Multiple sequence alignment - TraesCS6B01G359100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G359100 chr6B 100.000 2800 0 0 1 2800 630530678 630527879 0.000000e+00 5171.0
1 TraesCS6B01G359100 chr6B 83.253 1242 144 39 1512 2706 630512557 630511333 0.000000e+00 1083.0
2 TraesCS6B01G359100 chr6B 90.249 482 41 3 1026 1501 630514669 630514188 2.370000e-175 625.0
3 TraesCS6B01G359100 chr6B 90.196 408 40 0 1097 1504 630465938 630465531 1.480000e-147 532.0
4 TraesCS6B01G359100 chr6B 92.350 366 25 2 1094 1456 630568737 630568372 4.130000e-143 518.0
5 TraesCS6B01G359100 chr6B 87.097 248 10 2 736 983 630520127 630519902 7.690000e-66 261.0
6 TraesCS6B01G359100 chr6B 88.835 206 14 2 736 940 630569214 630569017 7.750000e-61 244.0
7 TraesCS6B01G359100 chr6B 89.583 192 10 3 736 925 630532537 630532354 4.660000e-58 235.0
8 TraesCS6B01G359100 chr6B 98.701 77 0 1 2566 2641 630527989 630527913 4.860000e-28 135.0
9 TraesCS6B01G359100 chr6B 98.701 77 0 1 2690 2766 630528113 630528038 4.860000e-28 135.0
10 TraesCS6B01G359100 chr6B 94.444 54 3 0 2182 2235 712617648 712617595 1.790000e-12 84.2
11 TraesCS6B01G359100 chr6B 93.878 49 3 0 591 639 630521369 630521321 1.080000e-09 75.0
12 TraesCS6B01G359100 chr6B 97.619 42 1 0 2690 2731 630511492 630511451 3.870000e-09 73.1
13 TraesCS6B01G359100 chr6B 95.455 44 2 0 992 1035 630519872 630519829 1.390000e-08 71.3
14 TraesCS6B01G359100 chr6D 83.129 1221 157 22 1512 2706 418481662 418480465 0.000000e+00 1068.0
15 TraesCS6B01G359100 chr6D 90.226 798 39 11 737 1513 418524584 418523805 0.000000e+00 1005.0
16 TraesCS6B01G359100 chr6D 86.008 779 49 20 737 1484 418489326 418488577 0.000000e+00 780.0
17 TraesCS6B01G359100 chr6D 86.777 605 70 4 1686 2281 418523512 418522909 0.000000e+00 665.0
18 TraesCS6B01G359100 chr6D 93.587 421 23 3 1094 1510 418530979 418530559 2.370000e-175 625.0
19 TraesCS6B01G359100 chr6D 90.465 409 37 2 1097 1504 418313162 418312755 3.170000e-149 538.0
20 TraesCS6B01G359100 chr6D 94.182 275 15 1 1 275 418525188 418524915 4.310000e-113 418.0
21 TraesCS6B01G359100 chr6D 82.388 335 36 16 1512 1839 418530516 418530198 1.280000e-68 270.0
22 TraesCS6B01G359100 chr6D 92.697 178 11 2 1512 1687 418523771 418523594 3.580000e-64 255.0
23 TraesCS6B01G359100 chr6D 79.167 408 54 21 1510 1912 418460722 418460341 1.290000e-63 254.0
24 TraesCS6B01G359100 chr6D 91.538 130 11 0 741 870 418531413 418531284 2.220000e-41 180.0
25 TraesCS6B01G359100 chr6D 97.619 42 1 0 2690 2731 418480613 418480572 3.870000e-09 73.1
26 TraesCS6B01G359100 chr6A 86.172 781 95 7 1512 2281 560825060 560824282 0.000000e+00 832.0
27 TraesCS6B01G359100 chr6A 85.571 797 45 15 740 1513 560825843 560825094 0.000000e+00 771.0
28 TraesCS6B01G359100 chr6A 94.132 409 21 1 1094 1499 560829435 560829027 1.100000e-173 619.0
29 TraesCS6B01G359100 chr6A 91.250 400 35 0 1097 1496 560816806 560816407 1.900000e-151 545.0
30 TraesCS6B01G359100 chr6A 90.268 411 40 0 1094 1504 560753657 560753247 3.170000e-149 538.0
31 TraesCS6B01G359100 chr6A 83.578 408 53 14 1510 1909 560816351 560815950 1.230000e-98 370.0
32 TraesCS6B01G359100 chr6A 77.558 557 89 27 2081 2606 560828491 560827940 1.260000e-78 303.0
33 TraesCS6B01G359100 chr6A 95.977 174 5 2 291 462 222571414 222571241 5.900000e-72 281.0
34 TraesCS6B01G359100 chr6A 82.440 336 45 7 1512 1840 560828971 560828643 5.900000e-72 281.0
35 TraesCS6B01G359100 chr6A 94.054 185 8 3 285 467 257975756 257975939 7.640000e-71 278.0
36 TraesCS6B01G359100 chr6A 88.670 203 14 2 741 943 560829869 560829676 3.600000e-59 239.0
37 TraesCS6B01G359100 chr6A 97.959 49 1 0 591 639 560826171 560826123 4.970000e-13 86.1
38 TraesCS6B01G359100 chr6A 72.404 337 66 21 2289 2606 560815516 560815188 6.430000e-12 82.4
39 TraesCS6B01G359100 chr6A 92.683 41 2 1 2691 2730 560815228 560815188 1.080000e-04 58.4
40 TraesCS6B01G359100 chr2B 85.494 324 32 9 280 589 9033599 9033277 9.670000e-85 324.0
41 TraesCS6B01G359100 chr5A 96.491 171 6 0 292 462 555280766 555280936 1.640000e-72 283.0
42 TraesCS6B01G359100 chr5A 85.461 282 30 3 280 550 706668649 706668930 1.640000e-72 283.0
43 TraesCS6B01G359100 chr5A 74.372 199 33 12 2050 2235 656227495 656227302 5.000000e-08 69.4
44 TraesCS6B01G359100 chr7A 95.954 173 7 0 288 460 604387514 604387342 5.900000e-72 281.0
45 TraesCS6B01G359100 chr7A 95.294 85 4 0 636 720 612375692 612375608 4.860000e-28 135.0
46 TraesCS6B01G359100 chr1D 97.006 167 5 0 296 462 360358387 360358221 5.900000e-72 281.0
47 TraesCS6B01G359100 chr1D 95.882 170 6 1 291 459 178466475 178466306 9.880000e-70 274.0
48 TraesCS6B01G359100 chr1D 90.625 96 9 0 632 727 462985058 462985153 8.140000e-26 128.0
49 TraesCS6B01G359100 chr4D 95.376 173 7 1 288 459 69494134 69494306 9.880000e-70 274.0
50 TraesCS6B01G359100 chr4D 97.917 48 1 0 2187 2234 498075769 498075816 1.790000e-12 84.2
51 TraesCS6B01G359100 chr4D 97.826 46 1 0 2189 2234 254813157 254813112 2.310000e-11 80.5
52 TraesCS6B01G359100 chr1B 96.591 88 3 0 636 723 533368747 533368660 2.250000e-31 147.0
53 TraesCS6B01G359100 chr1B 93.333 90 6 0 635 724 133451752 133451841 1.750000e-27 134.0
54 TraesCS6B01G359100 chrUn 94.565 92 4 1 630 721 154694964 154694874 1.050000e-29 141.0
55 TraesCS6B01G359100 chr2D 93.684 95 5 1 626 720 612817355 612817262 1.050000e-29 141.0
56 TraesCS6B01G359100 chr3D 93.478 92 5 1 630 721 26880468 26880558 4.860000e-28 135.0
57 TraesCS6B01G359100 chr3D 93.478 92 5 1 630 721 156838662 156838752 4.860000e-28 135.0
58 TraesCS6B01G359100 chr3D 74.771 218 52 3 2017 2232 564661694 564661910 8.260000e-16 95.3
59 TraesCS6B01G359100 chr3D 76.966 178 32 6 2062 2234 509687746 509687573 2.970000e-15 93.5
60 TraesCS6B01G359100 chr3B 93.333 90 5 1 631 720 527240031 527239943 6.290000e-27 132.0
61 TraesCS6B01G359100 chr3B 96.970 33 1 0 552 584 477329577 477329545 3.900000e-04 56.5
62 TraesCS6B01G359100 chr4A 76.889 225 44 7 1547 1767 256611845 256612065 1.360000e-23 121.0
63 TraesCS6B01G359100 chr4A 75.373 134 26 5 2024 2156 449401620 449401493 1.080000e-04 58.4
64 TraesCS6B01G359100 chr2A 77.976 168 36 1 2069 2235 645310036 645309869 1.370000e-18 104.0
65 TraesCS6B01G359100 chr5D 97.368 38 1 0 552 589 383296411 383296374 6.470000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G359100 chr6B 630527879 630530678 2799 True 1813.666667 5171 99.134000 1 2800 3 chr6B.!!$R6 2799
1 TraesCS6B01G359100 chr6B 630511333 630514669 3336 True 593.700000 1083 90.373667 1026 2731 3 chr6B.!!$R4 1705
2 TraesCS6B01G359100 chr6B 630568372 630569214 842 True 381.000000 518 90.592500 736 1456 2 chr6B.!!$R7 720
3 TraesCS6B01G359100 chr6D 418488577 418489326 749 True 780.000000 780 86.008000 737 1484 1 chr6D.!!$R3 747
4 TraesCS6B01G359100 chr6D 418522909 418525188 2279 True 585.750000 1005 90.970500 1 2281 4 chr6D.!!$R5 2280
5 TraesCS6B01G359100 chr6D 418480465 418481662 1197 True 570.550000 1068 90.374000 1512 2731 2 chr6D.!!$R4 1219
6 TraesCS6B01G359100 chr6D 418530198 418531413 1215 True 358.333333 625 89.171000 741 1839 3 chr6D.!!$R6 1098
7 TraesCS6B01G359100 chr6A 560824282 560829869 5587 True 447.300000 832 87.500286 591 2606 7 chr6A.!!$R4 2015
