Multiple sequence alignment - TraesCS6B01G359400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G359400 chr6B 100.000 2363 0 0 1 2363 631192368 631194730 0.000000e+00 4364.0
1 TraesCS6B01G359400 chr6B 84.534 1416 131 51 1 1390 631742029 631740676 0.000000e+00 1321.0
2 TraesCS6B01G359400 chr6B 83.265 1219 90 51 258 1390 631535623 631534433 0.000000e+00 1016.0
3 TraesCS6B01G359400 chr6B 86.748 815 56 32 803 1585 631246252 631245458 0.000000e+00 859.0
4 TraesCS6B01G359400 chr6B 93.738 527 27 6 248 769 631247039 631246514 0.000000e+00 785.0
5 TraesCS6B01G359400 chr6B 90.121 577 34 9 818 1390 631844074 631843517 0.000000e+00 728.0
6 TraesCS6B01G359400 chr6B 87.327 434 35 10 1858 2275 631245153 631244724 1.640000e-131 479.0
7 TraesCS6B01G359400 chr6B 94.393 107 3 3 1583 1687 631245274 631245169 6.760000e-36 161.0
8 TraesCS6B01G359400 chr6B 89.147 129 8 6 243 368 631846276 631846151 3.140000e-34 156.0
9 TraesCS6B01G359400 chr6B 91.228 57 1 3 1609 1662 630918911 630918856 9.060000e-10 75.0
10 TraesCS6B01G359400 chr6D 88.420 1494 84 42 248 1687 418770715 418769257 0.000000e+00 1718.0
11 TraesCS6B01G359400 chr6D 92.198 910 32 16 803 1687 418732796 418733691 0.000000e+00 1251.0
12 TraesCS6B01G359400 chr6D 82.277 1388 101 65 50 1333 418883900 418882554 0.000000e+00 1066.0
13 TraesCS6B01G359400 chr6D 94.280 507 17 4 1868 2363 418733731 418734236 0.000000e+00 765.0
14 TraesCS6B01G359400 chr6D 87.072 642 51 12 153 763 418732156 418732796 0.000000e+00 697.0
15 TraesCS6B01G359400 chr6D 86.364 66 6 3 1848 1911 418769260 418769196 4.210000e-08 69.4
16 TraesCS6B01G359400 chr6D 95.349 43 2 0 422 464 418944878 418944836 4.210000e-08 69.4
17 TraesCS6B01G359400 chr6A 88.711 1063 46 33 691 1686 562400795 562399740 0.000000e+00 1230.0
18 TraesCS6B01G359400 chr6A 85.975 1205 93 38 245 1394 562271217 562272400 0.000000e+00 1219.0
19 TraesCS6B01G359400 chr6A 83.307 1258 106 51 201 1390 562471301 562470080 0.000000e+00 1064.0
20 TraesCS6B01G359400 chr6A 85.584 770 50 22 643 1365 562488261 562487506 0.000000e+00 750.0
21 TraesCS6B01G359400 chr6A 85.526 456 42 16 248 697 562402390 562401953 2.770000e-124 455.0
22 TraesCS6B01G359400 chr6A 85.876 354 23 13 137 467 562249573 562249922 3.740000e-93 351.0
23 TraesCS6B01G359400 chr6A 79.888 358 37 20 2020 2350 562272941 562273290 1.830000e-56 230.0
24 TraesCS6B01G359400 chr6A 90.769 130 9 3 1 128 562471647 562471519 1.120000e-38 171.0
25 TraesCS6B01G359400 chr6A 81.746 126 13 6 1547 1662 291949382 291949257 1.930000e-16 97.1
26 TraesCS6B01G359400 chr6A 75.771 227 15 10 1476 1662 562272487 562272713 7.000000e-11 78.7
27 TraesCS6B01G359400 chr6A 95.122 41 2 0 1 41 562244292 562244332 5.450000e-07 65.8
28 TraesCS6B01G359400 chr2B 99.405 168 1 0 1683 1850 677207492 677207659 2.950000e-79 305.0
29 TraesCS6B01G359400 chr5B 100.000 162 0 0 1688 1849 47109062 47109223 1.370000e-77 300.0
30 TraesCS6B01G359400 chr2A 100.000 162 0 0 1688 1849 717561343 717561504 1.370000e-77 300.0
31 TraesCS6B01G359400 chr2A 100.000 162 0 0 1688 1849 738732379 738732218 1.370000e-77 300.0
32 TraesCS6B01G359400 chr2A 95.977 174 5 2 1688 1860 29600272 29600100 4.970000e-72 281.0
33 TraesCS6B01G359400 chr7B 99.383 162 1 0 1688 1849 444299347 444299186 6.390000e-76 294.0
34 TraesCS6B01G359400 chr7B 98.758 161 2 0 1689 1849 334452838 334452678 1.070000e-73 287.0
35 TraesCS6B01G359400 chr3B 99.383 162 1 0 1688 1849 199159 198998 6.390000e-76 294.0
36 TraesCS6B01G359400 chr4B 97.590 166 4 0 1684 1849 364047657 364047492 3.840000e-73 285.0
37 TraesCS6B01G359400 chr4D 83.186 113 14 3 2020 2128 125489805 125489916 5.370000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G359400 chr6B 631192368 631194730 2362 False 4364.000000 4364 100.000000 1 2363 1 chr6B.!!$F1 2362
