Multiple sequence alignment - TraesCS6B01G358700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G358700 chr6B 100.000 3467 0 0 1 3467 626881497 626884963 0.000000e+00 6403.0
1 TraesCS6B01G358700 chr6B 96.410 1504 52 2 983 2486 626811889 626813390 0.000000e+00 2477.0
2 TraesCS6B01G358700 chr6B 91.882 1626 115 8 845 2458 626590758 626589138 0.000000e+00 2255.0
3 TraesCS6B01G358700 chr6B 93.057 1498 103 1 978 2475 626458122 626456626 0.000000e+00 2189.0
4 TraesCS6B01G358700 chr6B 85.299 619 67 15 242 845 256476759 256477368 4.920000e-173 617.0
5 TraesCS6B01G358700 chr6B 94.771 153 5 3 845 997 626811721 626811870 5.780000e-58 235.0
6 TraesCS6B01G358700 chr6B 85.714 196 17 9 6 193 234677302 234677110 2.730000e-46 196.0
7 TraesCS6B01G358700 chr6B 81.633 196 30 5 1 194 635165294 635165103 1.290000e-34 158.0
8 TraesCS6B01G358700 chr6B 81.967 122 12 5 80 193 624661758 624661639 1.020000e-15 95.3
9 TraesCS6B01G358700 chr6B 96.154 52 1 1 2546 2596 626813473 626813524 2.220000e-12 84.2
10 TraesCS6B01G358700 chr6B 89.474 57 5 1 2512 2567 626456514 626456458 1.730000e-08 71.3
11 TraesCS6B01G358700 chr6A 93.133 1529 101 4 949 2475 560567628 560569154 0.000000e+00 2239.0
12 TraesCS6B01G358700 chr6A 91.246 971 85 0 1488 2458 560104775 560103805 0.000000e+00 1323.0
13 TraesCS6B01G358700 chr6D 92.754 1518 109 1 969 2486 417890729 417892245 0.000000e+00 2193.0
14 TraesCS6B01G358700 chr6D 92.158 1492 112 4 969 2458 417695284 417693796 0.000000e+00 2102.0
15 TraesCS6B01G358700 chr6D 96.682 844 26 2 2624 3467 235779245 235778404 0.000000e+00 1402.0
16 TraesCS6B01G358700 chr4B 97.156 844 24 0 2624 3467 376255667 376256510 0.000000e+00 1426.0
17 TraesCS6B01G358700 chr4B 96.450 845 28 2 2624 3467 479403593 479402750 0.000000e+00 1393.0
18 TraesCS6B01G358700 chr2B 97.156 844 24 0 2624 3467 429166499 429165656 0.000000e+00 1426.0
19 TraesCS6B01G358700 chr2B 92.857 112 6 2 8 118 774837712 774837602 9.960000e-36 161.0
20 TraesCS6B01G358700 chr1B 96.801 844 27 0 2624 3467 256209693 256208850 0.000000e+00 1410.0
21 TraesCS6B01G358700 chr1B 96.801 844 27 0 2624 3467 668915831 668914988 0.000000e+00 1410.0
22 TraesCS6B01G358700 chr1B 85.390 616 75 8 242 847 381380356 381380966 2.940000e-175 625.0
23 TraesCS6B01G358700 chr1B 83.459 665 76 18 197 845 76146320 76146966 3.850000e-164 588.0
24 TraesCS6B01G358700 chr1B 85.864 191 17 9 10 194 488477752 488477938 9.820000e-46 195.0
25 TraesCS6B01G358700 chr1B 82.123 179 25 7 19 193 559124994 559124819 2.790000e-31 147.0
26 TraesCS6B01G358700 chr5B 96.445 844 30 0 2624 3467 368697096 368696253 0.000000e+00 1393.0
27 TraesCS6B01G358700 chr5B 78.788 198 35 6 1 193 618209821 618209626 3.630000e-25 126.0
28 TraesCS6B01G358700 chr1A 94.055 841 49 1 2624 3464 280489579 280490418 0.000000e+00 1275.0
29 TraesCS6B01G358700 chr1D 85.984 849 114 5 2621 3467 487693262 487694107 0.000000e+00 904.0
30 TraesCS6B01G358700 chr4A 85.607 667 65 21 197 845 662390853 662390200 0.000000e+00 671.0
31 TraesCS6B01G358700 chr3B 85.581 645 63 21 194 819 123479639 123479006 0.000000e+00 649.0
32 TraesCS6B01G358700 chr3B 84.101 673 72 18 199 847 41562253 41561592 4.920000e-173 617.0
33 TraesCS6B01G358700 chr3B 86.732 407 39 8 451 845 720744843 720744440 4.110000e-119 438.0
34 TraesCS6B01G358700 chr5A 84.848 660 80 16 197 845 423550628 423551278 0.000000e+00 647.0
35 TraesCS6B01G358700 chr7B 83.852 675 70 20 199 843 654170355 654171020 1.060000e-169 606.0
36 TraesCS6B01G358700 chr7B 84.800 625 64 22 242 845 10914341 10914955 1.780000e-167 599.0
37 TraesCS6B01G358700 chr7B 89.119 193 16 3 1 191 707017360 707017549 5.780000e-58 235.0
38 TraesCS6B01G358700 chr5D 83.866 657 83 21 198 843 362554819 362555463 3.830000e-169 604.0
39 TraesCS6B01G358700 chr4D 75.569 483 87 18 1 470 463920984 463921448 3.510000e-50 209.0
40 TraesCS6B01G358700 chr7D 83.505 194 25 6 1 189 602912281 602912472 1.280000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G358700 chr6B 626881497 626884963 3466 False 6403.000000 6403 100.000000 1 3467 1 chr6B.!!$F2 3466
