Multiple sequence alignment - TraesCS6B01G358200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G358200 chr6B 100.000 2522 0 0 1 2522 626464046 626461525 0.000000e+00 4658
1 TraesCS6B01G358200 chr6B 95.872 751 26 4 4 750 67946152 67945403 0.000000e+00 1210
2 TraesCS6B01G358200 chr6B 95.861 749 28 2 4 750 179996120 179995373 0.000000e+00 1208
3 TraesCS6B01G358200 chr6B 89.162 895 65 16 745 1614 626808000 626808887 0.000000e+00 1086
4 TraesCS6B01G358200 chr6B 88.917 794 57 13 846 1614 626819105 626819892 0.000000e+00 950
5 TraesCS6B01G358200 chr6B 91.001 689 57 3 850 1535 626593541 626592855 0.000000e+00 924
6 TraesCS6B01G358200 chr6D 88.261 1133 75 19 742 1831 417888187 417889304 0.000000e+00 1303
7 TraesCS6B01G358200 chr6D 84.797 592 86 4 1900 2490 61019552 61020140 2.160000e-165 592
8 TraesCS6B01G358200 chr2B 96.400 750 23 3 4 750 316103999 316103251 0.000000e+00 1232
9 TraesCS6B01G358200 chr2B 95.750 753 27 3 1 750 169486819 169487569 0.000000e+00 1208
10 TraesCS6B01G358200 chr5B 95.745 752 28 3 4 751 150043766 150043015 0.000000e+00 1208
11 TraesCS6B01G358200 chr1B 95.856 748 28 2 4 748 295769483 295768736 0.000000e+00 1206
12 TraesCS6B01G358200 chr1B 85.210 595 86 2 1901 2493 573579846 573580440 5.960000e-171 610
13 TraesCS6B01G358200 chr1B 84.314 612 94 2 1901 2511 61964690 61965300 4.640000e-167 597
14 TraesCS6B01G358200 chr1B 84.590 597 87 4 1901 2493 520780270 520780865 2.790000e-164 588
15 TraesCS6B01G358200 chr4B 95.269 761 29 5 1 759 662087504 662088259 0.000000e+00 1199
16 TraesCS6B01G358200 chr4A 95.376 757 30 5 1 755 650175245 650175998 0.000000e+00 1199
17 TraesCS6B01G358200 chr4A 95.485 753 28 4 1 750 151958623 151959372 0.000000e+00 1197
18 TraesCS6B01G358200 chr6A 87.032 1095 73 22 748 1793 560133204 560132130 0.000000e+00 1171
19 TraesCS6B01G358200 chr6A 86.948 1065 98 30 742 1792 560544230 560545267 0.000000e+00 1158
20 TraesCS6B01G358200 chr6A 85.685 985 89 29 830 1792 560478832 560479786 0.000000e+00 990
21 TraesCS6B01G358200 chr6A 85.482 985 91 29 830 1792 560407065 560408019 0.000000e+00 979
22 TraesCS6B01G358200 chr6A 92.195 615 40 5 830 1444 560359079 560359685 0.000000e+00 863
23 TraesCS6B01G358200 chr3A 85.902 610 85 1 1901 2509 640842118 640842727 0.000000e+00 649
24 TraesCS6B01G358200 chr1D 84.868 608 90 2 1901 2507 387422383 387422989 1.660000e-171 612
