Multiple sequence alignment - TraesCS6B01G359700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G359700 chr6B 100.000 2354 0 0 1 2354 631535815 631533462 0.000000e+00 4348
1 TraesCS6B01G359700 chr6B 83.265 1219 90 57 193 1383 631192625 631193757 0.000000e+00 1016
2 TraesCS6B01G359700 chr6B 84.653 1023 76 31 736 1733 631741313 631740347 0.000000e+00 944
3 TraesCS6B01G359700 chr6B 84.513 749 76 18 809 1543 631844096 631843374 0.000000e+00 704
4 TraesCS6B01G359700 chr6B 82.718 515 30 21 195 702 631741778 631741316 1.010000e-108 403
5 TraesCS6B01G359700 chr6B 97.209 215 6 0 2140 2354 23437785 23437571 4.780000e-97 364
6 TraesCS6B01G359700 chr6B 80.651 522 53 26 193 711 631247029 631246553 6.180000e-96 361
7 TraesCS6B01G359700 chr6B 83.046 348 34 14 194 521 631846261 631845919 2.290000e-75 292
8 TraesCS6B01G359700 chr6B 84.277 159 13 7 1562 1712 631843381 631843227 6.780000e-31 145
9 TraesCS6B01G359700 chr6B 85.827 127 12 4 1 121 127025808 127025682 1.900000e-26 130
10 TraesCS6B01G359700 chr6B 83.704 135 14 7 2 130 136128949 136128817 1.140000e-23 121
11 TraesCS6B01G359700 chr6D 83.890 1825 147 43 193 1956 418883701 418881963 0.000000e+00 1605
12 TraesCS6B01G359700 chr6D 81.521 1223 113 56 193 1383 418770705 418769564 0.000000e+00 902
13 TraesCS6B01G359700 chr6D 87.479 583 36 14 830 1383 418732811 418733385 2.550000e-179 638
14 TraesCS6B01G359700 chr6D 86.214 486 39 20 193 667 418732261 418732729 3.490000e-138 501
15 TraesCS6B01G359700 chr6D 94.444 72 2 2 126 195 418880351 418880280 2.470000e-20 110
16 TraesCS6B01G359700 chr6A 84.072 1601 134 57 193 1761 562471244 562469733 0.000000e+00 1432
17 TraesCS6B01G359700 chr6A 83.769 1454 138 37 535 1956 562250437 562251824 0.000000e+00 1288
18 TraesCS6B01G359700 chr6A 82.026 1402 116 68 193 1539 562271230 562272550 0.000000e+00 1068
19 TraesCS6B01G359700 chr6A 86.216 740 55 19 681 1383 562400794 562400065 0.000000e+00 758
20 TraesCS6B01G359700 chr6A 82.953 833 83 26 613 1411 562488261 562487454 0.000000e+00 697
21 TraesCS6B01G359700 chr6A 88.000 325 19 12 193 503 562249693 562250011 1.330000e-97 366
22 TraesCS6B01G359700 chr6A 85.409 281 22 12 392 667 562402220 562401954 8.290000e-70 274
23 TraesCS6B01G359700 chr2B 98.140 215 4 0 2140 2354 747108684 747108470 2.210000e-100 375
24 TraesCS6B01G359700 chr3B 97.222 216 6 0 2139 2354 792775748 792775963 1.330000e-97 366
25 TraesCS6B01G359700 chr5B 97.209 215 6 0 2140 2354 548234077 548234291 4.780000e-97 364
26 TraesCS6B01G359700 chr5B 93.750 192 9 2 1948 2139 303418713 303418901 3.830000e-73 285
27 TraesCS6B01G359700 chr5B 90.385 104 8 2 1 102 249496068 249496171 4.080000e-28 135
28 TraesCS6B01G359700 chr5B 85.600 125 12 5 1 119 587112467 587112591 2.460000e-25 126
29 TraesCS6B01G359700 chr4B 97.209 215 6 0 2140 2354 3877097 3876883 4.780000e-97 364
30 TraesCS6B01G359700 chr4B 97.630 211 5 0 2140 2350 65611551 65611761 1.720000e-96 363
31 TraesCS6B01G359700 chr4B 86.400 125 11 4 1 119 565731041 565731165 5.280000e-27 132
32 TraesCS6B01G359700 chr4B 85.271 129 12 4 1 123 602188797 602188924 2.460000e-25 126
33 TraesCS6B01G359700 chr7B 96.347 219 8 0 2136 2354 713626284 713626066 6.180000e-96 361
34 TraesCS6B01G359700 chr7B 85.600 125 12 4 1 119 327811723 327811599 2.460000e-25 126
35 TraesCS6B01G359700 chr1B 96.759 216 7 0 2139 2354 23595155 23594940 6.180000e-96 361
36 TraesCS6B01G359700 chr1B 96.759 216 7 0 2139 2354 653692171 653692386 6.180000e-96 361
37 TraesCS6B01G359700 chr4A 95.288 191 5 3 1951 2139 714853825 714854013 1.370000e-77 300
38 TraesCS6B01G359700 chr4D 94.652 187 9 1 1953 2139 466342160 466341975 2.960000e-74 289
39 TraesCS6B01G359700 chr4D 94.624 186 10 0 1954 2139 485513269 485513454 2.960000e-74 289
40 TraesCS6B01G359700 chr2D 95.109 184 8 1 1956 2139 83826753 83826935 2.960000e-74 289
41 TraesCS6B01G359700 chr2D 85.039 127 13 5 1 121 596206895 596207021 8.830000e-25 124
42 TraesCS6B01G359700 chr5D 94.595 185 8 2 1955 2139 41583231 41583413 3.830000e-73 285
43 TraesCS6B01G359700 chr3D 94.595 185 8 2 1955 2139 18993109 18992927 3.830000e-73 285
44 TraesCS6B01G359700 chr1D 94.149 188 10 1 1953 2139 457812925 457813112 3.830000e-73 285
45 TraesCS6B01G359700 chrUn 92.821 195 10 4 1945 2139 311387511 311387701 1.780000e-71 279
46 TraesCS6B01G359700 chr7D 86.400 125 11 4 1 119 125724503 125724379 5.280000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G359700 chr6B 631533462 631535815 2353 True 4348.000000 4348 100.000000 1 2354 1 chr6B.!!$R5 2353
1 TraesCS6B01G359700 chr6B 631192625 631193757 1132 False 1016.000000 1016 83.265000 193 1383 1 chr6B.!!$F1 1190
2 TraesCS6B01G359700 chr6B 631740347 631741778 1431 True 673.500000 944 83.685500 195 1733 2 chr6B.!!$R6 1538
3 TraesCS6B01G359700 chr6B 631843227 631846261 3034 True 380.333333 704 83.945333 194 1712 3 chr6B.!!$R7 1518
4 TraesCS6B01G359700 chr6D 418769564 418770705 1141 True 902.000000 902 81.521000 193 1383 1 chr6D.!!$R1 1190
5 TraesCS6B01G359700 chr6D 418880280 418883701 3421 True 857.500000 1605 89.167000 126 1956 2 chr6D.!!$R2 1830
6 TraesCS6B01G359700 chr6D 418732261 418733385 1124 False 569.500000 638 86.846500 193 1383 2 chr6D.!!$F1 1190
7 TraesCS6B01G359700 chr6A 562469733 562471244 1511 True 1432.000000 1432 84.072000 193 1761 1 chr6A.!!$R1 1568
8 TraesCS6B01G359700 chr6A 562271230 562272550 1320 False 1068.000000 1068 82.026000 193 1539 1 chr6A.!!$F1 1346
9 TraesCS6B01G359700 chr6A 562249693 562251824 2131 False 827.000000 1288 85.884500 193 1956 2 chr6A.!!$F2 1763
10 TraesCS6B01G359700 chr6A 562487454 562488261 807 True 697.000000 697 82.953000 613 1411 1 chr6A.!!$R2 798
11 TraesCS6B01G359700 chr6A 562400065 562402220 2155 True 516.000000 758 85.812500 392 1383 2 chr6A.!!$R3 991

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.027716 CATCTCACCTCCGTACGACG 59.972 60.0 18.76 6.82 42.11 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2080 5406 0.040425 CCACGTGTTGGCACTTTAGC 60.04 55.0 15.65 0.0 43.16 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.716195 CCACCGCATCCCAGGACA 61.716 66.667 0.00 0.00 0.00 4.02
36 37 2.124983 CACCGCATCCCAGGACAG 60.125 66.667 0.00 0.00 0.00 3.51
37 38 3.402681 ACCGCATCCCAGGACAGG 61.403 66.667 0.00 0.00 0.00 4.00
38 39 3.402681 CCGCATCCCAGGACAGGT 61.403 66.667 0.00 0.00 0.00 4.00
39 40 2.187946 CGCATCCCAGGACAGGTC 59.812 66.667 0.00 0.00 0.00 3.85
40 41 2.362369 CGCATCCCAGGACAGGTCT 61.362 63.158 0.00 0.00 0.00 3.85
41 42 1.222936 GCATCCCAGGACAGGTCTG 59.777 63.158 0.00 0.00 0.00 3.51
48 49 1.763968 CAGGACAGGTCTGGATACGA 58.236 55.000 2.87 0.00 42.51 3.43