1 TraesCS6B01G358700 chr6B 626589138 626590758 1620 True 2255.000000 2255 91.882000 845 2458 1 chr6B.!!$R3 1613
2 TraesCS6B01G358700 chr6B 626456458 626458122 1664 True 1130.150000 2189 91.265500 978 2567 2 chr6B.!!$R5 1589
3 TraesCS6B01G358700 chr6B 626811721 626813524 1803 False 932.066667 2477 95.778333 845 2596 3 chr6B.!!$F3 1751
4 TraesCS6B01G358700 chr6B 256476759 256477368 609 False 617.000000 617 85.299000 242 845 1 chr6B.!!$F1 603
5 TraesCS6B01G358700 chr6A 560567628 560569154 1526 False 2239.000000 2239 93.133000 949 2475 1 chr6A.!!$F1 1526
6 TraesCS6B01G358700 chr6A 560103805 560104775 970 True 1323.000000 1323 91.246000 1488 2458 1 chr6A.!!$R1 970
7 TraesCS6B01G358700 chr6D 417890729 417892245 1516 False 2193.000000 2193 92.754000 969 2486 1 chr6D.!!$F1 1517
8 TraesCS6B01G358700 chr6D 417693796 417695284 1488 True 2102.000000 2102 92.158000 969 2458 1 chr6D.!!$R2 1489
9 TraesCS6B01G358700 chr6D 235778404 235779245 841 True 1402.000000 1402 96.682000 2624 3467 1 chr6D.!!$R1 843
10 TraesCS6B01G358700 chr4B 376255667 376256510 843 False 1426.000000 1426 97.156000 2624 3467 1 chr4B.!!$F1 843
11 TraesCS6B01G358700 chr4B 479402750 479403593 843 True 1393.000000 1393 96.450000 2624 3467 1 chr4B.!!$R1 843
12 TraesCS6B01G358700 chr2B 429165656 429166499 843 True 1426.000000 1426 97.156000 2624 3467 1 chr2B.!!$R1 843
13 TraesCS6B01G358700 chr1B 256208850 256209693 843 True 1410.000000 1410 96.801000 2624 3467 1 chr1B.!!$R1 843
14 TraesCS6B01G358700 chr1B 668914988 668915831 843 True 1410.000000 1410 96.801000 2624 3467 1 chr1B.!!$R3 843
15 TraesCS6B01G358700 chr1B 381380356 381380966 610 False 625.000000 625 85.390000 242 847 1 chr1B.!!$F2 605
16 TraesCS6B01G358700 chr1B 76146320 76146966 646 False 588.000000 588 83.459000 197 845 1 chr1B.!!$F1 648
17 TraesCS6B01G358700 chr5B 368696253 368697096 843 True 1393.000000 1393 96.445000 2624 3467 1 chr5B.!!$R1 843
18 TraesCS6B01G358700 chr1A 280489579 280490418 839 False 1275.000000 1275 94.055000 2624 3464 1 chr1A.!!$F1 840
19 TraesCS6B01G358700 chr1D 487693262 487694107 845 False 904.000000 904 85.984000 2621 3467 1 chr1D.!!$F1 846
20 TraesCS6B01G358700 chr4A 662390200 662390853 653 True 671.000000 671 85.607000 197 845 1 chr4A.!!$R1 648
21 TraesCS6B01G358700 chr3B 123479006 123479639 633 True 649.000000 649 85.581000 194 819 1 chr3B.!!$R2 625
22 TraesCS6B01G358700 chr3B 41561592 41562253 661 True 617.000000 617 84.101000 199 847 1 chr3B.!!$R1 648
23 TraesCS6B01G358700 chr5A 423550628 423551278 650 False 647.000000 647 84.848000 197 845 1 chr5A.!!$F1 648
24 TraesCS6B01G358700 chr7B 654170355 654171020 665 False 606.000000 606 83.852000 199 843 1 chr7B.!!$F2 644
25 TraesCS6B01G358700 chr7B 10914341 10914955 614 False 599.000000 599 84.800000 242 845 1 chr7B.!!$F1 603
26 TraesCS6B01G358700 chr5D 362554819 362555463 644 False 604.000000 604 83.866000 198 843 1 chr5D.!!$F1 645


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.102300 GTGAAAGCAAAACCGTGCCT 59.898 50.000 0.00 0.0 46.14 4.75 F
187 188 0.383949 TGAAAGCAAAACCGTGCCTC 59.616 50.000 0.00 0.0 46.14 4.70 F
333 363 0.602905 CCTTTCCGAAAGAGGCACGT 60.603 55.000 20.43 0.0 41.02 4.49 F
2046 2209 1.153046 CGGGTGTGTGGTCAACCTT 60.153 57.895 0.10 0.0 42.51 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2004 2167 1.068753 CTCCATCCTCGCTGCGATT 59.931 57.895 26.15 10.67 34.61 3.34 R
2077 2240 2.110213 GGTCACCACCACGCTCAA 59.890 61.111 0.00 0.00 43.17 3.02 R
2187 2350 1.102222 GGTCCTGCTCGACGAGGTAT 61.102 60.000 25.31 0.00 33.30 2.73 R
3064 3303 0.454957 CTCAAACCAAAGCCATCGCG 60.455 55.000 0.00 0.00 41.18 5.87 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.726291 AAAAACCAATCTGGGAACACG 57.274 42.857 0.00 0.00 43.37 4.49
43 44 1.616159 AAACCAATCTGGGAACACGG 58.384 50.000 0.00 0.00 43.37 4.94
44 45 0.251165 AACCAATCTGGGAACACGGG 60.251 55.000 0.00 0.00 43.37 5.28
45 46 1.378762 CCAATCTGGGAACACGGGT 59.621 57.895 0.00 0.00 32.67 5.28
46 47 0.251165 CCAATCTGGGAACACGGGTT 60.251 55.000 0.56 0.56 40.76 4.11
47 48 1.616159 CAATCTGGGAACACGGGTTT 58.384 50.000 3.63 0.00 37.36 3.27
48 49 1.960689 CAATCTGGGAACACGGGTTTT 59.039 47.619 3.63 0.00 37.36 2.43