8 TraesCS6B01G359100 chr6A 560815188 560816806 1618 True 263.950000 545 84.978750 1097 2730 4 chr6A.!!$R3 1633


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 464 1.192428 GGAACGGAGGGTGTAGATGT 58.808 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1938 8070 0.03831 AAGGGGGCTGAGTTTGTAGC 59.962 55.0 0.0 0.0 39.17 3.58 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.787135 TGATGCCACCTGAACCATATAA 57.213 40.909 0.00 0.00 0.00 0.98
261 262 8.752766 AACTTTCATCTTAACATGCAATTCAG 57.247 30.769 0.00 0.00 0.00 3.02
275 276 5.260027 GCAATTCAGTGCAATCAGAAAAC 57.740 39.130 0.00 0.00 44.29 2.43
276 277 4.143473 GCAATTCAGTGCAATCAGAAAACG 60.143 41.667 0.00 0.00 44.29 3.60
277 278 5.214417 CAATTCAGTGCAATCAGAAAACGA 58.786 37.500 0.00 0.00 0.00 3.85
278 279 4.472691 TTCAGTGCAATCAGAAAACGAG 57.527 40.909 0.00 0.00 0.00 4.18
279 280 3.466836 TCAGTGCAATCAGAAAACGAGT 58.533 40.909 0.00 0.00 0.00 4.18
280 281 3.876914 TCAGTGCAATCAGAAAACGAGTT 59.123 39.130 0.00 0.00 0.00 3.01
281 282 3.970610 CAGTGCAATCAGAAAACGAGTTG 59.029 43.478 0.00 0.00 0.00 3.16
282 283 3.627577 AGTGCAATCAGAAAACGAGTTGT 59.372 39.130 0.00 0.00 0.00 3.32
283 284 3.968724 GTGCAATCAGAAAACGAGTTGTC 59.031 43.478 0.00 0.00 0.00 3.18
284 285 3.876914 TGCAATCAGAAAACGAGTTGTCT 59.123 39.130 2.96 2.96 37.63 3.41
285 286 5.050363 GTGCAATCAGAAAACGAGTTGTCTA 60.050 40.000 8.22 0.00 35.05 2.59
286 287 5.525745 TGCAATCAGAAAACGAGTTGTCTAA 59.474 36.000 8.22 0.00 35.05 2.10
287 288 6.204688 TGCAATCAGAAAACGAGTTGTCTAAT 59.795 34.615 8.22 0.00 35.05 1.73
288 289 7.078228 GCAATCAGAAAACGAGTTGTCTAATT 58.922 34.615 8.22 3.87 35.05 1.40
289 290 7.269297 GCAATCAGAAAACGAGTTGTCTAATTC 59.731 37.037 8.22 0.00 35.05 2.17
290 291 7.962964 ATCAGAAAACGAGTTGTCTAATTCA 57.037 32.000 8.22 0.00 35.05 2.57
291 292 7.173863 TCAGAAAACGAGTTGTCTAATTCAC 57.826 36.000 8.22 0.00 35.05 3.18
292 293 6.759356 TCAGAAAACGAGTTGTCTAATTCACA 59.241 34.615 8.22 0.00 35.05 3.58
293 294 7.441157 TCAGAAAACGAGTTGTCTAATTCACAT 59.559 33.333 8.22 0.00 35.05 3.21
294 295 7.742089 CAGAAAACGAGTTGTCTAATTCACATC 59.258 37.037 8.22 0.00 35.05 3.06
295 296 7.657761 AGAAAACGAGTTGTCTAATTCACATCT 59.342 33.333 6.87 2.19 35.48 2.90
296 297 8.827177 AAAACGAGTTGTCTAATTCACATCTA 57.173 30.769 0.00 0.00 0.00 1.98
297 298 7.813852 AACGAGTTGTCTAATTCACATCTAC 57.186 36.000 0.00 0.00 0.00 2.59
298 299 7.159322 ACGAGTTGTCTAATTCACATCTACT 57.841 36.000 0.00 0.00 0.00 2.57
299 300 7.251994 ACGAGTTGTCTAATTCACATCTACTC 58.748 38.462 0.00 9.07 30.59 2.59
300 301 6.693545 CGAGTTGTCTAATTCACATCTACTCC 59.306 42.308 11.58 0.00 30.31 3.85
301 302 7.415765 CGAGTTGTCTAATTCACATCTACTCCT 60.416 40.741 11.58 0.00 30.31 3.69
302 303 8.140112 AGTTGTCTAATTCACATCTACTCCTT 57.860 34.615 1.03 0.00 0.00 3.36
303 304 8.254508 AGTTGTCTAATTCACATCTACTCCTTC 58.745 37.037 1.03 0.00 0.00 3.46
304 305 7.113658 TGTCTAATTCACATCTACTCCTTCC 57.886 40.000 0.00 0.00 0.00 3.46
305 306 6.183360 TGTCTAATTCACATCTACTCCTTCCG 60.183 42.308 0.00 0.00 0.00 4.30
306 307 5.892119 TCTAATTCACATCTACTCCTTCCGT 59.108 40.000 0.00 0.00 0.00 4.69
307 308 5.422214 AATTCACATCTACTCCTTCCGTT 57.578 39.130 0.00 0.00 0.00 4.44
308 309 4.451629 TTCACATCTACTCCTTCCGTTC 57.548 45.455 0.00 0.00 0.00 3.95
309 310 2.758979 TCACATCTACTCCTTCCGTTCC 59.241 50.000 0.00 0.00 0.00 3.62
310 311 2.761208 CACATCTACTCCTTCCGTTCCT 59.239 50.000 0.00 0.00 0.00 3.36
311 312 3.952323 CACATCTACTCCTTCCGTTCCTA 59.048 47.826 0.00 0.00 0.00 2.94
312 313 4.401519 CACATCTACTCCTTCCGTTCCTAA 59.598 45.833 0.00 0.00 0.00 2.69
313 314 5.021458 ACATCTACTCCTTCCGTTCCTAAA 58.979 41.667 0.00 0.00 0.00 1.85
314 315 5.661759 ACATCTACTCCTTCCGTTCCTAAAT 59.338 40.000 0.00 0.00 0.00 1.40
315 316 6.837568 ACATCTACTCCTTCCGTTCCTAAATA 59.162 38.462 0.00 0.00 0.00 1.40
316 317 7.509659 ACATCTACTCCTTCCGTTCCTAAATAT 59.490 37.037 0.00 0.00 0.00 1.28
317 318 7.909485 TCTACTCCTTCCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
318 319 8.315220 TCTACTCCTTCCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
319 320 8.202137 TCTACTCCTTCCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
320 321 6.718294 ACTCCTTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
321 322 6.822170 ACTCCTTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
322 323 6.954232 TCCTTCCGTTCCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
323 324 7.399634 TCCTTCCGTTCCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
324 325 7.886446 TCCTTCCGTTCCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
325 326 8.182227 CCTTCCGTTCCTAAATATTTGTCTTTC 58.818 37.037 11.05 0.00 0.00 2.62
326 327 8.857694 TTCCGTTCCTAAATATTTGTCTTTCT 57.142 30.769 11.05 0.00 0.00 2.52
327 328 9.947433 TTCCGTTCCTAAATATTTGTCTTTCTA 57.053 29.630 11.05 0.00 0.00 2.10
328 329 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
329 330 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
342 343 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
343 344 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
344 345 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
345 346 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
346 347 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
347 348 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
348 349 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
349 350 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
350 351 8.082852 TCTAGAGATTTCAACAAGTGACTACAC 58.917 37.037 0.00 0.00 46.24 2.90
359 360 3.580904 GTGACTACACACGGAGCAA 57.419 52.632 0.00 0.00 45.32 3.91
360 361 1.860676 GTGACTACACACGGAGCAAA 58.139 50.000 0.00 0.00 45.32 3.68
361 362 2.206750 GTGACTACACACGGAGCAAAA 58.793 47.619 0.00 0.00 45.32 2.44
362 363 2.806244 GTGACTACACACGGAGCAAAAT 59.194 45.455 0.00 0.00 45.32 1.82
363 364 2.805671 TGACTACACACGGAGCAAAATG 59.194 45.455 0.00 0.00 0.00 2.32
364 365 3.064207 GACTACACACGGAGCAAAATGA 58.936 45.455 0.00 0.00 0.00 2.57
365 366 3.067106 ACTACACACGGAGCAAAATGAG 58.933 45.455 0.00 0.00 0.00 2.90
366 367 1.967319 ACACACGGAGCAAAATGAGT 58.033 45.000 0.00 0.00 0.00 3.41
367 368 1.603802 ACACACGGAGCAAAATGAGTG 59.396 47.619 0.00 0.00 35.89 3.51
368 369 1.872952 CACACGGAGCAAAATGAGTGA 59.127 47.619 0.19 0.00 34.16 3.41
369 370 2.290367 CACACGGAGCAAAATGAGTGAA 59.710 45.455 0.19 0.00 34.16 3.18
370 371 3.058016 CACACGGAGCAAAATGAGTGAAT 60.058 43.478 0.19 0.00 34.16 2.57
371 372 3.189287 ACACGGAGCAAAATGAGTGAATC 59.811 43.478 0.19 0.00 34.16 2.52
372 373 3.438087 CACGGAGCAAAATGAGTGAATCT 59.562 43.478 0.00 0.00 0.00 2.40
373 374 4.631377 CACGGAGCAAAATGAGTGAATCTA 59.369 41.667 0.00 0.00 0.00 1.98
374 375 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
375 376 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
376 377 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
409 410 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
411 412 8.866970 TGTCTATATACATCCGTATGTGGTAA 57.133 34.615 3.56 0.00 45.99 2.85
412 413 8.733458 TGTCTATATACATCCGTATGTGGTAAC 58.267 37.037 3.56 0.00 45.99 2.50
413 414 8.186821 GTCTATATACATCCGTATGTGGTAACC 58.813 40.741 3.56 0.00 45.99 2.85