49 50 2.311463 CAGGACAGGTCTGGATACGAT 58.689 52.381 2.87 0.00 42.51 3.73
50 51 2.294791 CAGGACAGGTCTGGATACGATC 59.705 54.545 2.87 0.00 42.51 3.69
61 62 2.100605 GATACGATCCAATCCCCTGC 57.899 55.000 0.00 0.00 0.00 4.85
62 63 0.693049 ATACGATCCAATCCCCTGCC 59.307 55.000 0.00 0.00 0.00 4.85
63 64 0.692756 TACGATCCAATCCCCTGCCA 60.693 55.000 0.00 0.00 0.00 4.92
64 65 1.227102 CGATCCAATCCCCTGCCAA 59.773 57.895 0.00 0.00 0.00 4.52
65 66 0.395586 CGATCCAATCCCCTGCCAAA 60.396 55.000 0.00 0.00 0.00 3.28
66 67 1.114627 GATCCAATCCCCTGCCAAAC 58.885 55.000 0.00 0.00 0.00 2.93
67 68 0.684153 ATCCAATCCCCTGCCAAACG 60.684 55.000 0.00 0.00 0.00 3.60
68 69 2.350458 CCAATCCCCTGCCAAACGG 61.350 63.158 0.00 0.00 0.00 4.44
69 70 1.304052 CAATCCCCTGCCAAACGGA 60.304 57.895 0.00 0.00 0.00 4.69
70 71 0.684153 CAATCCCCTGCCAAACGGAT 60.684 55.000 0.00 0.00 36.66 4.18
71 72 0.923358 AATCCCCTGCCAAACGGATA 59.077 50.000 0.00 0.00 33.92 2.59
72 73 0.474184 ATCCCCTGCCAAACGGATAG 59.526 55.000 0.00 0.00 33.26 2.08
73 74 0.619255 TCCCCTGCCAAACGGATAGA 60.619 55.000 0.00 0.00 0.00 1.98
74 75 0.254747 CCCCTGCCAAACGGATAGAA 59.745 55.000 0.00 0.00 0.00 2.10
75 76 1.133792 CCCCTGCCAAACGGATAGAAT 60.134 52.381 0.00 0.00 0.00 2.40
76 77 2.222027 CCCTGCCAAACGGATAGAATC 58.778 52.381 0.00 0.00 0.00 2.52
77 78 2.222027 CCTGCCAAACGGATAGAATCC 58.778 52.381 0.00 0.00 46.22 3.01
104 105 3.351416 GGACGTCCGTTTGGGCAC 61.351 66.667 20.85 0.00 41.18 5.01
105 106 3.708734 GACGTCCGTTTGGGCACG 61.709 66.667 3.51 0.00 41.18 5.34
111 112 3.353836 CGTTTGGGCACGGTGGAG 61.354 66.667 10.60 0.00 36.47 3.86
112 113 2.203294 GTTTGGGCACGGTGGAGT 60.203 61.111 10.60 0.00 0.00 3.85
113 114 1.826487 GTTTGGGCACGGTGGAGTT 60.826 57.895 10.60 0.00 0.00 3.01
114 115 0.535553 GTTTGGGCACGGTGGAGTTA 60.536 55.000 10.60 0.00 0.00 2.24
115 116 0.250553 TTTGGGCACGGTGGAGTTAG 60.251 55.000 10.60 0.00 0.00 2.34
116 117 2.436115 GGGCACGGTGGAGTTAGC 60.436 66.667 10.60 0.00 0.00 3.09
117 118 2.436115 GGCACGGTGGAGTTAGCC 60.436 66.667 10.60 0.00 34.71 3.93
118 119 2.663196 GCACGGTGGAGTTAGCCT 59.337 61.111 10.60 0.00 0.00 4.58
119 120 1.448013 GCACGGTGGAGTTAGCCTC 60.448 63.158 10.60 0.00 39.67 4.70
120 121 1.972198 CACGGTGGAGTTAGCCTCA 59.028 57.895 0.00 0.00 42.40 3.86
121 122 0.320374 CACGGTGGAGTTAGCCTCAA 59.680 55.000 0.00 0.00 42.40 3.02
122 123 1.066143 CACGGTGGAGTTAGCCTCAAT 60.066 52.381 0.00 0.00 42.40 2.57
123 124 2.167693 CACGGTGGAGTTAGCCTCAATA 59.832 50.000 0.00 0.00 42.40 1.90
124 125 2.431057 ACGGTGGAGTTAGCCTCAATAG 59.569 50.000 0.00 0.00 42.40 1.73
125 126 2.803492 CGGTGGAGTTAGCCTCAATAGC 60.803 54.545 0.00 0.00 42.40 2.97
126 127 2.474816 GTGGAGTTAGCCTCAATAGCG 58.525 52.381 0.00 0.00 42.40 4.26
127 128 2.108168 TGGAGTTAGCCTCAATAGCGT 58.892 47.619 0.00 0.00 42.40 5.07
128 129 2.100916 TGGAGTTAGCCTCAATAGCGTC 59.899 50.000 0.00 0.00 42.40 5.19
129 130 2.100916 GGAGTTAGCCTCAATAGCGTCA 59.899 50.000 0.00 0.00 42.40 4.35
130 131 3.243907 GGAGTTAGCCTCAATAGCGTCAT 60.244 47.826 0.00 0.00 42.40 3.06
131 132 3.983741 AGTTAGCCTCAATAGCGTCATC 58.016 45.455 0.00 0.00 34.64 2.92
132 133 3.060602 GTTAGCCTCAATAGCGTCATCC 58.939 50.000 0.00 0.00 34.64 3.51
133 134 1.123077 AGCCTCAATAGCGTCATCCA 58.877 50.000 0.00 0.00 34.64 3.41
134 135 1.696336 AGCCTCAATAGCGTCATCCAT 59.304 47.619 0.00 0.00 34.64 3.41
135 136 2.072298 GCCTCAATAGCGTCATCCATC 58.928 52.381 0.00 0.00 0.00 3.51
136 137 2.289320 GCCTCAATAGCGTCATCCATCT 60.289 50.000 0.00 0.00 0.00 2.90
137 138 3.583806 CCTCAATAGCGTCATCCATCTC 58.416 50.000 0.00 0.00 0.00 2.75
138 139 3.006217 CCTCAATAGCGTCATCCATCTCA 59.994 47.826 0.00 0.00 0.00 3.27
139 140 3.982475 TCAATAGCGTCATCCATCTCAC 58.018 45.455 0.00 0.00 0.00 3.51
140 141 3.062763 CAATAGCGTCATCCATCTCACC 58.937 50.000 0.00 0.00 0.00 4.02
141 142 2.073252 TAGCGTCATCCATCTCACCT 57.927 50.000 0.00 0.00 0.00 4.00
142 143 0.749649 AGCGTCATCCATCTCACCTC 59.250 55.000 0.00 0.00 0.00 3.85
143 144 0.249657 GCGTCATCCATCTCACCTCC 60.250 60.000 0.00 0.00 0.00 4.30
144 145 0.031314 CGTCATCCATCTCACCTCCG 59.969 60.000 0.00 0.00 0.00 4.63
145 146 1.115467 GTCATCCATCTCACCTCCGT 58.885 55.000 0.00 0.00 0.00 4.69
146 147 2.307768 GTCATCCATCTCACCTCCGTA 58.692 52.381 0.00 0.00 0.00 4.02
147 148 2.034812 GTCATCCATCTCACCTCCGTAC 59.965 54.545 0.00 0.00 0.00 3.67
148 149 1.001268 CATCCATCTCACCTCCGTACG 60.001 57.143 8.69 8.69 0.00 3.67
149 150 0.253894 TCCATCTCACCTCCGTACGA 59.746 55.000 18.76 1.79 0.00 3.43
150 151 0.381089 CCATCTCACCTCCGTACGAC 59.619 60.000 18.76 0.00 0.00 4.34
151 152 0.027716 CATCTCACCTCCGTACGACG 59.972 60.000 18.76 6.82 42.11 5.12
161 162 4.067913 GTACGACGGCCGGGGAAA 62.068 66.667 31.76 7.81 43.93 3.13
162 163 3.309506 TACGACGGCCGGGGAAAA 61.310 61.111 31.76 6.59 43.93 2.29
163 164 3.299524 TACGACGGCCGGGGAAAAG 62.300 63.158 31.76 13.97 43.93 2.27
164 165 4.382320 CGACGGCCGGGGAAAAGA 62.382 66.667 31.76 0.00 33.91 2.52
165 166 2.032987 GACGGCCGGGGAAAAGAA 59.967 61.111 31.76 0.00 0.00 2.52
166 167 1.601477 GACGGCCGGGGAAAAGAAA 60.601 57.895 31.76 0.00 0.00 2.52
167 168 1.152715 ACGGCCGGGGAAAAGAAAA 60.153 52.632 31.76 0.00 0.00 2.29
168 169 0.541063 ACGGCCGGGGAAAAGAAAAT 60.541 50.000 31.76 0.00 0.00 1.82
169 170 0.108851 CGGCCGGGGAAAAGAAAATG 60.109 55.000 20.10 0.00 0.00 2.32
170 171 0.391130 GGCCGGGGAAAAGAAAATGC 60.391 55.000 2.18 0.00 0.00 3.56
171 172 0.320050 GCCGGGGAAAAGAAAATGCA 59.680 50.000 2.18 0.00 0.00 3.96
172 173 1.066215 GCCGGGGAAAAGAAAATGCAT 60.066 47.619 2.18 0.00 0.00 3.96
173 174 2.892374 CCGGGGAAAAGAAAATGCATC 58.108 47.619 0.00 0.00 0.00 3.91
174 175 2.529151 CGGGGAAAAGAAAATGCATCG 58.471 47.619 0.00 0.00 0.00 3.84
175 176 2.735126 CGGGGAAAAGAAAATGCATCGG 60.735 50.000 0.00 0.00 0.00 4.18
176 177 2.270923 GGGAAAAGAAAATGCATCGGC 58.729 47.619 0.00 0.00 41.68 5.54
315 327 4.314440 GTGGGGCAGCAGTCACGA 62.314 66.667 0.00 0.00 0.00 4.35
319 331 2.607892 GGGCAGCAGTCACGAACAC 61.608 63.158 0.00 0.00 0.00 3.32
320 332 1.887242 GGCAGCAGTCACGAACACA 60.887 57.895 0.00 0.00 0.00 3.72
321 333 1.230635 GGCAGCAGTCACGAACACAT 61.231 55.000 0.00 0.00 0.00 3.21
322 334 0.110509 GCAGCAGTCACGAACACATG 60.111 55.000 0.00 0.00 0.00 3.21
323 335 0.110509 CAGCAGTCACGAACACATGC 60.111 55.000 0.00 0.00 0.00 4.06
324 336 1.207593 GCAGTCACGAACACATGCC 59.792 57.895 0.00 0.00 0.00 4.40
325 337 1.506309 GCAGTCACGAACACATGCCA 61.506 55.000 0.00 0.00 0.00 4.92
332 347 1.582968 GAACACATGCCAGTGCCAG 59.417 57.895 5.62 0.00 43.23 4.85
352 367 1.669115 CCTCCCGCTCACACAACTG 60.669 63.158 0.00 0.00 0.00 3.16
353 368 1.367471 CTCCCGCTCACACAACTGA 59.633 57.895 0.00 0.00 0.00 3.41
362 377 3.786048 GCTCACACAACTGAAAGAAAACG 59.214 43.478 0.00 0.00 37.43 3.60
