Multiple sequence alignment - TraesCS6B01G358000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G358000 chr6B 100.000 5566 0 0 1 5566 626449475 626455040 0.000000e+00 10279.0
1 TraesCS6B01G358000 chr6B 88.796 357 39 1 1 357 1126841 1126486 2.380000e-118 436.0
2 TraesCS6B01G358000 chr6B 90.123 324 23 6 985 1307 529894809 529895124 4.010000e-111 412.0
3 TraesCS6B01G358000 chr6D 94.377 2561 115 11 2718 5273 417756691 417754155 0.000000e+00 3904.0
4 TraesCS6B01G358000 chr6D 88.270 2353 156 59 355 2662 417759114 417756837 0.000000e+00 2706.0
5 TraesCS6B01G358000 chr6D 92.593 108 8 0 5362 5469 417754021 417753914 7.470000e-34 156.0
6 TraesCS6B01G358000 chr6A 94.730 2353 88 16 2674 5019 560208654 560206331 0.000000e+00 3626.0
7 TraesCS6B01G358000 chr6A 90.614 2035 126 31 660 2670 560210810 560208817 0.000000e+00 2639.0
8 TraesCS6B01G358000 chr6A 89.227 362 35 4 1 360 573823558 573823199 3.060000e-122 449.0
9 TraesCS6B01G358000 chr6A 89.950 199 16 3 5078 5273 560206333 560206136 2.570000e-63 254.0
10 TraesCS6B01G358000 chr6A 81.471 340 32 14 356 667 560211185 560210849 3.330000e-62 250.0
11 TraesCS6B01G358000 chr6A 91.558 154 13 0 5316 5469 560205461 560205308 4.370000e-51 213.0
12 TraesCS6B01G358000 chr6A 97.248 109 1 1 5458 5566 84425674 84425568 3.420000e-42 183.0
13 TraesCS6B01G358000 chr6A 97.248 109 1 1 5458 5566 597245111 597245217 3.420000e-42 183.0
14 TraesCS6B01G358000 chr1D 88.078 411 31 8 985 1393 338064563 338064169 6.530000e-129 472.0
15 TraesCS6B01G358000 chr3D 87.835 411 32 8 985 1393 479953639 479954033 3.040000e-127 466.0
16 TraesCS6B01G358000 chr3D 88.827 358 39 1 1 357 545418455 545418098 6.620000e-119 438.0
17 TraesCS6B01G358000 chr3D 88.611 360 40 1 1 359 134126539 134126898 2.380000e-118 436.0
18 TraesCS6B01G358000 chr4A 86.861 411 36 8 985 1393 723125589 723125983 1.420000e-120 444.0
19 TraesCS6B01G358000 chr4A 84.709 412 39 11 990 1393 712001594 712001989 1.880000e-104 390.0
20 TraesCS6B01G358000 chr4A 97.248 109 1 1 5458 5566 246699486 246699592 3.420000e-42 183.0
21 TraesCS6B01G358000 chr4B 88.736 364 36 2 1 359 18666893 18667256 1.840000e-119 440.0
22 TraesCS6B01G358000 chr4B 97.248 109 1 1 5458 5566 209099039 209099145 3.420000e-42 183.0
23 TraesCS6B01G358000 chr7D 88.827 358 39 1 1 357 397174261 397174618 6.620000e-119 438.0
24 TraesCS6B01G358000 chr7D 88.796 357 40 0 1 357 528484847 528484491 6.620000e-119 438.0
25 TraesCS6B01G358000 chr7D 81.197 234 20 10 3570 3792 2234966 2234746 3.450000e-37 167.0
26 TraesCS6B01G358000 chr7D 81.364 220 18 14 3570 3779 2235506 2235300 2.080000e-34 158.0
27 TraesCS6B01G358000 chr7D 97.059 34 0 1 355 387 457179841 457179808 7.790000e-04 56.5
28 TraesCS6B01G358000 chr7B 88.547 358 39 2 1 357 144668638 144668994 3.080000e-117 433.0
29 TraesCS6B01G358000 chr7B 85.230 413 37 11 989 1393 263733013 263733409 2.410000e-108 403.0
30 TraesCS6B01G358000 chr7B 76.230 122 24 3 355 473 479490289 479490170 6.020000e-05 60.2
31 TraesCS6B01G358000 chr7A 88.366 361 40 2 1 360 591569619 591569978 3.080000e-117 433.0
32 TraesCS6B01G358000 chr7A 97.248 109 1 1 5458 5566 4929172 4929066 3.420000e-42 183.0
33 TraesCS6B01G358000 chr7A 78.903 237 25 13 3570 3792 1841888 1841663 2.700000e-28 137.0
34 TraesCS6B01G358000 chr2B 90.432 324 22 4 985 1307 795472777 795473092 8.620000e-113 418.0
35 TraesCS6B01G358000 chr1A 97.297 111 1 1 5456 5566 94653088 94652980 2.650000e-43 187.0
36 TraesCS6B01G358000 chr1B 97.248 109 1 1 5458 5566 135057159 135057265 3.420000e-42 183.0
37 TraesCS6B01G358000 chr1B 97.248 109 1 1 5458 5566 619202931 619202825 3.420000e-42 183.0
38 TraesCS6B01G358000 chr1B 97.248 109 1 1 5458 5566 668826444 668826550 3.420000e-42 183.0
39 TraesCS6B01G358000 chr3A 78.689 122 20 5 355 473 79267106 79267224 5.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G358000 chr6B 626449475 626455040 5565 False 10279.000000 10279 100.000000 1 5566 1 chr6B.!!$F2 5565
1 TraesCS6B01G358000 chr6D 417753914 417759114 5200 True 2255.333333 3904 91.746667 355 5469 3 chr6D.!!$R1 5114
2 TraesCS6B01G358000 chr6A 560205308 560211185 5877 True 1396.400000 3626 89.664600 356 5469 5 chr6A.!!$R3 5113

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
204 205 0.037590 CGATGTCCCTTTCACCCCAA 59.962 55.0 0.00 0.0 0.00 4.12 F
231 232 0.037975 GCAAGTTTGTGCTGGGGATG 60.038 55.0 0.00 0.0 41.51 3.51 F
240 241 0.189574 TGCTGGGGATGGGTTGAAAA 59.810 50.0 0.00 0.0 0.00 2.29 F
1372 1466 0.393402 TTGCCTTCGAGCATGAGCAT 60.393 50.0 0.00 0.0 43.64 3.79 F
1981 2086 0.256177 GGCAAAACCCCCAAACCAAA 59.744 50.0 0.00 0.0 0.00 3.28 F
2637 2747 0.240945 GGCAACAGTTTGTAGCGCAT 59.759 50.0 11.47 0.0 34.90 4.73 F
4265 4539 0.586802 GAAGGTTCTGCGTTGACACC 59.413 55.0 0.00 0.0 0.00 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1440 0.036732 TGCTCGAAGGCAACAATCCT 59.963 50.0 0.00 0.0 39.43 3.24 R
1368 1462 0.106819 GCAATCAGAGGGACCATGCT 60.107 55.0 0.00 0.0 32.89 3.79 R
1427 1522 0.319211 TTACAGGTGCGTTCCGAGTG 60.319 55.0 0.00 0.0 0.00 3.51 R
2264 2369 0.528017 GCACAGATGTCTGACTCGGA 59.472 55.0 16.41 0.0 46.59 4.55 R
3398 3672 0.325933 TGGTCTCAGCCACAGGATTG 59.674 55.0 0.00 0.0 32.81 2.67 R
4268 4542 0.041090 AAACATTTCCATCCCCGCCT 59.959 50.0 0.00 0.0 0.00 5.52 R
5508 6425 0.110486 TCACTTCAGAAGGTTGCCCC 59.890 55.0 14.90 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.357327 TCGAGACGTGGTTTGGTATG 57.643 50.000 0.00 0.00 0.00 2.39