1 TraesCS6B01G359400 chr6B 631740676 631742029 1353 True 1321.000000 1321 84.534000 1 1390 1 chr6B.!!$R3 1389
2 TraesCS6B01G359400 chr6B 631534433 631535623 1190 True 1016.000000 1016 83.265000 258 1390 1 chr6B.!!$R2 1132
3 TraesCS6B01G359400 chr6B 631244724 631247039 2315 True 571.000000 859 90.551500 248 2275 4 chr6B.!!$R4 2027
4 TraesCS6B01G359400 chr6B 631843517 631846276 2759 True 442.000000 728 89.634000 243 1390 2 chr6B.!!$R5 1147
5 TraesCS6B01G359400 chr6D 418882554 418883900 1346 True 1066.000000 1066 82.277000 50 1333 1 chr6D.!!$R1 1283
6 TraesCS6B01G359400 chr6D 418732156 418734236 2080 False 904.333333 1251 91.183333 153 2363 3 chr6D.!!$F1 2210
7 TraesCS6B01G359400 chr6D 418769196 418770715 1519 True 893.700000 1718 87.392000 248 1911 2 chr6D.!!$R3 1663
8 TraesCS6B01G359400 chr6A 562399740 562402390 2650 True 842.500000 1230 87.118500 248 1686 2 chr6A.!!$R3 1438
9 TraesCS6B01G359400 chr6A 562487506 562488261 755 True 750.000000 750 85.584000 643 1365 1 chr6A.!!$R2 722
10 TraesCS6B01G359400 chr6A 562470080 562471647 1567 True 617.500000 1064 87.038000 1 1390 2 chr6A.!!$R4 1389
11 TraesCS6B01G359400 chr6A 562271217 562273290 2073 False 509.233333 1219 80.544667 245 2350 3 chr6A.!!$F3 2105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
581 864 0.314302 CCTTACCTATCCCGCTCACG 59.686 60.0 0.0 0.0 39.67 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1833 5414 0.04109 ATCAAGGCCCCGTTTGGATT 59.959 50.0 0.0 0.0 37.49 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 2.576648 ACAACTAATCCCCACCCTCTTC 59.423 50.000 0.00 0.00 0.00 2.87
75 76 5.105853 ACTAATCCCCACCCTCTTCTTTTA 58.894 41.667 0.00 0.00 0.00 1.52
76 77 4.592997 AATCCCCACCCTCTTCTTTTAG 57.407 45.455 0.00 0.00 0.00 1.85
77 78 2.999928 TCCCCACCCTCTTCTTTTAGT 58.000 47.619 0.00 0.00 0.00 2.24
78 79 4.150516 TCCCCACCCTCTTCTTTTAGTA 57.849 45.455 0.00 0.00 0.00 1.82
79 80 4.101856 TCCCCACCCTCTTCTTTTAGTAG 58.898 47.826 0.00 0.00 0.00 2.57
80 81 3.370633 CCCCACCCTCTTCTTTTAGTAGC 60.371 52.174 0.00 0.00 0.00 3.58
81 82 3.263425 CCCACCCTCTTCTTTTAGTAGCA 59.737 47.826 0.00 0.00 0.00 3.49
88 91 7.093684 ACCCTCTTCTTTTAGTAGCAAGTAGAG 60.094 40.741 14.67 14.67 41.10 2.43
109 112 4.435425 AGACAAGCTACGTTTTACACACA 58.565 39.130 0.00 0.00 0.00 3.72
112 115 6.702723 AGACAAGCTACGTTTTACACACATAA 59.297 34.615 0.00 0.00 0.00 1.90
121 124 6.259167 ACGTTTTACACACATAACATGTCTGT 59.741 34.615 0.00 3.29 43.34 3.41
127 304 5.221843 ACACACATAACATGTCTGTAACCCT 60.222 40.000 12.24 0.00 39.99 4.34
171 358 5.310857 AGAGATAAACCCTGTTTGAGACCTT 59.689 40.000 2.60 0.00 0.00 3.50
172 359 5.316987 AGATAAACCCTGTTTGAGACCTTG 58.683 41.667 2.60 0.00 0.00 3.61
173 360 3.662759 AAACCCTGTTTGAGACCTTGA 57.337 42.857 0.00 0.00 0.00 3.02
174 361 3.662759 AACCCTGTTTGAGACCTTGAA 57.337 42.857 0.00 0.00 0.00 2.69
175 362 2.932261 ACCCTGTTTGAGACCTTGAAC 58.068 47.619 0.00 0.00 0.00 3.18
176 363 1.873591 CCCTGTTTGAGACCTTGAACG 59.126 52.381 0.00 0.00 0.00 3.95
177 364 1.873591 CCTGTTTGAGACCTTGAACGG 59.126 52.381 0.00 0.00 0.00 4.44
178 365 2.484770 CCTGTTTGAGACCTTGAACGGA 60.485 50.000 0.00 0.00 31.62 4.69
179 366 3.202906 CTGTTTGAGACCTTGAACGGAA 58.797 45.455 0.00 0.00 31.62 4.30
180 367 3.611970 TGTTTGAGACCTTGAACGGAAA 58.388 40.909 0.00 0.00 0.00 3.13
181 368 3.375922 TGTTTGAGACCTTGAACGGAAAC 59.624 43.478 0.00 0.00 0.00 2.78
182 369 2.992124 TGAGACCTTGAACGGAAACA 57.008 45.000 0.00 0.00 0.00 2.83
183 370 3.269538 TGAGACCTTGAACGGAAACAA 57.730 42.857 0.00 0.00 0.00 2.83
184 371 2.940410 TGAGACCTTGAACGGAAACAAC 59.060 45.455 0.00 0.00 0.00 3.32
185 372 2.940410 GAGACCTTGAACGGAAACAACA 59.060 45.455 0.00 0.00 0.00 3.33
220 407 4.441792 CCCAACAAAGAAAGAAACCTTGG 58.558 43.478 0.00 0.00 0.00 3.61
230 417 5.768662 AGAAAGAAACCTTGGCTAAACCTAC 59.231 40.000 0.00 0.00 40.22 3.18
277 464 2.266055 GAGGGTCGCTCCAACAGG 59.734 66.667 5.61 0.00 38.11 4.00
