chr6A	83.333	192	12	8	569	751	562250423	562250603	2.420000e-35	159.0
29	TraesCS6B01G359800	chr6A	94.286	70	4	0	2	71	562244264	562244333	8.900000e-20	108.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G359800	chr6B	631739705	631742058	2353	True	4348.000000	4348	100.000000	1	2354	1	chr6B.!!$R3	2353
1	TraesCS6B01G359800	chr6B	631192344	631193757	1413	False	1365.000000	1365	84.781000	6	1383	1	chr6B.!!$F1	1377
2	TraesCS6B01G359800	chr6B	631534083	631535621	1538	True	673.500000	944	83.685500	281	1712	2	chr6B.!!$R4	1431
3	TraesCS6B01G359800	chr6B	631842956	631846276	3320	True	416.225000	1068	87.298750	264	2001	4	chr6B.!!$R5	1737
4	TraesCS6B01G359800	chr6D	418882210	418883900	1690	True	1365.000000	1365	82.656000	79	1684	1	chr6D.!!$R2	1605
5	TraesCS6B01G359800	chr6D	418769439	418770714	1275	True	904.000000	904	80.625000	270	1496	1	chr6D.!!$R1	1226
6	TraesCS6B01G359800	chr6D	418891046	418893102	2056	True	682.666667	841	89.024000	611	2330	3	chr6D.!!$R3	1719
7	TraesCS6B01G359800	chr6D	418730584	418733507	2923	False	455.666667	712	84.842333	2	1496	3	chr6D.!!$F2	1494
8	TraesCS6B01G359800	chr6A	562469785	562471301	1516	True	1351.000000	1351	83.740000	222	1684	1	chr6A.!!$R1	1462
9	TraesCS6B01G359800	chr6A	562271221	562272566	1345	False	965.000000	965	80.945000	270	1540	1	chr6A.!!$F2	1270
10	TraesCS6B01G359800	chr6A	562399941	562402389	2448	True	562.000000	802	83.245000	270	1496	2	chr6A.!!$R2	1226
11	TraesCS6B01G359800	chr6A	562485360	562488134	2774	True	560.333333	854	88.278333	757	2352	3	chr6A.!!$R3	1595
12	TraesCS6B01G359800	chr6A	562249573	562251575	2002	False	480.666667	933	84.993000	159	1684	3	chr6A.!!$F3	1525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
348	1761	1.410882	GCTAGACTAGAGCCCAACCAG	59.589	57.143	13.91	0.0	33.6	4.0	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1687	6682	0.401738	TCCCCTTGCTCTTGTCTTGG	59.598	55.0	0.0	0.0	0.0	3.61	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
42	43	2.422597	CCTACAAGCCACGATGACAAA	58.577	47.619	0.00	0.00	0.00	2.83
53	54	4.093514	CACGATGACAAAATGCTCATGAC	58.906	43.478	0.00	0.00	0.00	3.06
82	83	4.478206	TGCCCATGAGAAAAACAACAAA	57.522	36.364	0.00	0.00	0.00	2.83
94	95	6.328934	AGAAAAACAACAAATAATCCCCACCT	59.671	34.615	0.00	0.00	0.00	4.00
95	96	6.508030	AAAACAACAAATAATCCCCACCTT	57.492	33.333	0.00	0.00	0.00	3.50
96	97	5.738619	AACAACAAATAATCCCCACCTTC	57.261	39.130	0.00	0.00	0.00	3.46
97	98	5.010708	ACAACAAATAATCCCCACCTTCT	57.989	39.130	0.00	0.00	0.00	2.85
142	148	6.219302	ACAAGCTACATTTTACACACGTAC	57.781	37.500	0.00	0.00	0.00	3.67
166	180	2.582636	ACCCAAGATGAAATACAGCCCT	59.417	45.455	0.00	0.00	35.25	5.19