25 TraesCS6B01G358200 chr3D 84.743 603 88 4 1902 2502 390672915 390673515 3.590000e-168 601
26 TraesCS6B01G358200 chr4D 85.816 564 78 2 1932 2494 399731100 399730538 4.640000e-167 597
27 TraesCS6B01G358200 chr3B 84.732 596 88 3 1901 2494 508258623 508259217 6.010000e-166 593


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G358200 chr6B 626461525 626464046 2521 True 4658 4658 100.000 1 2522 1 chr6B.!!$R3 2521
1 TraesCS6B01G358200 chr6B 67945403 67946152 749 True 1210 1210 95.872 4 750 1 chr6B.!!$R1 746
2 TraesCS6B01G358200 chr6B 179995373 179996120 747 True 1208 1208 95.861 4 750 1 chr6B.!!$R2 746
3 TraesCS6B01G358200 chr6B 626808000 626808887 887 False 1086 1086 89.162 745 1614 1 chr6B.!!$F1 869
4 TraesCS6B01G358200 chr6B 626819105 626819892 787 False 950 950 88.917 846 1614 1 chr6B.!!$F2 768
5 TraesCS6B01G358200 chr6B 626592855 626593541 686 True 924 924 91.001 850 1535 1 chr6B.!!$R4 685
6 TraesCS6B01G358200 chr6D 417888187 417889304 1117 False 1303 1303 88.261 742 1831 1 chr6D.!!$F2 1089
7 TraesCS6B01G358200 chr6D 61019552 61020140 588 False 592 592 84.797 1900 2490 1 chr6D.!!$F1 590
8 TraesCS6B01G358200 chr2B 316103251 316103999 748 True 1232 1232 96.400 4 750 1 chr2B.!!$R1 746
9 TraesCS6B01G358200 chr2B 169486819 169487569 750 False 1208 1208 95.750 1 750 1 chr2B.!!$F1 749
10 TraesCS6B01G358200 chr5B 150043015 150043766 751 True 1208 1208 95.745 4 751 1 chr5B.!!$R1 747
11 TraesCS6B01G358200 chr1B 295768736 295769483 747 True 1206 1206 95.856 4 748 1 chr1B.!!$R1 744
12 TraesCS6B01G358200 chr1B 573579846 573580440 594 False 610 610 85.210 1901 2493 1 chr1B.!!$F3 592
13 TraesCS6B01G358200 chr1B 61964690 61965300 610 False 597 597 84.314 1901 2511 1 chr1B.!!$F1 610
14 TraesCS6B01G358200 chr1B 520780270 520780865 595 False 588 588 84.590 1901 2493 1 chr1B.!!$F2 592
15 TraesCS6B01G358200 chr4B 662087504 662088259 755 False 1199 1199 95.269 1 759 1 chr4B.!!$F1 758
16 TraesCS6B01G358200 chr4A 650175245 650175998 753 False 1199 1199 95.376 1 755 1 chr4A.!!$F2 754
17 TraesCS6B01G358200 chr4A 151958623 151959372 749 False 1197 1197 95.485 1 750 1 chr4A.!!$F1 749
18 TraesCS6B01G358200 chr6A 560132130 560133204 1074 True 1171 1171 87.032 748 1793 1 chr6A.!!$R1 1045
19 TraesCS6B01G358200 chr6A 560544230 560545267 1037 False 1158 1158 86.948 742 1792 1 chr6A.!!$F4 1050
20 TraesCS6B01G358200 chr6A 560478832 560479786 954 False 990 990 85.685 830 1792 1 chr6A.!!$F3 962