20 21 1.067425 TCGAGACGTGGTTTGGTATGG 60.067 52.381 0.00 0.00 0.00 2.74
21 22 1.067425 CGAGACGTGGTTTGGTATGGA 60.067 52.381 0.00 0.00 0.00 3.41
22 23 2.344025 GAGACGTGGTTTGGTATGGAC 58.656 52.381 0.00 0.00 0.00 4.02
23 24 1.073177 GACGTGGTTTGGTATGGACG 58.927 55.000 0.00 0.00 0.00 4.79
24 25 0.320946 ACGTGGTTTGGTATGGACGG 60.321 55.000 0.00 0.00 0.00 4.79
25 26 1.641123 CGTGGTTTGGTATGGACGGC 61.641 60.000 0.00 0.00 0.00 5.68
26 27 1.001887 TGGTTTGGTATGGACGGCC 60.002 57.895 0.00 0.00 0.00 6.13
27 28 2.110352 GGTTTGGTATGGACGGCCG 61.110 63.158 26.86 26.86 36.79 6.13
28 29 2.110352 GTTTGGTATGGACGGCCGG 61.110 63.158 31.76 11.88 36.79 6.13
29 30 3.332445 TTTGGTATGGACGGCCGGG 62.332 63.158 31.76 2.28 36.79 5.73
46 47 4.767255 GGGGTGCGCAGTGAGGAG 62.767 72.222 12.22 0.00 0.00 3.69
47 48 4.767255 GGGTGCGCAGTGAGGAGG 62.767 72.222 12.22 0.00 0.00 4.30
60 61 3.231736 GGAGGCGGCCGGAGAATA 61.232 66.667 29.38 0.00 0.00 1.75
61 62 2.340443 GAGGCGGCCGGAGAATAG 59.660 66.667 29.38 0.00 0.00 1.73
62 63 2.444140 AGGCGGCCGGAGAATAGT 60.444 61.111 29.38 0.00 0.00 2.12
63 64 2.280186 GGCGGCCGGAGAATAGTG 60.280 66.667 29.38 0.00 0.00 2.74
64 65 2.280186 GCGGCCGGAGAATAGTGG 60.280 66.667 29.38 0.00 0.00 4.00
65 66 2.280186 CGGCCGGAGAATAGTGGC 60.280 66.667 20.10 0.00 46.82 5.01
67 68 2.280186 GCCGGAGAATAGTGGCGG 60.280 66.667 5.05 0.00 37.81 6.13
68 69 2.280186 CCGGAGAATAGTGGCGGC 60.280 66.667 0.00 0.00 0.00 6.53
69 70 2.658593 CGGAGAATAGTGGCGGCG 60.659 66.667 0.51 0.51 0.00 6.46
70 71 2.967615 GGAGAATAGTGGCGGCGC 60.968 66.667 26.17 26.17 0.00 6.53
108 109 3.083997 GAGAGGGGGTGGACGCAT 61.084 66.667 0.00 0.00 0.00 4.73
109 110 2.610859 AGAGGGGGTGGACGCATT 60.611 61.111 0.00 0.00 0.00 3.56
110 111 2.438434 GAGGGGGTGGACGCATTG 60.438 66.667 0.00 0.00 0.00 2.82
111 112 3.995506 GAGGGGGTGGACGCATTGG 62.996 68.421 0.00 0.00 0.00 3.16
112 113 4.041762 GGGGGTGGACGCATTGGA 62.042 66.667 0.00 0.00 0.00 3.53
113 114 2.034999 GGGGTGGACGCATTGGAA 59.965 61.111 0.00 0.00 0.00 3.53
114 115 2.046285 GGGGTGGACGCATTGGAAG 61.046 63.158 0.00 0.00 0.00 3.46
115 116 1.303317 GGGTGGACGCATTGGAAGT 60.303 57.895 0.00 0.00 0.00 3.01
116 117 1.586154 GGGTGGACGCATTGGAAGTG 61.586 60.000 0.00 0.00 0.00 3.16
117 118 0.605319 GGTGGACGCATTGGAAGTGA 60.605 55.000 0.00 0.00 0.00 3.41
118 119 1.234821 GTGGACGCATTGGAAGTGAA 58.765 50.000 0.00 0.00 0.00 3.18
119 120 1.197721 GTGGACGCATTGGAAGTGAAG 59.802 52.381 0.00 0.00 0.00 3.02
120 121 0.804989 GGACGCATTGGAAGTGAAGG 59.195 55.000 0.00 0.00 0.00 3.46
121 122 0.804989 GACGCATTGGAAGTGAAGGG 59.195 55.000 0.00 0.00 0.00 3.95
122 123 0.400213 ACGCATTGGAAGTGAAGGGA 59.600 50.000 0.00 0.00 0.00 4.20
123 124 0.804989 CGCATTGGAAGTGAAGGGAC 59.195 55.000 0.00 0.00 0.00 4.46
125 126 1.815003 GCATTGGAAGTGAAGGGACTG 59.185 52.381 0.00 0.00 40.86 3.51
126 127 2.440409 CATTGGAAGTGAAGGGACTGG 58.560 52.381 0.00 0.00 40.86 4.00
127 128 1.518367 TTGGAAGTGAAGGGACTGGT 58.482 50.000 0.00 0.00 40.86 4.00
128 129 2.409064 TGGAAGTGAAGGGACTGGTA 57.591 50.000 0.00 0.00 40.86 3.25
129 130 2.257207 TGGAAGTGAAGGGACTGGTAG 58.743 52.381 0.00 0.00 40.86 3.18
130 131 2.258109 GGAAGTGAAGGGACTGGTAGT 58.742 52.381 0.00 0.00 40.86 2.73
131 132 2.028020 GGAAGTGAAGGGACTGGTAGTG 60.028 54.545 0.00 0.00 40.86 2.74
132 133 2.400467 AGTGAAGGGACTGGTAGTGT 57.600 50.000 0.00 0.00 40.86 3.55
133 134 2.249139 AGTGAAGGGACTGGTAGTGTC 58.751 52.381 0.00 0.00 40.86 3.67
138 139 3.376082 GGACTGGTAGTGTCCCTGA 57.624 57.895 1.76 0.00 46.01 3.86
139 140 0.896226 GGACTGGTAGTGTCCCTGAC 59.104 60.000 1.76 0.00 46.01 3.51
140 141 1.629043 GACTGGTAGTGTCCCTGACA 58.371 55.000 0.00 0.00 40.50 3.58
141 142 1.546476 GACTGGTAGTGTCCCTGACAG 59.454 57.143 0.00 0.00 43.57 3.51
142 143 0.898320 CTGGTAGTGTCCCTGACAGG 59.102 60.000 15.15 15.15 43.57 4.00
143 144 1.192146 TGGTAGTGTCCCTGACAGGC 61.192 60.000 16.72 4.00 43.57 4.85
144 145 1.597461 GTAGTGTCCCTGACAGGCC 59.403 63.158 16.72 9.06 43.57 5.19
145 146 1.982395 TAGTGTCCCTGACAGGCCG 60.982 63.158 16.72 3.58 43.57 6.13
146 147 4.394712 GTGTCCCTGACAGGCCGG 62.395 72.222 16.72 0.00 43.57 6.13
161 162 4.760047 CGGCCACGGGAGGACAAG 62.760 72.222 2.24 0.00 35.99 3.16
162 163 4.410400 GGCCACGGGAGGACAAGG 62.410 72.222 0.00 0.00 36.38 3.61
163 164 4.410400 GCCACGGGAGGACAAGGG 62.410 72.222 0.00 0.00 0.00 3.95
164 165 4.410400 CCACGGGAGGACAAGGGC 62.410 72.222 0.00 0.00 0.00 5.19
165 166 4.760047 CACGGGAGGACAAGGGCG 62.760 72.222 0.00 0.00 0.00 6.13
167 168 4.760047 CGGGAGGACAAGGGCGTG 62.760 72.222 0.00 0.00 0.00 5.34
170 171 4.681978 GAGGACAAGGGCGTGCGT 62.682 66.667 0.00 0.00 31.60 5.24
171 172 4.681978 AGGACAAGGGCGTGCGTC 62.682 66.667 2.37 2.37 31.60 5.19
176 177 4.719369 AAGGGCGTGCGTCGAGTC 62.719 66.667 0.00 0.00 42.86 3.36
195 196 4.814294 GTCCGCGCGATGTCCCTT 62.814 66.667 34.63 0.00 0.00 3.95
196 197 4.077184 TCCGCGCGATGTCCCTTT 62.077 61.111 34.63 0.00 0.00 3.11
197 198 3.564027 CCGCGCGATGTCCCTTTC 61.564 66.667 34.63 0.00 0.00 2.62
198 199 2.813474 CGCGCGATGTCCCTTTCA 60.813 61.111 28.94 0.00 0.00 2.69
199 200 2.785258 GCGCGATGTCCCTTTCAC 59.215 61.111 12.10 0.00 0.00 3.18
200 201 2.750888 GCGCGATGTCCCTTTCACC 61.751 63.158 12.10 0.00 0.00 4.02
201 202 2.106683 CGCGATGTCCCTTTCACCC 61.107 63.158 0.00 0.00 0.00 4.61
202 203 1.749258 GCGATGTCCCTTTCACCCC 60.749 63.158 0.00 0.00 0.00 4.95
203 204 1.682849 CGATGTCCCTTTCACCCCA 59.317 57.895 0.00 0.00 0.00 4.96