289 476 2.742053 CTCCAACAGGTACAATCCAACG 59.258 50.000 0.00 0.00 0.00 4.10
581 864 0.314302 CCTTACCTATCCCGCTCACG 59.686 60.000 0.00 0.00 39.67 4.35
800 3808 4.559704 CGGCGGCTTAATCTTCTAATCTCT 60.560 45.833 7.61 0.00 0.00 3.10
801 3809 4.688413 GGCGGCTTAATCTTCTAATCTCTG 59.312 45.833 0.00 0.00 0.00 3.35
843 4064 0.814410 TAAAAACCACCGCGAGTGCA 60.814 50.000 18.57 0.00 45.83 4.57
936 4186 0.321671 TCTCTTAGCACCAGCACCAC 59.678 55.000 0.00 0.00 45.49 4.16
1218 4492 3.744719 CCCTGCTCCGTCGACGAA 61.745 66.667 37.65 19.79 43.02 3.85
1365 4653 0.543749 CCAAGGTCACCTCCTGATCC 59.456 60.000 0.00 0.00 37.93 3.36
1674 5251 0.600782 GTCGTCACAGCCCGGTTTAA 60.601 55.000 0.00 0.00 0.00 1.52
1687 5268 5.358725 AGCCCGGTTTAATATTACAACTTGG 59.641 40.000 0.00 15.03 0.00 3.61
1688 5269 5.450826 GCCCGGTTTAATATTACAACTTGGG 60.451 44.000 24.00 24.00 38.27 4.12
1690 5271 5.450826 CCGGTTTAATATTACAACTTGGGGC 60.451 44.000 14.58 0.00 0.00 5.80
1691 5272 5.584442 GGTTTAATATTACAACTTGGGGCG 58.416 41.667 14.58 0.00 0.00 6.13
1692 5273 4.904253 TTAATATTACAACTTGGGGCGC 57.096 40.909 0.00 0.00 0.00 6.53
1693 5274 1.305201 ATATTACAACTTGGGGCGCG 58.695 50.000 0.00 0.00 0.00 6.86
1694 5275 1.370587 TATTACAACTTGGGGCGCGC 61.371 55.000 25.94 25.94 0.00 6.86
1695 5276 3.717695 TATTACAACTTGGGGCGCGCT 62.718 52.381 32.29 10.26 0.00 5.92
1696 5277 3.835790 TACAACTTGGGGCGCGCTT 62.836 57.895 32.29 13.60 0.00 4.68
1697 5278 4.705519 CAACTTGGGGCGCGCTTG 62.706 66.667 32.29 21.69 0.00 4.01
1701 5282 4.418328 TTGGGGCGCGCTTGGTAT 62.418 61.111 32.29 0.00 0.00 2.73
1702 5283 2.933878 CTTGGGGCGCGCTTGGTATA 62.934 60.000 32.29 9.15 0.00 1.47
1703 5284 2.665185 GGGGCGCGCTTGGTATAG 60.665 66.667 32.29 0.00 0.00 1.31
1704 5285 2.665185 GGGCGCGCTTGGTATAGG 60.665 66.667 32.29 0.00 0.00 2.57
1705 5286 2.108362 GGCGCGCTTGGTATAGGT 59.892 61.111 32.29 0.00 0.00 3.08
1706 5287 2.244651 GGCGCGCTTGGTATAGGTG 61.245 63.158 32.29 0.00 0.00 4.00
1707 5288 1.520787 GCGCGCTTGGTATAGGTGT 60.521 57.895 26.67 0.00 0.00 4.16
1708 5289 0.249155 GCGCGCTTGGTATAGGTGTA 60.249 55.000 26.67 0.00 0.00 2.90
1709 5290 1.803625 GCGCGCTTGGTATAGGTGTAA 60.804 52.381 26.67 0.00 0.00 2.41
1710 5291 2.750948 CGCGCTTGGTATAGGTGTAAT 58.249 47.619 5.56 0.00 0.00 1.89
1711 5292 3.128349 CGCGCTTGGTATAGGTGTAATT 58.872 45.455 5.56 0.00 0.00 1.40
1712 5293 3.183775 CGCGCTTGGTATAGGTGTAATTC 59.816 47.826 5.56 0.00 0.00 2.17
1713 5294 4.124238 GCGCTTGGTATAGGTGTAATTCA 58.876 43.478 0.00 0.00 0.00 2.57
1714 5295 4.573201 GCGCTTGGTATAGGTGTAATTCAA 59.427 41.667 0.00 0.00 0.00 2.69
1715 5296 5.238650 GCGCTTGGTATAGGTGTAATTCAAT 59.761 40.000 0.00 0.00 0.00 2.57
1716 5297 6.425721 GCGCTTGGTATAGGTGTAATTCAATA 59.574 38.462 0.00 0.00 0.00 1.90
1717 5298 7.570691 GCGCTTGGTATAGGTGTAATTCAATAC 60.571 40.741 0.00 0.00 0.00 1.89
1718 5299 7.439955 CGCTTGGTATAGGTGTAATTCAATACA 59.560 37.037 0.00 0.00 33.52 2.29
1719 5300 8.774586 GCTTGGTATAGGTGTAATTCAATACAG 58.225 37.037 0.00 0.00 36.51 2.74
1722 5303 8.647796 TGGTATAGGTGTAATTCAATACAGAGG 58.352 37.037 0.00 0.00 36.51 3.69
1723 5304 8.648693 GGTATAGGTGTAATTCAATACAGAGGT 58.351 37.037 0.00 0.00 36.51 3.85
1724 5305 9.477484 GTATAGGTGTAATTCAATACAGAGGTG 57.523 37.037 0.00 0.00 36.51 4.00
1725 5306 6.374417 AGGTGTAATTCAATACAGAGGTGT 57.626 37.500 0.00 0.00 36.51 4.16
1726 5307 7.490657 AGGTGTAATTCAATACAGAGGTGTA 57.509 36.000 0.00 0.00 43.43 2.90
1727 5308 7.913789 AGGTGTAATTCAATACAGAGGTGTAA 58.086 34.615 0.00 0.00 42.54 2.41
1728 5309 8.041323 AGGTGTAATTCAATACAGAGGTGTAAG 58.959 37.037 0.00 0.00 42.54 2.34
1729 5310 8.038944 GGTGTAATTCAATACAGAGGTGTAAGA 58.961 37.037 0.00 0.00 42.54 2.10
1730 5311 9.601217 GTGTAATTCAATACAGAGGTGTAAGAT 57.399 33.333 0.00 0.00 42.54 2.40
1737 5318 9.653287 TCAATACAGAGGTGTAAGATTTACAAG 57.347 33.333 3.44 0.00 42.54 3.16
1738 5319 9.436957 CAATACAGAGGTGTAAGATTTACAAGT 57.563 33.333 3.44 2.06 42.54 3.16