503 560 0.601576 CGTCCGTCCAAACCACATCA 60.602 55.000 0.00 0.00 0.00 3.07
504 561 1.156736 GTCCGTCCAAACCACATCAG 58.843 55.000 0.00 0.00 0.00 2.90
635 2272 1.068417 CGATTATTCCGACGGGCCA 59.932 57.895 15.25 0.00 0.00 5.36
670 3459 1.198094 ACACGATCCATCACCCACCA 61.198 55.000 0.00 0.00 0.00 4.17
671 3460 0.744414 CACGATCCATCACCCACCAC 60.744 60.000 0.00 0.00 0.00 4.16
674 3463 0.394352 GATCCATCACCCACCACACC 60.394 60.000 0.00 0.00 0.00 4.16
676 3465 2.538141 CCATCACCCACCACACCCT 61.538 63.158 0.00 0.00 0.00 4.34
690 3479 3.081409 CCCTTCCCGACCCGACAT 61.081 66.667 0.00 0.00 0.00 3.06
703 3493 2.668632 GACATGGAAGCCCCGACA 59.331 61.111 0.00 0.00 37.93 4.35
780 3586 3.395669 GCACCGGCGACTAATCAC 58.604 61.111 9.30 0.00 0.00 3.06
781 3587 1.153628 GCACCGGCGACTAATCACT 60.154 57.895 9.30 0.00 0.00 3.41
782 3588 0.739813 GCACCGGCGACTAATCACTT 60.740 55.000 9.30 0.00 0.00 3.16
804 3966 8.869109 CACTTATCTAATCTTCCAATCTCCTCT 58.131 37.037 0.00 0.00 0.00 3.69
809 3971 0.105778 CTTCCAATCTCCTCTCGGCC 59.894 60.000 0.00 0.00 0.00 6.13
810 3972 1.338136 TTCCAATCTCCTCTCGGCCC 61.338 60.000 0.00 0.00 0.00 5.80
811 3973 2.419198 CAATCTCCTCTCGGCCCG 59.581 66.667 0.00 0.00 0.00 6.13
812 3974 3.541713 AATCTCCTCTCGGCCCGC 61.542 66.667 0.00 0.00 0.00 6.13
813 3975 4.841617 ATCTCCTCTCGGCCCGCA 62.842 66.667 0.00 0.00 0.00 5.69
843 4019 5.076873 AGCCTTGCAAGTCCTATAAAAACA 58.923 37.500 24.35 0.00 0.00 2.83
1010 4227 1.325355 GTCATCATCATGCAAGGGGG 58.675 55.000 0.00 0.00 0.00 5.40
1110 4354 4.143333 AGGCGGTTCGTCATCCCG 62.143 66.667 0.00 0.00 44.46 5.14
1132 4376 1.380920 GCCTACCTCTACCACCCGT 60.381 63.158 0.00 0.00 0.00 5.28
1173 4417 3.087906 GCCCGGGACACCTATGGT 61.088 66.667 29.31 0.00 35.62 3.55
1231 4475 2.600769 ACGAGTTCCTCCGCCTGT 60.601 61.111 0.00 0.00 0.00 4.00
1273 4520 2.807045 CACACTCGCACTCCTCGC 60.807 66.667 0.00 0.00 0.00 5.03
1322 4593 0.102120 CAGCAGAGCTACTCCTTCGG 59.898 60.000 0.00 0.00 36.40 4.30
1361 4632 1.725557 ATCACGTCCTGATCGACCCG 61.726 60.000 0.00 0.00 34.07 5.28
1366 4637 1.455773 TCCTGATCGACCCGCATCT 60.456 57.895 0.00 0.00 0.00 2.90
1462 4751 2.202987 CCTGCCGGAGATGACAGC 60.203 66.667 5.05 0.00 0.00 4.40
1466 4755 2.202987 CCGGAGATGACAGCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
1522 4811 5.513441 GGAGAGAGATACCAGATACGGAGAA 60.513 48.000 0.00 0.00 0.00 2.87
1544 4833 1.411977 CATGAGAGGCAGTCAGTAGGG 59.588 57.143 0.00 0.00 0.00 3.53
1545 4834 0.409876 TGAGAGGCAGTCAGTAGGGT 59.590 55.000 0.00 0.00 0.00 4.34
1546 4835 1.203187 TGAGAGGCAGTCAGTAGGGTT 60.203 52.381 0.00 0.00 0.00 4.11
1547 4836 1.903183 GAGAGGCAGTCAGTAGGGTTT 59.097 52.381 0.00 0.00 0.00 3.27
1548 4837 2.303311 GAGAGGCAGTCAGTAGGGTTTT 59.697 50.000 0.00 0.00 0.00 2.43
1549 4838 2.711547 AGAGGCAGTCAGTAGGGTTTTT 59.288 45.455 0.00 0.00 0.00 1.94
1660 4976 1.002134 AGGTGGCCTGATGAAACCG 60.002 57.895 3.32 0.00 35.99 4.44
1685 5003 7.013846 CGGTAGGCTTTTGGATATATTTTTCCA 59.986 37.037 0.00 0.00 40.24 3.53
1738 5060 1.074889 TCAAAGGGGAAGTTAGGGCAC 59.925 52.381 0.00 0.00 0.00 5.01
1761 5083 2.565391 TCTAACGCTCATCTCCAAACCA 59.435 45.455 0.00 0.00 0.00 3.67
1767 5089 2.029918 GCTCATCTCCAAACCAAACACC 60.030 50.000 0.00 0.00 0.00 4.16
1770 5092 1.384525 TCTCCAAACCAAACACCACG 58.615 50.000 0.00 0.00 0.00 4.94
1772 5094 1.474879 CTCCAAACCAAACACCACGTT 59.525 47.619 0.00 0.00 40.50 3.99
1828 5153 2.295885 GGATTGAGCTGACCATCCAAG 58.704 52.381 0.00 0.00 0.00 3.61
1836 5161 2.168521 GCTGACCATCCAAGTGTAGCTA 59.831 50.000 0.00 0.00 0.00 3.32
1841 5166 5.423931 TGACCATCCAAGTGTAGCTACATAA 59.576 40.000 28.37 13.12 38.63 1.90
1850 5175 9.906660 CCAAGTGTAGCTACATAAATTTCAAAA 57.093 29.630 28.37 0.00 38.63 2.44
1903 5228 3.740044 ACGCGACGAAATTCATCAAAT 57.260 38.095 15.93 0.00 0.00 2.32
1906 5231 4.915085 ACGCGACGAAATTCATCAAATTTT 59.085 33.333 15.93 0.00 45.47 1.82
1956 5282 9.786105 CATAAATAACATGCAAATGTGTCTACA 57.214 29.630 0.00 0.00 41.89 2.74
1957 5283 9.787532 ATAAATAACATGCAAATGTGTCTACAC 57.212 29.630 6.29 6.29 46.59 2.90
1958 5284 7.452880 AATAACATGCAAATGTGTCTACACT 57.547 32.000 13.95 0.00 46.55 3.55
1960 5286 6.486253 AACATGCAAATGTGTCTACACTAG 57.514 37.500 13.95 0.00 46.55 2.57
1962 5288 5.409520 ACATGCAAATGTGTCTACACTAGTG 59.590 40.000 21.44 21.44 46.55 2.74
1963 5289 3.745975 TGCAAATGTGTCTACACTAGTGC 59.254 43.478 22.90 19.54 46.55 4.40
1964 5290 3.745975 GCAAATGTGTCTACACTAGTGCA 59.254 43.478 22.90 9.40 46.55 4.57
1965 5291 4.143030 GCAAATGTGTCTACACTAGTGCAG 60.143 45.833 22.90 19.23 46.55 4.41
1966 5292 5.230182 CAAATGTGTCTACACTAGTGCAGA 58.770 41.667 22.90 21.30 46.55 4.26
1967 5293 5.468540 AATGTGTCTACACTAGTGCAGAA 57.531 39.130 24.31 11.98 46.55 3.02
1968 5294 4.238761 TGTGTCTACACTAGTGCAGAAC 57.761 45.455 24.31 21.91 46.55 3.01
1971 5297 3.255888 TGTCTACACTAGTGCAGAACCAG 59.744 47.826 24.31 10.16 35.00 4.00
1972 5298 2.826128 TCTACACTAGTGCAGAACCAGG 59.174 50.000 21.21 0.00 30.54 4.45
1973 5299 0.035458 ACACTAGTGCAGAACCAGGC 59.965 55.000 22.90 0.00 0.00 4.85
1974 5300 0.322975 CACTAGTGCAGAACCAGGCT 59.677 55.000 10.54 0.00 0.00 4.58
1975 5301 1.059913 ACTAGTGCAGAACCAGGCTT 58.940 50.000 0.00 0.00 0.00 4.35
1976 5302 1.421646 ACTAGTGCAGAACCAGGCTTT 59.578 47.619 0.00 0.00 0.00 3.51
1977 5303 2.637872 ACTAGTGCAGAACCAGGCTTTA 59.362 45.455 0.00 0.00 0.00 1.85
1979 5305 0.523519 GTGCAGAACCAGGCTTTAGC 59.476 55.000 0.00 0.00 41.14 3.09
1981 5307 1.796796 CAGAACCAGGCTTTAGCGC 59.203 57.895 0.00 0.00 43.26 5.92
1989 5315 3.116531 GCTTTAGCGCCGGTTCGT 61.117 61.111 2.29 0.00 0.00 3.85
1991 5317 1.353609 GCTTTAGCGCCGGTTCGTAA 61.354 55.000 2.29 0.00 0.00 3.18
1992 5318 1.283736 CTTTAGCGCCGGTTCGTAAT 58.716 50.000 2.29 0.00 0.00 1.89
1993 5319 1.000884 TTTAGCGCCGGTTCGTAATG 58.999 50.000 2.29 0.00 0.00 1.90
1994 5320 0.806884 TTAGCGCCGGTTCGTAATGG 60.807 55.000 2.29 0.00 0.00 3.16
1995 5321 1.947597 TAGCGCCGGTTCGTAATGGT 61.948 55.000 2.29 0.00 0.00 3.55
1996 5322 2.805807 GCGCCGGTTCGTAATGGTC 61.806 63.158 1.90 0.00 0.00 4.02
1997 5323 1.153706 CGCCGGTTCGTAATGGTCT 60.154 57.895 1.90 0.00 0.00 3.85
1999 5325 1.445871 GCCGGTTCGTAATGGTCTTT 58.554 50.000 1.90 0.00 0.00 2.52
2001 5327 2.606272 GCCGGTTCGTAATGGTCTTTAG 59.394 50.000 1.90 0.00 0.00 1.85
2003 5329 3.615496 CCGGTTCGTAATGGTCTTTAGTG 59.385 47.826 0.00 0.00 0.00 2.74
2004 5330 3.061697 CGGTTCGTAATGGTCTTTAGTGC 59.938 47.826 0.00 0.00 0.00 4.40
2005 5331 3.373130 GGTTCGTAATGGTCTTTAGTGCC 59.627 47.826 0.00 0.00 0.00 5.01
2006 5332 2.883574 TCGTAATGGTCTTTAGTGCCG 58.116 47.619 0.00 0.00 0.00 5.69
2007 5333 1.931172 CGTAATGGTCTTTAGTGCCGG 59.069 52.381 0.00 0.00 0.00 6.13
2008 5334 2.675889 CGTAATGGTCTTTAGTGCCGGT 60.676 50.000 1.90 0.00 0.00 5.28