204 205 0.037590 CGATGTCCCTTTCACCCCAA 59.962 55.000 0.00 0.00 0.00 4.12
205 206 1.546773 CGATGTCCCTTTCACCCCAAA 60.547 52.381 0.00 0.00 0.00 3.28
206 207 1.893137 GATGTCCCTTTCACCCCAAAC 59.107 52.381 0.00 0.00 0.00 2.93
207 208 0.930726 TGTCCCTTTCACCCCAAACT 59.069 50.000 0.00 0.00 0.00 2.66
208 209 1.133606 TGTCCCTTTCACCCCAAACTC 60.134 52.381 0.00 0.00 0.00 3.01
209 210 0.109723 TCCCTTTCACCCCAAACTCG 59.890 55.000 0.00 0.00 0.00 4.18
210 211 0.893727 CCCTTTCACCCCAAACTCGG 60.894 60.000 0.00 0.00 0.00 4.63
211 212 1.524008 CCTTTCACCCCAAACTCGGC 61.524 60.000 0.00 0.00 0.00 5.54
212 213 1.852067 CTTTCACCCCAAACTCGGCG 61.852 60.000 0.00 0.00 0.00 6.46
215 216 4.572571 ACCCCAAACTCGGCGCAA 62.573 61.111 10.83 0.00 0.00 4.85
216 217 3.737172 CCCCAAACTCGGCGCAAG 61.737 66.667 10.83 8.81 43.44 4.01
217 218 2.978010 CCCAAACTCGGCGCAAGT 60.978 61.111 10.83 9.58 41.68 3.16
218 219 2.551912 CCCAAACTCGGCGCAAGTT 61.552 57.895 18.46 18.46 38.59 2.66
219 220 1.358759 CCAAACTCGGCGCAAGTTT 59.641 52.632 25.63 25.63 45.41 2.66
221 222 2.103410 AAACTCGGCGCAAGTTTGT 58.897 47.368 28.61 13.75 43.46 2.83
222 223 0.248458 AAACTCGGCGCAAGTTTGTG 60.248 50.000 28.61 8.72 43.46 3.33
228 229 2.336088 CGCAAGTTTGTGCTGGGG 59.664 61.111 0.00 0.00 42.62 4.96
229 230 2.192861 CGCAAGTTTGTGCTGGGGA 61.193 57.895 0.00 0.00 42.62 4.81
230 231 1.526575 CGCAAGTTTGTGCTGGGGAT 61.527 55.000 0.00 0.00 42.62 3.85
231 232 0.037975 GCAAGTTTGTGCTGGGGATG 60.038 55.000 0.00 0.00 41.51 3.51
232 233 0.604578 CAAGTTTGTGCTGGGGATGG 59.395 55.000 0.00 0.00 0.00 3.51
233 234 0.542702 AAGTTTGTGCTGGGGATGGG 60.543 55.000 0.00 0.00 0.00 4.00
234 235 1.228862 GTTTGTGCTGGGGATGGGT 60.229 57.895 0.00 0.00 0.00 4.51
235 236 0.831711 GTTTGTGCTGGGGATGGGTT 60.832 55.000 0.00 0.00 0.00 4.11
236 237 0.831288 TTTGTGCTGGGGATGGGTTG 60.831 55.000 0.00 0.00 0.00 3.77
237 238 1.724148 TTGTGCTGGGGATGGGTTGA 61.724 55.000 0.00 0.00 0.00 3.18
238 239 1.076549 GTGCTGGGGATGGGTTGAA 59.923 57.895 0.00 0.00 0.00 2.69
239 240 0.541764 GTGCTGGGGATGGGTTGAAA 60.542 55.000 0.00 0.00 0.00 2.69
240 241 0.189574 TGCTGGGGATGGGTTGAAAA 59.810 50.000 0.00 0.00 0.00 2.29
254 255 3.551551 GTTGAAAACGGACGAAATCTGG 58.448 45.455 0.00 0.00 36.92 3.86
255 256 3.114668 TGAAAACGGACGAAATCTGGA 57.885 42.857 0.00 0.00 38.12 3.86
256 257 2.803956 TGAAAACGGACGAAATCTGGAC 59.196 45.455 0.00 0.00 38.12 4.02
257 258 2.536761 AAACGGACGAAATCTGGACA 57.463 45.000 0.00 0.00 38.12 4.02
258 259 2.762535 AACGGACGAAATCTGGACAT 57.237 45.000 0.00 0.00 38.12 3.06
259 260 2.762535 ACGGACGAAATCTGGACATT 57.237 45.000 0.00 0.00 38.12 2.71
260 261 3.053831 ACGGACGAAATCTGGACATTT 57.946 42.857 0.00 0.00 38.12 2.32
261 262 2.742053 ACGGACGAAATCTGGACATTTG 59.258 45.455 0.00 0.00 38.12 2.32
262 263 2.742053 CGGACGAAATCTGGACATTTGT 59.258 45.455 0.00 0.00 0.00 2.83
263 264 3.181520 CGGACGAAATCTGGACATTTGTC 60.182 47.826 1.99 1.99 44.04 3.18
274 275 1.471287 GACATTTGTCCGTTTAGGGCC 59.529 52.381 0.00 0.00 46.38 5.80
275 276 0.450184 CATTTGTCCGTTTAGGGCCG 59.550 55.000 0.00 0.00 46.38 6.13
276 277 1.310216 ATTTGTCCGTTTAGGGCCGC 61.310 55.000 0.00 0.00 46.38 6.53
277 278 4.745751 TGTCCGTTTAGGGCCGCG 62.746 66.667 0.00 0.00 46.38 6.46
282 283 4.454717 GTTTAGGGCCGCGCGTTG 62.455 66.667 29.95 15.79 0.00 4.10
293 294 4.891727 CGCGTTGGGCCGAGCTAT 62.892 66.667 14.16 0.00 38.94 2.97
294 295 2.513897 GCGTTGGGCCGAGCTATT 60.514 61.111 9.91 0.00 34.80 1.73
295 296 2.534903 GCGTTGGGCCGAGCTATTC 61.535 63.158 9.91 0.00 34.80 1.75
299 300 2.029221 GGGCCGAGCTATTCGTCC 59.971 66.667 0.00 0.00 46.32 4.79
304 305 3.920144 CGAGCTATTCGTCCGTTCT 57.080 52.632 0.00 0.00 44.27 3.01
306 307 2.637595 CGAGCTATTCGTCCGTTCTAC 58.362 52.381 0.00 0.00 44.27 2.59
307 308 2.601741 CGAGCTATTCGTCCGTTCTACC 60.602 54.545 0.00 0.00 44.27 3.18
308 309 1.680207 AGCTATTCGTCCGTTCTACCC 59.320 52.381 0.00 0.00 0.00 3.69
309 310 1.269465 GCTATTCGTCCGTTCTACCCC 60.269 57.143 0.00 0.00 0.00 4.95
310 311 2.026641 CTATTCGTCCGTTCTACCCCA 58.973 52.381 0.00 0.00 0.00 4.96
311 312 1.269012 ATTCGTCCGTTCTACCCCAA 58.731 50.000 0.00 0.00 0.00 4.12
312 313 1.047002 TTCGTCCGTTCTACCCCAAA 58.953 50.000 0.00 0.00 0.00 3.28
313 314 1.269012 TCGTCCGTTCTACCCCAAAT 58.731 50.000 0.00 0.00 0.00 2.32
314 315 1.066716 TCGTCCGTTCTACCCCAAATG 60.067 52.381 0.00 0.00 0.00 2.32
315 316 1.066716 CGTCCGTTCTACCCCAAATGA 60.067 52.381 0.00 0.00 0.00 2.57
316 317 2.613474 CGTCCGTTCTACCCCAAATGAA 60.613 50.000 0.00 0.00 0.00 2.57
317 318 2.745821 GTCCGTTCTACCCCAAATGAAC 59.254 50.000 0.00 0.00 36.44 3.18
319 320 2.913777 GTTCTACCCCAAATGAACGC 57.086 50.000 0.00 0.00 31.25 4.84
320 321 2.156098 GTTCTACCCCAAATGAACGCA 58.844 47.619 0.00 0.00 31.25 5.24
321 322 1.816074 TCTACCCCAAATGAACGCAC 58.184 50.000 0.00 0.00 0.00 5.34
322 323 0.808755 CTACCCCAAATGAACGCACC 59.191 55.000 0.00 0.00 0.00 5.01
323 324 0.609681 TACCCCAAATGAACGCACCC 60.610 55.000 0.00 0.00 0.00 4.61
324 325 2.566010 CCCAAATGAACGCACCCG 59.434 61.111 0.00 0.00 41.14 5.28
325 326 1.969064 CCCAAATGAACGCACCCGA 60.969 57.895 0.00 0.00 38.29 5.14
326 327 1.519751 CCCAAATGAACGCACCCGAA 61.520 55.000 0.00 0.00 38.29 4.30
327 328 0.525761 CCAAATGAACGCACCCGAAT 59.474 50.000 0.00 0.00 38.29 3.34
328 329 1.740585 CCAAATGAACGCACCCGAATA 59.259 47.619 0.00 0.00 38.29 1.75
329 330 2.223249 CCAAATGAACGCACCCGAATAG 60.223 50.000 0.00 0.00 38.29 1.73
330 331 2.675844 CAAATGAACGCACCCGAATAGA 59.324 45.455 0.00 0.00 38.29 1.98