21 TraesCS6B01G358200 chr6A 560407065 560408019 954 False 979 979 85.482 830 1792 1 chr6A.!!$F2 962
22 TraesCS6B01G358200 chr6A 560359079 560359685 606 False 863 863 92.195 830 1444 1 chr6A.!!$F1 614
23 TraesCS6B01G358200 chr3A 640842118 640842727 609 False 649 649 85.902 1901 2509 1 chr3A.!!$F1 608
24 TraesCS6B01G358200 chr1D 387422383 387422989 606 False 612 612 84.868 1901 2507 1 chr1D.!!$F1 606
25 TraesCS6B01G358200 chr3D 390672915 390673515 600 False 601 601 84.743 1902 2502 1 chr3D.!!$F1 600
26 TraesCS6B01G358200 chr4D 399730538 399731100 562 True 597 597 85.816 1932 2494 1 chr4D.!!$R1 562
27 TraesCS6B01G358200 chr3B 508258623 508259217 594 False 593 593 84.732 1901 2494 1 chr3B.!!$F1 593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
967 1015 0.534412 CTCCATCACCTCGCTGTCTT 59.466 55.0 0.0 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2398 2503 0.320421 CATGGACAACCGAACGACCT 60.32 55.0 0.0 0.0 39.42 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 4.734917 ACGAGATCTTCAAAACTAGACCG 58.265 43.478 0.00 0.00 0.00 4.79
150 155 5.320723 GCATGTTGATATGTTTCGACGAAA 58.679 37.500 18.66 18.66 33.42 3.46
151 156 5.792962 GCATGTTGATATGTTTCGACGAAAA 59.207 36.000 23.59 14.38 33.14 2.29
152 157 6.304445 GCATGTTGATATGTTTCGACGAAAAA 59.696 34.615 23.59 19.43 33.14 1.94
328 336 6.596309 TGTATGAACCATGGCAATTTTACA 57.404 33.333 13.04 9.86 0.00 2.41
457 467 7.415541 GCTGAAACATATCATGGCAACTTTAGA 60.416 37.037 0.00 0.00 37.61 2.10
502 512 9.016623 CATATGCAATAGACATGACAACTTTTG 57.983 33.333 0.00 6.31 28.50 2.44
577 590 1.197721 CATCGCGAGGGATTTAATGGC 59.802 52.381 16.66 0.00 0.00 4.40
583 596 3.243401 GCGAGGGATTTAATGGCGAAAAT 60.243 43.478 0.00 0.00 0.00 1.82
765 778 6.963805 GCGACCCAAAGTCTATATATACGTAC 59.036 42.308 0.00 0.00 43.91 3.67
940 988 2.906389 TCTCCAGCCAACTTGTATCAGT 59.094 45.455 0.00 0.00 0.00 3.41
967 1015 0.534412 CTCCATCACCTCGCTGTCTT 59.466 55.000 0.00 0.00 0.00 3.01
987 1035 3.399952 TCTTCGTCTCCCCCTTTCTAT 57.600 47.619 0.00 0.00 0.00 1.98
990 1038 0.674534 CGTCTCCCCCTTTCTATCCG 59.325 60.000 0.00 0.00 0.00 4.18
1458 1506 3.099619 GATCATGCCGCACACCGTG 62.100 63.158 0.00 0.00 36.51 4.94
1475 1523 4.021925 GTGGGAGAAGGCGCAGGT 62.022 66.667 10.83 0.00 0.00 4.00
1576 1631 4.209538 TGGAAGATTGATGCATACCAAGG 58.790 43.478 0.00 0.00 0.00 3.61