2010 5336 2.109425 ATGGTCTTTAGTGCCGGTTC 57.891 50.000 1.90 0.00 0.00 3.62
2011 5337 0.320073 TGGTCTTTAGTGCCGGTTCG 60.320 55.000 1.90 0.00 0.00 3.95
2030 5356 2.928416 GCAACCGGCACTAAAGAGT 58.072 52.632 0.00 0.00 43.97 3.24
2044 5370 4.531339 ACTAAAGAGTGGGGACTAAAGGTC 59.469 45.833 0.00 0.00 38.17 3.85
2064 5390 3.312080 CCCCCTCTTTAGTACCGGT 57.688 57.895 13.98 13.98 0.00 5.28
2066 5392 1.483827 CCCCCTCTTTAGTACCGGTTC 59.516 57.143 15.04 8.12 0.00 3.62
2067 5393 2.181975 CCCCTCTTTAGTACCGGTTCA 58.818 52.381 15.04 0.00 0.00 3.18
2068 5394 2.770232 CCCCTCTTTAGTACCGGTTCAT 59.230 50.000 15.04 0.95 0.00 2.57
2071 5397 4.430908 CCTCTTTAGTACCGGTTCATCAC 58.569 47.826 15.04 3.84 0.00 3.06
2081 5407 3.115892 TTCATCACGAACCGGCGC 61.116 61.111 0.00 0.00 33.86 6.53
2082 5408 3.583276 TTCATCACGAACCGGCGCT 62.583 57.895 7.64 0.00 33.86 5.92
2083 5409 2.202690 CATCACGAACCGGCGCTA 60.203 61.111 7.64 0.00 33.86 4.26
2084 5410 1.807981 CATCACGAACCGGCGCTAA 60.808 57.895 7.64 0.00 33.86 3.09
2085 5411 1.079681 ATCACGAACCGGCGCTAAA 60.080 52.632 7.64 0.00 33.86 1.85
2106 6797 2.562912 CCAACACGTGGCATGAGC 59.437 61.111 21.57 0.00 41.72 4.26
2128 6819 4.446413 CCCGGGTGCGTGTAGGAC 62.446 72.222 14.18 0.00 40.80 3.85
2130 6821 2.577059 CGGGTGCGTGTAGGACAT 59.423 61.111 0.00 0.00 43.57 3.06
2131 6822 1.079405 CGGGTGCGTGTAGGACATT 60.079 57.895 0.00 0.00 43.57 2.71
2132 6823 0.173935 CGGGTGCGTGTAGGACATTA 59.826 55.000 0.00 0.00 43.57 1.90
2135 6826 2.428171 GGGTGCGTGTAGGACATTAGTA 59.572 50.000 0.00 0.00 43.57 1.82
2138 6829 2.097954 TGCGTGTAGGACATTAGTACCG 59.902 50.000 0.00 0.00 0.00 4.02
2139 6830 2.724349 CGTGTAGGACATTAGTACCGC 58.276 52.381 0.00 0.00 0.00 5.68
2140 6831 2.097954 CGTGTAGGACATTAGTACCGCA 59.902 50.000 0.00 0.00 0.00 5.69
2143 6834 4.336433 GTGTAGGACATTAGTACCGCACTA 59.664 45.833 0.00 0.00 38.80 2.74
2144 6835 4.577693 TGTAGGACATTAGTACCGCACTAG 59.422 45.833 0.00 0.00 40.83 2.57
2145 6836 3.629087 AGGACATTAGTACCGCACTAGT 58.371 45.455 0.00 0.00 40.83 2.57
2146 6837 4.785301 AGGACATTAGTACCGCACTAGTA 58.215 43.478 0.00 0.00 40.83 1.82
2147 6838 4.820716 AGGACATTAGTACCGCACTAGTAG 59.179 45.833 0.00 0.00 40.83 2.57
2148 6839 4.818546 GGACATTAGTACCGCACTAGTAGA 59.181 45.833 3.59 0.00 40.83 2.59
2153 6844 4.715527 AGTACCGCACTAGTAGAAAAGG 57.284 45.455 3.59 4.42 34.98 3.11
2154 6845 3.446516 AGTACCGCACTAGTAGAAAAGGG 59.553 47.826 3.59 0.61 34.98 3.95
2155 6846 1.553704 ACCGCACTAGTAGAAAAGGGG 59.446 52.381 3.59 10.36 35.47 4.79
2157 6848 1.742750 CGCACTAGTAGAAAAGGGGCC 60.743 57.143 3.59 0.00 0.00 5.80
2158 6849 1.280998 GCACTAGTAGAAAAGGGGCCA 59.719 52.381 4.39 0.00 0.00 5.36
2159 6850 2.290705 GCACTAGTAGAAAAGGGGCCAA 60.291 50.000 4.39 0.00 0.00 4.52
2162 6853 2.532250 AGTAGAAAAGGGGCCAATGG 57.468 50.000 4.39 0.00 0.00 3.16
2164 6855 2.100197 GTAGAAAAGGGGCCAATGGTC 58.900 52.381 4.39 0.00 0.00 4.02
2173 6864 4.047125 CCAATGGTCCAGGCCGGT 62.047 66.667 1.90 0.00 35.57 5.28
2174 6865 2.438434 CAATGGTCCAGGCCGGTC 60.438 66.667 0.00 0.00 35.57 4.79
2184 6875 3.804329 GGCCGGTCCAGCCCATTA 61.804 66.667 4.55 0.00 45.16 1.90
2185 6876 2.203209 GCCGGTCCAGCCCATTAG 60.203 66.667 1.90 0.00 0.00 1.73
2186 6877 3.043999 GCCGGTCCAGCCCATTAGT 62.044 63.158 1.90 0.00 0.00 2.24
2187 6878 1.146263 CCGGTCCAGCCCATTAGTC 59.854 63.158 0.00 0.00 0.00 2.59
2188 6879 1.146263 CGGTCCAGCCCATTAGTCC 59.854 63.158 0.00 0.00 0.00 3.85
2189 6880 1.532238 GGTCCAGCCCATTAGTCCC 59.468 63.158 0.00 0.00 0.00 4.46
2191 6882 2.070039 TCCAGCCCATTAGTCCCGG 61.070 63.158 0.00 0.00 0.00 5.73
2193 6884 2.366972 AGCCCATTAGTCCCGGCT 60.367 61.111 0.00 0.00 46.96 5.52
2194 6885 2.111251 GCCCATTAGTCCCGGCTC 59.889 66.667 0.00 0.00 38.41 4.70
2195 6886 2.742116 GCCCATTAGTCCCGGCTCA 61.742 63.158 0.00 0.00 38.41 4.26
2197 6888 0.474184 CCCATTAGTCCCGGCTCAAT 59.526 55.000 0.00 0.00 0.00 2.57
2198 6889 1.133792 CCCATTAGTCCCGGCTCAATT 60.134 52.381 0.00 0.00 0.00 2.32
2199 6890 2.222027 CCATTAGTCCCGGCTCAATTC 58.778 52.381 0.00 0.00 0.00 2.17
2200 6891 2.421388 CCATTAGTCCCGGCTCAATTCA 60.421 50.000 0.00 0.00 0.00 2.57
2201 6892 2.691409 TTAGTCCCGGCTCAATTCAG 57.309 50.000 0.00 0.00 0.00 3.02
2202 6893 1.860641 TAGTCCCGGCTCAATTCAGA 58.139 50.000 0.00 0.00 0.00 3.27
2203 6894 0.984230 AGTCCCGGCTCAATTCAGAA 59.016 50.000 0.00 0.00 0.00 3.02
2204 6895 1.087501 GTCCCGGCTCAATTCAGAAC 58.912 55.000 0.00 0.00 0.00 3.01
2206 6897 1.369091 CCCGGCTCAATTCAGAACCG 61.369 60.000 0.00 2.77 44.60 4.44
2207 6898 2.089854 CGGCTCAATTCAGAACCGG 58.910 57.895 0.00 0.00 42.09 5.28
2208 6899 1.369091 CGGCTCAATTCAGAACCGGG 61.369 60.000 6.32 0.00 42.09 5.73
2209 6900 0.035439 GGCTCAATTCAGAACCGGGA 60.035 55.000 6.32 0.00 0.00 5.14
2210 6901 1.087501 GCTCAATTCAGAACCGGGAC 58.912 55.000 6.32 0.00 0.00 4.46
2211 6902 1.739067 CTCAATTCAGAACCGGGACC 58.261 55.000 6.32 0.00 0.00 4.46
2212 6903 1.003118 CTCAATTCAGAACCGGGACCA 59.997 52.381 6.32 0.00 0.00 4.02
2213 6904 1.422024 TCAATTCAGAACCGGGACCAA 59.578 47.619 6.32 0.00 0.00 3.67
2215 6906 0.321298 ATTCAGAACCGGGACCAACG 60.321 55.000 6.32 0.00 0.00 4.10
2228 6919 3.068064 CAACGGGGGCATTGGACC 61.068 66.667 0.00 0.00 43.93 4.46
2234 6925 2.754254 GGGCATTGGACCCGGTTC 60.754 66.667 0.00 0.00 37.67 3.62
2235 6926 2.034999 GGCATTGGACCCGGTTCA 59.965 61.111 0.00 0.00 0.00 3.18
2236 6927 1.379843 GGCATTGGACCCGGTTCAT 60.380 57.895 0.00 0.00 0.00 2.57
2237 6928 1.666209 GGCATTGGACCCGGTTCATG 61.666 60.000 0.00 1.98 0.00 3.07
2239 6930 1.382522 CATTGGACCCGGTTCATGAG 58.617 55.000 0.00 0.00 0.00 2.90
2240 6931 0.394352 ATTGGACCCGGTTCATGAGC 60.394 55.000 0.00 0.04 0.00 4.26
2241 6932 2.124695 GGACCCGGTTCATGAGCC 60.125 66.667 18.11 18.11 0.00 4.70
2242 6933 2.124695 GACCCGGTTCATGAGCCC 60.125 66.667 21.54 12.43 0.00 5.19
2243 6934 3.699134 GACCCGGTTCATGAGCCCC 62.699 68.421 21.54 10.04 0.00 5.80
2245 6936 2.124570 CCGGTTCATGAGCCCCAG 60.125 66.667 21.54 8.76 0.00 4.45
2247 6938 2.276740 GGTTCATGAGCCCCAGGG 59.723 66.667 17.35 0.00 38.57 4.45
2271 6962 4.715523 CGGGCCACGTGGGTCATT 62.716 66.667 34.58 0.00 45.89 2.57
2272 6963 3.061848 GGGCCACGTGGGTCATTG 61.062 66.667 34.58 9.05 45.89 2.82
2273 6964 3.061848 GGCCACGTGGGTCATTGG 61.062 66.667 34.58 8.47 42.53 3.16
2274 6965 2.282180 GCCACGTGGGTCATTGGT 60.282 61.111 34.58 0.00 39.65 3.67
2275 6966 2.332654 GCCACGTGGGTCATTGGTC 61.333 63.158 34.58 11.86 39.65 4.02
2276 6967 1.674322 CCACGTGGGTCATTGGTCC 60.674 63.158 27.57 0.00 0.00 4.46
2277 6968 1.674322 CACGTGGGTCATTGGTCCC 60.674 63.158 7.95 9.78 42.15 4.46
2278 6969 2.435938 CGTGGGTCATTGGTCCCG 60.436 66.667 11.30 4.20 44.45 5.14
2279 6970 2.045340 GTGGGTCATTGGTCCCGG 60.045 66.667 0.00 0.00 44.45 5.73