1739 5320 9.436957 AATACAGAGGTGTAAGATTTACAAGTG 57.563 33.333 3.44 2.74 42.54 3.16
1740 5321 6.827727 ACAGAGGTGTAAGATTTACAAGTGT 58.172 36.000 3.44 3.24 34.05 3.55
1741 5322 7.959175 ACAGAGGTGTAAGATTTACAAGTGTA 58.041 34.615 3.44 0.00 34.05 2.90
1742 5323 8.594550 ACAGAGGTGTAAGATTTACAAGTGTAT 58.405 33.333 3.44 0.00 34.05 2.29
1743 5324 9.436957 CAGAGGTGTAAGATTTACAAGTGTATT 57.563 33.333 3.44 0.00 0.00 1.89
1752 5333 8.051901 AGATTTACAAGTGTATTTTACTGGGC 57.948 34.615 0.00 0.00 0.00 5.36
1753 5334 7.668052 AGATTTACAAGTGTATTTTACTGGGCA 59.332 33.333 0.00 0.00 0.00 5.36
1754 5335 7.768807 TTTACAAGTGTATTTTACTGGGCAT 57.231 32.000 0.00 0.00 0.00 4.40
1755 5336 5.643379 ACAAGTGTATTTTACTGGGCATG 57.357 39.130 0.00 0.00 0.00 4.06
1756 5337 5.321102 ACAAGTGTATTTTACTGGGCATGA 58.679 37.500 0.00 0.00 0.00 3.07
1757 5338 5.183140 ACAAGTGTATTTTACTGGGCATGAC 59.817 40.000 0.00 0.00 0.00 3.06
1758 5339 5.179452 AGTGTATTTTACTGGGCATGACT 57.821 39.130 0.00 0.00 0.00 3.41
1759 5340 4.943705 AGTGTATTTTACTGGGCATGACTG 59.056 41.667 0.00 0.00 0.00 3.51
1760 5341 4.700213 GTGTATTTTACTGGGCATGACTGT 59.300 41.667 0.00 0.21 0.00 3.55
1761 5342 5.183140 GTGTATTTTACTGGGCATGACTGTT 59.817 40.000 0.00 0.00 0.00 3.16
1762 5343 5.772672 TGTATTTTACTGGGCATGACTGTTT 59.227 36.000 0.00 0.00 0.00 2.83
1763 5344 5.806654 ATTTTACTGGGCATGACTGTTTT 57.193 34.783 0.00 0.00 0.00 2.43
1764 5345 4.846779 TTTACTGGGCATGACTGTTTTC 57.153 40.909 0.00 0.00 0.00 2.29
1765 5346 1.620822 ACTGGGCATGACTGTTTTCC 58.379 50.000 0.00 0.00 0.00 3.13
1766 5347 0.523072 CTGGGCATGACTGTTTTCCG 59.477 55.000 0.00 0.00 0.00 4.30
1767 5348 0.893270 TGGGCATGACTGTTTTCCGG 60.893 55.000 0.00 0.00 0.00 5.14
1768 5349 1.212751 GGCATGACTGTTTTCCGGC 59.787 57.895 0.00 0.00 0.00 6.13
1769 5350 1.244019 GGCATGACTGTTTTCCGGCT 61.244 55.000 0.00 0.00 0.00 5.52
1770 5351 0.109597 GCATGACTGTTTTCCGGCTG 60.110 55.000 0.00 0.00 0.00 4.85
1771 5352 0.523072 CATGACTGTTTTCCGGCTGG 59.477 55.000 4.71 4.71 0.00 4.85
1772 5353 0.400213 ATGACTGTTTTCCGGCTGGA 59.600 50.000 11.27 11.27 44.61 3.86
1781 5362 2.955609 TCCGGCTGGAAATGAAACC 58.044 52.632 13.31 0.00 42.85 3.27
1782 5363 0.958382 TCCGGCTGGAAATGAAACCG 60.958 55.000 13.31 0.00 42.85 4.44
1783 5364 0.958382 CCGGCTGGAAATGAAACCGA 60.958 55.000 5.28 0.00 43.19 4.69
1784 5365 0.168128 CGGCTGGAAATGAAACCGAC 59.832 55.000 0.00 0.00 43.19 4.79
1785 5366 0.526211 GGCTGGAAATGAAACCGACC 59.474 55.000 0.00 0.00 0.00 4.79
1786 5367 0.168128 GCTGGAAATGAAACCGACCG 59.832 55.000 0.00 0.00 0.00 4.79
1787 5368 0.802494 CTGGAAATGAAACCGACCGG 59.198 55.000 6.94 6.94 42.03 5.28
1797 5378 4.415332 CCGACCGGTGGAGACGTG 62.415 72.222 19.32 2.70 0.00 4.49
1798 5379 3.667282 CGACCGGTGGAGACGTGT 61.667 66.667 14.63 0.00 0.00 4.49
1799 5380 2.327343 CGACCGGTGGAGACGTGTA 61.327 63.158 14.63 0.00 0.00 2.90
1800 5381 1.651240 CGACCGGTGGAGACGTGTAT 61.651 60.000 14.63 0.00 0.00 2.29
1801 5382 0.529378 GACCGGTGGAGACGTGTATT 59.471 55.000 14.63 0.00 0.00 1.89
1802 5383 0.971386 ACCGGTGGAGACGTGTATTT 59.029 50.000 6.12 0.00 0.00 1.40
1803 5384 1.067354 ACCGGTGGAGACGTGTATTTC 60.067 52.381 6.12 0.00 0.00 2.17
1804 5385 1.203994 CCGGTGGAGACGTGTATTTCT 59.796 52.381 0.00 0.00 0.00 2.52
1805 5386 2.353406 CCGGTGGAGACGTGTATTTCTT 60.353 50.000 0.00 0.00 0.00 2.52
1806 5387 3.323243 CGGTGGAGACGTGTATTTCTTT 58.677 45.455 0.00 0.00 0.00 2.52
1807 5388 3.744426 CGGTGGAGACGTGTATTTCTTTT 59.256 43.478 0.00 0.00 0.00 2.27
1808 5389 4.925054 CGGTGGAGACGTGTATTTCTTTTA 59.075 41.667 0.00 0.00 0.00 1.52
1809 5390 5.164022 CGGTGGAGACGTGTATTTCTTTTAC 60.164 44.000 0.00 0.00 0.00 2.01
1810 5391 5.697633 GGTGGAGACGTGTATTTCTTTTACA 59.302 40.000 0.00 0.00 0.00 2.41
1811 5392 6.128634 GGTGGAGACGTGTATTTCTTTTACAG 60.129 42.308 0.00 0.00 30.54 2.74
1812 5393 5.929992 TGGAGACGTGTATTTCTTTTACAGG 59.070 40.000 0.00 0.00 39.88 4.00