197	1607	7.671398	AGATAAACCATGTTTGAGACCTTGAAT	59.329	33.333	2.60	0.00	0.00	2.57
199	1609	4.728772	ACCATGTTTGAGACCTTGAATGA	58.271	39.130	0.00	0.00	0.00	2.57
245	1656	4.916870	ACAAAGAAAGAAACGTTGCCTAC	58.083	39.130	0.00	1.39	31.96	3.18
314	1726	3.688694	ACAGCTACAATCCAACGGTTA	57.311	42.857	0.00	0.00	0.00	2.85
343	1755	1.482593	GCAAAGCTAGACTAGAGCCCA	59.517	52.381	13.91	0.00	41.06	5.36
348	1761	1.410882	GCTAGACTAGAGCCCAACCAG	59.589	57.143	13.91	0.00	33.60	4.00
362	1776	2.288763	CCAACCAGTTAATTGCCACCAC	60.289	50.000	0.00	0.00	0.00	4.16
424	1850	1.892338	CAAACATGCCAATCCGCCT	59.108	52.632	0.00	0.00	0.00	5.52
701	3783	3.756677	CGTGTCAGCGACGCACAG	61.757	66.667	23.70	11.51	42.42	3.66
850	5521	3.118519	AGTCCTATAAAAACCACCGCGAT	60.119	43.478	8.23	0.00	0.00	4.58
870	5552	3.995669	CCGCGAACCACACACACG	61.996	66.667	8.23	0.00	0.00	4.49
871	5553	2.957489	CGCGAACCACACACACGA	60.957	61.111	0.00	0.00	0.00	4.35
1138	5873	1.433879	CTCTACCACCCGCTCTTCG	59.566	63.158	0.00	0.00	38.08	3.79
1253	5988	2.473760	CGCTCGTCGACAGGGAGAT	61.474	63.158	19.28	0.00	41.67	2.75
1278	6019	3.402691	CTCGCACTCCTCGTCGCAT	62.403	63.158	0.00	0.00	0.00	4.73
1404	6187	2.018544	CCGGCTTTCGTGTGTTGAA	58.981	52.632	0.00	0.00	37.11	2.69
1408	6191	1.668751	GGCTTTCGTGTGTTGAACAGA	59.331	47.619	0.00	0.00	40.26	3.41
1410	6193	2.851008	GCTTTCGTGTGTTGAACAGAGC	60.851	50.000	0.00	0.00	40.26	4.09
1411	6194	2.017138	TTCGTGTGTTGAACAGAGCA	57.983	45.000	0.00	0.00	40.26	4.26
1513	6439	2.292016	AGATTCCAGATACAGAGACGCG	59.708	50.000	3.53	3.53	0.00	6.01
1548	6521	4.525487	AGTTGGTGATTAGTCAGTTACCGA	59.475	41.667	0.00	0.00	34.36	4.69
1648	6643	4.394729	TGAAACCAGTAGGCTTTTCGATT	58.605	39.130	0.00	0.00	39.06	3.34
1658	6653	8.860128	CAGTAGGCTTTTCGATTTTATTTTTCC	58.140	33.333	0.00	0.00	0.00	3.13
1687	6682	8.408601	AGGATTAACATGATTTATGCTGTCAAC	58.591	33.333	0.00	0.00	40.59	3.18
1688	6683	7.649306	GGATTAACATGATTTATGCTGTCAACC	59.351	37.037	0.00	0.00	40.59	3.77
1689	6684	5.981088	AACATGATTTATGCTGTCAACCA	57.019	34.783	0.00	0.00	40.59	3.67
1690	6685	5.981088	ACATGATTTATGCTGTCAACCAA	57.019	34.783	0.00	0.00	40.59	3.67
1691	6686	5.957798	ACATGATTTATGCTGTCAACCAAG	58.042	37.500	0.00	0.00	40.59	3.61
1692	6687	5.711506	ACATGATTTATGCTGTCAACCAAGA	59.288	36.000	0.00	0.00	40.59	3.02
1693	6688	5.627499	TGATTTATGCTGTCAACCAAGAC	57.373	39.130	0.00	0.00	38.99	3.01
1694	6689	5.069318	TGATTTATGCTGTCAACCAAGACA	58.931	37.500	0.00	0.00	45.64	3.41
1695	6690	5.534278	TGATTTATGCTGTCAACCAAGACAA	59.466	36.000	0.00	0.00	46.90	3.18
1696	6691	5.437289	TTTATGCTGTCAACCAAGACAAG	57.563	39.130	0.00	0.00	46.90	3.16
1697	6692	2.708216	TGCTGTCAACCAAGACAAGA	57.292	45.000	0.00	0.00	46.90	3.02
1698	6693	2.564771	TGCTGTCAACCAAGACAAGAG	58.435	47.619	0.00	0.00	46.90	2.85