2280 6971 2.530661 TGGGTCATTGGTCCCGGT 60.531 61.111 0.00 0.00 44.45 5.28
2281 6972 2.157452 TGGGTCATTGGTCCCGGTT 61.157 57.895 0.00 0.00 44.45 4.44
2282 6973 1.378119 GGGTCATTGGTCCCGGTTC 60.378 63.158 0.00 0.00 32.60 3.62
2283 6974 1.743995 GGTCATTGGTCCCGGTTCG 60.744 63.158 0.00 0.00 0.00 3.95
2284 6975 1.004200 GTCATTGGTCCCGGTTCGT 60.004 57.895 0.00 0.00 0.00 3.85
2285 6976 1.017701 GTCATTGGTCCCGGTTCGTC 61.018 60.000 0.00 0.00 0.00 4.20
2286 6977 1.189524 TCATTGGTCCCGGTTCGTCT 61.190 55.000 0.00 0.00 0.00 4.18
2287 6978 1.019278 CATTGGTCCCGGTTCGTCTG 61.019 60.000 0.00 0.00 0.00 3.51
2288 6979 2.180159 ATTGGTCCCGGTTCGTCTGG 62.180 60.000 0.00 2.18 42.06 3.86
2289 6980 2.993264 GGTCCCGGTTCGTCTGGA 60.993 66.667 0.00 0.00 45.09 3.86
2290 6981 2.260743 GTCCCGGTTCGTCTGGAC 59.739 66.667 0.00 0.00 45.09 4.02
2291 6982 2.993264 TCCCGGTTCGTCTGGACC 60.993 66.667 0.00 0.00 45.09 4.46
2292 6983 2.995574 CCCGGTTCGTCTGGACCT 60.996 66.667 0.00 0.00 45.09 3.85
2293 6984 1.679977 CCCGGTTCGTCTGGACCTA 60.680 63.158 0.00 0.00 45.09 3.08
2294 6985 1.041447 CCCGGTTCGTCTGGACCTAT 61.041 60.000 0.00 0.00 45.09 2.57
2295 6986 0.822164 CCGGTTCGTCTGGACCTATT 59.178 55.000 0.00 0.00 45.09 1.73
2296 6987 1.470979 CCGGTTCGTCTGGACCTATTG 60.471 57.143 0.00 0.00 45.09 1.90
2297 6988 1.470979 CGGTTCGTCTGGACCTATTGG 60.471 57.143 0.00 0.00 39.83 3.16
2307 6998 1.996086 ACCTATTGGTCCCGGTTGG 59.004 57.895 0.00 0.00 44.78 3.77
2308 6999 0.843343 ACCTATTGGTCCCGGTTGGT 60.843 55.000 0.00 0.00 44.78 3.67
2309 7000 0.393808 CCTATTGGTCCCGGTTGGTG 60.394 60.000 0.00 0.00 34.77 4.17
2310 7001 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
2317 7008 2.667199 CCGGTTGGTGGGACGAAC 60.667 66.667 0.00 0.00 36.30 3.95
2319 7010 2.667199 GGTTGGTGGGACGAACCG 60.667 66.667 5.08 0.00 44.79 4.44
2320 7011 2.667199 GTTGGTGGGACGAACCGG 60.667 66.667 0.00 0.00 40.86 5.28
2321 7012 3.943691 TTGGTGGGACGAACCGGG 61.944 66.667 6.32 0.00 40.86 5.73
2322 7013 4.938074 TGGTGGGACGAACCGGGA 62.938 66.667 6.32 0.00 40.86 5.14
2323 7014 4.383861 GGTGGGACGAACCGGGAC 62.384 72.222 6.32 0.00 40.11 4.46
2324 7015 4.383861 GTGGGACGAACCGGGACC 62.384 72.222 6.32 0.00 40.11 4.46
2325 7016 4.938074 TGGGACGAACCGGGACCA 62.938 66.667 6.32 1.29 40.11 4.02
2326 7017 3.628982 GGGACGAACCGGGACCAA 61.629 66.667 6.32 0.00 40.11 3.67
2327 7018 2.666812 GGACGAACCGGGACCAAT 59.333 61.111 6.32 0.00 0.00 3.16
2328 7019 1.743995 GGACGAACCGGGACCAATG 60.744 63.158 6.32 0.00 0.00 2.82
2329 7020 1.743995 GACGAACCGGGACCAATGG 60.744 63.158 6.32 0.00 0.00 3.16
2330 7021 3.131478 CGAACCGGGACCAATGGC 61.131 66.667 6.32 0.00 0.00 4.40
2331 7022 2.754254 GAACCGGGACCAATGGCC 60.754 66.667 6.32 0.00 0.00 5.36
2332 7023 4.376170 AACCGGGACCAATGGCCC 62.376 66.667 18.15 18.15 36.26 5.80
2334 7025 4.506255 CCGGGACCAATGGCCCTC 62.506 72.222 23.05 6.21 37.05 4.30
2335 7026 4.856801 CGGGACCAATGGCCCTCG 62.857 72.222 23.05 13.54 37.05 4.63
2337 7028 4.115199 GGACCAATGGCCCTCGCT 62.115 66.667 0.00 0.00 34.44 4.93
2338 7029 2.514824 GACCAATGGCCCTCGCTC 60.515 66.667 0.00 0.00 34.44 5.03
2339 7030 4.115199 ACCAATGGCCCTCGCTCC 62.115 66.667 0.00 0.00 34.44 4.70
2340 7031 3.801997 CCAATGGCCCTCGCTCCT 61.802 66.667 0.00 0.00 34.44 3.69
2341 7032 2.515523 CAATGGCCCTCGCTCCTG 60.516 66.667 0.00 0.00 34.44 3.86
2342 7033 3.801997 AATGGCCCTCGCTCCTGG 61.802 66.667 0.00 0.00 34.44 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.687321 CTGTCCTGGGATGCGGTGG 62.687 68.421 0.00 0.00 0.00 4.61
19 20 2.124983 CTGTCCTGGGATGCGGTG 60.125 66.667 0.00 0.00 0.00 4.94
20 21 3.402681 CCTGTCCTGGGATGCGGT 61.403 66.667 0.00 0.00 0.00 5.68
21 22 3.391665 GACCTGTCCTGGGATGCGG 62.392 68.421 0.00 0.00 0.00 5.69
22 23 2.187946 GACCTGTCCTGGGATGCG 59.812 66.667 0.00 0.00 0.00 4.73
23 24 1.222936 CAGACCTGTCCTGGGATGC 59.777 63.158 0.00 0.00 0.00 3.91
24 25 1.910722 CCAGACCTGTCCTGGGATG 59.089 63.158 0.00 0.00 45.66 3.51
25 26 4.488303 CCAGACCTGTCCTGGGAT 57.512 61.111 0.00 0.00 45.66 3.85
29 30 1.763968 TCGTATCCAGACCTGTCCTG 58.236 55.000 0.00 0.00 0.00 3.86
30 31 2.588620 GATCGTATCCAGACCTGTCCT 58.411 52.381 0.00 0.00 0.00 3.85
42 43 1.339151 GGCAGGGGATTGGATCGTATC 60.339 57.143 0.00 0.00 0.00 2.24
43 44 0.693049 GGCAGGGGATTGGATCGTAT 59.307 55.000 0.00 0.00 0.00 3.06
44 45 0.692756 TGGCAGGGGATTGGATCGTA 60.693 55.000 0.00 0.00 0.00 3.43
45 46 1.570857 TTGGCAGGGGATTGGATCGT 61.571 55.000 0.00 0.00 0.00 3.73
46 47 0.395586 TTTGGCAGGGGATTGGATCG 60.396 55.000 0.00 0.00 0.00 3.69
47 48 1.114627 GTTTGGCAGGGGATTGGATC 58.885 55.000 0.00 0.00 0.00 3.36
48 49 0.684153 CGTTTGGCAGGGGATTGGAT 60.684 55.000 0.00 0.00 0.00 3.41
49 50 1.304052 CGTTTGGCAGGGGATTGGA 60.304 57.895 0.00 0.00 0.00 3.53
50 51 2.350458 CCGTTTGGCAGGGGATTGG 61.350 63.158 0.00 0.00 0.00 3.16
51 52 0.684153 ATCCGTTTGGCAGGGGATTG 60.684 55.000 9.44 0.00 35.82 2.67
52 53 0.923358 TATCCGTTTGGCAGGGGATT 59.077 50.000 17.47 6.22 39.82 3.01
53 54 0.474184 CTATCCGTTTGGCAGGGGAT 59.526 55.000 16.75 16.75 41.88 3.85
54 55 0.619255 TCTATCCGTTTGGCAGGGGA 60.619 55.000 5.83 5.83 34.14 4.81
55 56 0.254747 TTCTATCCGTTTGGCAGGGG 59.745 55.000 2.14 0.00 34.14 4.79
56 57 2.222027 GATTCTATCCGTTTGGCAGGG 58.778 52.381 0.00 0.00 34.14 4.45
57 58 2.222027 GGATTCTATCCGTTTGGCAGG 58.778 52.381 0.00 0.00 40.13 4.85
76 77 2.669419 GGACGTCCGTTTTATCCGG 58.331 57.895 20.85 0.00 46.83 5.14
87 88 3.351416 GTGCCCAAACGGACGTCC 61.351 66.667 25.28 25.28 0.00 4.79
88 89 3.708734 CGTGCCCAAACGGACGTC 61.709 66.667 7.13 7.13 39.89 4.34
94 95 3.353836 CTCCACCGTGCCCAAACG 61.354 66.667 0.00 0.00 43.20 3.60
95 96 0.535553 TAACTCCACCGTGCCCAAAC 60.536 55.000 0.00 0.00 0.00 2.93
96 97 0.250553 CTAACTCCACCGTGCCCAAA 60.251 55.000 0.00 0.00 0.00 3.28
97 98 1.373435 CTAACTCCACCGTGCCCAA 59.627 57.895 0.00 0.00 0.00 4.12
98 99 3.065306 CTAACTCCACCGTGCCCA 58.935 61.111 0.00 0.00 0.00 5.36
99 100 2.436115 GCTAACTCCACCGTGCCC 60.436 66.667 0.00 0.00 0.00 5.36
100 101 2.436115 GGCTAACTCCACCGTGCC 60.436 66.667 0.00 0.00 0.00 5.01
101 102 1.448013 GAGGCTAACTCCACCGTGC 60.448 63.158 0.00 0.00 40.49 5.34
102 103 0.320374 TTGAGGCTAACTCCACCGTG 59.680 55.000 0.00 0.00 46.01 4.94
103 104 1.276622 ATTGAGGCTAACTCCACCGT 58.723 50.000 0.00 0.00 46.01 4.83
104 105 2.803492 GCTATTGAGGCTAACTCCACCG 60.803 54.545 0.00 0.00 46.01 4.94
105 106 2.803492 CGCTATTGAGGCTAACTCCACC 60.803 54.545 0.00 0.00 46.01 4.61
106 107 2.159085 ACGCTATTGAGGCTAACTCCAC 60.159 50.000 0.00 0.00 46.01 4.02
107 108 2.100916 GACGCTATTGAGGCTAACTCCA 59.899 50.000 0.00 0.00 46.01 3.86
108 109 2.100916 TGACGCTATTGAGGCTAACTCC 59.899 50.000 0.00 0.00 46.01 3.85
109 110 3.438297 TGACGCTATTGAGGCTAACTC 57.562 47.619 0.00 0.00 46.78 3.01