331 332 2.684001 ATGAACGCACCCGAATAGAA 57.316 45.000 0.00 0.00 38.29 2.10
332 333 2.684001 TGAACGCACCCGAATAGAAT 57.316 45.000 0.00 0.00 38.29 2.40
333 334 2.276201 TGAACGCACCCGAATAGAATG 58.724 47.619 0.00 0.00 38.29 2.67
334 335 1.597663 GAACGCACCCGAATAGAATGG 59.402 52.381 0.00 0.00 38.29 3.16
338 339 4.821935 CCCGAATAGAATGGGGGC 57.178 61.111 0.00 0.00 39.39 5.80
339 340 1.302511 CCCGAATAGAATGGGGGCG 60.303 63.158 0.00 0.00 39.39 6.13
340 341 1.450211 CCGAATAGAATGGGGGCGT 59.550 57.895 0.00 0.00 0.00 5.68
341 342 0.884704 CCGAATAGAATGGGGGCGTG 60.885 60.000 0.00 0.00 0.00 5.34
342 343 1.507141 CGAATAGAATGGGGGCGTGC 61.507 60.000 0.00 0.00 0.00 5.34
343 344 1.507141 GAATAGAATGGGGGCGTGCG 61.507 60.000 0.00 0.00 0.00 5.34
344 345 4.849310 TAGAATGGGGGCGTGCGC 62.849 66.667 8.17 8.17 41.06 6.09
346 347 4.849310 GAATGGGGGCGTGCGCTA 62.849 66.667 16.21 0.00 41.60 4.26
347 348 4.856801 AATGGGGGCGTGCGCTAG 62.857 66.667 16.21 3.23 41.60 3.42
351 352 4.452733 GGGGCGTGCGCTAGAGTT 62.453 66.667 16.21 0.00 41.60 3.01
352 353 3.188786 GGGCGTGCGCTAGAGTTG 61.189 66.667 16.21 0.00 41.60 3.16
353 354 3.188786 GGCGTGCGCTAGAGTTGG 61.189 66.667 16.21 0.00 41.60 3.77
384 385 5.046014 ACTTGCACTTAGGATCTTGTCTCAT 60.046 40.000 0.00 0.00 0.00 2.90
407 408 8.160765 TCATTTTTCAACATGGTCCTAGTAGAA 58.839 33.333 0.00 0.00 0.00 2.10
413 414 6.934645 TCAACATGGTCCTAGTAGAAACTTTG 59.065 38.462 0.00 2.41 37.15 2.77
418 419 7.311092 TGGTCCTAGTAGAAACTTTGATGAA 57.689 36.000 0.00 0.00 37.15 2.57
435 436 5.582550 TGATGAAGTATCTTGAGCGTGTAG 58.417 41.667 0.00 0.00 36.71 2.74
439 440 6.726230 TGAAGTATCTTGAGCGTGTAGATAC 58.274 40.000 16.66 16.66 45.62 2.24
440 441 6.317893 TGAAGTATCTTGAGCGTGTAGATACA 59.682 38.462 21.95 0.00 46.76 2.29
444 445 4.174009 TCTTGAGCGTGTAGATACAAAGC 58.826 43.478 11.51 11.51 40.27 3.51
494 495 1.974236 AGGTCACCTCAGTTCTCAAGG 59.026 52.381 0.00 0.00 36.21 3.61
574 603 8.430801 ACAAATCTAGTGATCTAAACTGCATC 57.569 34.615 0.00 0.00 31.51 3.91
639 669 3.676291 TTTGACCTAAAATGCAAGGGC 57.324 42.857 7.09 4.06 41.75 5.19
667 697 5.077134 ACTTGTAAACCCGGAGTATGTAC 57.923 43.478 0.73 4.12 0.00 2.90
668 698 4.527816 ACTTGTAAACCCGGAGTATGTACA 59.472 41.667 0.73 0.00 0.00 2.90
699 775 2.673368 CCCATAAACGTGCTCAGAGTTC 59.327 50.000 0.00 0.00 0.00 3.01
729 805 3.502595 GGGAAGAAAAGAAGGAGAAACGG 59.497 47.826 0.00 0.00 0.00 4.44
778 855 1.013596 CACGCACAAGTTGTTCCTCA 58.986 50.000 5.57 0.00 0.00 3.86
968 1058 1.482954 GCGACTTAACCCTACTCCCT 58.517 55.000 0.00 0.00 0.00 4.20
1274 1368 2.070028 GAGCGTCTCCTCTGGTTTTTC 58.930 52.381 0.00 0.00 0.00 2.29
1346 1440 3.691342 CCCCTCGTGCGGTTCTGA 61.691 66.667 0.00 0.00 0.00 3.27
1368 1462 1.739466 GATTGTTGCCTTCGAGCATGA 59.261 47.619 0.00 0.00 43.64 3.07
1369 1463 1.159285 TTGTTGCCTTCGAGCATGAG 58.841 50.000 0.00 0.00 43.64 2.90
1371 1465 1.003476 TTGCCTTCGAGCATGAGCA 60.003 52.632 0.00 0.00 43.64 4.26
1372 1466 0.393402 TTGCCTTCGAGCATGAGCAT 60.393 50.000 0.00 0.00 43.64 3.79
1373 1467 1.093496 TGCCTTCGAGCATGAGCATG 61.093 55.000 6.11 6.11 45.49 4.06
1379 1473 3.751202 AGCATGAGCATGGTCCCT 58.249 55.556 21.58 12.27 45.37 4.20
1380 1474 1.530771 AGCATGAGCATGGTCCCTC 59.469 57.895 21.58 10.26 45.37 4.30
1381 1475 0.987081 AGCATGAGCATGGTCCCTCT 60.987 55.000 21.58 12.22 45.37 3.69
1422 1517 2.890311 TGTTGGGGTTAATTCTGTGCTG 59.110 45.455 0.00 0.00 0.00 4.41
1427 1522 2.095372 GGGTTAATTCTGTGCTGCGTAC 59.905 50.000 0.00 0.00 0.00 3.67
1432 1527 0.663269 TTCTGTGCTGCGTACACTCG 60.663 55.000 0.00 0.00 38.86 4.18
1436 1531 1.372499 TGCTGCGTACACTCGGAAC 60.372 57.895 0.00 0.00 0.00 3.62
1458 1553 2.417243 GCACCTGTAACCAATTGGATGC 60.417 50.000 31.22 22.43 38.94 3.91
1483 1578 7.102346 CCAATGGCTAATTTGGTGACATTTTA 58.898 34.615 0.00 0.00 42.32 1.52
1517 1613 8.752005 TTTAGTAGGATATTTGCAGCTTCAAT 57.248 30.769 0.00 0.00 0.00 2.57
1523 1619 6.154021 AGGATATTTGCAGCTTCAATGAAGTT 59.846 34.615 22.28 15.08 41.27 2.66
1584 1681 6.937436 ACTCTAATTCTTTTGGTGAACGTT 57.063 33.333 0.00 0.00 0.00 3.99
1595 1692 6.438259 TTTGGTGAACGTTCAGAAACATTA 57.562 33.333 30.38 14.45 37.98 1.90
1603 1700 4.565564 ACGTTCAGAAACATTAGATACGGC 59.434 41.667 0.00 0.00 34.93 5.68
1608 1705 4.209288 CAGAAACATTAGATACGGCGGAAG 59.791 45.833 13.24 0.00 0.00 3.46
1623 1720 4.610680 CGGCGGAAGTTTCTAGTTCTTTTG 60.611 45.833 0.00 0.00 34.68 2.44
1624 1721 4.275196 GGCGGAAGTTTCTAGTTCTTTTGT 59.725 41.667 0.00 0.00 34.68 2.83
1625 1722 5.205565 GCGGAAGTTTCTAGTTCTTTTGTG 58.794 41.667 0.00 0.00 34.68 3.33
1626 1723 5.748592 CGGAAGTTTCTAGTTCTTTTGTGG 58.251 41.667 0.00 0.00 34.68 4.17
1627 1724 5.277828 CGGAAGTTTCTAGTTCTTTTGTGGG 60.278 44.000 0.00 0.00 34.68 4.61
1628 1725 5.009710 GGAAGTTTCTAGTTCTTTTGTGGGG 59.990 44.000 0.00 0.00 34.68 4.96
1629 1726 4.470602 AGTTTCTAGTTCTTTTGTGGGGG 58.529 43.478 0.00 0.00 0.00 5.40
1630 1727 4.167307 AGTTTCTAGTTCTTTTGTGGGGGA 59.833 41.667 0.00 0.00 0.00 4.81
1631 1728 4.799715 TTCTAGTTCTTTTGTGGGGGAA 57.200 40.909 0.00 0.00 0.00 3.97
1632 1729 4.799715 TCTAGTTCTTTTGTGGGGGAAA 57.200 40.909 0.00 0.00 0.00 3.13
1633 1730 5.132043 TCTAGTTCTTTTGTGGGGGAAAA 57.868 39.130 0.00 0.00 0.00 2.29
1634 1731 4.891168 TCTAGTTCTTTTGTGGGGGAAAAC 59.109 41.667 0.00 0.00 0.00 2.43
1635 1732 2.429250 AGTTCTTTTGTGGGGGAAAACG 59.571 45.455 0.00 0.00 0.00 3.60
1636 1733 2.427812 GTTCTTTTGTGGGGGAAAACGA 59.572 45.455 0.00 0.00 0.00 3.85
1637 1734 2.952116 TCTTTTGTGGGGGAAAACGAT 58.048 42.857 0.00 0.00 0.00 3.73