414 415 6.921486 ATATACATCCGTATGTGGTAACCA 57.079 37.500 3.56 0.00 45.99 3.67
415 416 5.818678 ATACATCCGTATGTGGTAACCAT 57.181 39.130 3.56 0.00 45.99 3.55
416 417 4.497291 ACATCCGTATGTGGTAACCATT 57.503 40.909 0.00 0.00 44.79 3.16
417 418 4.850680 ACATCCGTATGTGGTAACCATTT 58.149 39.130 0.00 0.00 44.79 2.32
418 419 4.638421 ACATCCGTATGTGGTAACCATTTG 59.362 41.667 0.00 0.00 44.79 2.32
419 420 4.554960 TCCGTATGTGGTAACCATTTGA 57.445 40.909 0.00 0.00 35.28 2.69
420 421 5.105567 TCCGTATGTGGTAACCATTTGAT 57.894 39.130 0.00 0.00 35.28 2.57
421 422 6.236558 TCCGTATGTGGTAACCATTTGATA 57.763 37.500 0.00 0.00 35.28 2.15
422 423 6.833041 TCCGTATGTGGTAACCATTTGATAT 58.167 36.000 0.00 0.00 35.28 1.63
423 424 6.932400 TCCGTATGTGGTAACCATTTGATATC 59.068 38.462 0.00 0.00 35.28 1.63
424 425 6.934645 CCGTATGTGGTAACCATTTGATATCT 59.065 38.462 3.98 0.00 35.28 1.98
425 426 7.117812 CCGTATGTGGTAACCATTTGATATCTC 59.882 40.741 3.98 0.00 35.28 2.75
426 427 7.872993 CGTATGTGGTAACCATTTGATATCTCT 59.127 37.037 3.98 0.00 35.28 3.10
430 431 9.967451 TGTGGTAACCATTTGATATCTCTAAAA 57.033 29.630 3.98 0.00 35.28 1.52
453 454 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
454 455 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
455 456 5.191124 AGACAAATATTTAGGAACGGAGGGT 59.809 40.000 0.00 0.00 0.00 4.34
456 457 5.190677 ACAAATATTTAGGAACGGAGGGTG 58.809 41.667 0.00 0.00 0.00 4.61
457 458 5.190677 CAAATATTTAGGAACGGAGGGTGT 58.809 41.667 0.00 0.00 0.00 4.16
458 459 6.070078 ACAAATATTTAGGAACGGAGGGTGTA 60.070 38.462 0.00 0.00 0.00 2.90
459 460 5.803237 ATATTTAGGAACGGAGGGTGTAG 57.197 43.478 0.00 0.00 0.00 2.74
460 461 2.905415 TTAGGAACGGAGGGTGTAGA 57.095 50.000 0.00 0.00 0.00 2.59
461 462 3.393426 TTAGGAACGGAGGGTGTAGAT 57.607 47.619 0.00 0.00 0.00 1.98
462 463 1.486211 AGGAACGGAGGGTGTAGATG 58.514 55.000 0.00 0.00 0.00 2.90
463 464 1.192428 GGAACGGAGGGTGTAGATGT 58.808 55.000 0.00 0.00 0.00 3.06
464 465 1.553704 GGAACGGAGGGTGTAGATGTT 59.446 52.381 0.00 0.00 0.00 2.71
465 466 2.027469 GGAACGGAGGGTGTAGATGTTT 60.027 50.000 0.00 0.00 0.00 2.83
466 467 3.558533 GGAACGGAGGGTGTAGATGTTTT 60.559 47.826 0.00 0.00 0.00 2.43
467 468 3.782656 ACGGAGGGTGTAGATGTTTTT 57.217 42.857 0.00 0.00 0.00 1.94
489 490 7.754851 TTTTAAAGGGGTCACATCTAAGTTC 57.245 36.000 0.00 0.00 0.00 3.01
490 491 4.302559 AAAGGGGTCACATCTAAGTTCC 57.697 45.455 0.00 0.00 0.00 3.62
491 492 2.197465 AGGGGTCACATCTAAGTTCCC 58.803 52.381 0.00 0.00 34.33 3.97
492 493 1.913419 GGGGTCACATCTAAGTTCCCA 59.087 52.381 0.00 0.00 35.82 4.37
493 494 2.355818 GGGGTCACATCTAAGTTCCCAC 60.356 54.545 0.00 0.00 35.82 4.61
494 495 2.304761 GGGTCACATCTAAGTTCCCACA 59.695 50.000 0.00 0.00 34.86 4.17
495 496 3.244770 GGGTCACATCTAAGTTCCCACAA 60.245 47.826 0.00 0.00 34.86 3.33
496 497 3.751698 GGTCACATCTAAGTTCCCACAAC 59.248 47.826 0.00 0.00 0.00 3.32
497 498 4.505039 GGTCACATCTAAGTTCCCACAACT 60.505 45.833 0.00 0.00 0.00 3.16
498 499 5.279809 GGTCACATCTAAGTTCCCACAACTA 60.280 44.000 0.00 0.00 0.00 2.24
499 500 6.407202 GTCACATCTAAGTTCCCACAACTAT 58.593 40.000 0.00 0.00 0.00 2.12
500 501 7.364408 GGTCACATCTAAGTTCCCACAACTATA 60.364 40.741 0.00 0.00 0.00 1.31
501 502 8.204836 GTCACATCTAAGTTCCCACAACTATAT 58.795 37.037 0.00 0.00 0.00 0.86
502 503 9.429109 TCACATCTAAGTTCCCACAACTATATA 57.571 33.333 0.00 0.00 0.00 0.86
506 507 9.726438 ATCTAAGTTCCCACAACTATATAATGC 57.274 33.333 0.00 0.00 0.00 3.56
507 508 8.710239 TCTAAGTTCCCACAACTATATAATGCA 58.290 33.333 0.00 0.00 0.00 3.96
508 509 7.807977 AAGTTCCCACAACTATATAATGCAG 57.192 36.000 0.00 0.00 0.00 4.41
509 510 5.765182 AGTTCCCACAACTATATAATGCAGC 59.235 40.000 0.00 0.00 0.00 5.25
510 511 5.303259 TCCCACAACTATATAATGCAGCA 57.697 39.130 0.00 0.00 0.00 4.41
511 512 5.689835 TCCCACAACTATATAATGCAGCAA 58.310 37.500 0.00 0.00 0.00 3.91
512 513 6.125719 TCCCACAACTATATAATGCAGCAAA 58.874 36.000 0.00 0.00 0.00 3.68
513 514 6.605194 TCCCACAACTATATAATGCAGCAAAA 59.395 34.615 0.00 0.00 0.00 2.44
514 515 7.123397 TCCCACAACTATATAATGCAGCAAAAA 59.877 33.333 0.00 0.00 0.00 1.94
586 587 6.605471 ACATGTAGATGTGTCCTAAACAGA 57.395 37.500 4.42 0.00 41.52 3.41
587 588 6.398918 ACATGTAGATGTGTCCTAAACAGAC 58.601 40.000 4.42 0.00 41.52 3.51
588 589 5.401531 TGTAGATGTGTCCTAAACAGACC 57.598 43.478 0.00 0.00 38.97 3.85
589 590 3.983044 AGATGTGTCCTAAACAGACCC 57.017 47.619 0.00 0.00 38.97 4.46
590 591 3.248024 AGATGTGTCCTAAACAGACCCA 58.752 45.455 0.00 0.00 38.97 4.51
591 592 3.846588 AGATGTGTCCTAAACAGACCCAT 59.153 43.478 0.00 0.00 38.97 4.00
592 593 3.695830 TGTGTCCTAAACAGACCCATC 57.304 47.619 0.00 0.00 38.97 3.51
593 594 2.976185 TGTGTCCTAAACAGACCCATCA 59.024 45.455 0.00 0.00 38.97 3.07
594 595 3.007940 TGTGTCCTAAACAGACCCATCAG 59.992 47.826 0.00 0.00 38.97 2.90
595 596 3.260884 GTGTCCTAAACAGACCCATCAGA 59.739 47.826 0.00 0.00 38.97 3.27
596 597 3.907474 TGTCCTAAACAGACCCATCAGAA 59.093 43.478 0.00 0.00 33.09 3.02
597 598 4.349636 TGTCCTAAACAGACCCATCAGAAA 59.650 41.667 0.00 0.00 33.09 2.52
598 599 5.163141 TGTCCTAAACAGACCCATCAGAAAA 60.163 40.000 0.00 0.00 33.09 2.29
607 608 9.699410 AACAGACCCATCAGAAAATATATTTCA 57.301 29.630 11.08 0.00 0.00 2.69
642 643 3.624777 CATTGCTTCAATGGTACTCCCT 58.375 45.455 10.74 0.00 45.03 4.20
643 644 3.350219 TTGCTTCAATGGTACTCCCTC 57.650 47.619 0.00 0.00 0.00 4.30
644 645 1.559682 TGCTTCAATGGTACTCCCTCC 59.440 52.381 0.00 0.00 0.00 4.30
645 646 1.473434 GCTTCAATGGTACTCCCTCCG 60.473 57.143 0.00 0.00 0.00 4.63
646 647 1.831736 CTTCAATGGTACTCCCTCCGT 59.168 52.381 0.00 0.00 0.00 4.69
647 648 2.832643 TCAATGGTACTCCCTCCGTA 57.167 50.000 0.00 0.00 0.00 4.02
648 649 3.104519 TCAATGGTACTCCCTCCGTAA 57.895 47.619 0.00 0.00 0.00 3.18
649 650 3.443052 TCAATGGTACTCCCTCCGTAAA 58.557 45.455 0.00 0.00 0.00 2.01
650 651 3.449737 TCAATGGTACTCCCTCCGTAAAG 59.550 47.826 0.00 0.00 0.00 1.85
651 652 2.905415 TGGTACTCCCTCCGTAAAGA 57.095 50.000 0.00 0.00 0.00 2.52
652 653 3.173953 TGGTACTCCCTCCGTAAAGAA 57.826 47.619 0.00 0.00 0.00 2.52
653 654 3.509442 TGGTACTCCCTCCGTAAAGAAA 58.491 45.455 0.00 0.00 0.00 2.52
654 655 4.098894 TGGTACTCCCTCCGTAAAGAAAT 58.901 43.478 0.00 0.00 0.00 2.17
655 656 5.271598 TGGTACTCCCTCCGTAAAGAAATA 58.728 41.667 0.00 0.00 0.00 1.40
656 657 5.901276 TGGTACTCCCTCCGTAAAGAAATAT 59.099 40.000 0.00 0.00 0.00 1.28
657 658 7.068702 TGGTACTCCCTCCGTAAAGAAATATA 58.931 38.462 0.00 0.00 0.00 0.86
658 659 7.564660 TGGTACTCCCTCCGTAAAGAAATATAA 59.435 37.037 0.00 0.00 0.00 0.98
659 660 8.087136 GGTACTCCCTCCGTAAAGAAATATAAG 58.913 40.741 0.00 0.00 0.00 1.73
660 661 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
661 662 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
662 663 6.756221 TCCCTCCGTAAAGAAATATAAGAGC 58.244 40.000 0.00 0.00 0.00 4.09
663 664 5.634020 CCCTCCGTAAAGAAATATAAGAGCG 59.366 44.000 0.00 0.00 0.00 5.03
664 665 6.214399 CCTCCGTAAAGAAATATAAGAGCGT 58.786 40.000 0.00 0.00 0.00 5.07
665 666 6.700520 CCTCCGTAAAGAAATATAAGAGCGTT 59.299 38.462 0.00 0.00 0.00 4.84
666 667 7.864379 CCTCCGTAAAGAAATATAAGAGCGTTA 59.136 37.037 0.00 0.00 0.00 3.18
667 668 9.241317 CTCCGTAAAGAAATATAAGAGCGTTAA 57.759 33.333 0.00 0.00 0.00 2.01