110 111 3.243907 GGATGACGCTATTGAGGCTAACT 60.244 47.826 0.00 0.00 0.00 2.24
111 112 3.060602 GGATGACGCTATTGAGGCTAAC 58.939 50.000 0.00 0.00 0.00 2.34
112 113 2.698274 TGGATGACGCTATTGAGGCTAA 59.302 45.455 0.00 0.00 0.00 3.09
113 114 2.316108 TGGATGACGCTATTGAGGCTA 58.684 47.619 0.00 0.00 0.00 3.93
114 115 1.123077 TGGATGACGCTATTGAGGCT 58.877 50.000 0.00 0.00 0.00 4.58
115 116 2.072298 GATGGATGACGCTATTGAGGC 58.928 52.381 0.00 0.00 0.00 4.70
116 117 3.006217 TGAGATGGATGACGCTATTGAGG 59.994 47.826 0.00 0.00 0.00 3.86
117 118 3.986572 GTGAGATGGATGACGCTATTGAG 59.013 47.826 0.00 0.00 0.00 3.02
118 119 3.243873 GGTGAGATGGATGACGCTATTGA 60.244 47.826 0.00 0.00 0.00 2.57
119 120 3.062763 GGTGAGATGGATGACGCTATTG 58.937 50.000 0.00 0.00 0.00 1.90
120 121 2.968574 AGGTGAGATGGATGACGCTATT 59.031 45.455 0.00 0.00 0.00 1.73
121 122 2.560542 GAGGTGAGATGGATGACGCTAT 59.439 50.000 0.00 0.00 0.00 2.97
122 123 1.957177 GAGGTGAGATGGATGACGCTA 59.043 52.381 0.00 0.00 0.00 4.26
123 124 0.749649 GAGGTGAGATGGATGACGCT 59.250 55.000 0.00 0.00 0.00 5.07
124 125 0.249657 GGAGGTGAGATGGATGACGC 60.250 60.000 0.00 0.00 0.00 5.19
125 126 0.031314 CGGAGGTGAGATGGATGACG 59.969 60.000 0.00 0.00 0.00 4.35
126 127 1.115467 ACGGAGGTGAGATGGATGAC 58.885 55.000 0.00 0.00 0.00 3.06
127 128 2.307768 GTACGGAGGTGAGATGGATGA 58.692 52.381 0.00 0.00 0.00 2.92
128 129 1.001268 CGTACGGAGGTGAGATGGATG 60.001 57.143 7.57 0.00 0.00 3.51
129 130 1.133884 TCGTACGGAGGTGAGATGGAT 60.134 52.381 16.52 0.00 0.00 3.41
130 131 0.253894 TCGTACGGAGGTGAGATGGA 59.746 55.000 16.52 0.00 0.00 3.41
131 132 0.381089 GTCGTACGGAGGTGAGATGG 59.619 60.000 16.52 0.00 0.00 3.51
132 133 0.027716 CGTCGTACGGAGGTGAGATG 59.972 60.000 16.52 0.00 38.08 2.90
133 134 2.391469 CGTCGTACGGAGGTGAGAT 58.609 57.895 16.52 0.00 38.08 2.75
134 135 3.880591 CGTCGTACGGAGGTGAGA 58.119 61.111 16.52 0.00 38.08 3.27
144 145 3.588057 TTTTCCCCGGCCGTCGTAC 62.588 63.158 26.12 0.00 37.11 3.67
145 146 3.299524 CTTTTCCCCGGCCGTCGTA 62.300 63.158 26.12 3.96 37.11 3.43
146 147 4.692475 CTTTTCCCCGGCCGTCGT 62.692 66.667 26.12 0.00 37.11 4.34
147 148 3.887335 TTCTTTTCCCCGGCCGTCG 62.887 63.158 26.12 13.70 38.88 5.12
148 149 1.174078 TTTTCTTTTCCCCGGCCGTC 61.174 55.000 26.12 0.00 0.00 4.79
149 150 0.541063 ATTTTCTTTTCCCCGGCCGT 60.541 50.000 26.12 0.00 0.00 5.68
150 151 0.108851 CATTTTCTTTTCCCCGGCCG 60.109 55.000 21.04 21.04 0.00 6.13
151 152 0.391130 GCATTTTCTTTTCCCCGGCC 60.391 55.000 0.00 0.00 0.00 6.13
152 153 0.320050 TGCATTTTCTTTTCCCCGGC 59.680 50.000 0.00 0.00 0.00 6.13
153 154 2.735126 CGATGCATTTTCTTTTCCCCGG 60.735 50.000 0.00 0.00 0.00 5.73
154 155 2.529151 CGATGCATTTTCTTTTCCCCG 58.471 47.619 0.00 0.00 0.00 5.73
155 156 2.892374 CCGATGCATTTTCTTTTCCCC 58.108 47.619 0.00 0.00 0.00 4.81
156 157 2.270923 GCCGATGCATTTTCTTTTCCC 58.729 47.619 0.00 0.00 37.47 3.97
157 158 2.958213 TGCCGATGCATTTTCTTTTCC 58.042 42.857 0.00 0.00 44.23 3.13
191 192 3.706373 TTGGAGCGACCCTCTGGC 61.706 66.667 0.00 0.00 40.57 4.85
239 241 0.837940 TCGGGCTCTAGTCTAGCTCA 59.162 55.000 1.60 0.00 40.69 4.26
240 242 1.232119 GTCGGGCTCTAGTCTAGCTC 58.768 60.000 1.60 0.00 39.97 4.09
315 327 1.152694 ACTGGCACTGGCATGTGTT 60.153 52.632 5.63 0.50 43.71 3.32
319 331 1.748122 GAGGACTGGCACTGGCATG 60.748 63.158 5.63 3.45 43.71 4.06
320 332 2.673523 GAGGACTGGCACTGGCAT 59.326 61.111 5.63 0.00 43.71 4.40
321 333 3.640407 GGAGGACTGGCACTGGCA 61.640 66.667 5.02 5.02 43.71 4.92
322 334 4.416738 GGGAGGACTGGCACTGGC 62.417 72.222 0.00 0.00 40.13 4.85
323 335 4.087892 CGGGAGGACTGGCACTGG 62.088 72.222 0.00 0.00 0.00 4.00
324 336 4.767255 GCGGGAGGACTGGCACTG 62.767 72.222 0.00 0.00 0.00 3.66
332 347 1.668151 GTTGTGTGAGCGGGAGGAC 60.668 63.158 0.00 0.00 0.00 3.85
352 367 3.565516 GCAGGTGGAATCGTTTTCTTTC 58.434 45.455 1.93 0.00 0.00 2.62
353 368 2.296190 GGCAGGTGGAATCGTTTTCTTT 59.704 45.455 0.00 0.00 0.00 2.52
362 377 2.129785 GGCCATGGCAGGTGGAATC 61.130 63.158 36.56 13.39 44.11 2.52
482 539 2.667199 GTGGTTTGGACGGACGGG 60.667 66.667 0.00 0.00 0.00 5.28
503 560 4.421479 CGCGCGAGTGGAAGGTCT 62.421 66.667 28.94 0.00 38.12 3.85
526 583 0.179073 CGGGATGGGTAGCAGTTGAG 60.179 60.000 0.00 0.00 0.00 3.02
527 584 1.904771 CGGGATGGGTAGCAGTTGA 59.095 57.895 0.00 0.00 0.00 3.18
528 585 1.819632 GCGGGATGGGTAGCAGTTG 60.820 63.158 0.00 0.00 0.00 3.16
529 586 1.972660 GAGCGGGATGGGTAGCAGTT 61.973 60.000 0.00 0.00 0.00 3.16
530 587 2.365635 AGCGGGATGGGTAGCAGT 60.366 61.111 0.00 0.00 0.00 4.40
532 589 2.364973 TGAGCGGGATGGGTAGCA 60.365 61.111 0.00 0.00 0.00 3.49
533 590 2.109181 GTGAGCGGGATGGGTAGC 59.891 66.667 0.00 0.00 0.00 3.58
670 3459 4.626402 TCGGGTCGGGAAGGGTGT 62.626 66.667 0.00 0.00 0.00 4.16
671 3460 4.078516 GTCGGGTCGGGAAGGGTG 62.079 72.222 0.00 0.00 0.00 4.61
674 3463 2.186903 CATGTCGGGTCGGGAAGG 59.813 66.667 0.00 0.00 0.00 3.46
676 3465 1.895020 CTTCCATGTCGGGTCGGGAA 61.895 60.000 0.00 0.00 36.31 3.97
776 3582 9.391227 AGGAGATTGGAAGATTAGATAAGTGAT 57.609 33.333 0.00 0.00 0.00 3.06
777 3583 8.789767 AGGAGATTGGAAGATTAGATAAGTGA 57.210 34.615 0.00 0.00 0.00 3.41
778 3584 8.869109 AGAGGAGATTGGAAGATTAGATAAGTG 58.131 37.037 0.00 0.00 0.00 3.16
779 3585 9.088987 GAGAGGAGATTGGAAGATTAGATAAGT 57.911 37.037 0.00 0.00 0.00 2.24
780 3586 8.243426 CGAGAGGAGATTGGAAGATTAGATAAG 58.757 40.741 0.00 0.00 0.00 1.73
781 3587 8.116651 CGAGAGGAGATTGGAAGATTAGATAA 57.883 38.462 0.00 0.00 0.00 1.75
782 3588 7.695480 CGAGAGGAGATTGGAAGATTAGATA 57.305 40.000 0.00 0.00 0.00 1.98
812 3974 3.584250 CTTGCAAGGCTCGTGCGTG 62.584 63.158 19.14 6.44 45.27 5.34
813 3975 3.349006 CTTGCAAGGCTCGTGCGT 61.349 61.111 19.14 0.42 45.27 5.24
824 3995 5.764131 CGGTTGTTTTTATAGGACTTGCAA 58.236 37.500 0.00 0.00 0.00 4.08
987 4204 1.337071 CCTTGCATGATGATGACAGCC 59.663 52.381 0.00 0.00 0.00 4.85
992 4209 0.468585 GCCCCCTTGCATGATGATGA 60.469 55.000 0.00 0.00 0.00 2.92
1010 4227 2.124942 CCTTCTTCTCCGCCTGGC 60.125 66.667 9.11 9.11 34.14 4.85
1093 4337 4.143333 CGGGATGACGAACCGCCT 62.143 66.667 0.00 0.00 41.23 5.52
1110 4354 0.960286 GGTGGTAGAGGTAGGCGATC 59.040 60.000 0.00 0.00 0.00 3.69
1167 4411 1.567504 CGGCCGAGTTGTAACCATAG 58.432 55.000 24.07 0.00 0.00 2.23
1173 4417 4.397832 GGGCCGGCCGAGTTGTAA 62.398 66.667 38.22 0.00 36.85 2.41
1257 4501 4.057428 GGCGAGGAGTGCGAGTGT 62.057 66.667 0.00 0.00 0.00 3.55
1361 4632 0.459237 CGGGGCTCGATGATAGATGC 60.459 60.000 0.00 0.00 42.43 3.91
1366 4637 3.311110 GGCCGGGGCTCGATGATA 61.311 66.667 9.18 0.00 42.43 2.15
1428 4707 0.606673 AGGCGGCAGAAAGAAGAACC 60.607 55.000 13.08 0.00 0.00 3.62
1462 4751 0.602638 ACGTGTACATGTGTGGCTGG 60.603 55.000 19.84 0.00 0.00 4.85