1638 1735 4.101645 TCTTTTGTGGGGGAAAACGATA 57.898 40.909 0.00 0.00 0.00 2.92
1639 1736 4.668636 TCTTTTGTGGGGGAAAACGATAT 58.331 39.130 0.00 0.00 0.00 1.63
1640 1737 5.081032 TCTTTTGTGGGGGAAAACGATATT 58.919 37.500 0.00 0.00 0.00 1.28
1641 1738 5.184287 TCTTTTGTGGGGGAAAACGATATTC 59.816 40.000 0.00 0.00 0.00 1.75
1642 1739 4.310022 TTGTGGGGGAAAACGATATTCT 57.690 40.909 0.00 0.00 0.00 2.40
1643 1740 4.310022 TGTGGGGGAAAACGATATTCTT 57.690 40.909 0.00 0.00 0.00 2.52
1644 1741 4.668636 TGTGGGGGAAAACGATATTCTTT 58.331 39.130 0.00 0.00 0.00 2.52
1645 1742 5.081032 TGTGGGGGAAAACGATATTCTTTT 58.919 37.500 0.00 0.00 0.00 2.27
1657 1755 6.772078 ACGATATTCTTTTCGTGTTCCAATC 58.228 36.000 0.00 0.00 46.03 2.67
1658 1756 6.183360 ACGATATTCTTTTCGTGTTCCAATCC 60.183 38.462 0.00 0.00 46.03 3.01
1660 1758 4.829064 TTCTTTTCGTGTTCCAATCCAG 57.171 40.909 0.00 0.00 0.00 3.86
1661 1759 3.146066 TCTTTTCGTGTTCCAATCCAGG 58.854 45.455 0.00 0.00 0.00 4.45
1662 1760 1.904287 TTTCGTGTTCCAATCCAGGG 58.096 50.000 0.00 0.00 0.00 4.45
1663 1761 0.768622 TTCGTGTTCCAATCCAGGGT 59.231 50.000 0.00 0.00 0.00 4.34
1664 1762 0.768622 TCGTGTTCCAATCCAGGGTT 59.231 50.000 0.00 0.00 0.00 4.11
1665 1763 0.881118 CGTGTTCCAATCCAGGGTTG 59.119 55.000 5.31 5.31 0.00 3.77
1666 1764 1.256812 GTGTTCCAATCCAGGGTTGG 58.743 55.000 24.50 24.50 45.94 3.77
1672 1774 3.282374 AATCCAGGGTTGGGCCGTC 62.282 63.158 0.00 0.00 45.10 4.79
1696 1798 5.107109 TGTGTATTTGTGCAGTTCATGAC 57.893 39.130 0.00 0.00 0.00 3.06
1708 1810 7.924947 TGTGCAGTTCATGACATTTTGAATAAA 59.075 29.630 0.00 0.00 34.60 1.40
1723 1825 3.129638 TGAATAAAATACACCGCTTGGGC 59.870 43.478 0.00 0.00 40.62 5.36
1760 1862 7.328737 ACAATTGTGGTACTAGTAGAATGGAC 58.671 38.462 11.07 0.00 0.00 4.02
1768 1871 5.091261 ACTAGTAGAATGGACAGGCAAAG 57.909 43.478 3.59 0.00 0.00 2.77
1981 2086 0.256177 GGCAAAACCCCCAAACCAAA 59.744 50.000 0.00 0.00 0.00 3.28
1987 2092 0.399806 ACCCCCAAACCAAACAGCAT 60.400 50.000 0.00 0.00 0.00 3.79
2022 2127 9.503427 CAAACAATATAGTAGCTAAAAACTGCC 57.497 33.333 0.00 0.00 0.00 4.85
2026 2131 8.552034 CAATATAGTAGCTAAAAACTGCCAGAC 58.448 37.037 0.00 0.00 0.00 3.51
2148 2253 7.523293 TGAGAAAATGTTTTTCTGCAGGATA 57.477 32.000 15.13 0.00 38.73 2.59
2162 2267 5.897250 TCTGCAGGATATAGTGGAGTGTTAA 59.103 40.000 15.13 0.00 34.03 2.01
2163 2268 6.554982 TCTGCAGGATATAGTGGAGTGTTAAT 59.445 38.462 15.13 0.00 34.03 1.40
2179 2284 9.158233 GGAGTGTTAATACATGCTGTTACTAAA 57.842 33.333 5.08 0.00 36.50 1.85
2209 2314 7.704789 AAAGTTTCTCAGTGCATTGATTTTC 57.295 32.000 12.75 4.74 0.00 2.29
2215 2320 6.370593 TCTCAGTGCATTGATTTTCGTTAAC 58.629 36.000 12.75 0.00 0.00 2.01
2217 2322 3.911964 AGTGCATTGATTTTCGTTAACGC 59.088 39.130 22.96 9.22 39.60 4.84
2226 2331 0.854062 TTCGTTAACGCGGTTCAGTG 59.146 50.000 22.96 0.00 39.60 3.66
2237 2342 1.463056 CGGTTCAGTGCAAAAGCGATA 59.537 47.619 18.83 0.00 46.20 2.92
2238 2343 2.095853 CGGTTCAGTGCAAAAGCGATAT 59.904 45.455 18.83 0.00 46.20 1.63
2243 2348 7.414436 GGTTCAGTGCAAAAGCGATATTTATA 58.586 34.615 0.00 0.00 0.00 0.98
2245 2350 8.895845 GTTCAGTGCAAAAGCGATATTTATATG 58.104 33.333 0.00 0.00 0.00 1.78
2312 2418 2.953648 CGTACTTGGGGTTTTGAGGTTT 59.046 45.455 0.00 0.00 0.00 3.27
2527 2635 3.821033 CAGTGGTTAAGGCTTAGTTTGCT 59.179 43.478 7.09 1.58 0.00 3.91
2529 2637 2.556622 TGGTTAAGGCTTAGTTTGCTGC 59.443 45.455 7.09 0.00 0.00 5.25
2532 2640 1.986882 AAGGCTTAGTTTGCTGCTGT 58.013 45.000 0.00 0.00 0.00 4.40
2542 2652 5.209818 AGTTTGCTGCTGTTACTGTACTA 57.790 39.130 0.00 0.00 0.00 1.82
2550 2660 6.151663 TGCTGTTACTGTACTACACTGAAA 57.848 37.500 0.00 0.00 0.00 2.69
2637 2747 0.240945 GGCAACAGTTTGTAGCGCAT 59.759 50.000 11.47 0.00 34.90 4.73
2670 2780 6.135290 TCATAATCTAGTGCAATGCCAAAC 57.865 37.500 1.53 0.00 0.00 2.93
2671 2781 5.651576 TCATAATCTAGTGCAATGCCAAACA 59.348 36.000 1.53 0.00 0.00 2.83
2672 2782 4.445452 AATCTAGTGCAATGCCAAACAG 57.555 40.909 1.53 0.00 0.00 3.16
2673 2783 2.862541 TCTAGTGCAATGCCAAACAGT 58.137 42.857 1.53 0.00 0.00 3.55
2674 2784 4.014569 TCTAGTGCAATGCCAAACAGTA 57.985 40.909 1.53 0.00 0.00 2.74
2675 2785 4.002982 TCTAGTGCAATGCCAAACAGTAG 58.997 43.478 1.53 0.39 37.39 2.57
2677 2787 2.554032 AGTGCAATGCCAAACAGTAGAC 59.446 45.455 1.53 0.00 0.00 2.59
2678 2788 2.554032 GTGCAATGCCAAACAGTAGACT 59.446 45.455 1.53 0.00 0.00 3.24
3081 3354 4.833478 AAGGTGTGCACTTCATATCTCT 57.167 40.909 19.41 0.46 0.00 3.10
3131 3405 7.118723 TGCTTCAGATAGAAATTAACCATGGT 58.881 34.615 13.00 13.00 35.40 3.55
3398 3672 1.131126 CAATGTTCTCACGGTGATGGC 59.869 52.381 11.86 5.30 0.00 4.40
3438 3712 3.137687 TGAGTGGCGCTGACTCAA 58.862 55.556 28.92 17.90 45.38 3.02
3439 3713 1.673477 TGAGTGGCGCTGACTCAAT 59.327 52.632 28.92 11.10 45.38 2.57
3471 3745 3.457380 ACCTGATGTCCAGCAGAATACAT 59.543 43.478 13.77 0.00 46.99 2.29
3629 3903 5.273170 CAAGTTCGTTCAAATGAGCTCAAA 58.727 37.500 22.50 7.56 34.90 2.69
3792 4066 2.027745 ACTCAAATGCAGGACACGAGAT 60.028 45.455 0.00 0.00 0.00 2.75
3931 4205 1.579932 CCTGTGCAGCTGCTTCAAG 59.420 57.895 36.61 25.88 42.66 3.02
3938 4212 1.952367 GCAGCTGCTTCAAGGGTATGT 60.952 52.381 31.33 0.00 38.21 2.29
3955 4229 5.104374 GGTATGTGCCATTGTCTTTGATTG 58.896 41.667 0.00 0.00 0.00 2.67
4055 4329 4.568956 CCAAATCTTGGTGGATTCCAAAC 58.431 43.478 7.05 4.34 45.26 2.93
4091 4365 5.186996 TCAACTCAGGATTGCTGTTTTTC 57.813 39.130 5.02 0.00 0.00 2.29
4100 4374 5.479375 AGGATTGCTGTTTTTCAGATGTCAT 59.521 36.000 0.00 0.00 46.27 3.06
4154 4428 5.473066 TGCTGATGATTCTATTGATCGGA 57.527 39.130 0.00 0.00 0.00 4.55