49 50 2.364002 CAATCTGGGAACACGGGTTTTT 59.636 45.455 3.63 0.00 37.36 1.94
69 70 4.473477 TTTTTCCTTTCCGAAAAAGGCA 57.527 36.364 19.04 9.91 43.39 4.75
70 71 3.446310 TTTCCTTTCCGAAAAAGGCAC 57.554 42.857 19.04 0.00 44.92 5.01
71 72 2.060050 TCCTTTCCGAAAAAGGCACA 57.940 45.000 19.04 5.24 44.92 4.57
72 73 1.679153 TCCTTTCCGAAAAAGGCACAC 59.321 47.619 19.04 0.00 44.92 3.82
73 74 1.269569 CCTTTCCGAAAAAGGCACACC 60.270 52.381 14.00 0.00 40.17 4.16
74 75 0.747852 TTTCCGAAAAAGGCACACCC 59.252 50.000 0.00 0.00 36.11 4.61
75 76 1.448922 TTCCGAAAAAGGCACACCCG 61.449 55.000 0.00 0.00 39.21 5.28
76 77 2.190841 CCGAAAAAGGCACACCCGT 61.191 57.895 0.00 0.00 39.21 5.28
77 78 1.008995 CGAAAAAGGCACACCCGTG 60.009 57.895 0.00 0.00 46.56 4.94
85 86 2.357517 CACACCCGTGCCTCTGAC 60.358 66.667 0.00 0.00 36.06 3.51
86 87 3.991051 ACACCCGTGCCTCTGACG 61.991 66.667 0.00 0.00 36.56 4.35
87 88 3.680786 CACCCGTGCCTCTGACGA 61.681 66.667 0.00 0.00 39.21 4.20
88 89 2.915659 ACCCGTGCCTCTGACGAA 60.916 61.111 0.00 0.00 39.21 3.85
89 90 2.342279 CCCGTGCCTCTGACGAAA 59.658 61.111 0.00 0.00 39.21 3.46
90 91 1.079127 CCCGTGCCTCTGACGAAAT 60.079 57.895 0.00 0.00 39.21 2.17
91 92 1.084370 CCCGTGCCTCTGACGAAATC 61.084 60.000 0.00 0.00 39.21 2.17
92 93 0.389817 CCGTGCCTCTGACGAAATCA 60.390 55.000 0.00 0.00 39.21 2.57
93 94 0.716108 CGTGCCTCTGACGAAATCAC 59.284 55.000 0.00 0.00 39.21 3.06
94 95 1.795768 GTGCCTCTGACGAAATCACA 58.204 50.000 0.00 0.00 32.37 3.58
95 96 2.143122 GTGCCTCTGACGAAATCACAA 58.857 47.619 0.00 0.00 32.37 3.33
96 97 2.744202 GTGCCTCTGACGAAATCACAAT 59.256 45.455 0.00 0.00 32.37 2.71
97 98 3.002791 TGCCTCTGACGAAATCACAATC 58.997 45.455 0.00 0.00 32.37 2.67
98 99 2.029728 GCCTCTGACGAAATCACAATCG 59.970 50.000 0.00 0.00 44.33 3.34
104 105 2.442189 CGAAATCACAATCGTGCCTC 57.558 50.000 0.00 0.00 43.28 4.70
105 106 2.002586 CGAAATCACAATCGTGCCTCT 58.997 47.619 0.00 0.00 43.28 3.69
106 107 2.029728 CGAAATCACAATCGTGCCTCTC 59.970 50.000 0.00 0.00 43.28 3.20
107 108 1.645034 AATCACAATCGTGCCTCTCG 58.355 50.000 0.00 0.00 43.28 4.04
108 109 0.807667 ATCACAATCGTGCCTCTCGC 60.808 55.000 0.00 0.00 43.28 5.03
140 141 8.766000 AAACAGAAAACGTGTTTTTATCCTTT 57.234 26.923 11.63 4.22 43.97 3.11
141 142 7.980742 ACAGAAAACGTGTTTTTATCCTTTC 57.019 32.000 11.63 0.00 42.26 2.62
142 143 7.768240 ACAGAAAACGTGTTTTTATCCTTTCT 58.232 30.769 11.63 0.00 42.26 2.52
143 144 8.050121 CAGAAAACGTGTTTTTATCCTTTCTG 57.950 34.615 11.63 14.17 42.26 3.02
144 145 7.913297 CAGAAAACGTGTTTTTATCCTTTCTGA 59.087 33.333 19.73 0.00 45.76 3.27
145 146 8.463607 AGAAAACGTGTTTTTATCCTTTCTGAA 58.536 29.630 11.63 0.00 42.26 3.02
146 147 8.989653 AAAACGTGTTTTTATCCTTTCTGAAA 57.010 26.923 4.93 2.44 39.52 2.69
147 148 8.989653 AAACGTGTTTTTATCCTTTCTGAAAA 57.010 26.923 4.18 0.00 0.00 2.29
148 149 8.989653 AACGTGTTTTTATCCTTTCTGAAAAA 57.010 26.923 4.18 0.00 0.00 1.94
149 150 8.628882 ACGTGTTTTTATCCTTTCTGAAAAAG 57.371 30.769 4.18 0.00 32.90 2.27
150 151 8.463607 ACGTGTTTTTATCCTTTCTGAAAAAGA 58.536 29.630 4.18 4.85 32.90 2.52
151 152 8.743099 CGTGTTTTTATCCTTTCTGAAAAAGAC 58.257 33.333 4.18 8.21 39.64 3.01
152 153 9.581099 GTGTTTTTATCCTTTCTGAAAAAGACA 57.419 29.630 4.18 4.46 41.25 3.41
153 154 9.581099 TGTTTTTATCCTTTCTGAAAAAGACAC 57.419 29.630 4.18 0.00 33.46 3.67
154 155 8.743099 GTTTTTATCCTTTCTGAAAAAGACACG 58.257 33.333 4.18 0.00 33.46 4.49
155 156 3.963383 TCCTTTCTGAAAAAGACACGC 57.037 42.857 4.18 0.00 33.46 5.34
156 157 2.616842 TCCTTTCTGAAAAAGACACGCC 59.383 45.455 4.18 0.00 33.46 5.68
157 158 2.287608 CCTTTCTGAAAAAGACACGCCC 60.288 50.000 4.18 0.00 33.46 6.13
158 159 0.941542 TTCTGAAAAAGACACGCCCG 59.058 50.000 0.00 0.00 33.46 6.13
159 160 0.179067 TCTGAAAAAGACACGCCCGT 60.179 50.000 0.00 0.00 0.00 5.28
171 172 4.373116 GCCCGTGCCTCTCGTGAA 62.373 66.667 0.00 0.00 0.00 3.18
172 173 2.342279 CCCGTGCCTCTCGTGAAA 59.658 61.111 0.00 0.00 0.00 2.69
173 174 1.738099 CCCGTGCCTCTCGTGAAAG 60.738 63.158 0.00 0.00 0.00 2.62
174 175 2.383527 CCGTGCCTCTCGTGAAAGC 61.384 63.158 2.99 2.99 0.00 3.51
175 176 1.664649 CGTGCCTCTCGTGAAAGCA 60.665 57.895 7.54 7.54 31.63 3.91