1666 1756 2.180276 GGTGGATCTATATGACCGGCT 58.820 52.381 0.00 0.00 0.00 5.52
1681 1775 2.649034 GCTGAGTCGACCGGTTCA 59.351 61.111 9.42 7.66 0.00 3.18
1682 1776 1.215647 GCTGAGTCGACCGGTTCAT 59.784 57.895 9.42 0.00 0.00 2.57
1731 1828 9.893305 AATTTATGCTTGTTTGTAGAAGTACAC 57.107 29.630 0.00 0.00 38.95 2.90
1758 1855 5.014202 ACACTCTTTCTACTTCCTCTCCTC 58.986 45.833 0.00 0.00 0.00 3.71
1793 1894 9.319143 ACGATCTAAGATTTTTGAGATTGTAGG 57.681 33.333 2.45 0.00 39.98 3.18
1800 1901 7.865820 AGATTTTTGAGATTGTAGGGATGAGA 58.134 34.615 0.00 0.00 0.00 3.27
1801 1902 7.992033 AGATTTTTGAGATTGTAGGGATGAGAG 59.008 37.037 0.00 0.00 0.00 3.20
1803 1904 5.604758 TTGAGATTGTAGGGATGAGAGTG 57.395 43.478 0.00 0.00 0.00 3.51
1804 1905 4.614475 TGAGATTGTAGGGATGAGAGTGT 58.386 43.478 0.00 0.00 0.00 3.55
1810 1913 2.030027 AGGGATGAGAGTGTTGGACA 57.970 50.000 0.00 0.00 0.00 4.02
1817 1920 2.700371 TGAGAGTGTTGGACAGTGATGT 59.300 45.455 0.00 0.00 30.64 3.06
1831 1934 5.730550 ACAGTGATGTACCGTGATATTTGT 58.269 37.500 0.00 0.00 0.00 2.83
1832 1935 5.580691 ACAGTGATGTACCGTGATATTTGTG 59.419 40.000 0.00 0.00 0.00 3.33
1833 1936 5.810074 CAGTGATGTACCGTGATATTTGTGA 59.190 40.000 0.00 0.00 0.00 3.58
1834 1937 6.019559 CAGTGATGTACCGTGATATTTGTGAG 60.020 42.308 0.00 0.00 0.00 3.51
1835 1938 6.040247 GTGATGTACCGTGATATTTGTGAGA 58.960 40.000 0.00 0.00 0.00 3.27
1836 1939 6.533723 GTGATGTACCGTGATATTTGTGAGAA 59.466 38.462 0.00 0.00 0.00 2.87
1837 1940 7.064134 GTGATGTACCGTGATATTTGTGAGAAA 59.936 37.037 0.00 0.00 0.00 2.52
1838 1941 6.715344 TGTACCGTGATATTTGTGAGAAAC 57.285 37.500 0.00 0.00 0.00 2.78
1839 1942 6.460781 TGTACCGTGATATTTGTGAGAAACT 58.539 36.000 0.00 0.00 0.00 2.66
1840 1943 6.932400 TGTACCGTGATATTTGTGAGAAACTT 59.068 34.615 0.00 0.00 0.00 2.66
1841 1944 6.241207 ACCGTGATATTTGTGAGAAACTTG 57.759 37.500 0.00 0.00 0.00 3.16
1842 1945 5.088739 CCGTGATATTTGTGAGAAACTTGC 58.911 41.667 0.00 0.00 0.00 4.01
1843 1946 5.334802 CCGTGATATTTGTGAGAAACTTGCA 60.335 40.000 0.00 0.00 0.00 4.08
1844 1947 5.565259 CGTGATATTTGTGAGAAACTTGCAC 59.435 40.000 0.00 0.00 0.00 4.57
1845 1948 5.565259 GTGATATTTGTGAGAAACTTGCACG 59.435 40.000 0.00 0.00 35.37 5.34
1846 1949 5.238432 TGATATTTGTGAGAAACTTGCACGT 59.762 36.000 0.00 0.00 35.37 4.49
1847 1950 6.425417 TGATATTTGTGAGAAACTTGCACGTA 59.575 34.615 0.00 0.00 35.37 3.57
1848 1951 4.530094 TTTGTGAGAAACTTGCACGTAG 57.470 40.909 0.00 0.00 35.37 3.51