1699	6694	1.265365	GCTGTCAACCAAGACAAGAGC	59.735	52.381	0.00	0.00	46.90	4.09
1700	6695	2.564771	CTGTCAACCAAGACAAGAGCA	58.435	47.619	0.00	0.00	46.90	4.26
1701	6696	2.945008	CTGTCAACCAAGACAAGAGCAA	59.055	45.455	0.00	0.00	46.90	3.91
1702	6697	2.945008	TGTCAACCAAGACAAGAGCAAG	59.055	45.455	0.00	0.00	44.92	4.01
1703	6698	2.291741	GTCAACCAAGACAAGAGCAAGG	59.708	50.000	0.00	0.00	38.40	3.61
1704	6699	1.610522	CAACCAAGACAAGAGCAAGGG	59.389	52.381	0.00	0.00	0.00	3.95
1705	6700	0.111253	ACCAAGACAAGAGCAAGGGG	59.889	55.000	0.00	0.00	0.00	4.79
1706	6701	0.401738	CCAAGACAAGAGCAAGGGGA	59.598	55.000	0.00	0.00	0.00	4.81
1707	6702	1.202927	CCAAGACAAGAGCAAGGGGAA	60.203	52.381	0.00	0.00	0.00	3.97
1708	6703	2.157738	CAAGACAAGAGCAAGGGGAAG	58.842	52.381	0.00	0.00	0.00	3.46
1709	6704	1.439543	AGACAAGAGCAAGGGGAAGT	58.560	50.000	0.00	0.00	0.00	3.01
1710	6705	1.777272	AGACAAGAGCAAGGGGAAGTT	59.223	47.619	0.00	0.00	0.00	2.66
1711	6706	2.979678	AGACAAGAGCAAGGGGAAGTTA	59.020	45.455	0.00	0.00	0.00	2.24
1712	6707	3.394606	AGACAAGAGCAAGGGGAAGTTAA	59.605	43.478	0.00	0.00	0.00	2.01
1713	6708	3.487372	ACAAGAGCAAGGGGAAGTTAAC	58.513	45.455	0.00	0.00	0.00	2.01
1714	6709	3.138468	ACAAGAGCAAGGGGAAGTTAACT	59.862	43.478	1.12	1.12	0.00	2.24
1715	6710	4.349930	ACAAGAGCAAGGGGAAGTTAACTA	59.650	41.667	8.92	0.00	0.00	2.24
1716	6711	4.828072	AGAGCAAGGGGAAGTTAACTAG	57.172	45.455	8.92	0.00	0.00	2.57
1717	6712	4.168883	AGAGCAAGGGGAAGTTAACTAGT	58.831	43.478	8.92	0.00	0.00	2.57
1718	6713	4.020128	AGAGCAAGGGGAAGTTAACTAGTG	60.020	45.833	8.92	2.66	0.00	2.74
1719	6714	3.908103	AGCAAGGGGAAGTTAACTAGTGA	59.092	43.478	8.92	0.00	0.00	3.41
1720	6715	4.020128	AGCAAGGGGAAGTTAACTAGTGAG	60.020	45.833	8.92	0.00	0.00	3.51
1721	6716	4.254492	CAAGGGGAAGTTAACTAGTGAGC	58.746	47.826	8.92	0.00	0.00	4.26
1722	6717	3.792515	AGGGGAAGTTAACTAGTGAGCT	58.207	45.455	8.92	0.00	0.00	4.09
1723	6718	4.168883	AGGGGAAGTTAACTAGTGAGCTT	58.831	43.478	8.99	8.99	0.00	3.74
1724	6719	5.339477	AGGGGAAGTTAACTAGTGAGCTTA	58.661	41.667	8.92	0.00	0.00	3.09
1725	6720	5.187381	AGGGGAAGTTAACTAGTGAGCTTAC	59.813	44.000	10.05	10.05	0.00	2.34
1726	6721	5.046807	GGGGAAGTTAACTAGTGAGCTTACA	60.047	44.000	18.23	0.00	0.00	2.41
1727	6722	6.461640	GGGAAGTTAACTAGTGAGCTTACAA	58.538	40.000	18.23	0.00	0.00	2.41
1877	6916	1.542915	AGCTACAGTGGCAATGCAAAG	59.457	47.619	15.76	11.09	0.00	2.77
1977	7194	1.525995	CACAGGAAACACAGCCCGT	60.526	57.895	0.00	0.00	0.00	5.28
2089	7327	4.660938	GAGTGCCCCGGCCTGTTT	62.661	66.667	0.00	0.00	41.09	2.83
2100	7338	2.074920	GCCTGTTTTCGCGCTTTCG	61.075	57.895	5.56	0.00	39.07	3.46
2128	7366	0.109272	CACAGCGGCGAGAAGTTCTA	60.109	55.000	12.98	0.00	0.00	2.10