176 177 1.221466 CGTGCCTCTCGTGAAAGCAA 61.221 55.000 11.96 0.00 34.62 3.91
177 178 0.944386 GTGCCTCTCGTGAAAGCAAA 59.056 50.000 11.96 0.00 34.62 3.68
178 179 1.333619 GTGCCTCTCGTGAAAGCAAAA 59.666 47.619 11.96 0.00 34.62 2.44
179 180 1.333619 TGCCTCTCGTGAAAGCAAAAC 59.666 47.619 8.84 0.00 31.30 2.43
180 181 1.335051 GCCTCTCGTGAAAGCAAAACC 60.335 52.381 4.73 0.00 0.00 3.27
181 182 1.069906 CCTCTCGTGAAAGCAAAACCG 60.070 52.381 0.00 0.00 0.00 4.44
182 183 1.597663 CTCTCGTGAAAGCAAAACCGT 59.402 47.619 0.00 0.00 0.00 4.83
183 184 1.329292 TCTCGTGAAAGCAAAACCGTG 59.671 47.619 0.00 0.00 0.00 4.94
184 185 0.248296 TCGTGAAAGCAAAACCGTGC 60.248 50.000 0.00 0.00 45.28 5.34
185 186 1.206115 CGTGAAAGCAAAACCGTGCC 61.206 55.000 0.00 0.00 46.14 5.01
186 187 0.102300 GTGAAAGCAAAACCGTGCCT 59.898 50.000 0.00 0.00 46.14 4.75
187 188 0.383949 TGAAAGCAAAACCGTGCCTC 59.616 50.000 0.00 0.00 46.14 4.70
188 189 0.668535 GAAAGCAAAACCGTGCCTCT 59.331 50.000 0.00 0.00 46.14 3.69
189 190 0.668535 AAAGCAAAACCGTGCCTCTC 59.331 50.000 0.00 0.00 46.14 3.20
190 191 1.507141 AAGCAAAACCGTGCCTCTCG 61.507 55.000 0.00 0.00 46.14 4.04
191 192 2.556287 CAAAACCGTGCCTCTCGC 59.444 61.111 0.00 0.00 38.31 5.03
225 226 2.668185 TTTCCGAAAGAGGCACGCCA 62.668 55.000 11.35 0.00 38.92 5.69
333 363 0.602905 CCTTTCCGAAAGAGGCACGT 60.603 55.000 20.43 0.00 41.02 4.49
346 376 4.039357 CACGTCCGTGCCTCTCGT 62.039 66.667 6.91 0.00 39.39 4.18
533 600 1.597027 CGTTTCCAAGAGGCACGGT 60.597 57.895 0.00 0.00 37.54 4.83
766 886 2.494445 CCCAGAGCGCGACACATA 59.506 61.111 12.10 0.00 0.00 2.29
784 904 2.101770 GCAAATGGCTGAGAGCGC 59.898 61.111 0.00 0.00 43.62 5.92
785 905 2.402388 CAAATGGCTGAGAGCGCG 59.598 61.111 0.00 0.00 43.62 6.86
786 906 3.503363 AAATGGCTGAGAGCGCGC 61.503 61.111 26.66 26.66 43.62 6.86
792 912 3.485431 CTGAGAGCGCGCCAAGTG 61.485 66.667 30.33 12.20 0.00 3.16
803 923 3.197790 CCAAGTGGCGCTGATCCG 61.198 66.667 7.64 0.00 0.00 4.18
804 924 2.434884 CAAGTGGCGCTGATCCGT 60.435 61.111 7.64 0.00 0.00 4.69
805 925 2.434884 AAGTGGCGCTGATCCGTG 60.435 61.111 7.64 0.00 0.00 4.94
813 933 4.473520 CTGATCCGTGCGGGGCTT 62.474 66.667 10.94 0.00 36.01 4.35
814 934 4.467084 TGATCCGTGCGGGGCTTC 62.467 66.667 10.94 4.26 36.01 3.86
834 954 2.311124 CGAAGGAGGGCTCGTTAATT 57.689 50.000 0.00 0.00 37.75 1.40
835 955 3.447918 CGAAGGAGGGCTCGTTAATTA 57.552 47.619 0.00 0.00 37.75 1.40
836 956 3.381949 CGAAGGAGGGCTCGTTAATTAG 58.618 50.000 0.00 0.00 37.75 1.73
837 957 3.181478 CGAAGGAGGGCTCGTTAATTAGT 60.181 47.826 0.00 0.00 37.75 2.24
838 958 4.679905 CGAAGGAGGGCTCGTTAATTAGTT 60.680 45.833 0.00 0.00 37.75 2.24
839 959 4.138487 AGGAGGGCTCGTTAATTAGTTG 57.862 45.455 0.00 0.00 0.00 3.16
840 960 2.612672 GGAGGGCTCGTTAATTAGTTGC 59.387 50.000 0.00 0.00 0.00 4.17
841 961 3.532542 GAGGGCTCGTTAATTAGTTGCT 58.467 45.455 0.00 0.00 0.00 3.91
842 962 3.532542 AGGGCTCGTTAATTAGTTGCTC 58.467 45.455 0.00 0.00 0.00 4.26
843 963 2.612672 GGGCTCGTTAATTAGTTGCTCC 59.387 50.000 0.00 0.00 0.00 4.70
1039 1190 3.052262 TCCATCTCTCACTCTTCCTCCAT 60.052 47.826 0.00 0.00 0.00 3.41
1720 1877 1.451927 GAGGGCAACATCCGCATCA 60.452 57.895 0.00 0.00 42.94 3.07
1968 2125 2.360852 GGTCTCACGGACGAGGGA 60.361 66.667 0.00 0.00 45.35 4.20
1983 2140 3.138653 ACGAGGGACTGAGGTACTATGAT 59.861 47.826 0.00 0.00 37.80 2.45
1994 2151 2.639839 GGTACTATGATGCCATGAGGGT 59.360 50.000 0.00 0.00 39.65 4.34
2004 2167 2.284625 ATGAGGGTGGAGCACGGA 60.285 61.111 0.00 0.00 34.83 4.69
2041 2204 1.743391 CACTACGGGTGTGTGGTCA 59.257 57.895 3.17 0.00 40.79 4.02
2046 2209 1.153046 CGGGTGTGTGGTCAACCTT 60.153 57.895 0.10 0.00 42.51 3.50
2090 2253 4.643387 GGCCTTGAGCGTGGTGGT 62.643 66.667 0.00 0.00 45.17 4.16
2268 2431 1.376683 CGCTGTCGGGAAATGGGAA 60.377 57.895 0.00 0.00 0.00 3.97
2310 2473 0.837272 TGATGAAATCCCGGGGAGTC 59.163 55.000 23.50 20.10 44.73 3.36
2378 2541 1.618343 TGAGTTTGTCTGCGGAGATCA 59.382 47.619 10.72 6.49 0.00 2.92
2486 2661 1.527034 GCACTGGAATGCAGAAGACA 58.473 50.000 9.20 0.00 45.39 3.41
2494 2714 3.332919 GAATGCAGAAGACAGAAGCTGA 58.667 45.455 0.82 0.00 35.18 4.26
2505 2725 1.532437 CAGAAGCTGATGTTGTTGCGA 59.468 47.619 0.00 0.00 32.44 5.10