1849 1952 3.446310 TGTGAGAAACTTGCACGTAGA 57.554 42.857 0.00 0.00 35.37 2.59
1850 1953 3.787785 TGTGAGAAACTTGCACGTAGAA 58.212 40.909 0.00 0.00 35.37 2.10
1851 1954 4.185394 TGTGAGAAACTTGCACGTAGAAA 58.815 39.130 0.00 0.00 35.37 2.52
1852 1955 4.632251 TGTGAGAAACTTGCACGTAGAAAA 59.368 37.500 0.00 0.00 35.37 2.29
1853 1956 5.122554 TGTGAGAAACTTGCACGTAGAAAAA 59.877 36.000 0.00 0.00 35.37 1.94
1854 1957 5.451342 GTGAGAAACTTGCACGTAGAAAAAC 59.549 40.000 0.00 0.00 0.00 2.43
1855 1958 5.122554 TGAGAAACTTGCACGTAGAAAAACA 59.877 36.000 0.00 0.00 0.00 2.83
1856 1959 6.131544 AGAAACTTGCACGTAGAAAAACAT 57.868 33.333 0.00 0.00 0.00 2.71
1857 1960 5.971202 AGAAACTTGCACGTAGAAAAACATG 59.029 36.000 0.00 0.00 0.00 3.21
1858 1961 4.893424 ACTTGCACGTAGAAAAACATGT 57.107 36.364 0.00 0.00 0.00 3.21
1859 1962 5.243426 ACTTGCACGTAGAAAAACATGTT 57.757 34.783 4.92 4.92 0.00 2.71
1860 1963 5.646606 ACTTGCACGTAGAAAAACATGTTT 58.353 33.333 18.13 18.13 0.00 2.83
1861 1964 6.096695 ACTTGCACGTAGAAAAACATGTTTT 58.903 32.000 27.01 27.01 43.88 2.43
1879 1982 9.482627 ACATGTTTTTGTTTTCTTACAAACTCA 57.517 25.926 0.00 0.00 45.00 3.41
1882 1985 9.921637 TGTTTTTGTTTTCTTACAAACTCATCT 57.078 25.926 0.00 0.00 45.00 2.90
1972 2075 2.294170 ATTCGTCTCCCCTCCGCCTA 62.294 60.000 0.00 0.00 0.00 3.93
2026 2129 2.891580 CCTAGTGCCTCGGCTTAGATAA 59.108 50.000 9.65 0.00 42.51 1.75
2033 2136 2.231721 CCTCGGCTTAGATAAGTAGGGC 59.768 54.545 1.82 0.00 35.75 5.19
2043 2146 8.205512 GCTTAGATAAGTAGGGCTTTAGTTCTT 58.794 37.037 1.82 0.00 38.57 2.52
2084 2188 2.047179 GGGGCGCTTCTTCTTCGT 60.047 61.111 7.64 0.00 0.00 3.85
2106 2210 3.181440 TGTCAGTCTTCCAGGCTTCAATT 60.181 43.478 0.00 0.00 0.00 2.32
2117 2221 3.688673 CAGGCTTCAATTCTCCTCAAGTC 59.311 47.826 0.00 0.00 0.00 3.01
2153 2257 1.654954 TTAGACAGAGCTCCGGCGTC 61.655 60.000 10.93 12.09 44.37 5.19
2158 2262 2.202756 GAGCTCCGGCGTCGATTT 60.203 61.111 12.93 0.00 44.37 2.17
2198 2303 2.738013 CGAGGTTAGGGTTTCTCGTT 57.262 50.000 0.00 0.00 42.61 3.85
2224 2329 3.555547 CGTATGCAATGACGAGATTTGGA 59.444 43.478 12.33 0.00 41.60 3.53
2255 2360 7.416101 GGTTCTTCAGATTGATTCAAGGATTCC 60.416 40.741 5.21 0.00 0.00 3.01
2328 2433 0.246635 ACTTCCCGGTTGTCATCGAG 59.753 55.000 0.00 0.00 0.00 4.04
2336 2441 2.609491 CGGTTGTCATCGAGAAGGTCAA 60.609 50.000 0.00 0.00 0.00 3.18
2398 2503 3.746889 CATTCTGGCGGCGGCAAA 61.747 61.111 35.24 28.82 42.47 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 4.514545 TCGTCGAAACATATCAACATGC 57.485 40.909 0.00 0.00 0.00 4.06