2140	7378	0.770557	AAGTTCTACTGGGGGTGGCA	60.771	55.000	0.00	0.00	0.00	4.92
2141	7379	0.770557	AGTTCTACTGGGGGTGGCAA	60.771	55.000	0.00	0.00	0.00	4.52
2221	8630	2.431454	CTCTTCCTGGTCCAAAGAAGC	58.569	52.381	19.88	0.00	36.50	3.86
2233	8642	7.999679	TGGTCCAAAGAAGCAATAATATTCTG	58.000	34.615	0.00	0.00	33.67	3.02
2330	8741	6.223120	ACATCTTTGCAACCATTTTAACTCC	58.777	36.000	0.00	0.00	0.00	3.85
2348	8759	5.886960	ACTCCTCCGATTTCAAAAATCTG	57.113	39.130	9.90	4.68	0.00	2.90
2352	8763	7.447238	ACTCCTCCGATTTCAAAAATCTGTTTA	59.553	33.333	9.90	0.00	0.00	2.01
2353	8764	8.172352	TCCTCCGATTTCAAAAATCTGTTTAA	57.828	30.769	9.90	0.00	0.00	1.52

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
0	1	4.339247	GGGCTTGCTACATTCATGTATGTT	59.661	41.667	21.11	7.69	41.92	2.71
63	64	7.334171	GGGATTATTTGTTGTTTTTCTCATGGG	59.666	37.037	0.00	0.00	0.00	4.00
128	134	3.818180	TGGGTTGGTACGTGTGTAAAAT	58.182	40.909	0.00	0.00	30.94	1.82
142	148	3.131046	GGCTGTATTTCATCTTGGGTTGG	59.869	47.826	0.00	0.00	0.00	3.77
166	180	6.100004	GTCTCAAACATGGTTTATCTCTCGA	58.900	40.000	0.00	0.00	0.00	4.04
197	1607	3.307480	GGCCCTTCTACTAGCTGTTTTCA	60.307	47.826	0.00	0.00	0.00	2.69
199	1609	2.026169	GGGCCCTTCTACTAGCTGTTTT	60.026	50.000	17.04	0.00	0.00	2.43
245	1656	3.007635	GTTCGGATTTGGGAACTAGGTG	58.992	50.000	0.00	0.00	39.48	4.00
279	1690	1.605058	GCTGTTGGAGCGACCCTCTA	61.605	60.000	0.00	0.00	40.57	2.43
314	1726	0.826715	TCTAGCTTTGCTCATCGCCT	59.173	50.000	0.00	0.00	40.44	5.52
343	1755	1.611491	CGTGGTGGCAATTAACTGGTT	59.389	47.619	0.00	0.00	0.00	3.67
362	1776	1.012086	CCACAGGAGATGTTGATGCG	58.988	55.000	0.00	0.00	41.41	4.73
424	1850	2.294791	CGTGGCAGGTGGAATTGTTTTA	59.705	45.455	0.00	0.00	0.00	1.52
512	1984	2.835895	GACCGGAGAGGAGGAGGC	60.836	72.222	9.46	0.00	45.00	4.70
526	2034	1.296056	CGATGTGGTTTGGACGGACC	61.296	60.000	0.00	0.00	39.54	4.46
660	3742	3.190337	CCGTCGGAATAATCGGGTC	57.810	57.895	4.91	0.00	39.41	4.46
701	3783	3.809374	GACGGCGGGTGATGGATCC	62.809	68.421	13.24	4.20	0.00	3.36
850	5521	3.578272	GTGTGTGGTTCGCGGCAA	61.578	61.111	6.13	0.00	0.00	4.52
870	5552	2.154462	CCAATCCAGAGGTGTGTGTTC	58.846	52.381	0.00	0.00	0.00	3.18
871	5553	1.819305	GCCAATCCAGAGGTGTGTGTT	60.819	52.381	0.00	0.00	0.00	3.32
930	5626	2.742372	CGCTGGTGGTGGTGCTAC	60.742	66.667	0.00	0.00	0.00	3.58
1014	5722	1.990060	CTTCCCCCTCTTCTCCGCA	60.990	63.158	0.00	0.00	0.00	5.69
1158	5893	3.814268	TAGCCGTACGTGTCCCGC	61.814	66.667	15.21	9.15	41.42	6.13
1246	5981	3.842923	CGAGTGCGCCATCTCCCT	61.843	66.667	4.18	0.00	0.00	4.20
1404	6187	2.431601	GCGCTCTCGTTGCTCTGT	60.432	61.111	0.00	0.00	38.14	3.41
1513	6439	1.072159	ACCAACTGCTGCCTCTCAC	59.928	57.895	0.00	0.00	0.00	3.51