668 669 9.241317 TCCGTAAAGAAATATAAGAGCGTTAAG 57.759 33.333 0.00 0.00 0.00 1.85
669 670 8.485591 CCGTAAAGAAATATAAGAGCGTTAAGG 58.514 37.037 0.00 0.00 0.00 2.69
670 671 9.028185 CGTAAAGAAATATAAGAGCGTTAAGGT 57.972 33.333 0.00 0.00 0.00 3.50
683 684 7.592439 GAGCGTTAAGGTCACTATTTTAGTT 57.408 36.000 0.00 0.00 46.08 2.24
684 685 8.693542 GAGCGTTAAGGTCACTATTTTAGTTA 57.306 34.615 0.00 0.00 46.08 2.24
685 686 9.310716 GAGCGTTAAGGTCACTATTTTAGTTAT 57.689 33.333 0.00 0.00 46.08 1.89
686 687 9.310716 AGCGTTAAGGTCACTATTTTAGTTATC 57.689 33.333 0.00 0.00 36.76 1.75
687 688 9.310716 GCGTTAAGGTCACTATTTTAGTTATCT 57.689 33.333 0.00 0.00 36.76 1.98
715 716 9.905713 AATGCTCTTATATTTGTTTACAGAGGA 57.094 29.630 0.00 0.00 0.00 3.71
716 717 9.905713 ATGCTCTTATATTTGTTTACAGAGGAA 57.094 29.630 0.00 0.00 0.00 3.36
717 718 9.383519 TGCTCTTATATTTGTTTACAGAGGAAG 57.616 33.333 0.00 0.00 0.00 3.46
718 719 9.384764 GCTCTTATATTTGTTTACAGAGGAAGT 57.615 33.333 0.00 0.00 0.00 3.01
735 736 9.853555 CAGAGGAAGTATTATATCTACAAGCTG 57.146 37.037 0.00 0.00 0.00 4.24
1021 1364 3.619483 CCTATAAAATCAACCGACGCACA 59.381 43.478 0.00 0.00 0.00 4.57
1448 5851 1.063951 GTGACGCGGAGACTACAACG 61.064 60.000 12.47 0.00 0.00 4.10
1451 5854 1.513586 CGCGGAGACTACAACGGAC 60.514 63.158 0.00 0.00 0.00 4.79
1460 5867 3.755378 AGACTACAACGGACGTTCATAGT 59.245 43.478 21.55 21.55 38.61 2.12
1504 5911 4.037208 GTGCAATTAGGCAGAACATAGCAT 59.963 41.667 0.00 0.00 45.96 3.79
1538 7571 6.931838 TCCTTCAAGACGTTCATAGTTATGT 58.068 36.000 0.00 0.00 35.26 2.29
1571 7605 7.581213 TGTTTAGAGCTCCTTTGATTCAAAA 57.419 32.000 10.93 0.00 32.75 2.44
1658 7695 5.716094 TCACATGATTGCAATTCTTTGGAG 58.284 37.500 14.33 6.76 34.44 3.86
1672 7709 8.945057 CAATTCTTTGGAGTTTTTCCTTTGAAA 58.055 29.630 0.00 0.00 46.92 2.69
1673 7710 9.685276 AATTCTTTGGAGTTTTTCCTTTGAAAT 57.315 25.926 0.00 0.00 46.92 2.17
1674 7711 8.716646 TTCTTTGGAGTTTTTCCTTTGAAATC 57.283 30.769 0.00 0.00 46.92 2.17
1675 7712 7.272244 TCTTTGGAGTTTTTCCTTTGAAATCC 58.728 34.615 0.00 0.00 46.92 3.01
1676 7713 6.552445 TTGGAGTTTTTCCTTTGAAATCCA 57.448 33.333 0.90 0.90 46.92 3.41
1742 7866 8.788813 CCGTTTCTTAAGAATTTCATCATTTCG 58.211 33.333 18.37 3.15 33.54 3.46
1749 7873 6.949352 AGAATTTCATCATTTCGCCTATGT 57.051 33.333 0.00 0.00 0.00 2.29
1885 8014 8.204836 TGAATCAAAGAGAGCCTTAACTATACC 58.795 37.037 0.00 0.00 34.00 2.73
1894 8023 7.275920 AGAGCCTTAACTATACCATTGTTCAG 58.724 38.462 0.00 0.00 31.09 3.02
1917 8046 4.028131 TCATAACTCCCGAGGTACACATT 58.972 43.478 0.00 0.00 32.71 2.71
1930 8062 8.333186 CCGAGGTACACATTTAGTAATTTAAGC 58.667 37.037 0.00 0.00 0.00 3.09
1938 8070 8.054236 CACATTTAGTAATTTAAGCGGACGTAG 58.946 37.037 0.00 0.00 0.00 3.51
1947 8079 0.886563 AGCGGACGTAGCTACAAACT 59.113 50.000 23.21 9.85 44.05 2.66
1951 8083 2.260481 GGACGTAGCTACAAACTCAGC 58.740 52.381 23.21 3.31 38.09 4.26
1978 8110 2.904866 GCTTCAACGGTGCACCCA 60.905 61.111 29.95 8.84 0.00 4.51
1981 8113 1.865788 CTTCAACGGTGCACCCATGG 61.866 60.000 29.95 18.03 0.00 3.66
1990 8122 1.754234 GCACCCATGGATTCGCCTT 60.754 57.895 15.22 0.00 37.63 4.35
1991 8123 2.008268 GCACCCATGGATTCGCCTTG 62.008 60.000 15.22 0.00 40.57 3.61
1993 8125 1.753848 CCCATGGATTCGCCTTGCA 60.754 57.895 15.22 0.00 39.78 4.08
2040 8172 3.735725 GGGAATCCCGGTTCCTCA 58.264 61.111 20.07 0.00 45.62 3.86
2046 8181 3.787001 CCCGGTTCCTCAGCTCCC 61.787 72.222 0.00 0.00 0.00 4.30
2050 8185 2.058595 GGTTCCTCAGCTCCCGCTA 61.059 63.158 0.00 0.00 46.99 4.26
2067 8202 2.762327 CGCTAGTAGTTTGGGTTAGGGA 59.238 50.000 0.00 0.00 0.00 4.20
2123 8258 1.674221 GGCAGTGCTTCATCTTCGAGT 60.674 52.381 16.11 0.00 0.00 4.18
2140 8275 2.231478 CGAGTTGGTCTTTCAGGCTCTA 59.769 50.000 0.00 0.00 0.00 2.43
2150 8285 1.309950 TCAGGCTCTAATCGTCCTCG 58.690 55.000 0.00 0.00 38.55 4.63
2167 8302 2.482664 CCTCGACTTCACCATCAGGATG 60.483 54.545 2.24 2.24 38.69 3.51
2215 8363 2.363795 TCGTCTCCTTGGGGCGAT 60.364 61.111 2.82 0.00 0.00 4.58
2235 8383 1.542915 TGAGGTTAGGGTTTCTCGTCG 59.457 52.381 0.00 0.00 0.00 5.12
2281 8429 7.023197 TGATGTCAGATGCTACAAATTGATG 57.977 36.000 0.00 0.00 0.00 3.07
2286 8559 5.587443 TCAGATGCTACAAATTGATGGTGAG 59.413 40.000 0.00 0.00 0.00 3.51
2314 8587 0.692419 CTCTGGGGTGCCAGTCCTAT 60.692 60.000 0.00 0.00 38.77 2.57
2338 8612 0.250424 CACATGCACACAGACTCCCA 60.250 55.000 0.00 0.00 0.00 4.37
2346 8620 0.249238 CACAGACTCCCAGCTATCGC 60.249 60.000 0.00 0.00 0.00 4.58
2362 8636 2.671619 GCCTACAAGGTTGCGCCA 60.672 61.111 4.18 0.00 37.80 5.69
2374 8648 0.683179 TTGCGCCAGCTCTAGTAGGA 60.683 55.000 4.18 0.00 45.42 2.94
2385 8670 3.219281 CTCTAGTAGGAGAGAGGCAACC 58.781 54.545 0.00 0.00 45.03 3.77
2386 8671 1.950909 CTAGTAGGAGAGAGGCAACCG 59.049 57.143 0.00 0.00 37.17 4.44
2387 8672 0.684805 AGTAGGAGAGAGGCAACCGG 60.685 60.000 0.00 0.00 37.17 5.28
2388 8673 2.058595 TAGGAGAGAGGCAACCGGC 61.059 63.158 0.00 0.00 43.74 6.13
2427 8712 2.094906 TGTCGAAGGTAGTGGTCATTCG 60.095 50.000 6.42 6.42 45.82 3.34
2432 8718 0.899720 GGTAGTGGTCATTCGGTGGA 59.100 55.000 0.00 0.00 0.00 4.02
2453 8739 0.551396 TAGGGAGCAGACCTCGATGA 59.449 55.000 0.00 0.00 41.71 2.92
2461 8747 3.007398 AGCAGACCTCGATGAAGTTTCTT 59.993 43.478 0.00 0.00 0.00 2.52
2466 8752 7.361286 GCAGACCTCGATGAAGTTTCTTTTATT 60.361 37.037 0.00 0.00 0.00 1.40
2468 8754 8.507249 AGACCTCGATGAAGTTTCTTTTATTTG 58.493 33.333 0.00 0.00 0.00 2.32
2482 8768 5.129485 TCTTTTATTTGTTTGGGTGCCTTGA 59.871 36.000 0.00 0.00 0.00 3.02
2483 8769 4.599047 TTATTTGTTTGGGTGCCTTGAG 57.401 40.909 0.00 0.00 0.00 3.02
2484 8770 1.859302 TTTGTTTGGGTGCCTTGAGT 58.141 45.000 0.00 0.00 0.00 3.41
2490 8776 3.806949 TTGGGTGCCTTGAGTTTCTAT 57.193 42.857 0.00 0.00 0.00 1.98
2491 8777 4.919774 TTGGGTGCCTTGAGTTTCTATA 57.080 40.909 0.00 0.00 0.00 1.31
2492 8778 4.216411 TGGGTGCCTTGAGTTTCTATAC 57.784 45.455 0.00 0.00 0.00 1.47
2494 8788 4.192317 GGGTGCCTTGAGTTTCTATACTG 58.808 47.826 0.00 0.00 0.00 2.74
2497 8791 6.116126 GGTGCCTTGAGTTTCTATACTGATT 58.884 40.000 0.00 0.00 0.00 2.57
2509 8803 8.946085 GTTTCTATACTGATTGATTTGTGTCCA 58.054 33.333 0.00 0.00 0.00 4.02
2512 8806 9.330063 TCTATACTGATTGATTTGTGTCCATTC 57.670 33.333 0.00 0.00 0.00 2.67
2521 8815 2.791383 TGTGTCCATTCCGCAAAAAG 57.209 45.000 0.00 0.00 0.00 2.27
2527 8821 4.580995 TGTCCATTCCGCAAAAAGTTAGAA 59.419 37.500 0.00 0.00 0.00 2.10
2530 8824 4.261825 CCATTCCGCAAAAAGTTAGAACCA 60.262 41.667 0.00 0.00 0.00 3.67
2613 8932 9.567776 TTAAATGTTCTCTACTTGTCCAAATCA 57.432 29.630 0.00 0.00 0.00 2.57
2615 8934 7.856145 ATGTTCTCTACTTGTCCAAATCATC 57.144 36.000 0.00 0.00 0.00 2.92
2670 8989 9.489084 CATTAATTTGGCAATTCATGATGATCT 57.511 29.630 0.00 0.00 36.61 2.75
2671 8990 9.706691 ATTAATTTGGCAATTCATGATGATCTC 57.293 29.630 0.00 0.00 34.29 2.75
2678 8997 5.705905 GCAATTCATGATGATCTCTGATCCA 59.294 40.000 0.00 0.00 0.00 3.41
2682 9001 4.771054 TCATGATGATCTCTGATCCACGAT 59.229 41.667 0.00 0.00 0.00 3.73
2689 9008 6.218746 TGATCTCTGATCCACGATACATTTG 58.781 40.000 5.27 0.00 0.00 2.32
2690 9009 4.948847 TCTCTGATCCACGATACATTTGG 58.051 43.478 0.00 0.00 0.00 3.28
2697 9016 7.051000 TGATCCACGATACATTTGGTATTGAA 58.949 34.615 8.34 0.00 43.80 2.69
2698 9017 6.918892 TCCACGATACATTTGGTATTGAAG 57.081 37.500 8.34 2.03 43.80 3.02