1813 5394 5.930569 GGAGACGTGTATTTCTTTTACAGGT 59.069 40.000 0.00 8.42 45.93 4.00
1814 5395 6.128634 GGAGACGTGTATTTCTTTTACAGGTG 60.129 42.308 12.29 0.00 44.31 4.00
1815 5396 6.285990 AGACGTGTATTTCTTTTACAGGTGT 58.714 36.000 12.29 7.07 44.31 4.16
1816 5397 7.436118 AGACGTGTATTTCTTTTACAGGTGTA 58.564 34.615 12.29 0.00 44.31 2.90
1817 5398 8.092687 AGACGTGTATTTCTTTTACAGGTGTAT 58.907 33.333 12.29 0.00 44.31 2.29
1818 5399 8.611654 ACGTGTATTTCTTTTACAGGTGTATT 57.388 30.769 8.00 0.00 43.31 1.89
1819 5400 9.709495 ACGTGTATTTCTTTTACAGGTGTATTA 57.291 29.630 8.00 0.00 43.31 0.98
1820 5401 9.962759 CGTGTATTTCTTTTACAGGTGTATTAC 57.037 33.333 0.00 0.00 33.14 1.89
1830 5411 9.719279 TTTTACAGGTGTATTACAAAGAAAACG 57.281 29.630 0.00 0.00 0.00 3.60
1831 5412 5.754778 ACAGGTGTATTACAAAGAAAACGC 58.245 37.500 0.00 0.00 0.00 4.84
1832 5413 5.529800 ACAGGTGTATTACAAAGAAAACGCT 59.470 36.000 0.00 0.00 0.00 5.07
1833 5414 6.707161 ACAGGTGTATTACAAAGAAAACGCTA 59.293 34.615 0.00 0.00 0.00 4.26
1834 5415 7.227116 ACAGGTGTATTACAAAGAAAACGCTAA 59.773 33.333 0.00 0.00 0.00 3.09
1835 5416 8.234546 CAGGTGTATTACAAAGAAAACGCTAAT 58.765 33.333 0.00 0.00 0.00 1.73
1836 5417 8.448615 AGGTGTATTACAAAGAAAACGCTAATC 58.551 33.333 0.00 0.00 0.00 1.75
1837 5418 7.695201 GGTGTATTACAAAGAAAACGCTAATCC 59.305 37.037 0.00 0.00 0.00 3.01
1838 5419 8.231837 GTGTATTACAAAGAAAACGCTAATCCA 58.768 33.333 0.00 0.00 0.00 3.41
1839 5420 8.784994 TGTATTACAAAGAAAACGCTAATCCAA 58.215 29.630 0.00 0.00 0.00 3.53
1840 5421 9.615295 GTATTACAAAGAAAACGCTAATCCAAA 57.385 29.630 0.00 0.00 0.00 3.28
1841 5422 7.917720 TTACAAAGAAAACGCTAATCCAAAC 57.082 32.000 0.00 0.00 0.00 2.93
1842 5423 4.973663 ACAAAGAAAACGCTAATCCAAACG 59.026 37.500 0.00 0.00 0.00 3.60
1843 5424 3.824414 AGAAAACGCTAATCCAAACGG 57.176 42.857 0.00 0.00 0.00 4.44
1844 5425 2.486592 AGAAAACGCTAATCCAAACGGG 59.513 45.455 0.00 0.00 38.37 5.28
1845 5426 1.170442 AAACGCTAATCCAAACGGGG 58.830 50.000 0.00 0.00 37.22 5.73
1846 5427 1.310216 AACGCTAATCCAAACGGGGC 61.310 55.000 0.00 0.00 37.22 5.80
1856 5437 0.609131 CAAACGGGGCCTTGATCTGT 60.609 55.000 0.84 0.00 0.00 3.41
1940 5544 2.504367 AGTTCGGCAGTGCTAAAATGT 58.496 42.857 16.11 0.00 0.00 2.71
1946 5550 3.181497 CGGCAGTGCTAAAATGTTATGCT 60.181 43.478 16.11 0.00 33.09 3.79
2067 5733 2.134354 TCATGATGCATGGGGTCCTAA 58.866 47.619 2.46 0.00 41.66 2.69
2095 5761 1.342174 TGAGGTACCGCGTTTCTTTCT 59.658 47.619 11.29 0.00 0.00 2.52
2171 5852 1.352083 TTCAGTGGAGGAGGTGAAGG 58.648 55.000 0.00 0.00 0.00 3.46
2187 5868 3.322254 GTGAAGGAAGAGGTGAGAACAGA 59.678 47.826 0.00 0.00 0.00 3.41
2247 5939 1.012302 TCCCCTACCCTACCTCTCTCT 59.988 57.143 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.710326 ATGTCATCATGAGCATGTTGC 57.290 42.857 13.90 10.65 38.03 4.17
70 71 7.093992 AGCTTGTCTCTACTTGCTACTAAAAG 58.906 38.462 0.00 0.00 34.68 2.27
75 76 4.095185 CGTAGCTTGTCTCTACTTGCTACT 59.905 45.833 17.06 0.00 45.24 2.57
76 77 4.142643 ACGTAGCTTGTCTCTACTTGCTAC 60.143 45.833 11.48 11.48 44.71 3.58
77 78 4.008330 ACGTAGCTTGTCTCTACTTGCTA 58.992 43.478 0.00 0.00 36.66 3.49
78 79 2.820787 ACGTAGCTTGTCTCTACTTGCT 59.179 45.455 0.00 0.00 38.07 3.91
79 80 3.219052 ACGTAGCTTGTCTCTACTTGC 57.781 47.619 0.00 0.00 35.47 4.01
80 81 6.639686 TGTAAAACGTAGCTTGTCTCTACTTG 59.360 38.462 0.00 0.00 35.47 3.16
81 82 6.640092 GTGTAAAACGTAGCTTGTCTCTACTT 59.360 38.462 0.00 0.00 35.47 2.24
88 91 4.782252 TGTGTGTAAAACGTAGCTTGTC 57.218 40.909 0.00 0.00 0.00 3.18
109 112 7.914427 TCATCTAGGGTTACAGACATGTTAT 57.086 36.000 0.00 0.00 41.01 1.89
112 115 6.620877 TTTCATCTAGGGTTACAGACATGT 57.379 37.500 0.00 0.00 43.76 3.21
121 124 4.972568 TGGGCTGTATTTCATCTAGGGTTA 59.027 41.667 0.00 0.00 0.00 2.85
127 304 3.958147 TCTCGTGGGCTGTATTTCATCTA 59.042 43.478 0.00 0.00 0.00 1.98
171 358 2.360844 TCTGCTTGTTGTTTCCGTTCA 58.639 42.857 0.00 0.00 0.00 3.18