1466 4755 2.247637 CGAGTACGTGTACATGTGTGG 58.752 52.381 27.33 13.66 38.48 4.17
1522 4811 1.755959 CTACTGACTGCCTCTCATGCT 59.244 52.381 0.00 0.00 0.00 3.79
1553 4842 4.023536 GGCAACGACTAATCACCTCAAAAA 60.024 41.667 0.00 0.00 0.00 1.94
1554 4843 3.500680 GGCAACGACTAATCACCTCAAAA 59.499 43.478 0.00 0.00 0.00 2.44
1555 4844 3.071479 GGCAACGACTAATCACCTCAAA 58.929 45.455 0.00 0.00 0.00 2.69
1556 4845 2.695359 GGCAACGACTAATCACCTCAA 58.305 47.619 0.00 0.00 0.00 3.02
1557 4846 2.380084 GGCAACGACTAATCACCTCA 57.620 50.000 0.00 0.00 0.00 3.86
1660 4976 8.245195 TGGAAAAATATATCCAAAAGCCTACC 57.755 34.615 3.07 0.00 42.61 3.18
1738 5060 3.190874 GTTTGGAGATGAGCGTTAGAGG 58.809 50.000 0.00 0.00 0.00 3.69
1742 5064 3.410631 TTGGTTTGGAGATGAGCGTTA 57.589 42.857 0.00 0.00 0.00 3.18
1749 5071 2.287547 CGTGGTGTTTGGTTTGGAGATG 60.288 50.000 0.00 0.00 0.00 2.90
1761 5083 1.480205 CGTAGACGAACGTGGTGTTT 58.520 50.000 4.19 0.00 42.09 2.83
1767 5089 1.395954 TCTGATCCGTAGACGAACGTG 59.604 52.381 4.19 0.00 41.27 4.49
1770 5092 4.352600 TTTCTCTGATCCGTAGACGAAC 57.647 45.455 3.07 0.00 43.02 3.95
1772 5094 3.128242 GGTTTTCTCTGATCCGTAGACGA 59.872 47.826 3.07 0.00 43.02 4.20
1812 5134 1.059098 ACACTTGGATGGTCAGCTCA 58.941 50.000 0.00 0.00 0.00 4.26
1817 5142 3.169908 TGTAGCTACACTTGGATGGTCA 58.830 45.455 22.67 0.00 0.00 4.02
1870 5195 2.476997 TCGTCGCGTTTGATGAAAATCA 59.523 40.909 5.77 0.00 31.14 2.57
1956 5282 1.059913 AAGCCTGGTTCTGCACTAGT 58.940 50.000 0.00 0.00 31.92 2.57
1957 5283 2.191128 AAAGCCTGGTTCTGCACTAG 57.809 50.000 0.00 0.00 33.68 2.57
1958 5284 2.615493 GCTAAAGCCTGGTTCTGCACTA 60.615 50.000 0.00 0.00 34.31 2.74
1960 5286 0.523519 GCTAAAGCCTGGTTCTGCAC 59.476 55.000 0.00 0.00 34.31 4.57
1962 5288 1.796796 CGCTAAAGCCTGGTTCTGC 59.203 57.895 0.00 0.00 37.91 4.26
1963 5289 1.796796 GCGCTAAAGCCTGGTTCTG 59.203 57.895 0.00 0.00 37.91 3.02
1964 5290 4.303257 GCGCTAAAGCCTGGTTCT 57.697 55.556 0.00 0.00 37.91 3.01
1972 5298 1.353609 TTACGAACCGGCGCTAAAGC 61.354 55.000 7.64 0.00 37.78 3.51
1973 5299 1.005347 CATTACGAACCGGCGCTAAAG 60.005 52.381 7.64 0.00 33.86 1.85
1974 5300 1.000884 CATTACGAACCGGCGCTAAA 58.999 50.000 7.64 0.00 33.86 1.85
1975 5301 0.806884 CCATTACGAACCGGCGCTAA 60.807 55.000 7.64 0.00 33.86 3.09
1976 5302 1.227031 CCATTACGAACCGGCGCTA 60.227 57.895 7.64 0.00 33.86 4.26
1977 5303 2.510691 CCATTACGAACCGGCGCT 60.511 61.111 7.64 0.00 33.86 5.92
1979 5305 0.738412 AAGACCATTACGAACCGGCG 60.738 55.000 0.00 0.00 37.29 6.46
1981 5307 3.615496 CACTAAAGACCATTACGAACCGG 59.385 47.826 0.00 0.00 0.00 5.28
1982 5308 3.061697 GCACTAAAGACCATTACGAACCG 59.938 47.826 0.00 0.00 0.00 4.44
1983 5309 3.373130 GGCACTAAAGACCATTACGAACC 59.627 47.826 0.00 0.00 0.00 3.62
1984 5310 3.061697 CGGCACTAAAGACCATTACGAAC 59.938 47.826 0.00 0.00 0.00 3.95
1985 5311 3.255725 CGGCACTAAAGACCATTACGAA 58.744 45.455 0.00 0.00 0.00 3.85
1986 5312 2.417651 CCGGCACTAAAGACCATTACGA 60.418 50.000 0.00 0.00 0.00 3.43
1989 5315 3.602483 GAACCGGCACTAAAGACCATTA 58.398 45.455 0.00 0.00 0.00 1.90
1991 5317 1.674817 CGAACCGGCACTAAAGACCAT 60.675 52.381 0.00 0.00 0.00 3.55
1992 5318 0.320073 CGAACCGGCACTAAAGACCA 60.320 55.000 0.00 0.00 0.00 4.02
1993 5319 1.017701 CCGAACCGGCACTAAAGACC 61.018 60.000 0.00 0.00 41.17 3.85
1994 5320 2.452767 CCGAACCGGCACTAAAGAC 58.547 57.895 0.00 0.00 41.17 3.01
2011 5337 0.605589 ACTCTTTAGTGCCGGTTGCC 60.606 55.000 1.90 0.00 40.16 4.52
2012 5338 0.517316 CACTCTTTAGTGCCGGTTGC 59.483 55.000 1.90 0.00 46.28 4.17
2019 5345 8.959287 GACCTTTAGTCCCCACTCTTTAGTGC 62.959 50.000 0.00 0.00 44.38 4.40
2020 5346 5.569026 GACCTTTAGTCCCCACTCTTTAGTG 60.569 48.000 0.00 0.00 44.83 2.74
2021 5347 4.500452 ACCTTTAGTCCCCACTCTTTAGT 58.500 43.478 0.00 0.00 35.91 2.24
2022 5348 5.087391 GACCTTTAGTCCCCACTCTTTAG 57.913 47.826 0.00 0.00 39.84 1.85
2046 5372 1.483827 GAACCGGTACTAAAGAGGGGG 59.516 57.143 8.00 0.00 0.00 5.40
2047 5373 2.181975 TGAACCGGTACTAAAGAGGGG 58.818 52.381 8.00 0.00 0.00 4.79
2049 5375 4.430908 GTGATGAACCGGTACTAAAGAGG 58.569 47.826 8.00 0.00 0.00 3.69
2050 5376 4.103357 CGTGATGAACCGGTACTAAAGAG 58.897 47.826 8.00 0.00 0.00 2.85
2051 5377 3.758023 TCGTGATGAACCGGTACTAAAGA 59.242 43.478 8.00 0.00 0.00 2.52
2052 5378 4.100707 TCGTGATGAACCGGTACTAAAG 57.899 45.455 8.00 0.00 0.00 1.85
2064 5390 2.215465 TAGCGCCGGTTCGTGATGAA 62.215 55.000 2.29 0.00 0.00 2.57
2066 5392 1.355796 TTTAGCGCCGGTTCGTGATG 61.356 55.000 2.29 0.00 0.00 3.07
2067 5393 1.079681 TTTAGCGCCGGTTCGTGAT 60.080 52.632 2.29 0.00 0.00 3.06
2068 5394 1.735198 CTTTAGCGCCGGTTCGTGA 60.735 57.895 2.29 0.00 0.00 4.35
2071 5397 2.776072 CACTTTAGCGCCGGTTCG 59.224 61.111 2.29 0.00 0.00 3.95
2078 5404 1.440353 CGTGTTGGCACTTTAGCGC 60.440 57.895 0.00 0.00 43.16 5.92
2080 5406 0.040425 CCACGTGTTGGCACTTTAGC 60.040 55.000 15.65 0.00 43.16 3.09
2113 6804 0.173935 TAATGTCCTACACGCACCCG 59.826 55.000 0.00 0.00 41.14 5.28
2115 6806 2.667473 ACTAATGTCCTACACGCACC 57.333 50.000 0.00 0.00 0.00 5.01
2117 6808 2.097954 CGGTACTAATGTCCTACACGCA 59.902 50.000 0.00 0.00 0.00 5.24
2118 6809 2.724349 CGGTACTAATGTCCTACACGC 58.276 52.381 0.00 0.00 0.00 5.34
2123 6814 4.785301 ACTAGTGCGGTACTAATGTCCTA 58.215 43.478 7.37 0.00 41.20 2.94
2125 6816 4.818546 TCTACTAGTGCGGTACTAATGTCC 59.181 45.833 5.39 0.00 41.20 4.02
2128 6819 6.696148 CCTTTTCTACTAGTGCGGTACTAATG 59.304 42.308 5.39 0.00 41.20 1.90
2130 6821 5.126061 CCCTTTTCTACTAGTGCGGTACTAA 59.874 44.000 5.39 0.00 41.20 2.24
2131 6822 4.641989 CCCTTTTCTACTAGTGCGGTACTA 59.358 45.833 5.39 5.82 40.89 1.82
2132 6823 3.446516 CCCTTTTCTACTAGTGCGGTACT 59.553 47.826 5.39 3.76 43.56 2.73
2135 6826 1.553704 CCCCTTTTCTACTAGTGCGGT 59.446 52.381 5.39 0.00 0.00 5.68
2138 6829 1.280998 TGGCCCCTTTTCTACTAGTGC 59.719 52.381 5.39 0.00 0.00 4.40
2139 6830 3.713826 TTGGCCCCTTTTCTACTAGTG 57.286 47.619 5.39 0.00 0.00 2.74
2140 6831 3.053619 CCATTGGCCCCTTTTCTACTAGT 60.054 47.826 0.00 0.00 0.00 2.57
2143 6834 1.716503 ACCATTGGCCCCTTTTCTACT 59.283 47.619 0.00 0.00 0.00 2.57
2144 6835 2.100197 GACCATTGGCCCCTTTTCTAC 58.900 52.381 0.00 0.00 0.00 2.59
2145 6836 1.006639 GGACCATTGGCCCCTTTTCTA 59.993 52.381 0.00 0.00 0.00 2.10
2146 6837 0.252239 GGACCATTGGCCCCTTTTCT 60.252 55.000 0.00 0.00 0.00 2.52
2147 6838 0.544120 TGGACCATTGGCCCCTTTTC 60.544 55.000 5.49 0.00 0.00 2.29
2148 6839 0.545071 CTGGACCATTGGCCCCTTTT 60.545 55.000 5.49 0.00 0.00 2.27
2157 6848 2.438434 GACCGGCCTGGACCATTG 60.438 66.667 18.74 0.00 42.00 2.82
2168 6859 2.203209 CTAATGGGCTGGACCGGC 60.203 66.667 17.70 17.70 40.62 6.13
2169 6860 1.146263 GACTAATGGGCTGGACCGG 59.854 63.158 0.00 0.00 40.62 5.28
2170 6861 1.146263 GGACTAATGGGCTGGACCG 59.854 63.158 0.00 0.00 40.62 4.79