4175 4449 3.342377 TGGTTGATATTCCAGCGTTCA 57.658 42.857 0.00 0.00 0.00 3.18
4265 4539 0.586802 GAAGGTTCTGCGTTGACACC 59.413 55.000 0.00 0.00 0.00 4.16
4268 4542 0.034337 GGTTCTGCGTTGACACCCTA 59.966 55.000 0.00 0.00 0.00 3.53
4271 4545 1.741770 CTGCGTTGACACCCTAGGC 60.742 63.158 2.05 0.00 33.25 3.93
4292 4566 1.908619 GGGGATGGAAATGTTTGGCTT 59.091 47.619 0.00 0.00 0.00 4.35
4448 4722 3.982058 GGTACATATTCTACGCTGTGCTC 59.018 47.826 0.00 0.00 0.00 4.26
4455 4729 1.067565 TCTACGCTGTGCTCTCTTTGG 60.068 52.381 0.00 0.00 0.00 3.28
4508 4782 2.228582 CGCATCTCTATCAGACTGGAGG 59.771 54.545 1.81 0.00 32.26 4.30
4514 4788 4.078922 TCTCTATCAGACTGGAGGGAACAT 60.079 45.833 1.81 0.00 0.00 2.71
4523 4797 1.355381 TGGAGGGAACATGCAGTTGAT 59.645 47.619 6.31 0.00 41.51 2.57
4531 4805 6.713903 AGGGAACATGCAGTTGATTATATGAG 59.286 38.462 6.31 0.00 41.51 2.90
4600 4874 2.232208 GCCATTAATTAGCATGGGAGCC 59.768 50.000 15.10 0.00 40.49 4.70
4629 4903 3.826157 TCGGAAAATTTGTCAGGCAGAAT 59.174 39.130 0.00 0.00 0.00 2.40
4631 4905 5.123820 TCGGAAAATTTGTCAGGCAGAATAG 59.876 40.000 0.00 0.00 0.00 1.73
4708 4982 1.406614 GGAGTGTCATCTTCTGGCCTG 60.407 57.143 3.32 2.92 0.00 4.85
4709 4983 1.552337 GAGTGTCATCTTCTGGCCTGA 59.448 52.381 8.48 8.48 0.00 3.86
4710 4984 1.980765 AGTGTCATCTTCTGGCCTGAA 59.019 47.619 22.23 22.23 0.00 3.02
4711 4985 2.575279 AGTGTCATCTTCTGGCCTGAAT 59.425 45.455 23.59 8.93 0.00 2.57
4712 4986 2.941720 GTGTCATCTTCTGGCCTGAATC 59.058 50.000 23.59 12.81 0.00 2.52
4713 4987 2.842496 TGTCATCTTCTGGCCTGAATCT 59.158 45.455 23.59 12.19 0.00 2.40
4714 4988 3.204526 GTCATCTTCTGGCCTGAATCTG 58.795 50.000 23.59 21.35 0.00 2.90
4715 4989 2.172082 TCATCTTCTGGCCTGAATCTGG 59.828 50.000 23.59 13.10 0.00 3.86
4716 4990 0.254178 TCTTCTGGCCTGAATCTGGC 59.746 55.000 23.59 21.00 45.73 4.85
4743 5017 6.551601 TGAATCTCCCTTCCTACTTAGTCATC 59.448 42.308 0.00 0.00 0.00 2.92
4744 5018 5.735733 TCTCCCTTCCTACTTAGTCATCT 57.264 43.478 0.00 0.00 0.00 2.90
4754 5028 4.974645 ACTTAGTCATCTGGTGAACCAA 57.025 40.909 3.33 0.00 46.97 3.67
4773 5050 3.044986 CAAGTTTTGATGGTTGTGCTCG 58.955 45.455 0.00 0.00 0.00 5.03
4784 5061 2.823196 TTGTGCTCGTTTGTCACAAG 57.177 45.000 3.27 0.00 43.30 3.16
4786 5063 0.376852 GTGCTCGTTTGTCACAAGCA 59.623 50.000 5.15 1.27 0.00 3.91
4862 5139 6.438741 TCATCATGAGGACTCTTTAGTTGTCT 59.561 38.462 5.84 0.00 35.56 3.41
4863 5140 7.615757 TCATCATGAGGACTCTTTAGTTGTCTA 59.384 37.037 5.84 0.00 35.56 2.59
4901 5178 1.266446 CGATGTTGTGTGGACATTGCA 59.734 47.619 0.00 0.00 37.83 4.08
4932 5209 9.921637 GTGAATCCATTGGTTTATTCTTTTGTA 57.078 29.630 13.71 0.00 31.16 2.41
4976 5253 9.605275 TTGTTCAACATATTTTCATTTGGTTGA 57.395 25.926 0.00 0.00 0.00 3.18
5008 5285 2.479560 GCATATGCAACCGTCCCTTTTC 60.480 50.000 22.84 0.00 41.59 2.29
5015 5292 2.663196 CGTCCCTTTTCTCGGCCT 59.337 61.111 0.00 0.00 0.00 5.19
5021 5298 1.383523 CCTTTTCTCGGCCTGATTCC 58.616 55.000 0.00 0.00 0.00 3.01
5028 5305 0.911769 TCGGCCTGATTCCAGATTGT 59.088 50.000 0.00 0.00 43.02 2.71
5044 5321 4.516698 CAGATTGTGAGCTGTTTGGTTAGT 59.483 41.667 0.00 0.00 34.63 2.24
5045 5322 5.700832 CAGATTGTGAGCTGTTTGGTTAGTA 59.299 40.000 0.00 0.00 34.63 1.82
5046 5323 5.934625 AGATTGTGAGCTGTTTGGTTAGTAG 59.065 40.000 0.00 0.00 0.00 2.57
5056 5333 5.925509 TGTTTGGTTAGTAGCAGTTCTCTT 58.074 37.500 0.00 0.00 32.55 2.85
5065 5342 1.864862 CAGTTCTCTTGCCACAGCG 59.135 57.895 0.00 0.00 44.31 5.18
5079 5356 2.151202 CACAGCGGTGGTAAAACTGAT 58.849 47.619 20.20 0.00 41.45 2.90
5225 5505 8.825745 TGTTTTTGGCAATGAGAAATCTTAAAC 58.174 29.630 0.00 4.88 0.00 2.01
5226 5506 8.825745 GTTTTTGGCAATGAGAAATCTTAAACA 58.174 29.630 0.00 0.00 0.00 2.83
5230 5510 7.894708 TGGCAATGAGAAATCTTAAACAATCA 58.105 30.769 0.00 0.00 0.00 2.57
5276 5557 5.694231 TCATTTGGAGATGTTTGTGACAG 57.306 39.130 0.00 0.00 42.62 3.51
5277 5558 3.988379 TTTGGAGATGTTTGTGACAGC 57.012 42.857 0.00 0.00 44.92 4.40
5278 5559 2.636647 TGGAGATGTTTGTGACAGCA 57.363 45.000 0.00 0.00 46.95 4.41
5279 5560 2.929641 TGGAGATGTTTGTGACAGCAA 58.070 42.857 0.00 0.00 46.95 3.91
5298 5626 4.274459 AGCAATCTACAAATCGCCATCTTC 59.726 41.667 0.00 0.00 0.00 2.87
5306 6210 4.168760 CAAATCGCCATCTTCAAAAGGAC 58.831 43.478 0.00 0.00 0.00 3.85
5326 6243 6.303839 AGGACAGGCTAAAACTTGTGAATTA 58.696 36.000 0.00 0.00 0.00 1.40
5339 6256 5.362430 ACTTGTGAATTAAAGAGTTGGGCAA 59.638 36.000 2.86 0.00 0.00 4.52
5357 6274 0.691078 AAGCCAGCCGAGGGAAGATA 60.691 55.000 0.00 0.00 0.00 1.98
5364 6281 2.432510 AGCCGAGGGAAGATAGTTTCTG 59.567 50.000 0.00 0.00 33.93 3.02
5371 6288 3.383825 GGGAAGATAGTTTCTGAGCCGTA 59.616 47.826 0.00 0.00 33.93 4.02
5405 6322 0.979709 TGGCCATGTCTCCCTCTCTG 60.980 60.000 0.00 0.00 0.00 3.35
5410 6327 0.398381 ATGTCTCCCTCTCTGAGCCC 60.398 60.000 0.00 0.00 0.00 5.19
5433 6350 0.671781 CTCACCTCTCCAAACAGGCG 60.672 60.000 0.00 0.00 37.29 5.52
5462 6379 4.615815 GCCGCCTCTCATCGCCAT 62.616 66.667 0.00 0.00 0.00 4.40
5469 6386 0.665298 CTCTCATCGCCATGACGAGA 59.335 55.000 10.54 6.80 43.25 4.04
5470 6387 0.382158 TCTCATCGCCATGACGAGAC 59.618 55.000 10.54 0.00 40.78 3.36
5471 6388 0.101219 CTCATCGCCATGACGAGACA 59.899 55.000 10.54 0.00 46.69 3.41
5472 6389 0.179137 TCATCGCCATGACGAGACAC 60.179 55.000 10.54 0.00 46.69 3.67
5473 6390 0.179127 CATCGCCATGACGAGACACT 60.179 55.000 10.54 0.00 46.69 3.55
5474 6391 1.065551 CATCGCCATGACGAGACACTA 59.934 52.381 10.54 0.00 46.69 2.74
5475 6392 1.170442 TCGCCATGACGAGACACTAA 58.830 50.000 0.00 0.00 37.09 2.24