2701 9020 7.065324 TCCACGATACATTTGGTATTGAAGAAC 59.935 37.037 8.34 0.00 43.80 3.01
2702 9021 7.148323 CCACGATACATTTGGTATTGAAGAACA 60.148 37.037 8.34 0.00 43.80 3.18
2704 9023 8.956426 ACGATACATTTGGTATTGAAGAACATT 58.044 29.630 8.34 0.00 43.80 2.71
2737 9056 9.567776 TTAAATGTTCTCTACTTGTCCAAATCA 57.432 29.630 0.00 0.00 0.00 2.57
2738 9057 8.641498 AAATGTTCTCTACTTGTCCAAATCAT 57.359 30.769 0.00 0.00 0.00 2.45
2739 9058 7.856145 ATGTTCTCTACTTGTCCAAATCATC 57.144 36.000 0.00 0.00 0.00 2.92
2740 9059 7.009179 TGTTCTCTACTTGTCCAAATCATCT 57.991 36.000 0.00 0.00 0.00 2.90
2741 9060 6.875726 TGTTCTCTACTTGTCCAAATCATCTG 59.124 38.462 0.00 0.00 0.00 2.90
2742 9061 5.423015 TCTCTACTTGTCCAAATCATCTGC 58.577 41.667 0.00 0.00 0.00 4.26
2743 9062 5.046376 TCTCTACTTGTCCAAATCATCTGCA 60.046 40.000 0.00 0.00 0.00 4.41
2744 9063 5.748402 TCTACTTGTCCAAATCATCTGCAT 58.252 37.500 0.00 0.00 0.00 3.96
2745 9064 4.713824 ACTTGTCCAAATCATCTGCATG 57.286 40.909 0.00 0.00 0.00 4.06
2746 9065 4.084287 ACTTGTCCAAATCATCTGCATGT 58.916 39.130 0.00 0.00 0.00 3.21
2747 9066 4.157289 ACTTGTCCAAATCATCTGCATGTC 59.843 41.667 0.00 0.00 0.00 3.06
2748 9067 3.688235 TGTCCAAATCATCTGCATGTCA 58.312 40.909 0.00 0.00 0.00 3.58
2749 9068 4.274978 TGTCCAAATCATCTGCATGTCAT 58.725 39.130 0.00 0.00 0.00 3.06
2750 9069 4.097286 TGTCCAAATCATCTGCATGTCATG 59.903 41.667 8.56 8.56 0.00 3.07
2751 9070 4.097437 GTCCAAATCATCTGCATGTCATGT 59.903 41.667 14.26 0.00 0.00 3.21
2752 9071 4.097286 TCCAAATCATCTGCATGTCATGTG 59.903 41.667 14.26 7.92 0.00 3.21
2753 9072 3.710326 AATCATCTGCATGTCATGTGC 57.290 42.857 14.26 3.08 42.81 4.57
2762 9081 4.012319 GCATGTCATGTGCAAGTCTAAG 57.988 45.455 14.26 0.00 42.08 2.18
2763 9082 3.438087 GCATGTCATGTGCAAGTCTAAGT 59.562 43.478 14.26 0.00 42.08 2.24
2764 9083 4.083110 GCATGTCATGTGCAAGTCTAAGTT 60.083 41.667 14.26 0.00 42.08 2.66
2765 9084 5.563475 GCATGTCATGTGCAAGTCTAAGTTT 60.563 40.000 14.26 0.00 42.08 2.66
2766 9085 6.441274 CATGTCATGTGCAAGTCTAAGTTTT 58.559 36.000 4.53 0.00 0.00 2.43
2767 9086 7.584108 CATGTCATGTGCAAGTCTAAGTTTTA 58.416 34.615 4.53 0.00 0.00 1.52
2768 9087 7.744087 TGTCATGTGCAAGTCTAAGTTTTAT 57.256 32.000 0.00 0.00 0.00 1.40
2769 9088 7.584108 TGTCATGTGCAAGTCTAAGTTTTATG 58.416 34.615 0.00 0.00 0.00 1.90
2770 9089 7.228507 TGTCATGTGCAAGTCTAAGTTTTATGT 59.771 33.333 0.00 0.00 0.00 2.29
2771 9090 8.076178 GTCATGTGCAAGTCTAAGTTTTATGTT 58.924 33.333 0.00 0.00 0.00 2.71
2772 9091 8.629158 TCATGTGCAAGTCTAAGTTTTATGTTT 58.371 29.630 0.00 0.00 0.00 2.83
2773 9092 8.905702 CATGTGCAAGTCTAAGTTTTATGTTTC 58.094 33.333 0.00 0.00 0.00 2.78
2774 9093 7.990917 TGTGCAAGTCTAAGTTTTATGTTTCA 58.009 30.769 0.00 0.00 0.00 2.69
2775 9094 8.462811 TGTGCAAGTCTAAGTTTTATGTTTCAA 58.537 29.630 0.00 0.00 0.00 2.69
2776 9095 8.743099 GTGCAAGTCTAAGTTTTATGTTTCAAC 58.257 33.333 0.00 0.00 0.00 3.18
2777 9096 8.682710 TGCAAGTCTAAGTTTTATGTTTCAACT 58.317 29.630 0.00 0.00 31.90 3.16
2778 9097 9.516314 GCAAGTCTAAGTTTTATGTTTCAACTT 57.484 29.630 0.00 0.00 42.20 2.66
2790 9109 9.502145 TTTATGTTTCAACTTATCATTCATCGC 57.498 29.630 0.00 0.00 0.00 4.58
2791 9110 6.741992 TGTTTCAACTTATCATTCATCGCT 57.258 33.333 0.00 0.00 0.00 4.93
2792 9111 6.775088 TGTTTCAACTTATCATTCATCGCTC 58.225 36.000 0.00 0.00 0.00 5.03
2793 9112 6.371271 TGTTTCAACTTATCATTCATCGCTCA 59.629 34.615 0.00 0.00 0.00 4.26
2794 9113 6.983474 TTCAACTTATCATTCATCGCTCAA 57.017 33.333 0.00 0.00 0.00 3.02
2795 9114 6.349973 TCAACTTATCATTCATCGCTCAAC 57.650 37.500 0.00 0.00 0.00 3.18
2796 9115 6.108687 TCAACTTATCATTCATCGCTCAACT 58.891 36.000 0.00 0.00 0.00 3.16
2797 9116 7.264947 TCAACTTATCATTCATCGCTCAACTA 58.735 34.615 0.00 0.00 0.00 2.24
2798 9117 7.763985 TCAACTTATCATTCATCGCTCAACTAA 59.236 33.333 0.00 0.00 0.00 2.24
2799 9118 8.554528 CAACTTATCATTCATCGCTCAACTAAT 58.445 33.333 0.00 0.00 0.00 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 7.479150 TGATTTTAACATGCTATGCGATTTCA 58.521 30.769 0.00 0.00 0.00 2.69
123 124 6.434028 AGCCAAAGTAGCAAAGATTTATGTCA 59.566 34.615 0.00 0.00 0.00 3.58
128 129 7.370383 CAGAAAGCCAAAGTAGCAAAGATTTA 58.630 34.615 0.00 0.00 0.00 1.40
143 144 5.260424 TCCTTGTATAATGCAGAAAGCCAA 58.740 37.500 0.00 0.00 44.83 4.52
171 172 5.482006 TCCCAAATATATGCAGACGATCTG 58.518 41.667 9.73 9.73 46.90 2.90
173 174 6.801539 TTTCCCAAATATATGCAGACGATC 57.198 37.500 0.00 0.00 0.00 3.69
235 236 9.199982 CTGAATTGCATGTTAAGATGAAAGTTT 57.800 29.630 16.31 4.54 0.00 2.66
257 258 3.876914 ACTCGTTTTCTGATTGCACTGAA 59.123 39.130 0.00 0.00 0.00 3.02
261 262 3.952535 ACAACTCGTTTTCTGATTGCAC 58.047 40.909 0.00 0.00 0.00 4.57
275 276 6.693545 GGAGTAGATGTGAATTAGACAACTCG 59.306 42.308 3.85 0.00 32.80 4.18
276 277 7.777095 AGGAGTAGATGTGAATTAGACAACTC 58.223 38.462 9.78 9.78 31.89 3.01
277 278 7.726033 AGGAGTAGATGTGAATTAGACAACT 57.274 36.000 5.52 5.52 31.96 3.16
278 279 7.492994 GGAAGGAGTAGATGTGAATTAGACAAC 59.507 40.741 0.00 0.00 0.00 3.32
279 280 7.556844 GGAAGGAGTAGATGTGAATTAGACAA 58.443 38.462 0.00 0.00 0.00 3.18
280 281 6.183360 CGGAAGGAGTAGATGTGAATTAGACA 60.183 42.308 0.00 0.00 0.00 3.41
281 282 6.183360 ACGGAAGGAGTAGATGTGAATTAGAC 60.183 42.308 0.00 0.00 0.00 2.59
282 283 5.892119 ACGGAAGGAGTAGATGTGAATTAGA 59.108 40.000 0.00 0.00 0.00 2.10
283 284 6.150396 ACGGAAGGAGTAGATGTGAATTAG 57.850 41.667 0.00 0.00 0.00 1.73
284 285 6.406624 GGAACGGAAGGAGTAGATGTGAATTA 60.407 42.308 0.00 0.00 0.00 1.40
285 286 5.420409 GAACGGAAGGAGTAGATGTGAATT 58.580 41.667 0.00 0.00 0.00 2.17
286 287 4.141914 GGAACGGAAGGAGTAGATGTGAAT 60.142 45.833 0.00 0.00 0.00 2.57
287 288 3.194968 GGAACGGAAGGAGTAGATGTGAA 59.805 47.826 0.00 0.00 0.00 3.18
288 289 2.758979 GGAACGGAAGGAGTAGATGTGA 59.241 50.000 0.00 0.00 0.00 3.58
289 290 2.761208 AGGAACGGAAGGAGTAGATGTG 59.239 50.000 0.00 0.00 0.00 3.21
290 291 3.103080 AGGAACGGAAGGAGTAGATGT 57.897 47.619 0.00 0.00 0.00 3.06
291 292 5.593679 TTTAGGAACGGAAGGAGTAGATG 57.406 43.478 0.00 0.00 0.00 2.90
292 293 8.493787 AATATTTAGGAACGGAAGGAGTAGAT 57.506 34.615 0.00 0.00 0.00 1.98
293 294 7.909485 AATATTTAGGAACGGAAGGAGTAGA 57.091 36.000 0.00 0.00 0.00 2.59
294 295 7.985752 ACAAATATTTAGGAACGGAAGGAGTAG 59.014 37.037 0.00 0.00 0.00 2.57
295 296 7.854337 ACAAATATTTAGGAACGGAAGGAGTA 58.146 34.615 0.00 0.00 0.00 2.59
296 297 6.718294 ACAAATATTTAGGAACGGAAGGAGT 58.282 36.000 0.00 0.00 0.00 3.85
297 298 7.048512 AGACAAATATTTAGGAACGGAAGGAG 58.951 38.462 0.00 0.00 0.00 3.69
298 299 6.954232 AGACAAATATTTAGGAACGGAAGGA 58.046 36.000 0.00 0.00 0.00 3.36
299 300 7.625828 AAGACAAATATTTAGGAACGGAAGG 57.374 36.000 0.00 0.00 0.00 3.46
300 301 8.947115 AGAAAGACAAATATTTAGGAACGGAAG 58.053 33.333 0.00 0.00 0.00 3.46
301 302 8.857694 AGAAAGACAAATATTTAGGAACGGAA 57.142 30.769 0.00 0.00 0.00 4.30
302 303 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
303 304 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
316 317 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
317 318 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
318 319 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
319 320 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
320 321 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