2171 6862 1.532238 GGGACTAATGGGCTGGACC 59.468 63.158 0.00 0.00 37.93 4.46
2172 6863 1.146263 CGGGACTAATGGGCTGGAC 59.854 63.158 0.00 0.00 0.00 4.02
2173 6864 2.070039 CCGGGACTAATGGGCTGGA 61.070 63.158 0.00 0.00 0.00 3.86
2174 6865 2.510906 CCGGGACTAATGGGCTGG 59.489 66.667 0.00 0.00 0.00 4.85
2177 6868 2.111251 GAGCCGGGACTAATGGGC 59.889 66.667 2.18 0.00 45.91 5.36
2178 6869 0.474184 ATTGAGCCGGGACTAATGGG 59.526 55.000 2.18 0.00 0.00 4.00
2180 6871 2.874701 CTGAATTGAGCCGGGACTAATG 59.125 50.000 2.18 0.00 0.00 1.90
2181 6872 2.771943 TCTGAATTGAGCCGGGACTAAT 59.228 45.455 2.18 0.00 0.00 1.73
2182 6873 2.184533 TCTGAATTGAGCCGGGACTAA 58.815 47.619 2.18 0.00 0.00 2.24
2183 6874 1.860641 TCTGAATTGAGCCGGGACTA 58.139 50.000 2.18 0.00 0.00 2.59
2184 6875 0.984230 TTCTGAATTGAGCCGGGACT 59.016 50.000 2.18 0.00 0.00 3.85
2185 6876 1.087501 GTTCTGAATTGAGCCGGGAC 58.912 55.000 2.18 0.00 0.00 4.46
2186 6877 0.035439 GGTTCTGAATTGAGCCGGGA 60.035 55.000 2.18 0.00 0.00 5.14
2187 6878 2.482326 GGTTCTGAATTGAGCCGGG 58.518 57.895 2.18 0.00 0.00 5.73
2191 6882 1.087501 GTCCCGGTTCTGAATTGAGC 58.912 55.000 0.00 0.00 0.00 4.26
2193 6884 1.060729 TGGTCCCGGTTCTGAATTGA 58.939 50.000 0.00 0.00 0.00 2.57
2194 6885 1.539827 GTTGGTCCCGGTTCTGAATTG 59.460 52.381 0.00 0.00 0.00 2.32
2195 6886 1.880646 CGTTGGTCCCGGTTCTGAATT 60.881 52.381 0.00 0.00 0.00 2.17
2197 6888 1.070105 CGTTGGTCCCGGTTCTGAA 59.930 57.895 0.00 0.00 0.00 3.02
2198 6889 2.738480 CGTTGGTCCCGGTTCTGA 59.262 61.111 0.00 0.00 0.00 3.27
2199 6890 2.358247 CCGTTGGTCCCGGTTCTG 60.358 66.667 0.00 0.00 40.59 3.02
2200 6891 3.633116 CCCGTTGGTCCCGGTTCT 61.633 66.667 0.00 0.00 43.98 3.01
2201 6892 4.710167 CCCCGTTGGTCCCGGTTC 62.710 72.222 0.00 0.00 43.98 3.62
2206 6897 4.376170 AATGCCCCCGTTGGTCCC 62.376 66.667 0.00 0.00 0.00 4.46
2207 6898 3.068064 CAATGCCCCCGTTGGTCC 61.068 66.667 0.00 0.00 34.92 4.46
2211 6902 3.068064 GGTCCAATGCCCCCGTTG 61.068 66.667 0.00 0.00 37.64 4.10
2212 6903 4.376170 GGGTCCAATGCCCCCGTT 62.376 66.667 0.00 0.00 40.26 4.44
2216 6907 4.376170 AACCGGGTCCAATGCCCC 62.376 66.667 6.32 0.00 43.18 5.80
2217 6908 2.754254 GAACCGGGTCCAATGCCC 60.754 66.667 8.85 0.00 42.68 5.36
2218 6909 1.379843 ATGAACCGGGTCCAATGCC 60.380 57.895 19.01 0.00 0.00 4.40
2219 6910 0.679640 TCATGAACCGGGTCCAATGC 60.680 55.000 19.01 0.00 0.00 3.56
2221 6912 0.394352 GCTCATGAACCGGGTCCAAT 60.394 55.000 19.01 0.74 0.00 3.16
2223 6914 2.668632 GCTCATGAACCGGGTCCA 59.331 61.111 19.01 5.46 0.00 4.02
2224 6915 2.124695 GGCTCATGAACCGGGTCC 60.125 66.667 19.01 0.00 0.00 4.46
2228 6919 2.124570 CTGGGGCTCATGAACCGG 60.125 66.667 9.03 0.00 0.00 5.28
2229 6920 2.124570 CCTGGGGCTCATGAACCG 60.125 66.667 9.03 0.00 0.00 4.44
2230 6921 2.276740 CCCTGGGGCTCATGAACC 59.723 66.667 6.60 6.60 0.00 3.62
2231 6922 2.276740 CCCCTGGGGCTCATGAAC 59.723 66.667 21.20 0.00 35.35 3.18
2254 6945 4.715523 AATGACCCACGTGGCCCG 62.716 66.667 29.75 18.03 44.03 6.13
2255 6946 3.061848 CAATGACCCACGTGGCCC 61.062 66.667 29.75 21.36 37.83 5.80
2256 6947 3.061848 CCAATGACCCACGTGGCC 61.062 66.667 29.75 21.71 37.83 5.36
2257 6948 2.282180 ACCAATGACCCACGTGGC 60.282 61.111 29.75 16.98 37.83 5.01
2258 6949 1.674322 GGACCAATGACCCACGTGG 60.674 63.158 28.26 28.26 41.37 4.94
2259 6950 1.674322 GGGACCAATGACCCACGTG 60.674 63.158 9.08 9.08 44.83 4.49
2260 6951 2.754375 GGGACCAATGACCCACGT 59.246 61.111 9.77 0.00 44.83 4.49
2261 6952 2.435938 CGGGACCAATGACCCACG 60.436 66.667 13.71 0.00 45.64 4.94
2262 6953 2.045340 CCGGGACCAATGACCCAC 60.045 66.667 13.71 0.00 45.64 4.61
2263 6954 2.132089 GAACCGGGACCAATGACCCA 62.132 60.000 6.32 0.00 45.64 4.51
2264 6955 1.378119 GAACCGGGACCAATGACCC 60.378 63.158 6.32 5.62 42.37 4.46
2265 6956 1.743995 CGAACCGGGACCAATGACC 60.744 63.158 6.32 0.00 0.00 4.02
2267 6958 1.189524 AGACGAACCGGGACCAATGA 61.190 55.000 6.32 0.00 0.00 2.57
2269 6960 1.295423 CAGACGAACCGGGACCAAT 59.705 57.895 6.32 0.00 0.00 3.16
2270 6961 2.738480 CAGACGAACCGGGACCAA 59.262 61.111 6.32 0.00 0.00 3.67
2271 6962 3.307906 CCAGACGAACCGGGACCA 61.308 66.667 6.32 0.00 0.00 4.02
2272 6963 2.993264 TCCAGACGAACCGGGACC 60.993 66.667 6.32 0.00 0.00 4.46
2273 6964 2.260743 GTCCAGACGAACCGGGAC 59.739 66.667 6.32 9.54 42.60 4.46
2274 6965 2.141011 TAGGTCCAGACGAACCGGGA 62.141 60.000 6.32 0.00 40.63 5.14
2275 6966 1.041447 ATAGGTCCAGACGAACCGGG 61.041 60.000 6.32 0.00 40.63 5.73
2276 6967 0.822164 AATAGGTCCAGACGAACCGG 59.178 55.000 0.00 0.00 40.63 5.28
2277 6968 1.470979 CCAATAGGTCCAGACGAACCG 60.471 57.143 0.00 0.00 40.63 4.44
2278 6969 2.311124 CCAATAGGTCCAGACGAACC 57.689 55.000 0.00 0.00 35.69 3.62
2289 6980 0.843343 ACCAACCGGGACCAATAGGT 60.843 55.000 6.32 0.00 43.81 3.08
2290 6981 0.393808 CACCAACCGGGACCAATAGG 60.394 60.000 6.32 0.00 41.15 2.57
2291 6982 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
2292 6983 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
2293 6984 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
2299 6990 3.943691 TTCGTCCCACCAACCGGG 61.944 66.667 6.32 0.00 46.03 5.73
2300 6991 2.667199 GTTCGTCCCACCAACCGG 60.667 66.667 0.00 0.00 38.77 5.28
2301 6992 2.667199 GGTTCGTCCCACCAACCG 60.667 66.667 0.00 0.00 34.04 4.44
2302 6993 2.667199 CGGTTCGTCCCACCAACC 60.667 66.667 0.00 0.00 36.91 3.77
2303 6994 2.667199 CCGGTTCGTCCCACCAAC 60.667 66.667 0.00 0.00 33.36 3.77
2304 6995 3.943691 CCCGGTTCGTCCCACCAA 61.944 66.667 0.00 0.00 33.36 3.67
2305 6996 4.938074 TCCCGGTTCGTCCCACCA 62.938 66.667 0.00 0.00 33.36 4.17
2306 6997 4.383861 GTCCCGGTTCGTCCCACC 62.384 72.222 0.00 0.00 0.00 4.61
2307 6998 4.383861 GGTCCCGGTTCGTCCCAC 62.384 72.222 0.00 0.00 0.00 4.61
2308 6999 4.938074 TGGTCCCGGTTCGTCCCA 62.938 66.667 0.00 0.00 0.00 4.37
2309 7000 2.963101 ATTGGTCCCGGTTCGTCCC 61.963 63.158 0.00 0.00 0.00 4.46
2310 7001 1.743995 CATTGGTCCCGGTTCGTCC 60.744 63.158 0.00 0.00 0.00 4.79
2311 7002 1.743995 CCATTGGTCCCGGTTCGTC 60.744 63.158 0.00 0.00 0.00 4.20
2312 7003 2.349755 CCATTGGTCCCGGTTCGT 59.650 61.111 0.00 0.00 0.00 3.85
2313 7004 3.131478 GCCATTGGTCCCGGTTCG 61.131 66.667 0.00 0.00 0.00 3.95
2314 7005 2.754254 GGCCATTGGTCCCGGTTC 60.754 66.667 0.00 0.00 0.00 3.62
2315 7006 4.376170 GGGCCATTGGTCCCGGTT 62.376 66.667 15.98 0.00 42.67 4.44
2321 7012 2.514824 GAGCGAGGGCCATTGGTC 60.515 66.667 20.19 20.19 41.24 4.02
2322 7013 4.115199 GGAGCGAGGGCCATTGGT 62.115 66.667 9.56 9.56 41.24 3.67
2323 7014 3.801997 AGGAGCGAGGGCCATTGG 61.802 66.667 6.18 0.00 41.24 3.16
2324 7015 2.515523 CAGGAGCGAGGGCCATTG 60.516 66.667 6.18 1.23 41.24 2.82
2325 7016 3.801997 CCAGGAGCGAGGGCCATT 61.802 66.667 6.18 0.00 41.24 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.