172 359 3.414549 TTCTGCTTGTTGTTTCCGTTC 57.585 42.857 0.00 0.00 0.00 3.95
173 360 3.428862 CCTTTCTGCTTGTTGTTTCCGTT 60.429 43.478 0.00 0.00 0.00 4.44
174 361 2.099098 CCTTTCTGCTTGTTGTTTCCGT 59.901 45.455 0.00 0.00 0.00 4.69
175 362 2.543653 CCCTTTCTGCTTGTTGTTTCCG 60.544 50.000 0.00 0.00 0.00 4.30
176 363 2.803133 GCCCTTTCTGCTTGTTGTTTCC 60.803 50.000 0.00 0.00 0.00 3.13
177 364 2.473816 GCCCTTTCTGCTTGTTGTTTC 58.526 47.619 0.00 0.00 0.00 2.78
178 365 1.138859 GGCCCTTTCTGCTTGTTGTTT 59.861 47.619 0.00 0.00 0.00 2.83
179 366 0.752658 GGCCCTTTCTGCTTGTTGTT 59.247 50.000 0.00 0.00 0.00 2.83
180 367 1.115326 GGGCCCTTTCTGCTTGTTGT 61.115 55.000 17.04 0.00 0.00 3.32
181 368 1.667722 GGGCCCTTTCTGCTTGTTG 59.332 57.895 17.04 0.00 0.00 3.33
182 369 1.533994 GGGGCCCTTTCTGCTTGTT 60.534 57.895 24.38 0.00 0.00 2.83
183 370 2.118294 GGGGCCCTTTCTGCTTGT 59.882 61.111 24.38 0.00 0.00 3.16
184 371 1.533753 TTGGGGCCCTTTCTGCTTG 60.534 57.895 25.93 0.00 0.00 4.01
185 372 1.533994 GTTGGGGCCCTTTCTGCTT 60.534 57.895 25.93 0.00 0.00 3.91
220 407 3.626217 CGGATTTGGGAAGTAGGTTTAGC 59.374 47.826 0.00 0.00 0.00 3.09
230 417 3.821033 AGTTCTTGTTCGGATTTGGGAAG 59.179 43.478 0.00 0.00 0.00 3.46
289 476 0.449388 CTTTGCTCATCGCCCAACTC 59.551 55.000 0.00 0.00 38.05 3.01
779 3783 4.688413 CCAGAGATTAGAAGATTAAGCCGC 59.312 45.833 0.00 0.00 0.00 6.53
800 3808 1.303074 CTGCTTCTGCTTGGCTCCA 60.303 57.895 0.00 0.00 40.48 3.86
801 3809 1.303155 ACTGCTTCTGCTTGGCTCC 60.303 57.895 0.00 0.00 40.48 4.70
1158 4432 0.680601 TGTAGCCATACGTGTCCCGA 60.681 55.000 0.00 0.00 40.70 5.14
1365 4653 1.517257 GCTCGATGGTCTGTCGGTG 60.517 63.158 0.00 0.00 39.45 4.94
1474 4786 5.295292 GCCTCTCTATGTACGTGTAGTGTAA 59.705 44.000 0.00 0.00 0.00 2.41
1674 5251 1.305201 CGCGCCCCAAGTTGTAATAT 58.695 50.000 0.00 0.00 0.00 1.28
1687 5268 2.665185 CCTATACCAAGCGCGCCC 60.665 66.667 30.33 0.16 0.00 6.13
1688 5269 2.108362 ACCTATACCAAGCGCGCC 59.892 61.111 30.33 10.31 0.00 6.53
1690 5271 2.212869 TTACACCTATACCAAGCGCG 57.787 50.000 0.00 0.00 0.00 6.86
1691 5272 4.124238 TGAATTACACCTATACCAAGCGC 58.876 43.478 0.00 0.00 0.00 5.92
1692 5273 6.861065 ATTGAATTACACCTATACCAAGCG 57.139 37.500 0.00 0.00 0.00 4.68
1693 5274 8.671384 TGTATTGAATTACACCTATACCAAGC 57.329 34.615 0.00 0.00 0.00 4.01
1696 5277 8.647796 CCTCTGTATTGAATTACACCTATACCA 58.352 37.037 0.00 0.00 0.00 3.25
1697 5278 8.648693 ACCTCTGTATTGAATTACACCTATACC 58.351 37.037 0.00 0.00 0.00 2.73
1698 5279 9.477484 CACCTCTGTATTGAATTACACCTATAC 57.523 37.037 0.00 0.00 0.00 1.47
1699 5280 9.209048 ACACCTCTGTATTGAATTACACCTATA 57.791 33.333 0.00 0.00 0.00 1.31
1700 5281 8.090788 ACACCTCTGTATTGAATTACACCTAT 57.909 34.615 0.00 0.00 0.00 2.57
1701 5282 7.490657 ACACCTCTGTATTGAATTACACCTA 57.509 36.000 0.00 0.00 0.00 3.08
1702 5283 6.374417 ACACCTCTGTATTGAATTACACCT 57.626 37.500 0.00 0.00 0.00 4.00
1703 5284 8.038944 TCTTACACCTCTGTATTGAATTACACC 58.961 37.037 0.00 0.00 32.70 4.16
1704 5285 8.997621 TCTTACACCTCTGTATTGAATTACAC 57.002 34.615 0.00 0.00 32.70 2.90
1711 5292 9.653287 CTTGTAAATCTTACACCTCTGTATTGA 57.347 33.333 0.00 0.00 32.70 2.57
1712 5293 9.436957 ACTTGTAAATCTTACACCTCTGTATTG 57.563 33.333 0.00 0.00 32.70 1.90
1713 5294 9.436957 CACTTGTAAATCTTACACCTCTGTATT 57.563 33.333 0.00 0.00 32.70 1.89
1714 5295 8.594550 ACACTTGTAAATCTTACACCTCTGTAT 58.405 33.333 0.00 0.00 32.70 2.29
1715 5296 7.959175 ACACTTGTAAATCTTACACCTCTGTA 58.041 34.615 0.00 0.00 0.00 2.74
1716 5297 6.827727 ACACTTGTAAATCTTACACCTCTGT 58.172 36.000 0.00 0.00 0.00 3.41
1717 5298 9.436957 AATACACTTGTAAATCTTACACCTCTG 57.563 33.333 0.00 0.00 33.76 3.35
1726 5307 8.520351 GCCCAGTAAAATACACTTGTAAATCTT 58.480 33.333 0.00 0.00 33.76 2.40
1727 5308 7.668052 TGCCCAGTAAAATACACTTGTAAATCT 59.332 33.333 0.00 0.00 33.76 2.40
1728 5309 7.822658 TGCCCAGTAAAATACACTTGTAAATC 58.177 34.615 0.00 0.00 33.76 2.17