321 322 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
322 323 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
323 324 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
324 325 8.082852 GTGTAGTCACTTGTTGAAATCTCTAGA 58.917 37.037 0.00 0.00 40.98 2.43
325 326 7.867909 TGTGTAGTCACTTGTTGAAATCTCTAG 59.132 37.037 0.00 0.00 44.14 2.43
326 327 7.652105 GTGTGTAGTCACTTGTTGAAATCTCTA 59.348 37.037 0.00 0.00 44.14 2.43
327 328 6.480320 GTGTGTAGTCACTTGTTGAAATCTCT 59.520 38.462 0.00 0.00 44.14 3.10
328 329 6.562270 CGTGTGTAGTCACTTGTTGAAATCTC 60.562 42.308 0.00 0.00 44.14 2.75
329 330 5.234329 CGTGTGTAGTCACTTGTTGAAATCT 59.766 40.000 0.00 0.00 44.14 2.40
330 331 5.432157 CGTGTGTAGTCACTTGTTGAAATC 58.568 41.667 0.00 0.00 44.14 2.17
331 332 4.272504 CCGTGTGTAGTCACTTGTTGAAAT 59.727 41.667 0.00 0.00 44.14 2.17
332 333 3.619483 CCGTGTGTAGTCACTTGTTGAAA 59.381 43.478 0.00 0.00 44.14 2.69
333 334 3.119065 TCCGTGTGTAGTCACTTGTTGAA 60.119 43.478 0.00 0.00 44.14 2.69
334 335 2.427812 TCCGTGTGTAGTCACTTGTTGA 59.572 45.455 0.00 0.00 44.14 3.18
335 336 2.794910 CTCCGTGTGTAGTCACTTGTTG 59.205 50.000 0.00 0.00 44.14 3.33
336 337 2.802057 GCTCCGTGTGTAGTCACTTGTT 60.802 50.000 0.00 0.00 44.14 2.83
337 338 1.269621 GCTCCGTGTGTAGTCACTTGT 60.270 52.381 0.00 0.00 44.14 3.16
338 339 1.269569 TGCTCCGTGTGTAGTCACTTG 60.270 52.381 0.00 0.00 44.14 3.16
339 340 1.037493 TGCTCCGTGTGTAGTCACTT 58.963 50.000 0.00 0.00 44.14 3.16
340 341 1.037493 TTGCTCCGTGTGTAGTCACT 58.963 50.000 0.00 0.00 44.14 3.41
341 342 1.860676 TTTGCTCCGTGTGTAGTCAC 58.139 50.000 0.00 0.00 44.08 3.67
342 343 2.605837 TTTTGCTCCGTGTGTAGTCA 57.394 45.000 0.00 0.00 0.00 3.41
343 344 3.064207 TCATTTTGCTCCGTGTGTAGTC 58.936 45.455 0.00 0.00 0.00 2.59
344 345 3.067106 CTCATTTTGCTCCGTGTGTAGT 58.933 45.455 0.00 0.00 0.00 2.73
345 346 3.067106 ACTCATTTTGCTCCGTGTGTAG 58.933 45.455 0.00 0.00 0.00 2.74
346 347 2.805671 CACTCATTTTGCTCCGTGTGTA 59.194 45.455 0.00 0.00 0.00 2.90
347 348 1.603802 CACTCATTTTGCTCCGTGTGT 59.396 47.619 0.00 0.00 0.00 3.72
348 349 1.872952 TCACTCATTTTGCTCCGTGTG 59.127 47.619 0.00 0.00 0.00 3.82
349 350 2.254546 TCACTCATTTTGCTCCGTGT 57.745 45.000 0.00 0.00 0.00 4.49
350 351 3.438087 AGATTCACTCATTTTGCTCCGTG 59.562 43.478 0.00 0.00 0.00 4.94
351 352 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
352 353 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
353 354 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
354 355 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
383 384 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
385 386 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
386 387 8.733458 GTTACCACATACGGATGTATATAGACA 58.267 37.037 14.23 2.07 44.82 3.41
387 388 8.186821 GGTTACCACATACGGATGTATATAGAC 58.813 40.741 14.23 7.65 44.82 2.59
388 389 7.889600 TGGTTACCACATACGGATGTATATAGA 59.110 37.037 14.23 0.00 44.82 1.98
389 390 8.058667 TGGTTACCACATACGGATGTATATAG 57.941 38.462 14.23 0.00 44.82 1.31
390 391 8.598202 ATGGTTACCACATACGGATGTATATA 57.402 34.615 14.23 3.33 44.82 0.86
391 392 6.921486 TGGTTACCACATACGGATGTATAT 57.079 37.500 14.23 4.37 44.82 0.86
392 393 6.921486 ATGGTTACCACATACGGATGTATA 57.079 37.500 14.23 6.38 44.82 1.47
393 394 5.818678 ATGGTTACCACATACGGATGTAT 57.181 39.130 14.23 7.46 44.82 2.29
394 395 5.617528 AATGGTTACCACATACGGATGTA 57.382 39.130 14.23 0.00 44.82 2.29
396 397 4.878971 TCAAATGGTTACCACATACGGATG 59.121 41.667 6.10 5.94 35.80 3.51
397 398 5.105567 TCAAATGGTTACCACATACGGAT 57.894 39.130 6.10 0.00 35.80 4.18
398 399 4.554960 TCAAATGGTTACCACATACGGA 57.445 40.909 6.10 0.00 35.80 4.69
399 400 6.934645 AGATATCAAATGGTTACCACATACGG 59.065 38.462 6.10 0.00 35.80 4.02
400 401 7.872993 AGAGATATCAAATGGTTACCACATACG 59.127 37.037 6.10 0.00 35.80 3.06
404 405 9.967451 TTTTAGAGATATCAAATGGTTACCACA 57.033 29.630 6.10 0.00 35.80 4.17
427 428 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
428 429 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
429 430 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
430 431 6.120220 CCCTCCGTTCCTAAATATTTGTCTT 58.880 40.000 11.05 0.00 0.00 3.01
431 432 5.191124 ACCCTCCGTTCCTAAATATTTGTCT 59.809 40.000 11.05 0.00 0.00 3.41
432 433 5.296035 CACCCTCCGTTCCTAAATATTTGTC 59.704 44.000 11.05 0.00 0.00 3.18
433 434 5.190677 CACCCTCCGTTCCTAAATATTTGT 58.809 41.667 11.05 0.00 0.00 2.83
434 435 5.190677 ACACCCTCCGTTCCTAAATATTTG 58.809 41.667 11.05 1.40 0.00 2.32
435 436 5.446260 ACACCCTCCGTTCCTAAATATTT 57.554 39.130 5.89 5.89 0.00 1.40
436 437 5.901276 TCTACACCCTCCGTTCCTAAATATT 59.099 40.000 0.00 0.00 0.00 1.28
437 438 5.461327 TCTACACCCTCCGTTCCTAAATAT 58.539 41.667 0.00 0.00 0.00 1.28
438 439 4.870636 TCTACACCCTCCGTTCCTAAATA 58.129 43.478 0.00 0.00 0.00 1.40
439 440 3.716431 TCTACACCCTCCGTTCCTAAAT 58.284 45.455 0.00 0.00 0.00 1.40
440 441 3.173953 TCTACACCCTCCGTTCCTAAA 57.826 47.619 0.00 0.00 0.00 1.85
441 442 2.905415 TCTACACCCTCCGTTCCTAA 57.095 50.000 0.00 0.00 0.00 2.69
442 443 2.024655 ACATCTACACCCTCCGTTCCTA 60.025 50.000 0.00 0.00 0.00 2.94
443 444 1.273098 ACATCTACACCCTCCGTTCCT 60.273 52.381 0.00 0.00 0.00 3.36
444 445 1.192428 ACATCTACACCCTCCGTTCC 58.808 55.000 0.00 0.00 0.00 3.62
445 446 3.329929 AAACATCTACACCCTCCGTTC 57.670 47.619 0.00 0.00 0.00 3.95
446 447 3.782656 AAAACATCTACACCCTCCGTT 57.217 42.857 0.00 0.00 0.00 4.44
447 448 3.782656 AAAAACATCTACACCCTCCGT 57.217 42.857 0.00 0.00 0.00 4.69
464 465 7.231925 GGAACTTAGATGTGACCCCTTTAAAAA 59.768 37.037 0.00 0.00 0.00 1.94
465 466 6.717997 GGAACTTAGATGTGACCCCTTTAAAA 59.282 38.462 0.00 0.00 0.00 1.52
466 467 6.243148 GGAACTTAGATGTGACCCCTTTAAA 58.757 40.000 0.00 0.00 0.00 1.52
467 468 5.280830 GGGAACTTAGATGTGACCCCTTTAA 60.281 44.000 0.00 0.00 33.99 1.52
468 469 4.226620 GGGAACTTAGATGTGACCCCTTTA 59.773 45.833 0.00 0.00 33.99 1.85
469 470 3.010250 GGGAACTTAGATGTGACCCCTTT 59.990 47.826 0.00 0.00 33.99 3.11
470 471 2.576648 GGGAACTTAGATGTGACCCCTT 59.423 50.000 0.00 0.00 33.99 3.95
471 472 2.197465 GGGAACTTAGATGTGACCCCT 58.803 52.381 0.00 0.00 33.99 4.79
472 473 1.913419 TGGGAACTTAGATGTGACCCC 59.087 52.381 0.00 0.00 36.91 4.95
473 474 2.304761 TGTGGGAACTTAGATGTGACCC 59.695 50.000 0.00 0.00 37.64 4.46
474 475 3.695830 TGTGGGAACTTAGATGTGACC 57.304 47.619 0.00 0.00 0.00 4.02
475 476 4.642429 AGTTGTGGGAACTTAGATGTGAC 58.358 43.478 0.00 0.00 0.00 3.67
476 477 4.974645 AGTTGTGGGAACTTAGATGTGA 57.025 40.909 0.00 0.00 0.00 3.58
480 481 9.726438 GCATTATATAGTTGTGGGAACTTAGAT 57.274 33.333 0.00 0.00 0.00 1.98
481 482 8.710239 TGCATTATATAGTTGTGGGAACTTAGA 58.290 33.333 0.00 0.00 0.00 2.10
482 483 8.902540 TGCATTATATAGTTGTGGGAACTTAG 57.097 34.615 0.00 0.00 0.00 2.18
483 484 7.444183 GCTGCATTATATAGTTGTGGGAACTTA 59.556 37.037 0.00 0.00 0.00 2.24
484 485 6.263168 GCTGCATTATATAGTTGTGGGAACTT 59.737 38.462 0.00 0.00 0.00 2.66
485 486 5.765182 GCTGCATTATATAGTTGTGGGAACT 59.235 40.000 0.00 0.00 0.00 3.01
486 487 5.530915 TGCTGCATTATATAGTTGTGGGAAC 59.469 40.000 0.00 0.00 0.00 3.62
487 488 5.689835 TGCTGCATTATATAGTTGTGGGAA 58.310 37.500 0.00 0.00 0.00 3.97
488 489 5.303259 TGCTGCATTATATAGTTGTGGGA 57.697 39.130 0.00 0.00 0.00 4.37