5476 6393 1.749063 TCGCCATGACGAGACACTAAT 59.251 47.619 0.00 0.00 37.09 1.73
5477 6394 2.120232 CGCCATGACGAGACACTAATC 58.880 52.381 0.00 0.00 34.06 1.75
5478 6395 2.223595 CGCCATGACGAGACACTAATCT 60.224 50.000 0.00 0.00 34.06 2.40
5479 6396 3.735208 CGCCATGACGAGACACTAATCTT 60.735 47.826 0.00 0.00 34.06 2.40
5480 6397 3.553511 GCCATGACGAGACACTAATCTTG 59.446 47.826 0.00 0.00 36.33 3.02
5481 6398 4.678044 GCCATGACGAGACACTAATCTTGA 60.678 45.833 0.00 0.00 34.58 3.02
5482 6399 5.410924 CCATGACGAGACACTAATCTTGAA 58.589 41.667 0.00 0.00 34.58 2.69
5483 6400 6.045318 CCATGACGAGACACTAATCTTGAAT 58.955 40.000 0.00 0.00 34.58 2.57
5484 6401 6.019237 CCATGACGAGACACTAATCTTGAATG 60.019 42.308 0.00 1.76 34.58 2.67
5485 6402 6.025749 TGACGAGACACTAATCTTGAATGT 57.974 37.500 0.00 0.00 34.58 2.71
5486 6403 5.863935 TGACGAGACACTAATCTTGAATGTG 59.136 40.000 0.00 0.00 34.58 3.21
5487 6404 6.025749 ACGAGACACTAATCTTGAATGTGA 57.974 37.500 0.00 0.00 34.58 3.58
5488 6405 6.096036 ACGAGACACTAATCTTGAATGTGAG 58.904 40.000 0.00 0.00 34.58 3.51
5489 6406 5.518128 CGAGACACTAATCTTGAATGTGAGG 59.482 44.000 0.00 0.00 32.45 3.86
5490 6407 5.738909 AGACACTAATCTTGAATGTGAGGG 58.261 41.667 0.00 0.00 33.41 4.30
5491 6408 4.848357 ACACTAATCTTGAATGTGAGGGG 58.152 43.478 0.00 0.00 33.41 4.79
5492 6409 3.629398 CACTAATCTTGAATGTGAGGGGC 59.371 47.826 0.00 0.00 0.00 5.80
5493 6410 2.149973 AATCTTGAATGTGAGGGGCC 57.850 50.000 0.00 0.00 0.00 5.80
5494 6411 1.302907 ATCTTGAATGTGAGGGGCCT 58.697 50.000 0.84 0.00 0.00 5.19
5495 6412 0.329261 TCTTGAATGTGAGGGGCCTG 59.671 55.000 0.84 0.00 0.00 4.85
5496 6413 0.682209 CTTGAATGTGAGGGGCCTGG 60.682 60.000 0.84 0.00 0.00 4.45
5497 6414 2.440980 GAATGTGAGGGGCCTGGC 60.441 66.667 11.05 11.05 0.00 4.85
5509 6426 3.324713 CCTGGCCAGGTAGAAGGG 58.675 66.667 39.52 16.27 43.61 3.95
5510 6427 2.378634 CCTGGCCAGGTAGAAGGGG 61.379 68.421 39.52 15.49 43.61 4.79
5511 6428 2.286121 TGGCCAGGTAGAAGGGGG 60.286 66.667 0.00 0.00 0.00 5.40
5512 6429 3.810188 GGCCAGGTAGAAGGGGGC 61.810 72.222 0.00 0.00 43.86 5.80
5513 6430 3.015145 GCCAGGTAGAAGGGGGCA 61.015 66.667 0.00 0.00 44.01 5.36
5514 6431 2.612493 GCCAGGTAGAAGGGGGCAA 61.612 63.158 0.00 0.00 44.01 4.52
5515 6432 1.303282 CCAGGTAGAAGGGGGCAAC 59.697 63.158 0.00 0.00 0.00 4.17
5531 6448 4.207891 GGCAACCTTCTGAAGTGATAGA 57.792 45.455 15.72 0.00 0.00 1.98
5532 6449 4.187694 GGCAACCTTCTGAAGTGATAGAG 58.812 47.826 15.72 1.91 0.00 2.43
5533 6450 4.323104 GGCAACCTTCTGAAGTGATAGAGT 60.323 45.833 15.72 2.50 0.00 3.24
5534 6451 4.629200 GCAACCTTCTGAAGTGATAGAGTG 59.371 45.833 15.72 5.92 0.00 3.51
5535 6452 5.567623 GCAACCTTCTGAAGTGATAGAGTGA 60.568 44.000 15.72 0.00 0.00 3.41
5536 6453 5.913137 ACCTTCTGAAGTGATAGAGTGAG 57.087 43.478 15.72 0.00 0.00 3.51
5537 6454 5.329399 ACCTTCTGAAGTGATAGAGTGAGT 58.671 41.667 15.72 0.02 0.00 3.41
5538 6455 5.184864 ACCTTCTGAAGTGATAGAGTGAGTG 59.815 44.000 15.72 0.00 0.00 3.51
5539 6456 5.394005 CCTTCTGAAGTGATAGAGTGAGTGG 60.394 48.000 15.72 0.00 0.00 4.00
5540 6457 4.923415 TCTGAAGTGATAGAGTGAGTGGA 58.077 43.478 0.00 0.00 0.00 4.02
5541 6458 4.702612 TCTGAAGTGATAGAGTGAGTGGAC 59.297 45.833 0.00 0.00 0.00 4.02
5542 6459 4.407365 TGAAGTGATAGAGTGAGTGGACA 58.593 43.478 0.00 0.00 0.00 4.02
5543 6460 5.019470 TGAAGTGATAGAGTGAGTGGACAT 58.981 41.667 0.00 0.00 0.00 3.06
5544 6461 6.187682 TGAAGTGATAGAGTGAGTGGACATA 58.812 40.000 0.00 0.00 0.00 2.29
5545 6462 6.319911 TGAAGTGATAGAGTGAGTGGACATAG 59.680 42.308 0.00 0.00 0.00 2.23
5546 6463 5.761205 AGTGATAGAGTGAGTGGACATAGT 58.239 41.667 0.00 0.00 0.00 2.12
5547 6464 6.191315 AGTGATAGAGTGAGTGGACATAGTT 58.809 40.000 0.00 0.00 0.00 2.24
5548 6465 6.665680 AGTGATAGAGTGAGTGGACATAGTTT 59.334 38.462 0.00 0.00 0.00 2.66
5549 6466 6.754209 GTGATAGAGTGAGTGGACATAGTTTG 59.246 42.308 0.00 0.00 0.00 2.93
5550 6467 6.437477 TGATAGAGTGAGTGGACATAGTTTGT 59.563 38.462 0.00 0.00 42.79 2.83
5551 6468 4.887748 AGAGTGAGTGGACATAGTTTGTG 58.112 43.478 0.00 0.00 39.18 3.33
5552 6469 4.345257 AGAGTGAGTGGACATAGTTTGTGT 59.655 41.667 0.00 0.00 39.18 3.72
5553 6470 4.380531 AGTGAGTGGACATAGTTTGTGTG 58.619 43.478 0.00 0.00 39.18 3.82
5554 6471 3.058914 GTGAGTGGACATAGTTTGTGTGC 60.059 47.826 0.00 0.00 39.18 4.57
5555 6472 3.138304 GAGTGGACATAGTTTGTGTGCA 58.862 45.455 0.00 0.00 44.08 4.57
5556 6473 3.550820 AGTGGACATAGTTTGTGTGCAA 58.449 40.909 2.09 0.00 46.92 4.08
5557 6474 3.565482 AGTGGACATAGTTTGTGTGCAAG 59.435 43.478 2.09 0.00 46.92 4.01
5558 6475 3.563808 GTGGACATAGTTTGTGTGCAAGA 59.436 43.478 2.09 0.00 46.92 3.02
5559 6476 4.036262 GTGGACATAGTTTGTGTGCAAGAA 59.964 41.667 2.09 0.00 46.92 2.52
5560 6477 4.642437 TGGACATAGTTTGTGTGCAAGAAA 59.358 37.500 0.00 0.00 43.47 2.52
5561 6478 4.976116 GGACATAGTTTGTGTGCAAGAAAC 59.024 41.667 11.20 11.20 39.18 2.78
5562 6479 5.221048 GGACATAGTTTGTGTGCAAGAAACT 60.221 40.000 19.87 19.87 41.60 2.66
5563 6480 6.017440 GGACATAGTTTGTGTGCAAGAAACTA 60.017 38.462 21.74 21.74 43.06 2.24
5564 6481 7.328277 ACATAGTTTGTGTGCAAGAAACTAA 57.672 32.000 22.57 13.48 42.49 2.24
5565 6482 7.417612 ACATAGTTTGTGTGCAAGAAACTAAG 58.582 34.615 22.57 21.08 42.49 2.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.067425 CCATACCAAACCACGTCTCGA 60.067 52.381 0.00 0.00 0.00 4.04
1 2 1.067425 TCCATACCAAACCACGTCTCG 60.067 52.381 0.00 0.00 0.00 4.04
2 3 2.344025 GTCCATACCAAACCACGTCTC 58.656 52.381 0.00 0.00 0.00 3.36
3 4 1.337447 CGTCCATACCAAACCACGTCT 60.337 52.381 0.00 0.00 0.00 4.18