1729 5310 7.768807 TGCCCAGTAAAATACACTTGTAAAT 57.231 32.000 0.00 0.00 33.76 1.40
1730 5311 7.448777 TCATGCCCAGTAAAATACACTTGTAAA 59.551 33.333 0.00 0.00 33.76 2.01
1731 5312 6.943146 TCATGCCCAGTAAAATACACTTGTAA 59.057 34.615 0.00 0.00 33.76 2.41
1732 5313 6.373216 GTCATGCCCAGTAAAATACACTTGTA 59.627 38.462 0.00 0.00 34.67 2.41
1733 5314 5.183140 GTCATGCCCAGTAAAATACACTTGT 59.817 40.000 0.00 0.00 0.00 3.16
1734 5315 5.415701 AGTCATGCCCAGTAAAATACACTTG 59.584 40.000 0.00 0.00 0.00 3.16
1735 5316 5.415701 CAGTCATGCCCAGTAAAATACACTT 59.584 40.000 0.00 0.00 0.00 3.16
1736 5317 4.943705 CAGTCATGCCCAGTAAAATACACT 59.056 41.667 0.00 0.00 0.00 3.55
1737 5318 4.700213 ACAGTCATGCCCAGTAAAATACAC 59.300 41.667 0.00 0.00 0.00 2.90
1738 5319 4.917385 ACAGTCATGCCCAGTAAAATACA 58.083 39.130 0.00 0.00 0.00 2.29
1739 5320 5.897377 AACAGTCATGCCCAGTAAAATAC 57.103 39.130 0.00 0.00 0.00 1.89
1740 5321 6.071616 GGAAAACAGTCATGCCCAGTAAAATA 60.072 38.462 0.00 0.00 0.00 1.40
1741 5322 5.279456 GGAAAACAGTCATGCCCAGTAAAAT 60.279 40.000 0.00 0.00 0.00 1.82
1742 5323 4.038642 GGAAAACAGTCATGCCCAGTAAAA 59.961 41.667 0.00 0.00 0.00 1.52
1743 5324 3.572255 GGAAAACAGTCATGCCCAGTAAA 59.428 43.478 0.00 0.00 0.00 2.01
1744 5325 3.153919 GGAAAACAGTCATGCCCAGTAA 58.846 45.455 0.00 0.00 0.00 2.24
1745 5326 2.790433 GGAAAACAGTCATGCCCAGTA 58.210 47.619 0.00 0.00 0.00 2.74
1746 5327 1.620822 GGAAAACAGTCATGCCCAGT 58.379 50.000 0.00 0.00 0.00 4.00
1747 5328 0.523072 CGGAAAACAGTCATGCCCAG 59.477 55.000 0.00 0.00 0.00 4.45
1748 5329 0.893270 CCGGAAAACAGTCATGCCCA 60.893 55.000 0.00 0.00 0.00 5.36
1749 5330 1.883021 CCGGAAAACAGTCATGCCC 59.117 57.895 0.00 0.00 0.00 5.36
1750 5331 1.212751 GCCGGAAAACAGTCATGCC 59.787 57.895 5.05 0.00 0.00 4.40
1751 5332 0.109597 CAGCCGGAAAACAGTCATGC 60.110 55.000 5.05 0.00 0.00 4.06
1752 5333 0.523072 CCAGCCGGAAAACAGTCATG 59.477 55.000 5.05 0.00 0.00 3.07
1753 5334 0.400213 TCCAGCCGGAAAACAGTCAT 59.600 50.000 5.05 0.00 38.83 3.06
1754 5335 1.833606 TCCAGCCGGAAAACAGTCA 59.166 52.632 5.05 0.00 38.83 3.41
1755 5336 4.792087 TCCAGCCGGAAAACAGTC 57.208 55.556 5.05 0.00 38.83 3.51
1763 5344 0.958382 CGGTTTCATTTCCAGCCGGA 60.958 55.000 5.05 0.00 40.60 5.14
1764 5345 0.958382 TCGGTTTCATTTCCAGCCGG 60.958 55.000 0.00 0.00 39.64 6.13
1765 5346 0.168128 GTCGGTTTCATTTCCAGCCG 59.832 55.000 0.00 0.00 40.43 5.52
1766 5347 0.526211 GGTCGGTTTCATTTCCAGCC 59.474 55.000 0.00 0.00 0.00 4.85
1767 5348 0.168128 CGGTCGGTTTCATTTCCAGC 59.832 55.000 0.00 0.00 0.00 4.85
1768 5349 0.802494 CCGGTCGGTTTCATTTCCAG 59.198 55.000 0.55 0.00 0.00 3.86
1769 5350 2.935505 CCGGTCGGTTTCATTTCCA 58.064 52.632 0.55 0.00 0.00 3.53
1780 5361 4.415332 CACGTCTCCACCGGTCGG 62.415 72.222 2.59 10.72 42.03 4.79
1781 5362 1.651240 ATACACGTCTCCACCGGTCG 61.651 60.000 2.59 7.78 0.00 4.79
1782 5363 0.529378 AATACACGTCTCCACCGGTC 59.471 55.000 2.59 0.00 0.00 4.79
1783 5364 0.971386 AAATACACGTCTCCACCGGT 59.029 50.000 0.00 0.00 0.00 5.28
1784 5365 1.203994 AGAAATACACGTCTCCACCGG 59.796 52.381 0.00 0.00 0.00 5.28
1785 5366 2.649331 AGAAATACACGTCTCCACCG 57.351 50.000 0.00 0.00 0.00 4.94
1786 5367 5.697633 TGTAAAAGAAATACACGTCTCCACC 59.302 40.000 0.00 0.00 0.00 4.61
1787 5368 6.128634 CCTGTAAAAGAAATACACGTCTCCAC 60.129 42.308 0.00 0.00 0.00 4.02
1788 5369 5.929992 CCTGTAAAAGAAATACACGTCTCCA 59.070 40.000 0.00 0.00 0.00 3.86
1789 5370 5.930569 ACCTGTAAAAGAAATACACGTCTCC 59.069 40.000 0.00 0.00 0.00 3.71
1790 5371 6.423001 ACACCTGTAAAAGAAATACACGTCTC 59.577 38.462 0.00 0.00 0.00 3.36
1791 5372 6.285990 ACACCTGTAAAAGAAATACACGTCT 58.714 36.000 0.00 0.00 0.00 4.18
1792 5373 6.535274 ACACCTGTAAAAGAAATACACGTC 57.465 37.500 0.00 0.00 0.00 4.34
1793 5374 8.611654 AATACACCTGTAAAAGAAATACACGT 57.388 30.769 0.00 0.00 33.76 4.49
1794 5375 9.962759 GTAATACACCTGTAAAAGAAATACACG 57.037 33.333 0.00 0.00 33.76 4.49