328 336 7.058023 ACTAAAATTGCCATGATACATGCAT 57.942 32.000 0.00 0.00 33.08 3.96
457 467 7.149973 GCATATGAATTGCCATGATGTTTACT 58.850 34.615 6.97 0.00 33.95 2.24
537 550 6.584184 GCGATGAGATCTTCGAAATTAGATCA 59.416 38.462 21.20 11.79 45.90 2.92
583 596 8.443953 AAACGAAAAATCCAATTGAAAATCCA 57.556 26.923 7.12 0.00 0.00 3.41
711 724 2.425592 CACGTGTGGCAGGAAGGA 59.574 61.111 7.58 0.00 0.00 3.36
909 948 1.549203 TGGCTGGAGATGAAAAAGGC 58.451 50.000 0.00 0.00 0.00 4.35
912 951 3.960102 ACAAGTTGGCTGGAGATGAAAAA 59.040 39.130 7.96 0.00 0.00 1.94
967 1015 2.913603 TAGAAAGGGGGAGACGAAGA 57.086 50.000 0.00 0.00 0.00 2.87
987 1035 2.994995 ACCATGACACGGCTCGGA 60.995 61.111 0.00 0.00 0.00 4.55
990 1038 1.448540 CCTCACCATGACACGGCTC 60.449 63.158 0.00 0.00 0.00 4.70
1026 1074 1.303155 GTTGAGCTTGAGCCAGCCT 60.303 57.895 0.00 0.00 41.12 4.58
1035 1083 1.264288 GACCCGTCAAAGTTGAGCTTG 59.736 52.381 0.00 0.00 37.98 4.01
1453 1501 4.003788 CGCCTTCTCCCACACGGT 62.004 66.667 0.00 0.00 0.00 4.83
1458 1506 3.959991 GACCTGCGCCTTCTCCCAC 62.960 68.421 4.18 0.00 0.00 4.61
1475 1523 4.429212 CCACGCCATCCACGTCGA 62.429 66.667 0.00 0.00 42.96 4.20
1576 1631 3.680786 GGCCCTTCCACGGTTTGC 61.681 66.667 0.00 0.00 34.01 3.68
1666 1756 3.812262 TCTATATGAACCGGTCGACTCA 58.188 45.455 16.46 8.66 0.00 3.41
1728 1825 5.834204 AGGAAGTAGAAAGAGTGTACTGTGT 59.166 40.000 0.00 0.00 36.47 3.72
1731 1828 6.127842 GGAGAGGAAGTAGAAAGAGTGTACTG 60.128 46.154 0.00 0.00 36.47 2.74
1758 1855 9.447040 TCAAAAATCTTAGATCGTATAGTGACG 57.553 33.333 0.00 0.00 44.29 4.35
1793 1894 2.300152 TCACTGTCCAACACTCTCATCC 59.700 50.000 0.00 0.00 0.00 3.51
1800 1901 2.288825 CGGTACATCACTGTCCAACACT 60.289 50.000 0.00 0.00 36.79 3.55
1801 1902 2.066262 CGGTACATCACTGTCCAACAC 58.934 52.381 0.00 0.00 36.79 3.32
1803 1904 2.066262 CACGGTACATCACTGTCCAAC 58.934 52.381 0.00 0.00 45.37 3.77
1804 1905 1.964933 TCACGGTACATCACTGTCCAA 59.035 47.619 0.00 0.00 45.37 3.53
1810 1913 5.972935 TCACAAATATCACGGTACATCACT 58.027 37.500 0.00 0.00 0.00 3.41
1817 1920 6.128391 GCAAGTTTCTCACAAATATCACGGTA 60.128 38.462 0.00 0.00 0.00 4.02
1831 1934 5.122554 TGTTTTTCTACGTGCAAGTTTCTCA 59.877 36.000 11.38 0.00 0.00 3.27
1832 1935 5.565695 TGTTTTTCTACGTGCAAGTTTCTC 58.434 37.500 11.38 0.00 0.00 2.87
1833 1936 5.554822 TGTTTTTCTACGTGCAAGTTTCT 57.445 34.783 11.38 0.00 0.00 2.52