2514 2734 1.278637 GTTGTTGCGACTCCCGTTG 59.721 57.895 5.50 0.00 41.15 4.10
2543 2781 3.003173 TCGGGAAGAGGCACCCAG 61.003 66.667 0.00 0.00 45.83 4.45
2544 2782 3.322466 CGGGAAGAGGCACCCAGT 61.322 66.667 0.00 0.00 45.83 4.00
2586 2825 5.435291 ACAGGTGATGAGATGGATCTTTTC 58.565 41.667 0.00 0.00 37.25 2.29
2612 2851 6.555812 TCGACAGATGATAAGTATTAGCGT 57.444 37.500 0.00 0.00 40.47 5.07
2613 2852 7.662604 TCGACAGATGATAAGTATTAGCGTA 57.337 36.000 0.00 0.00 40.47 4.42
2614 2853 8.091385 TCGACAGATGATAAGTATTAGCGTAA 57.909 34.615 0.00 0.00 40.47 3.18
2615 2854 8.562052 TCGACAGATGATAAGTATTAGCGTAAA 58.438 33.333 0.00 0.00 40.47 2.01
2616 2855 8.841822 CGACAGATGATAAGTATTAGCGTAAAG 58.158 37.037 0.00 0.00 40.47 1.85
2617 2856 9.130312 GACAGATGATAAGTATTAGCGTAAAGG 57.870 37.037 0.00 0.00 40.47 3.11
2618 2857 8.639761 ACAGATGATAAGTATTAGCGTAAAGGT 58.360 33.333 0.00 0.00 40.47 3.50
2619 2858 8.916654 CAGATGATAAGTATTAGCGTAAAGGTG 58.083 37.037 0.00 0.00 40.47 4.00
2622 2861 8.236585 TGATAAGTATTAGCGTAAAGGTGGTA 57.763 34.615 0.00 0.00 40.47 3.25
2660 2899 1.493950 GCGATGATGTTGCCCTCGAG 61.494 60.000 5.13 5.13 0.00 4.04
2667 2906 1.788229 TGTTGCCCTCGAGGATATCA 58.212 50.000 33.39 21.19 38.24 2.15
2673 2912 2.741228 GCCCTCGAGGATATCATCATGC 60.741 54.545 33.39 18.63 38.24 4.06
2679 2918 3.055602 CGAGGATATCATCATGCCCTTCA 60.056 47.826 16.93 0.00 0.00 3.02
2845 3084 2.571212 TCGCATTGTTCTTGTCAAGGT 58.429 42.857 12.66 0.00 0.00 3.50
2891 3130 2.091610 CCACCTCACTCCTCTGGATCTA 60.092 54.545 0.00 0.00 0.00 1.98
2930 3169 5.086104 AGGCAATTGACAGTATTAGACGT 57.914 39.130 15.18 0.00 0.00 4.34
2986 3225 6.109359 CCGGTGGGAAATGCAAAATTAATTA 58.891 36.000 0.01 0.00 34.06 1.40
3064 3303 2.558554 TTTGCTACCGCTCTCCGCTC 62.559 60.000 0.00 0.00 36.97 5.03
3090 3329 1.616159 GCTTTGGTTTGAGTGGGCTA 58.384 50.000 0.00 0.00 0.00 3.93
3148 3387 4.371786 TGCACTGACGATGATAGAAATCC 58.628 43.478 0.00 0.00 0.00 3.01
3370 3609 5.565592 TTTGAGCATATTGAGCAATTCGT 57.434 34.783 0.52 0.00 32.50 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.364002 CCGTGTTCCCAGATTGGTTTTT 59.636 45.455 0.00 0.00 35.17 1.94
23 24 1.960689 CCGTGTTCCCAGATTGGTTTT 59.039 47.619 0.00 0.00 35.17 2.43
24 25 1.616159 CCGTGTTCCCAGATTGGTTT 58.384 50.000 0.00 0.00 35.17 3.27
25 26 0.251165 CCCGTGTTCCCAGATTGGTT 60.251 55.000 0.00 0.00 35.17 3.67
26 27 1.378762 CCCGTGTTCCCAGATTGGT 59.621 57.895 0.00 0.00 35.17 3.67
27 28 0.251165 AACCCGTGTTCCCAGATTGG 60.251 55.000 0.00 0.00 37.25 3.16
28 29 1.616159 AAACCCGTGTTCCCAGATTG 58.384 50.000 0.00 0.00 32.15 2.67
29 30 2.375014 AAAACCCGTGTTCCCAGATT 57.625 45.000 0.00 0.00 32.15 2.40
30 31 2.375014 AAAAACCCGTGTTCCCAGAT 57.625 45.000 0.00 0.00 32.15 2.90
31 32 3.907458 AAAAACCCGTGTTCCCAGA 57.093 47.368 0.00 0.00 32.15 3.86
54 55 1.269569 GGGTGTGCCTTTTTCGGAAAG 60.270 52.381 3.09 5.53 34.45 2.62
55 56 0.747852 GGGTGTGCCTTTTTCGGAAA 59.252 50.000 0.00 0.00 34.45 3.13
56 57 1.448922 CGGGTGTGCCTTTTTCGGAA 61.449 55.000 0.00 0.00 34.45 4.30
57 58 1.894756 CGGGTGTGCCTTTTTCGGA 60.895 57.895 0.00 0.00 34.45 4.55
58 59 2.190841 ACGGGTGTGCCTTTTTCGG 61.191 57.895 0.00 0.00 34.45 4.30
59 60 1.008995 CACGGGTGTGCCTTTTTCG 60.009 57.895 0.00 0.00 39.67 3.46
69 70 3.991051 CGTCAGAGGCACGGGTGT 61.991 66.667 0.25 0.00 33.46 4.16
70 71 2.709125 TTTCGTCAGAGGCACGGGTG 62.709 60.000 0.00 0.00 37.85 4.61
71 72 1.827399 ATTTCGTCAGAGGCACGGGT 61.827 55.000 0.00 0.00 37.85 5.28
72 73 1.079127 ATTTCGTCAGAGGCACGGG 60.079 57.895 0.00 0.00 37.85 5.28
73 74 0.389817 TGATTTCGTCAGAGGCACGG 60.390 55.000 0.00 0.00 37.85 4.94
74 75 0.716108 GTGATTTCGTCAGAGGCACG 59.284 55.000 0.00 0.00 37.56 5.34
75 76 1.795768 TGTGATTTCGTCAGAGGCAC 58.204 50.000 0.00 0.00 37.56 5.01
76 77 2.542020 TTGTGATTTCGTCAGAGGCA 57.458 45.000 0.00 0.00 37.56 4.75
77 78 2.029728 CGATTGTGATTTCGTCAGAGGC 59.970 50.000 0.00 0.00 37.56 4.70
78 79 3.254060 ACGATTGTGATTTCGTCAGAGG 58.746 45.455 0.00 0.00 44.72 3.69
115 116 8.766000 AAAGGATAAAAACACGTTTTCTGTTT 57.234 26.923 8.27 0.00 42.41 2.83
116 117 8.248253 AGAAAGGATAAAAACACGTTTTCTGTT 58.752 29.630 8.27 0.00 41.45 3.16
117 118 7.700656 CAGAAAGGATAAAAACACGTTTTCTGT 59.299 33.333 17.60 0.00 41.45 3.41