489 490 6.389830 TTTGCTGCATTATATAGTTGTGGG 57.610 37.500 1.84 0.00 0.00 4.61
563 564 6.398918 GTCTGTTTAGGACACATCTACATGT 58.601 40.000 2.69 2.69 44.72 3.21
564 565 5.812642 GGTCTGTTTAGGACACATCTACATG 59.187 44.000 0.00 0.00 35.61 3.21
565 566 5.104900 GGGTCTGTTTAGGACACATCTACAT 60.105 44.000 0.00 0.00 37.11 2.29
566 567 4.222145 GGGTCTGTTTAGGACACATCTACA 59.778 45.833 0.00 0.00 37.11 2.74
567 568 4.222145 TGGGTCTGTTTAGGACACATCTAC 59.778 45.833 0.00 0.00 41.46 2.59
568 569 4.422057 TGGGTCTGTTTAGGACACATCTA 58.578 43.478 0.00 0.00 41.46 1.98
569 570 3.248024 TGGGTCTGTTTAGGACACATCT 58.752 45.455 0.00 0.00 41.46 2.90
570 571 3.695830 TGGGTCTGTTTAGGACACATC 57.304 47.619 0.00 0.00 41.46 3.06
573 574 3.260884 TCTGATGGGTCTGTTTAGGACAC 59.739 47.826 0.00 0.00 37.60 3.67
574 575 3.516586 TCTGATGGGTCTGTTTAGGACA 58.483 45.455 0.00 0.00 35.61 4.02
575 576 4.553330 TTCTGATGGGTCTGTTTAGGAC 57.447 45.455 0.00 0.00 0.00 3.85
576 577 5.576563 TTTTCTGATGGGTCTGTTTAGGA 57.423 39.130 0.00 0.00 0.00 2.94
577 578 9.799106 ATATATTTTCTGATGGGTCTGTTTAGG 57.201 33.333 0.00 0.00 0.00 2.69
581 582 9.699410 TGAAATATATTTTCTGATGGGTCTGTT 57.301 29.630 11.92 0.00 0.00 3.16
582 583 9.699410 TTGAAATATATTTTCTGATGGGTCTGT 57.301 29.630 11.92 0.00 0.00 3.41
585 586 9.750125 GGTTTGAAATATATTTTCTGATGGGTC 57.250 33.333 11.92 0.00 0.00 4.46
586 587 9.492730 AGGTTTGAAATATATTTTCTGATGGGT 57.507 29.630 11.92 0.00 0.00 4.51
606 607 7.249186 TGAAGCAATGAAATCAAAAGGTTTG 57.751 32.000 0.00 0.00 0.00 2.93
607 608 7.862512 TTGAAGCAATGAAATCAAAAGGTTT 57.137 28.000 0.00 0.00 0.00 3.27
626 627 1.831736 ACGGAGGGAGTACCATTGAAG 59.168 52.381 0.00 0.00 43.89 3.02
639 640 5.634020 CGCTCTTATATTTCTTTACGGAGGG 59.366 44.000 0.00 0.00 0.00 4.30
640 641 6.214399 ACGCTCTTATATTTCTTTACGGAGG 58.786 40.000 0.00 0.00 0.00 4.30
641 642 7.695869 AACGCTCTTATATTTCTTTACGGAG 57.304 36.000 0.00 0.00 0.00 4.63
642 643 9.241317 CTTAACGCTCTTATATTTCTTTACGGA 57.759 33.333 0.00 0.00 0.00 4.69
643 644 8.485591 CCTTAACGCTCTTATATTTCTTTACGG 58.514 37.037 0.00 0.00 0.00 4.02
644 645 9.028185 ACCTTAACGCTCTTATATTTCTTTACG 57.972 33.333 0.00 0.00 0.00 3.18
647 648 8.880750 GTGACCTTAACGCTCTTATATTTCTTT 58.119 33.333 0.00 0.00 0.00 2.52
648 649 8.258708 AGTGACCTTAACGCTCTTATATTTCTT 58.741 33.333 0.00 0.00 0.00 2.52
649 650 7.783042 AGTGACCTTAACGCTCTTATATTTCT 58.217 34.615 0.00 0.00 0.00 2.52
650 651 9.694137 ATAGTGACCTTAACGCTCTTATATTTC 57.306 33.333 0.00 0.00 0.00 2.17
655 656 9.530633 CTAAAATAGTGACCTTAACGCTCTTAT 57.469 33.333 0.00 0.00 0.00 1.73
656 657 8.526147 ACTAAAATAGTGACCTTAACGCTCTTA 58.474 33.333 0.00 0.00 37.69 2.10
657 658 7.384477 ACTAAAATAGTGACCTTAACGCTCTT 58.616 34.615 0.00 0.00 37.69 2.85
658 659 6.932947 ACTAAAATAGTGACCTTAACGCTCT 58.067 36.000 0.00 0.00 37.69 4.09
659 660 7.592439 AACTAAAATAGTGACCTTAACGCTC 57.408 36.000 0.00 0.00 39.39 5.03
660 661 9.310716 GATAACTAAAATAGTGACCTTAACGCT 57.689 33.333 0.00 0.00 39.39 5.07
661 662 9.310716 AGATAACTAAAATAGTGACCTTAACGC 57.689 33.333 0.00 0.00 39.39 4.84
689 690 9.905713 TCCTCTGTAAACAAATATAAGAGCATT 57.094 29.630 0.00 0.00 0.00 3.56
690 691 9.905713 TTCCTCTGTAAACAAATATAAGAGCAT 57.094 29.630 0.00 0.00 0.00 3.79
691 692 9.383519 CTTCCTCTGTAAACAAATATAAGAGCA 57.616 33.333 0.00 0.00 0.00 4.26
692 693 9.384764 ACTTCCTCTGTAAACAAATATAAGAGC 57.615 33.333 0.00 0.00 0.00 4.09
708 709 9.594936 AGCTTGTAGATATAATACTTCCTCTGT 57.405 33.333 0.00 0.00 0.00 3.41
709 710 9.853555 CAGCTTGTAGATATAATACTTCCTCTG 57.146 37.037 0.00 0.00 0.00 3.35
710 711 9.594936 ACAGCTTGTAGATATAATACTTCCTCT 57.405 33.333 0.00 0.00 0.00 3.69
735 736 6.974622 TGAATTCCGTTAACGATTACTCCTAC 59.025 38.462 28.79 8.39 43.02 3.18
870 1147 1.750399 ATACTGCAAGCCGCTTGGG 60.750 57.895 29.66 10.27 41.31 4.12
871 1148 1.430632 CATACTGCAAGCCGCTTGG 59.569 57.895 29.66 18.55 41.31 3.61
872 1149 1.226491 GCATACTGCAAGCCGCTTG 60.226 57.895 25.91 25.91 44.26 4.01
873 1150 3.190878 GCATACTGCAAGCCGCTT 58.809 55.556 0.00 0.00 44.26 4.68
928 1226 2.878429 CGTGTCGCCTACTCTGCT 59.122 61.111 0.00 0.00 0.00 4.24
1021 1364 2.748058 GATGGGTGCCTGTTGACGGT 62.748 60.000 0.00 0.00 0.00 4.83
1027 1370 1.004745 AGATTTCGATGGGTGCCTGTT 59.995 47.619 0.00 0.00 0.00 3.16
1430 5833 1.208358 CGTTGTAGTCTCCGCGTCA 59.792 57.895 4.92 0.00 0.00 4.35
1448 5851 1.202382 CCGGGAGAACTATGAACGTCC 60.202 57.143 0.00 0.00 0.00 4.79
1451 5854 1.067212 CCTCCGGGAGAACTATGAACG 59.933 57.143 25.60 0.38 33.58 3.95
1477 5884 2.483877 TGTTCTGCCTAATTGCACTTCG 59.516 45.455 0.00 0.00 36.04 3.79
1504 5911 4.079970 ACGTCTTGAAGGAGACACTCATA 58.920 43.478 5.94 0.00 44.98 2.15
1538 7571 8.758829 TCAAAGGAGCTCTAAACATGTTCTATA 58.241 33.333 12.39 0.00 0.00 1.31
1542 7576 6.749923 ATCAAAGGAGCTCTAAACATGTTC 57.250 37.500 12.39 0.00 0.00 3.18
1571 7605 9.642343 AAACCCTCTAACTTTCTACAAAATTCT 57.358 29.630 0.00 0.00 0.00 2.40
1586 7622 9.339850 GATTCCTAAGGATTTAAACCCTCTAAC 57.660 37.037 0.14 0.00 31.17 2.34
1621 7658 4.915158 TCATGTGAATCAAACTGCAACA 57.085 36.364 0.00 0.00 0.00 3.33
1658 7695 6.616774 TGCAATGGATTTCAAAGGAAAAAC 57.383 33.333 0.00 0.00 45.52 2.43
1672 7709 6.138263 TCCTCCAAAATAGAATGCAATGGAT 58.862 36.000 0.00 0.00 35.15 3.41
1673 7710 5.517924 TCCTCCAAAATAGAATGCAATGGA 58.482 37.500 0.00 0.00 34.52 3.41
1674 7711 5.857471 TCCTCCAAAATAGAATGCAATGG 57.143 39.130 0.00 0.00 0.00 3.16
1675 7712 8.726870 ATTTTCCTCCAAAATAGAATGCAATG 57.273 30.769 0.00 0.00 42.02 2.82
1676 7713 9.743581 AAATTTTCCTCCAAAATAGAATGCAAT 57.256 25.926 0.00 0.00 42.86 3.56
1742 7866 4.078639 AGGAGTGCTTCATAACATAGGC 57.921 45.455 0.00 0.00 0.00 3.93
1851 7979 6.008960 AGGCTCTCTTTGATTCACAAGATTT 58.991 36.000 9.96 0.00 39.77 2.17
1885 8014 4.503910 TCGGGAGTTATGACTGAACAATG 58.496 43.478 0.00 0.00 35.88 2.82
1894 8023 2.756760 TGTGTACCTCGGGAGTTATGAC 59.243 50.000 0.00 0.00 0.00 3.06
1917 8046 5.894807 AGCTACGTCCGCTTAAATTACTAA 58.105 37.500 6.46 0.00 32.98 2.24
1930 8062 2.516923 CTGAGTTTGTAGCTACGTCCG 58.483 52.381 18.74 6.02 0.00 4.79
1938 8070 0.038310 AAGGGGGCTGAGTTTGTAGC 59.962 55.000 0.00 0.00 39.17 3.58
1951 8083 1.675641 CGTTGAAGCCTGAAGGGGG 60.676 63.158 0.00 0.00 35.18 5.40
1966 8098 0.965363 GAATCCATGGGTGCACCGTT 60.965 55.000 29.08 16.27 44.64 4.44
1967 8099 1.378514 GAATCCATGGGTGCACCGT 60.379 57.895 29.08 17.71 44.64 4.83
1978 8110 1.027357 GTCATGCAAGGCGAATCCAT 58.973 50.000 0.00 0.00 37.29 3.41
1981 8113 3.911989 CAGTCATGCAAGGCGAATC 57.088 52.632 0.00 0.00 0.00 2.52
1993 8125 2.338015 CCGCCAAAGCAGCAGTCAT 61.338 57.895 0.00 0.00 39.83 3.06
2013 8145 1.691219 GGGATTCCCTCTGCCAACA 59.309 57.895 14.98 0.00 41.34 3.33
2046 8181 2.762327 TCCCTAACCCAAACTACTAGCG 59.238 50.000 0.00 0.00 0.00 4.26
2050 8185 7.762610 ACTAAAAATCCCTAACCCAAACTACT 58.237 34.615 0.00 0.00 0.00 2.57
2091 8226 0.174162 GCACTGCCATTTGCCTAAGG 59.826 55.000 0.00 0.00 40.16 2.69
2123 8258 3.260884 ACGATTAGAGCCTGAAAGACCAA 59.739 43.478 0.00 0.00 34.07 3.67
2167 8302 6.150318 TCTATGTCAGAACTTTGTCGACTTC 58.850 40.000 17.92 11.82 0.00 3.01
2176 8312 8.154649 ACGACAAAAATCTATGTCAGAACTTT 57.845 30.769 6.70 0.00 44.84 2.66
2177 8313 7.657761 AGACGACAAAAATCTATGTCAGAACTT 59.342 33.333 6.70 0.00 44.84 2.66