1804 5385 9.719279 CGTTTTCTTTGTAATACACCTGTAAAA 57.281 29.630 0.00 0.00 33.76 1.52
1805 5386 7.856894 GCGTTTTCTTTGTAATACACCTGTAAA 59.143 33.333 0.00 0.00 33.76 2.01
1806 5387 7.227116 AGCGTTTTCTTTGTAATACACCTGTAA 59.773 33.333 0.00 0.00 33.76 2.41
1807 5388 6.707161 AGCGTTTTCTTTGTAATACACCTGTA 59.293 34.615 0.00 0.00 34.67 2.74
1808 5389 5.529800 AGCGTTTTCTTTGTAATACACCTGT 59.470 36.000 0.00 0.00 0.00 4.00
1809 5390 5.997385 AGCGTTTTCTTTGTAATACACCTG 58.003 37.500 0.00 0.00 0.00 4.00
1810 5391 7.733402 TTAGCGTTTTCTTTGTAATACACCT 57.267 32.000 0.00 0.00 0.00 4.00
1811 5392 7.695201 GGATTAGCGTTTTCTTTGTAATACACC 59.305 37.037 0.00 0.00 0.00 4.16
1812 5393 8.231837 TGGATTAGCGTTTTCTTTGTAATACAC 58.768 33.333 0.00 0.00 0.00 2.90
1813 5394 8.325421 TGGATTAGCGTTTTCTTTGTAATACA 57.675 30.769 0.00 0.00 0.00 2.29
1814 5395 9.615295 TTTGGATTAGCGTTTTCTTTGTAATAC 57.385 29.630 0.00 0.00 0.00 1.89
1815 5396 9.615295 GTTTGGATTAGCGTTTTCTTTGTAATA 57.385 29.630 0.00 0.00 0.00 0.98
1816 5397 7.325097 CGTTTGGATTAGCGTTTTCTTTGTAAT 59.675 33.333 0.00 0.00 0.00 1.89
1817 5398 6.633634 CGTTTGGATTAGCGTTTTCTTTGTAA 59.366 34.615 0.00 0.00 0.00 2.41
1818 5399 6.137415 CGTTTGGATTAGCGTTTTCTTTGTA 58.863 36.000 0.00 0.00 0.00 2.41
1819 5400 4.973663 CGTTTGGATTAGCGTTTTCTTTGT 59.026 37.500 0.00 0.00 0.00 2.83
1820 5401 4.381566 CCGTTTGGATTAGCGTTTTCTTTG 59.618 41.667 0.00 0.00 37.49 2.77
1821 5402 4.542735 CCGTTTGGATTAGCGTTTTCTTT 58.457 39.130 0.00 0.00 37.49 2.52
1822 5403 3.057806 CCCGTTTGGATTAGCGTTTTCTT 60.058 43.478 0.00 0.00 37.49 2.52
1823 5404 2.486592 CCCGTTTGGATTAGCGTTTTCT 59.513 45.455 0.00 0.00 37.49 2.52
1824 5405 2.414957 CCCCGTTTGGATTAGCGTTTTC 60.415 50.000 0.00 0.00 37.49 2.29
1825 5406 1.542472 CCCCGTTTGGATTAGCGTTTT 59.458 47.619 0.00 0.00 37.49 2.43
1826 5407 1.170442 CCCCGTTTGGATTAGCGTTT 58.830 50.000 0.00 0.00 37.49 3.60
1827 5408 1.310216 GCCCCGTTTGGATTAGCGTT 61.310 55.000 0.00 0.00 37.49 4.84
1828 5409 1.747745 GCCCCGTTTGGATTAGCGT 60.748 57.895 0.00 0.00 37.49 5.07
1829 5410 2.478033 GGCCCCGTTTGGATTAGCG 61.478 63.158 0.00 0.00 37.49 4.26
1830 5411 0.683179 AAGGCCCCGTTTGGATTAGC 60.683 55.000 0.00 0.00 37.49 3.09
1831 5412 1.102978 CAAGGCCCCGTTTGGATTAG 58.897 55.000 0.00 0.00 37.49 1.73
1832 5413 0.699399 TCAAGGCCCCGTTTGGATTA 59.301 50.000 0.00 0.00 37.49 1.75
1833 5414 0.041090 ATCAAGGCCCCGTTTGGATT 59.959 50.000 0.00 0.00 37.49 3.01
1834 5415 0.395724 GATCAAGGCCCCGTTTGGAT 60.396 55.000 0.00 0.00 37.49 3.41
1835 5416 1.001393 GATCAAGGCCCCGTTTGGA 60.001 57.895 0.00 0.00 37.49 3.53
1836 5417 1.000896 AGATCAAGGCCCCGTTTGG 60.001 57.895 0.00 0.00 0.00 3.28
1837 5418 0.609131 ACAGATCAAGGCCCCGTTTG 60.609 55.000 0.00 0.00 0.00 2.93
1838 5419 0.112412 AACAGATCAAGGCCCCGTTT 59.888 50.000 0.00 0.00 0.00 3.60
1839 5420 0.112412 AAACAGATCAAGGCCCCGTT 59.888 50.000 0.00 0.00 0.00 4.44
1840 5421 0.322546 GAAACAGATCAAGGCCCCGT 60.323 55.000 0.00 0.00 0.00 5.28
1841 5422 1.032114 GGAAACAGATCAAGGCCCCG 61.032 60.000 0.00 0.00 0.00 5.73
1842 5423 0.684479 GGGAAACAGATCAAGGCCCC 60.684 60.000 0.00 0.00 0.00 5.80
1843 5424 0.332972 AGGGAAACAGATCAAGGCCC 59.667 55.000 0.00 0.00 0.00 5.80
1844 5425 1.272147 ACAGGGAAACAGATCAAGGCC 60.272 52.381 0.00 0.00 0.00 5.19
1845 5426 2.087646 GACAGGGAAACAGATCAAGGC 58.912 52.381 0.00 0.00 0.00 4.35
1846 5427 2.289694 ACGACAGGGAAACAGATCAAGG 60.290 50.000 0.00 0.00 0.00 3.61
1875 5456 3.321682 TCAATTTGAGCTGGAAGTTTGGG 59.678 43.478 0.00 0.00 35.30 4.12
1940 5544 7.609760 ATGTTCGTTCATCTGTTTAGCATAA 57.390 32.000 0.00 0.00 0.00 1.90
2067 5733 2.584236 ACGCGGTACCTCATATTCTCT 58.416 47.619 12.47 0.00 0.00 3.10
2095 5761 3.243535 CGACATGAATCTAGCTACCAGCA 60.244 47.826 0.00 0.00 45.56 4.41
2171 5852 2.036475 TGCTGTCTGTTCTCACCTCTTC 59.964 50.000 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.