118 119 7.913297 TCAGAAAGGATAAAAACACGTTTTCTG 59.087 33.333 18.91 18.91 41.45 3.02
119 120 7.992008 TCAGAAAGGATAAAAACACGTTTTCT 58.008 30.769 8.27 0.00 41.45 2.52
120 121 8.623310 TTCAGAAAGGATAAAAACACGTTTTC 57.377 30.769 8.27 0.00 41.45 2.29
121 122 8.989653 TTTCAGAAAGGATAAAAACACGTTTT 57.010 26.923 2.06 2.06 43.88 2.43
122 123 8.989653 TTTTCAGAAAGGATAAAAACACGTTT 57.010 26.923 0.00 0.00 0.00 3.60
123 124 8.989653 TTTTTCAGAAAGGATAAAAACACGTT 57.010 26.923 0.00 0.00 0.00 3.99
124 125 8.463607 TCTTTTTCAGAAAGGATAAAAACACGT 58.536 29.630 0.00 0.00 30.15 4.49
125 126 8.743099 GTCTTTTTCAGAAAGGATAAAAACACG 58.257 33.333 0.00 0.00 34.03 4.49
126 127 9.581099 TGTCTTTTTCAGAAAGGATAAAAACAC 57.419 29.630 0.00 0.00 34.03 3.32
127 128 9.581099 GTGTCTTTTTCAGAAAGGATAAAAACA 57.419 29.630 0.00 0.00 34.03 2.83
128 129 8.743099 CGTGTCTTTTTCAGAAAGGATAAAAAC 58.257 33.333 0.00 0.00 34.03 2.43
129 130 7.434013 GCGTGTCTTTTTCAGAAAGGATAAAAA 59.566 33.333 0.00 0.00 34.03 1.94
130 131 6.915843 GCGTGTCTTTTTCAGAAAGGATAAAA 59.084 34.615 0.00 0.00 34.03 1.52
131 132 6.435428 GCGTGTCTTTTTCAGAAAGGATAAA 58.565 36.000 0.00 0.00 34.03 1.40
132 133 5.048991 GGCGTGTCTTTTTCAGAAAGGATAA 60.049 40.000 0.00 0.00 34.03 1.75
133 134 4.454504 GGCGTGTCTTTTTCAGAAAGGATA 59.545 41.667 0.00 0.00 34.03 2.59
134 135 3.253432 GGCGTGTCTTTTTCAGAAAGGAT 59.747 43.478 0.00 0.00 34.03 3.24
135 136 2.616842 GGCGTGTCTTTTTCAGAAAGGA 59.383 45.455 0.00 0.00 31.28 3.36
136 137 2.287608 GGGCGTGTCTTTTTCAGAAAGG 60.288 50.000 0.00 0.00 31.28 3.11
137 138 2.602217 CGGGCGTGTCTTTTTCAGAAAG 60.602 50.000 0.00 0.00 31.28 2.62
138 139 1.332375 CGGGCGTGTCTTTTTCAGAAA 59.668 47.619 0.00 0.00 31.28 2.52
139 140 0.941542 CGGGCGTGTCTTTTTCAGAA 59.058 50.000 0.00 0.00 31.28 3.02
140 141 0.179067 ACGGGCGTGTCTTTTTCAGA 60.179 50.000 0.00 0.00 0.00 3.27
141 142 0.041312 CACGGGCGTGTCTTTTTCAG 60.041 55.000 0.00 0.00 40.91 3.02
142 143 2.018544 CACGGGCGTGTCTTTTTCA 58.981 52.632 0.00 0.00 40.91 2.69
143 144 1.370051 GCACGGGCGTGTCTTTTTC 60.370 57.895 0.00 0.00 46.90 2.29
144 145 2.719354 GCACGGGCGTGTCTTTTT 59.281 55.556 0.00 0.00 46.90 1.94
145 146 3.284449 GGCACGGGCGTGTCTTTT 61.284 61.111 2.17 0.00 46.17 2.27
154 155 3.876589 TTTCACGAGAGGCACGGGC 62.877 63.158 0.00 0.00 40.13 6.13
155 156 1.738099 CTTTCACGAGAGGCACGGG 60.738 63.158 0.00 0.00 35.35 5.28
156 157 2.383527 GCTTTCACGAGAGGCACGG 61.384 63.158 0.00 0.00 34.93 4.94
157 158 1.221466 TTGCTTTCACGAGAGGCACG 61.221 55.000 10.78 0.00 35.28 5.34
158 159 0.944386 TTTGCTTTCACGAGAGGCAC 59.056 50.000 10.78 0.00 35.28 5.01
159 160 1.333619 GTTTTGCTTTCACGAGAGGCA 59.666 47.619 8.05 8.05 34.29 4.75
160 161 1.335051 GGTTTTGCTTTCACGAGAGGC 60.335 52.381 0.00 0.00 0.00 4.70
161 162 1.069906 CGGTTTTGCTTTCACGAGAGG 60.070 52.381 0.00 0.00 0.00 3.69
162 163 1.597663 ACGGTTTTGCTTTCACGAGAG 59.402 47.619 0.00 0.00 0.00 3.20
163 164 1.329292 CACGGTTTTGCTTTCACGAGA 59.671 47.619 0.00 0.00 0.00 4.04
164 165 1.741993 CACGGTTTTGCTTTCACGAG 58.258 50.000 0.00 0.00 0.00 4.18
165 166 0.248296 GCACGGTTTTGCTTTCACGA 60.248 50.000 0.00 0.00 39.59 4.35
166 167 1.206115 GGCACGGTTTTGCTTTCACG 61.206 55.000 0.00 0.00 42.56 4.35
167 168 0.102300 AGGCACGGTTTTGCTTTCAC 59.898 50.000 0.00 0.00 42.56 3.18
168 169 0.383949 GAGGCACGGTTTTGCTTTCA 59.616 50.000 0.00 0.00 42.56 2.69
169 170 0.668535 AGAGGCACGGTTTTGCTTTC 59.331 50.000 0.00 0.00 42.56 2.62
170 171 0.668535 GAGAGGCACGGTTTTGCTTT 59.331 50.000 0.00 0.00 42.56 3.51
171 172 1.507141 CGAGAGGCACGGTTTTGCTT 61.507 55.000 0.00 0.00 42.56 3.91
172 173 1.961277 CGAGAGGCACGGTTTTGCT 60.961 57.895 0.00 0.00 42.56 3.91
173 174 2.556287 CGAGAGGCACGGTTTTGC 59.444 61.111 0.00 0.00 42.18 3.68
174 175 2.556287 GCGAGAGGCACGGTTTTG 59.444 61.111 0.00 0.00 42.87 2.44
175 176 3.041940 CGCGAGAGGCACGGTTTT 61.042 61.111 0.00 0.00 43.84 2.43
176 177 3.986006 TCGCGAGAGGCACGGTTT 61.986 61.111 3.71 0.00 43.84 3.27
225 226 1.748403 TGCTTTCGTGAGAGGCACT 59.252 52.632 0.00 0.00 45.49 4.40
257 258 3.022287 CACGGTTGTGCTTTCGCT 58.978 55.556 0.00 0.00 39.67 4.93
333 363 1.289066 CTTTCACGAGAGGCACGGA 59.711 57.895 0.00 0.00 34.93 4.69