1548	6521	1.680522	CTATGCCAGCTCTCACCGGT	61.681	60.000	0.00	0.00	0.00	5.28
1687	6682	0.401738	TCCCCTTGCTCTTGTCTTGG	59.598	55.000	0.00	0.00	0.00	3.61
1688	6683	2.157738	CTTCCCCTTGCTCTTGTCTTG	58.842	52.381	0.00	0.00	0.00	3.02
1689	6684	1.777272	ACTTCCCCTTGCTCTTGTCTT	59.223	47.619	0.00	0.00	0.00	3.01
1690	6685	1.439543	ACTTCCCCTTGCTCTTGTCT	58.560	50.000	0.00	0.00	0.00	3.41
1691	6686	2.278332	AACTTCCCCTTGCTCTTGTC	57.722	50.000	0.00	0.00	0.00	3.18
1692	6687	3.138468	AGTTAACTTCCCCTTGCTCTTGT	59.862	43.478	1.12	0.00	0.00	3.16
1693	6688	3.756117	AGTTAACTTCCCCTTGCTCTTG	58.244	45.455	1.12	0.00	0.00	3.02
1694	6689	4.597940	ACTAGTTAACTTCCCCTTGCTCTT	59.402	41.667	14.49	0.00	0.00	2.85
1695	6690	4.020128	CACTAGTTAACTTCCCCTTGCTCT	60.020	45.833	14.49	0.00	0.00	4.09
1696	6691	4.020485	TCACTAGTTAACTTCCCCTTGCTC	60.020	45.833	14.49	0.00	0.00	4.26
1697	6692	3.908103	TCACTAGTTAACTTCCCCTTGCT	59.092	43.478	14.49	0.00	0.00	3.91
1698	6693	4.254492	CTCACTAGTTAACTTCCCCTTGC	58.746	47.826	14.49	0.00	0.00	4.01
1699	6694	4.020128	AGCTCACTAGTTAACTTCCCCTTG	60.020	45.833	14.49	2.93	0.00	3.61
1700	6695	4.168883	AGCTCACTAGTTAACTTCCCCTT	58.831	43.478	14.49	0.00	0.00	3.95
1701	6696	3.792515	AGCTCACTAGTTAACTTCCCCT	58.207	45.455	14.49	0.85	0.00	4.79
1702	6697	4.554960	AAGCTCACTAGTTAACTTCCCC	57.445	45.455	14.49	0.00	0.00	4.81
1703	6698	6.034161	TGTAAGCTCACTAGTTAACTTCCC	57.966	41.667	14.49	0.00	0.00	3.97
1704	6699	7.583860	CTTGTAAGCTCACTAGTTAACTTCC	57.416	40.000	14.49	0.00	0.00	3.46
1721	6716	0.951558	AAACACGCCAGGCTTGTAAG	59.048	50.000	23.23	1.85	40.04	2.34
1722	6717	0.665835	CAAACACGCCAGGCTTGTAA	59.334	50.000	23.23	0.00	40.04	2.41
1723	6718	0.464735	ACAAACACGCCAGGCTTGTA	60.465	50.000	23.23	0.00	40.04	2.41
1724	6719	1.724582	GACAAACACGCCAGGCTTGT	61.725	55.000	17.83	17.83	42.66	3.16
1725	6720	1.008538	GACAAACACGCCAGGCTTG	60.009	57.895	16.37	16.37	33.94	4.01
1726	6721	1.447317	CTGACAAACACGCCAGGCTT	61.447	55.000	10.54	0.00	0.00	4.35
1727	6722	1.893808	CTGACAAACACGCCAGGCT	60.894	57.895	10.54	0.00	0.00	4.58
1977	7194	2.428925	CGGCGGCTAGGGTTAGGAA	61.429	63.158	7.61	0.00	0.00	3.36
2073	7311	4.218686	AAAACAGGCCGGGGCACT	62.219	61.111	23.67	3.61	44.11	4.40
2089	7327	2.638354	TAGGGACCGAAAGCGCGAA	61.638	57.895	12.10	0.00	35.83	4.70
2128	7366	3.580319	GACCTTGCCACCCCCAGT	61.580	66.667	0.00	0.00	0.00	4.00
2140	7378	2.280592	GACGTGCAACCGGACCTT	60.281	61.111	9.46	0.00	0.00	3.50
2141	7379	3.222354	GAGACGTGCAACCGGACCT	62.222	63.158	9.46	0.00	0.00	3.85
2233	8642	6.098552	AGTTAAGGCCAATAGTAGGAGAAGAC	59.901	42.308	5.01	0.00	0.00	3.01
2249	8658	6.998673	ACACTGGATATTATCAAGTTAAGGCC	59.001	38.462	10.50	0.00	40.68	5.19

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.