2215 8363 1.542915 CGACGAGAAACCCTAACCTCA 59.457 52.381 0.00 0.00 0.00 3.86
2235 8383 2.693797 TCTCGACGTTGTCCAAGTAC 57.306 50.000 1.96 0.00 0.00 2.73
2271 8419 4.253685 CGTAGTCCTCACCATCAATTTGT 58.746 43.478 0.00 0.00 0.00 2.83
2274 8422 2.420129 GCCGTAGTCCTCACCATCAATT 60.420 50.000 0.00 0.00 0.00 2.32
2281 8429 1.668101 CCAGAGCCGTAGTCCTCACC 61.668 65.000 0.00 0.00 0.00 4.02
2286 8559 2.363925 ACCCCAGAGCCGTAGTCC 60.364 66.667 0.00 0.00 0.00 3.85
2314 8587 2.598099 CTGTGTGCATGTGCCCCA 60.598 61.111 2.07 0.00 41.18 4.96
2346 8620 2.690778 GCTGGCGCAACCTTGTAGG 61.691 63.158 10.83 0.00 40.22 3.18
2362 8636 2.131854 TGCCTCTCTCCTACTAGAGCT 58.868 52.381 0.00 0.00 42.36 4.09
2374 8648 2.348998 CAAGCCGGTTGCCTCTCT 59.651 61.111 1.90 0.00 42.71 3.10
2385 8670 1.789078 AACAAGCTGTCAGCAAGCCG 61.789 55.000 26.23 11.62 45.56 5.52
2386 8671 0.039708 GAACAAGCTGTCAGCAAGCC 60.040 55.000 26.23 9.90 45.56 4.35
2387 8672 0.950116 AGAACAAGCTGTCAGCAAGC 59.050 50.000 26.23 10.66 45.56 4.01
2388 8673 1.945394 ACAGAACAAGCTGTCAGCAAG 59.055 47.619 26.23 19.13 45.54 4.01
2389 8674 2.042686 ACAGAACAAGCTGTCAGCAA 57.957 45.000 26.23 0.00 45.54 3.91
2390 8675 3.786656 ACAGAACAAGCTGTCAGCA 57.213 47.368 26.23 0.00 45.54 4.41
2397 8682 2.628657 ACTACCTTCGACAGAACAAGCT 59.371 45.455 0.00 0.00 32.15 3.74
2412 8697 0.902531 CCACCGAATGACCACTACCT 59.097 55.000 0.00 0.00 0.00 3.08
2427 8712 1.331399 GGTCTGCTCCCTAGTCCACC 61.331 65.000 0.00 0.00 0.00 4.61
2432 8718 0.553819 ATCGAGGTCTGCTCCCTAGT 59.446 55.000 0.00 0.00 30.60 2.57
2453 8739 6.317642 GGCACCCAAACAAATAAAAGAAACTT 59.682 34.615 0.00 0.00 0.00 2.66
2461 8747 4.407296 ACTCAAGGCACCCAAACAAATAAA 59.593 37.500 0.00 0.00 0.00 1.40
2466 8752 1.859302 AACTCAAGGCACCCAAACAA 58.141 45.000 0.00 0.00 0.00 2.83
2468 8754 2.031870 AGAAACTCAAGGCACCCAAAC 58.968 47.619 0.00 0.00 0.00 2.93
2482 8768 9.167311 GGACACAAATCAATCAGTATAGAAACT 57.833 33.333 0.00 0.00 0.00 2.66
2483 8769 8.946085 TGGACACAAATCAATCAGTATAGAAAC 58.054 33.333 0.00 0.00 0.00 2.78
2484 8770 9.685276 ATGGACACAAATCAATCAGTATAGAAA 57.315 29.630 0.00 0.00 0.00 2.52
2490 8776 5.353956 CGGAATGGACACAAATCAATCAGTA 59.646 40.000 0.00 0.00 0.00 2.74
2491 8777 4.156556 CGGAATGGACACAAATCAATCAGT 59.843 41.667 0.00 0.00 0.00 3.41
2492 8778 4.665212 CGGAATGGACACAAATCAATCAG 58.335 43.478 0.00 0.00 0.00 2.90
2494 8788 3.119531 TGCGGAATGGACACAAATCAATC 60.120 43.478 0.00 0.00 0.00 2.67
2497 8791 1.902938 TGCGGAATGGACACAAATCA 58.097 45.000 0.00 0.00 0.00 2.57
2509 8803 5.722021 ATGGTTCTAACTTTTTGCGGAAT 57.278 34.783 0.00 0.00 0.00 3.01
2512 8806 5.622770 AGTATGGTTCTAACTTTTTGCGG 57.377 39.130 0.00 0.00 0.00 5.69
2521 8815 5.066246 ACTCGCTGACTAGTATGGTTCTAAC 59.934 44.000 0.00 0.00 0.00 2.34
2527 8821 6.466885 AATAAACTCGCTGACTAGTATGGT 57.533 37.500 0.00 0.00 0.00 3.55
2530 8824 8.033038 TCACAAAATAAACTCGCTGACTAGTAT 58.967 33.333 0.00 0.00 0.00 2.12
2660 8979 4.516365 TCGTGGATCAGAGATCATCATG 57.484 45.455 9.02 4.77 0.00 3.07
2662 8981 5.072741 TGTATCGTGGATCAGAGATCATCA 58.927 41.667 9.02 0.00 0.00 3.07
2670 8989 4.753516 ACCAAATGTATCGTGGATCAGA 57.246 40.909 0.00 0.00 36.23 3.27
2671 8990 6.705825 TCAATACCAAATGTATCGTGGATCAG 59.294 38.462 0.00 0.00 39.28 2.90
2678 8997 7.915293 TGTTCTTCAATACCAAATGTATCGT 57.085 32.000 0.00 0.00 39.28 3.73
2711 9030 9.567776 TGATTTGGACAAGTAGAGAACATTTAA 57.432 29.630 0.00 0.00 0.00 1.52
2712 9031 9.739276 ATGATTTGGACAAGTAGAGAACATTTA 57.261 29.630 0.00 0.00 0.00 1.40
2713 9032 8.641498 ATGATTTGGACAAGTAGAGAACATTT 57.359 30.769 0.00 0.00 0.00 2.32
2714 9033 8.105829 AGATGATTTGGACAAGTAGAGAACATT 58.894 33.333 0.00 0.00 0.00 2.71
2715 9034 7.551974 CAGATGATTTGGACAAGTAGAGAACAT 59.448 37.037 0.00 0.00 0.00 2.71
2716 9035 6.875726 CAGATGATTTGGACAAGTAGAGAACA 59.124 38.462 0.00 0.00 0.00 3.18
2717 9036 6.183360 GCAGATGATTTGGACAAGTAGAGAAC 60.183 42.308 0.00 0.00 0.00 3.01
2718 9037 5.877012 GCAGATGATTTGGACAAGTAGAGAA 59.123 40.000 0.00 0.00 0.00 2.87
2719 9038 5.046376 TGCAGATGATTTGGACAAGTAGAGA 60.046 40.000 0.00 0.00 0.00 3.10
2720 9039 5.181009 TGCAGATGATTTGGACAAGTAGAG 58.819 41.667 0.00 0.00 0.00 2.43
2721 9040 5.164620 TGCAGATGATTTGGACAAGTAGA 57.835 39.130 0.00 0.00 0.00 2.59
2722 9041 5.356190 ACATGCAGATGATTTGGACAAGTAG 59.644 40.000 0.00 0.00 33.36 2.57
2723 9042 5.255687 ACATGCAGATGATTTGGACAAGTA 58.744 37.500 0.00 0.00 33.36 2.24
2724 9043 4.084287 ACATGCAGATGATTTGGACAAGT 58.916 39.130 0.00 0.00 33.36 3.16
2725 9044 4.157105 TGACATGCAGATGATTTGGACAAG 59.843 41.667 0.00 0.00 33.36 3.16
2726 9045 4.080687 TGACATGCAGATGATTTGGACAA 58.919 39.130 0.00 0.00 33.36 3.18
2727 9046 3.688235 TGACATGCAGATGATTTGGACA 58.312 40.909 0.00 0.00 33.36 4.02
2728 9047 4.097437 ACATGACATGCAGATGATTTGGAC 59.903 41.667 15.49 0.00 33.36 4.02
2729 9048 4.097286 CACATGACATGCAGATGATTTGGA 59.903 41.667 15.49 0.00 33.36 3.53
2730 9049 4.359706 CACATGACATGCAGATGATTTGG 58.640 43.478 15.49 0.00 33.36 3.28
2731 9050 3.796717 GCACATGACATGCAGATGATTTG 59.203 43.478 15.49 4.17 42.88 2.32
2732 9051 4.041740 GCACATGACATGCAGATGATTT 57.958 40.909 15.49 0.00 42.88 2.17
2733 9052 3.710326 GCACATGACATGCAGATGATT 57.290 42.857 15.49 0.00 42.88 2.57
2741 9060 3.438087 ACTTAGACTTGCACATGACATGC 59.562 43.478 15.49 4.66 43.68 4.06
2742 9061 5.618056 AACTTAGACTTGCACATGACATG 57.382 39.130 14.02 14.02 0.00 3.21
2743 9062 6.639632 AAAACTTAGACTTGCACATGACAT 57.360 33.333 0.00 0.00 0.00 3.06
2744 9063 7.228507 ACATAAAACTTAGACTTGCACATGACA 59.771 33.333 0.00 0.00 0.00 3.58
2745 9064 7.584987 ACATAAAACTTAGACTTGCACATGAC 58.415 34.615 0.00 0.00 0.00 3.06
2746 9065 7.744087 ACATAAAACTTAGACTTGCACATGA 57.256 32.000 0.00 0.00 0.00 3.07
2747 9066 8.801715 AAACATAAAACTTAGACTTGCACATG 57.198 30.769 0.00 0.00 0.00 3.21
2748 9067 8.629158 TGAAACATAAAACTTAGACTTGCACAT 58.371 29.630 0.00 0.00 0.00 3.21
2749 9068 7.990917 TGAAACATAAAACTTAGACTTGCACA 58.009 30.769 0.00 0.00 0.00 4.57
2750 9069 8.743099 GTTGAAACATAAAACTTAGACTTGCAC 58.257 33.333 0.00 0.00 0.00 4.57
2751 9070 8.682710 AGTTGAAACATAAAACTTAGACTTGCA 58.317 29.630 0.00 0.00 29.98 4.08
2752 9071 9.516314 AAGTTGAAACATAAAACTTAGACTTGC 57.484 29.630 0.00 0.00 41.19 4.01
2764 9083 9.502145 GCGATGAATGATAAGTTGAAACATAAA 57.498 29.630 0.00 0.00 0.00 1.40
2765 9084 8.892723 AGCGATGAATGATAAGTTGAAACATAA 58.107 29.630 0.00 0.00 0.00 1.90
2766 9085 8.437360 AGCGATGAATGATAAGTTGAAACATA 57.563 30.769 0.00 0.00 0.00 2.29
2767 9086 7.066163 TGAGCGATGAATGATAAGTTGAAACAT 59.934 33.333 0.00 0.00 0.00 2.71
2768 9087 6.371271 TGAGCGATGAATGATAAGTTGAAACA 59.629 34.615 0.00 0.00 0.00 2.83
2769 9088 6.775088 TGAGCGATGAATGATAAGTTGAAAC 58.225 36.000 0.00 0.00 0.00 2.78
2770 9089 6.983474 TGAGCGATGAATGATAAGTTGAAA 57.017 33.333 0.00 0.00 0.00 2.69
2771 9090 6.595326 AGTTGAGCGATGAATGATAAGTTGAA 59.405 34.615 0.00 0.00 0.00 2.69
2772 9091 6.108687 AGTTGAGCGATGAATGATAAGTTGA 58.891 36.000 0.00 0.00 0.00 3.18
2773 9092 6.355397 AGTTGAGCGATGAATGATAAGTTG 57.645 37.500 0.00 0.00 0.00 3.16
2774 9093 8.668510 ATTAGTTGAGCGATGAATGATAAGTT 57.331 30.769 0.00 0.00 0.00 2.66



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.