459 498 1.452145 GAGGCACGGTTTTGCTTCCA 61.452 55.000 0.00 0.00 41.54 3.53
533 600 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
561 628 1.259507 CGGTTTTGTTTTCGCGAGAGA 59.740 47.619 9.59 0.00 43.69 3.10
654 743 2.845363 GGTTTTCTACCGGTCTTCCA 57.155 50.000 12.40 0.00 37.12 3.53
702 806 2.530700 CGCGTTTTCGGCTTTTTAAACA 59.469 40.909 0.00 0.00 44.29 2.83
786 906 3.197790 CGGATCAGCGCCACTTGG 61.198 66.667 2.29 0.00 38.53 3.61
787 907 2.434884 ACGGATCAGCGCCACTTG 60.435 61.111 2.29 0.00 0.00 3.16
788 908 2.434884 CACGGATCAGCGCCACTT 60.435 61.111 2.29 0.00 0.00 3.16
796 916 4.473520 AAGCCCCGCACGGATCAG 62.474 66.667 11.42 0.00 37.50 2.90
797 917 4.467084 GAAGCCCCGCACGGATCA 62.467 66.667 11.42 0.00 37.50 2.92
807 927 3.798511 CCCTCCTTCGGAAGCCCC 61.799 72.222 12.29 0.00 0.00 5.80
808 928 4.491409 GCCCTCCTTCGGAAGCCC 62.491 72.222 12.29 0.00 0.00 5.19
809 929 3.393149 GAGCCCTCCTTCGGAAGCC 62.393 68.421 12.29 0.00 33.20 4.35
810 930 2.188207 GAGCCCTCCTTCGGAAGC 59.812 66.667 12.29 1.57 33.01 3.86
811 931 1.889530 AACGAGCCCTCCTTCGGAAG 61.890 60.000 10.82 10.82 0.00 3.46
812 932 0.612732 TAACGAGCCCTCCTTCGGAA 60.613 55.000 0.00 0.00 0.00 4.30
813 933 0.612732 TTAACGAGCCCTCCTTCGGA 60.613 55.000 0.00 0.00 0.00 4.55
814 934 0.464452 ATTAACGAGCCCTCCTTCGG 59.536 55.000 0.00 0.00 0.00 4.30
815 935 2.311124 AATTAACGAGCCCTCCTTCG 57.689 50.000 0.00 0.00 0.00 3.79
816 936 4.403585 ACTAATTAACGAGCCCTCCTTC 57.596 45.455 0.00 0.00 0.00 3.46
817 937 4.514401 CAACTAATTAACGAGCCCTCCTT 58.486 43.478 0.00 0.00 0.00 3.36
818 938 3.681874 GCAACTAATTAACGAGCCCTCCT 60.682 47.826 0.00 0.00 0.00 3.69
819 939 2.612672 GCAACTAATTAACGAGCCCTCC 59.387 50.000 0.00 0.00 0.00 4.30
820 940 3.532542 AGCAACTAATTAACGAGCCCTC 58.467 45.455 0.00 0.00 0.00 4.30
821 941 3.532542 GAGCAACTAATTAACGAGCCCT 58.467 45.455 0.00 0.00 0.00 5.19
822 942 2.612672 GGAGCAACTAATTAACGAGCCC 59.387 50.000 0.00 0.00 0.00 5.19
823 943 2.612672 GGGAGCAACTAATTAACGAGCC 59.387 50.000 0.00 0.00 0.00 4.70
824 944 3.532542 AGGGAGCAACTAATTAACGAGC 58.467 45.455 0.00 0.00 0.00 5.03
825 945 5.420409 AGAAGGGAGCAACTAATTAACGAG 58.580 41.667 0.00 0.00 0.00 4.18
826 946 5.416271 AGAAGGGAGCAACTAATTAACGA 57.584 39.130 0.00 0.00 0.00 3.85
827 947 7.605410 TTTAGAAGGGAGCAACTAATTAACG 57.395 36.000 0.00 0.00 0.00 3.18
828 948 8.242053 GGTTTTAGAAGGGAGCAACTAATTAAC 58.758 37.037 0.00 0.00 0.00 2.01
829 949 7.395206 GGGTTTTAGAAGGGAGCAACTAATTAA 59.605 37.037 0.00 0.00 0.00 1.40
830 950 6.888088 GGGTTTTAGAAGGGAGCAACTAATTA 59.112 38.462 0.00 0.00 0.00 1.40
831 951 5.715279 GGGTTTTAGAAGGGAGCAACTAATT 59.285 40.000 0.00 0.00 0.00 1.40
832 952 5.015284 AGGGTTTTAGAAGGGAGCAACTAAT 59.985 40.000 0.00 0.00 0.00 1.73
833 953 4.352893 AGGGTTTTAGAAGGGAGCAACTAA 59.647 41.667 0.00 0.00 0.00 2.24
834 954 3.914435 AGGGTTTTAGAAGGGAGCAACTA 59.086 43.478 0.00 0.00 0.00 2.24
835 955 2.716969 AGGGTTTTAGAAGGGAGCAACT 59.283 45.455 0.00 0.00 0.00 3.16
836 956 3.082548 GAGGGTTTTAGAAGGGAGCAAC 58.917 50.000 0.00 0.00 0.00 4.17
837 957 2.986728 AGAGGGTTTTAGAAGGGAGCAA 59.013 45.455 0.00 0.00 0.00 3.91
838 958 2.632537 AGAGGGTTTTAGAAGGGAGCA 58.367 47.619 0.00 0.00 0.00 4.26
839 959 3.722908 AAGAGGGTTTTAGAAGGGAGC 57.277 47.619 0.00 0.00 0.00 4.70
1720 1877 2.224523 ACATGTCCATCAACGAGTTGGT 60.225 45.455 14.99 6.02 40.78 3.67
1968 2125 4.226384 TCATGGCATCATAGTACCTCAGT 58.774 43.478 0.00 0.00 31.33 3.41
1983 2140 2.934932 TGCTCCACCCTCATGGCA 60.935 61.111 0.00 0.00 39.85 4.92
1994 2151 2.125552 CTGCGATTCCGTGCTCCA 60.126 61.111 0.00 0.00 38.24 3.86
2004 2167 1.068753 CTCCATCCTCGCTGCGATT 59.931 57.895 26.15 10.67 34.61 3.34
2070 2233 4.021925 ACCACGCTCAAGGCCTCC 62.022 66.667 5.23 0.00 37.74 4.30
2077 2240 2.110213 GGTCACCACCACGCTCAA 59.890 61.111 0.00 0.00 43.17 3.02
2157 2320 2.994995 TCGGCCATGTCCACGTCT 60.995 61.111 2.24 0.00 0.00 4.18
2187 2350 1.102222 GGTCCTGCTCGACGAGGTAT 61.102 60.000 25.31 0.00 33.30 2.73
2378 2541 2.898738 CAGCCTGCGGATGAGACT 59.101 61.111 6.97 0.00 42.34 3.24
2486 2661 1.532868 GTCGCAACAACATCAGCTTCT 59.467 47.619 0.00 0.00 0.00 2.85
2494 2714 0.534203 AACGGGAGTCGCAACAACAT 60.534 50.000 8.06 0.00 46.69 2.71