1834 1937 5.741982 ACATGTTTTTCTACGTGCAAGTTTC 59.258 36.000 11.38 0.00 38.35 2.78
1835 1938 5.646606 ACATGTTTTTCTACGTGCAAGTTT 58.353 33.333 11.38 0.00 38.35 2.66
1836 1939 5.243426 ACATGTTTTTCTACGTGCAAGTT 57.757 34.783 11.38 0.00 38.35 2.66
1837 1940 4.893424 ACATGTTTTTCTACGTGCAAGT 57.107 36.364 10.83 10.83 38.35 3.16
1838 1941 6.567769 AAAACATGTTTTTCTACGTGCAAG 57.432 33.333 27.01 0.00 39.52 4.01
1839 1942 6.366332 ACAAAAACATGTTTTTCTACGTGCAA 59.634 30.769 35.23 0.00 46.30 4.08
1840 1943 5.864474 ACAAAAACATGTTTTTCTACGTGCA 59.136 32.000 35.23 0.00 46.30 4.57
1841 1944 6.325849 ACAAAAACATGTTTTTCTACGTGC 57.674 33.333 35.23 0.00 46.30 5.34
1891 1994 9.794719 GCTTTCCCTAGTCACCTTAATATATTT 57.205 33.333 2.68 0.00 0.00 1.40
1892 1995 8.383947 GGCTTTCCCTAGTCACCTTAATATATT 58.616 37.037 2.97 2.97 0.00 1.28
1893 1996 7.739904 AGGCTTTCCCTAGTCACCTTAATATAT 59.260 37.037 0.00 0.00 44.08 0.86
1894 1997 7.080353 AGGCTTTCCCTAGTCACCTTAATATA 58.920 38.462 0.00 0.00 44.08 0.86
1895 1998 5.911766 AGGCTTTCCCTAGTCACCTTAATAT 59.088 40.000 0.00 0.00 44.08 1.28
1896 1999 5.286221 AGGCTTTCCCTAGTCACCTTAATA 58.714 41.667 0.00 0.00 44.08 0.98
1897 2000 4.112331 AGGCTTTCCCTAGTCACCTTAAT 58.888 43.478 0.00 0.00 44.08 1.40
1898 2001 3.527937 AGGCTTTCCCTAGTCACCTTAA 58.472 45.455 0.00 0.00 44.08 1.85
1904 2007 2.572104 GGAAGAAGGCTTTCCCTAGTCA 59.428 50.000 4.73 0.00 45.62 3.41
2026 2129 4.327680 CTTGCAAGAACTAAAGCCCTACT 58.672 43.478 22.31 0.00 0.00 2.57
2033 2136 1.200020 CCGCCCTTGCAAGAACTAAAG 59.800 52.381 28.05 8.76 37.32 1.85
2084 2188 1.423584 TGAAGCCTGGAAGACTGACA 58.576 50.000 0.00 0.00 34.07 3.58
2106 2210 0.879765 GACGAACGGACTTGAGGAGA 59.120 55.000 0.00 0.00 0.00 3.71
2153 2257 1.150567 CGAGGAGCTGGCAGAAATCG 61.151 60.000 20.86 16.77 0.00 3.34
2158 2262 2.757508 CTCCGAGGAGCTGGCAGA 60.758 66.667 20.86 0.00 35.31 4.26
2224 2329 6.119240 TGAATCAATCTGAAGAACCTGACT 57.881 37.500 0.00 0.00 0.00 3.41
2255 2360 2.050714 GCCGCAATCATCGCCATG 60.051 61.111 0.00 0.00 0.00 3.66
2274 2379 0.756294 TCAAAGGACCAGCGTTCAGA 59.244 50.000 0.00 0.00 0.00 3.27
2336 2441 0.757188 CTCCCATACCGGAGTCAGCT 60.757 60.000 9.46 0.00 43.94 4.24
2398 2503 0.320421 CATGGACAACCGAACGACCT 60.320 55.000 0.00 0.00 39.42 3.85
2448 2555 5.127491 AGATTCACCGGAAGTACAAAACAA 58.873 37.500 9.46 0.00 36.25 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.