2514 2734 1.476891 TCTTCCCGAGACTGTACATGC 59.523 52.381 0.00 0.00 0.00 4.06
2543 2781 9.894783 CACCTGTATCTGTATTACTGTACATAC 57.105 37.037 0.00 0.00 34.33 2.39
2544 2782 9.856162 TCACCTGTATCTGTATTACTGTACATA 57.144 33.333 0.00 0.00 34.33 2.29
2586 2825 6.470556 CGCTAATACTTATCATCTGTCGATGG 59.529 42.308 0.00 0.00 45.66 3.51
2588 2827 7.147143 ACGCTAATACTTATCATCTGTCGAT 57.853 36.000 0.00 0.00 0.00 3.59
2589 2828 6.555812 ACGCTAATACTTATCATCTGTCGA 57.444 37.500 0.00 0.00 0.00 4.20
2590 2829 8.723777 TTTACGCTAATACTTATCATCTGTCG 57.276 34.615 0.00 0.00 0.00 4.35
2591 2830 9.130312 CCTTTACGCTAATACTTATCATCTGTC 57.870 37.037 0.00 0.00 0.00 3.51
2592 2831 8.639761 ACCTTTACGCTAATACTTATCATCTGT 58.360 33.333 0.00 0.00 0.00 3.41
2593 2832 8.916654 CACCTTTACGCTAATACTTATCATCTG 58.083 37.037 0.00 0.00 0.00 2.90
2594 2833 8.088981 CCACCTTTACGCTAATACTTATCATCT 58.911 37.037 0.00 0.00 0.00 2.90
2595 2834 7.871463 ACCACCTTTACGCTAATACTTATCATC 59.129 37.037 0.00 0.00 0.00 2.92
2596 2835 7.732996 ACCACCTTTACGCTAATACTTATCAT 58.267 34.615 0.00 0.00 0.00 2.45
2597 2836 7.116075 ACCACCTTTACGCTAATACTTATCA 57.884 36.000 0.00 0.00 0.00 2.15
2598 2837 9.702494 ATTACCACCTTTACGCTAATACTTATC 57.298 33.333 0.00 0.00 0.00 1.75
2599 2838 9.485206 CATTACCACCTTTACGCTAATACTTAT 57.515 33.333 0.00 0.00 0.00 1.73
2600 2839 8.477256 ACATTACCACCTTTACGCTAATACTTA 58.523 33.333 0.00 0.00 0.00 2.24
2601 2840 7.279313 CACATTACCACCTTTACGCTAATACTT 59.721 37.037 0.00 0.00 0.00 2.24
2602 2841 6.759827 CACATTACCACCTTTACGCTAATACT 59.240 38.462 0.00 0.00 0.00 2.12
2603 2842 6.018507 CCACATTACCACCTTTACGCTAATAC 60.019 42.308 0.00 0.00 0.00 1.89
2604 2843 6.050432 CCACATTACCACCTTTACGCTAATA 58.950 40.000 0.00 0.00 0.00 0.98
2605 2844 4.879545 CCACATTACCACCTTTACGCTAAT 59.120 41.667 0.00 0.00 0.00 1.73
2606 2845 4.255301 CCACATTACCACCTTTACGCTAA 58.745 43.478 0.00 0.00 0.00 3.09
2607 2846 3.864243 CCACATTACCACCTTTACGCTA 58.136 45.455 0.00 0.00 0.00 4.26
2608 2847 2.706890 CCACATTACCACCTTTACGCT 58.293 47.619 0.00 0.00 0.00 5.07
2609 2848 1.131693 GCCACATTACCACCTTTACGC 59.868 52.381 0.00 0.00 0.00 4.42
2610 2849 2.160813 GTGCCACATTACCACCTTTACG 59.839 50.000 0.00 0.00 0.00 3.18
2611 2850 2.490509 GGTGCCACATTACCACCTTTAC 59.509 50.000 0.00 0.00 44.32 2.01
2612 2851 2.555670 GGGTGCCACATTACCACCTTTA 60.556 50.000 8.71 0.00 46.35 1.85
2613 2852 1.627864 GGTGCCACATTACCACCTTT 58.372 50.000 0.00 0.00 44.32 3.11
2614 2853 0.251608 GGGTGCCACATTACCACCTT 60.252 55.000 8.71 0.00 46.35 3.50
2615 2854 1.382629 GGGTGCCACATTACCACCT 59.617 57.895 8.71 0.00 46.35 4.00
2616 2855 0.324275 ATGGGTGCCACATTACCACC 60.324 55.000 0.00 0.54 46.40 4.61
2617 2856 1.476488 GAATGGGTGCCACATTACCAC 59.524 52.381 0.00 0.00 38.57 4.16
2618 2857 1.846007 GAATGGGTGCCACATTACCA 58.154 50.000 0.00 0.00 38.57 3.25
2619 2858 0.738389 CGAATGGGTGCCACATTACC 59.262 55.000 0.00 0.00 38.57 2.85
2622 2861 1.304381 AGCGAATGGGTGCCACATT 60.304 52.632 0.00 2.72 40.98 2.71
2660 2899 4.008330 CAGTGAAGGGCATGATGATATCC 58.992 47.826 0.00 0.00 0.00 2.59
2667 2906 1.693034 TGGCAGTGAAGGGCATGAT 59.307 52.632 0.00 0.00 35.74 2.45
2673 2912 0.890683 GTTTGGATGGCAGTGAAGGG 59.109 55.000 0.00 0.00 0.00 3.95
2679 2918 2.290960 GGAAGGTAGTTTGGATGGCAGT 60.291 50.000 0.00 0.00 0.00 4.40
2845 3084 4.716784 AGATTGTTATAGCAGTGAGGACCA 59.283 41.667 0.00 0.00 0.00 4.02
2891 3130 0.898320 CCTTGATGACCTCGACTGGT 59.102 55.000 0.00 0.00 44.10 4.00
2930 3169 0.550914 ATCCCGCCCAAAGATAAGCA 59.449 50.000 0.00 0.00 0.00 3.91
2966 3205 8.257306 GTCTCCTAATTAATTTTGCATTTCCCA 58.743 33.333 5.91 0.00 0.00 4.37
2986 3225 2.031163 GCTTGCACACCGTCTCCT 59.969 61.111 0.00 0.00 0.00 3.69
3064 3303 0.454957 CTCAAACCAAAGCCATCGCG 60.455 55.000 0.00 0.00 41.18 5.87
3090 3329 3.506398 CAATCCAAGGTTTAGTGGGGTT 58.494 45.455 0.00 0.00 35.46 4.11
3148 3387 2.256461 GAGTGGCAGCCGCAAAAG 59.744 61.111 27.03 0.00 41.24 2.27
3186 3425 0.619255 TCCCAGAAAGTGGCCCGATA 60.619 55.000 0.00 0.00 46.45 2.92
3370 3609 0.693049 GAGCTTCTCCCAAAGGGTGA 59.307 55.000 1.36 2.16 44.74 4.02



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.