4 5 1.073177 CGTCCATACCAAACCACGTC 58.927 55.000 0.00 0.00 0.00 4.34
5 6 0.320946 CCGTCCATACCAAACCACGT 60.321 55.000 0.00 0.00 0.00 4.49
6 7 1.641123 GCCGTCCATACCAAACCACG 61.641 60.000 0.00 0.00 0.00 4.94
7 8 1.310216 GGCCGTCCATACCAAACCAC 61.310 60.000 0.00 0.00 0.00 4.16
8 9 1.001887 GGCCGTCCATACCAAACCA 60.002 57.895 0.00 0.00 0.00 3.67
9 10 2.110352 CGGCCGTCCATACCAAACC 61.110 63.158 19.50 0.00 0.00 3.27
10 11 2.110352 CCGGCCGTCCATACCAAAC 61.110 63.158 26.12 0.00 0.00 2.93
11 12 2.269562 CCGGCCGTCCATACCAAA 59.730 61.111 26.12 0.00 0.00 3.28
12 13 3.788145 CCCGGCCGTCCATACCAA 61.788 66.667 26.12 0.00 0.00 3.67
29 30 4.767255 CTCCTCACTGCGCACCCC 62.767 72.222 5.66 0.00 0.00 4.95
30 31 4.767255 CCTCCTCACTGCGCACCC 62.767 72.222 5.66 0.00 0.00 4.61
42 43 3.751049 TATTCTCCGGCCGCCTCCT 62.751 63.158 22.85 6.29 0.00 3.69
43 44 3.227792 CTATTCTCCGGCCGCCTCC 62.228 68.421 22.85 0.00 0.00 4.30
44 45 2.340443 CTATTCTCCGGCCGCCTC 59.660 66.667 22.85 0.00 0.00 4.70
45 46 2.444140 ACTATTCTCCGGCCGCCT 60.444 61.111 22.85 3.88 0.00 5.52
46 47 2.280186 CACTATTCTCCGGCCGCC 60.280 66.667 22.85 0.00 0.00 6.13
47 48 2.280186 CCACTATTCTCCGGCCGC 60.280 66.667 22.85 0.00 0.00 6.53
48 49 2.280186 GCCACTATTCTCCGGCCG 60.280 66.667 21.04 21.04 38.67 6.13
49 50 2.280186 CGCCACTATTCTCCGGCC 60.280 66.667 0.00 0.00 41.71 6.13
50 51 2.280186 CCGCCACTATTCTCCGGC 60.280 66.667 0.00 0.00 41.30 6.13
51 52 2.280186 GCCGCCACTATTCTCCGG 60.280 66.667 0.00 0.00 41.72 5.14
52 53 2.658593 CGCCGCCACTATTCTCCG 60.659 66.667 0.00 0.00 0.00 4.63
53 54 2.967615 GCGCCGCCACTATTCTCC 60.968 66.667 0.00 0.00 0.00 3.71
91 92 2.670148 AATGCGTCCACCCCCTCTC 61.670 63.158 0.00 0.00 0.00 3.20
92 93 2.610859 AATGCGTCCACCCCCTCT 60.611 61.111 0.00 0.00 0.00 3.69
93 94 2.438434 CAATGCGTCCACCCCCTC 60.438 66.667 0.00 0.00 0.00 4.30
94 95 4.047125 CCAATGCGTCCACCCCCT 62.047 66.667 0.00 0.00 0.00 4.79
95 96 3.577334 TTCCAATGCGTCCACCCCC 62.577 63.158 0.00 0.00 0.00 5.40
96 97 2.034999 TTCCAATGCGTCCACCCC 59.965 61.111 0.00 0.00 0.00 4.95
97 98 1.303317 ACTTCCAATGCGTCCACCC 60.303 57.895 0.00 0.00 0.00 4.61
98 99 0.605319 TCACTTCCAATGCGTCCACC 60.605 55.000 0.00 0.00 0.00 4.61
99 100 1.197721 CTTCACTTCCAATGCGTCCAC 59.802 52.381 0.00 0.00 0.00 4.02
100 101 1.522668 CTTCACTTCCAATGCGTCCA 58.477 50.000 0.00 0.00 0.00 4.02
101 102 0.804989 CCTTCACTTCCAATGCGTCC 59.195 55.000 0.00 0.00 0.00 4.79
102 103 0.804989 CCCTTCACTTCCAATGCGTC 59.195 55.000 0.00 0.00 0.00 5.19
103 104 0.400213 TCCCTTCACTTCCAATGCGT 59.600 50.000 0.00 0.00 0.00 5.24
104 105 0.804989 GTCCCTTCACTTCCAATGCG 59.195 55.000 0.00 0.00 0.00 4.73
105 106 1.815003 CAGTCCCTTCACTTCCAATGC 59.185 52.381 0.00 0.00 0.00 3.56
106 107 2.224867 ACCAGTCCCTTCACTTCCAATG 60.225 50.000 0.00 0.00 0.00 2.82
107 108 2.065799 ACCAGTCCCTTCACTTCCAAT 58.934 47.619 0.00 0.00 0.00 3.16
108 109 1.518367 ACCAGTCCCTTCACTTCCAA 58.482 50.000 0.00 0.00 0.00 3.53
109 110 2.257207 CTACCAGTCCCTTCACTTCCA 58.743 52.381 0.00 0.00 0.00 3.53
110 111 2.028020 CACTACCAGTCCCTTCACTTCC 60.028 54.545 0.00 0.00 0.00 3.46
111 112 2.633481 ACACTACCAGTCCCTTCACTTC 59.367 50.000 0.00 0.00 0.00 3.01
112 113 2.633481 GACACTACCAGTCCCTTCACTT 59.367 50.000 0.00 0.00 0.00 3.16
113 114 2.249139 GACACTACCAGTCCCTTCACT 58.751 52.381 0.00 0.00 0.00 3.41
114 115 2.745515 GACACTACCAGTCCCTTCAC 57.254 55.000 0.00 0.00 0.00 3.18
121 122 1.546476 CTGTCAGGGACACTACCAGTC 59.454 57.143 0.00 0.00 37.67 3.51
122 123 1.633774 CTGTCAGGGACACTACCAGT 58.366 55.000 0.00 0.00 37.67 4.00
123 124 0.898320 CCTGTCAGGGACACTACCAG 59.102 60.000 11.46 0.00 37.67 4.00
124 125 1.192146 GCCTGTCAGGGACACTACCA 61.192 60.000 20.72 0.00 37.67 3.25
125 126 1.597461 GCCTGTCAGGGACACTACC 59.403 63.158 20.72 0.00 37.67 3.18
126 127 1.597461 GGCCTGTCAGGGACACTAC 59.403 63.158 20.72 1.51 37.67 2.73
127 128 1.982395 CGGCCTGTCAGGGACACTA 60.982 63.158 20.72 0.00 37.67 2.74
128 129 3.314331 CGGCCTGTCAGGGACACT 61.314 66.667 20.72 0.00 37.67 3.55
129 130 4.394712 CCGGCCTGTCAGGGACAC 62.395 72.222 20.72 3.37 37.67 3.67
144 145 4.760047 CTTGTCCTCCCGTGGCCG 62.760 72.222 0.00 0.00 0.00 6.13
145 146 4.410400 CCTTGTCCTCCCGTGGCC 62.410 72.222 0.00 0.00 0.00 5.36
146 147 4.410400 CCCTTGTCCTCCCGTGGC 62.410 72.222 0.00 0.00 0.00 5.01
147 148 4.410400 GCCCTTGTCCTCCCGTGG 62.410 72.222 0.00 0.00 0.00 4.94
148 149 4.760047 CGCCCTTGTCCTCCCGTG 62.760 72.222 0.00 0.00 0.00 4.94
150 151 4.760047 CACGCCCTTGTCCTCCCG 62.760 72.222 0.00 0.00 0.00 5.14
153 154 4.681978 ACGCACGCCCTTGTCCTC 62.682 66.667 0.00 0.00 0.00 3.71
154 155 4.681978 GACGCACGCCCTTGTCCT 62.682 66.667 0.00 0.00 0.00 3.85
159 160 4.719369 GACTCGACGCACGCCCTT 62.719 66.667 0.00 0.00 42.26 3.95
178 179 4.814294 AAGGGACATCGCGCGGAC 62.814 66.667 31.69 14.87 0.00 4.79
179 180 4.077184 AAAGGGACATCGCGCGGA 62.077 61.111 31.69 17.27 0.00 5.54
180 181 3.564027 GAAAGGGACATCGCGCGG 61.564 66.667 31.69 17.77 0.00 6.46
181 182 2.813474 TGAAAGGGACATCGCGCG 60.813 61.111 26.76 26.76 0.00 6.86
182 183 2.750888 GGTGAAAGGGACATCGCGC 61.751 63.158 0.00 0.00 0.00 6.86
183 184 2.106683 GGGTGAAAGGGACATCGCG 61.107 63.158 0.00 0.00 0.00 5.87
184 185 1.749258 GGGGTGAAAGGGACATCGC 60.749 63.158 0.00 0.00 0.00 4.58
185 186 0.037590 TTGGGGTGAAAGGGACATCG 59.962 55.000 0.00 0.00 0.00 3.84
186 187 1.893137 GTTTGGGGTGAAAGGGACATC 59.107 52.381 0.00 0.00 0.00 3.06
187 188 1.503347 AGTTTGGGGTGAAAGGGACAT 59.497 47.619 0.00 0.00 0.00 3.06
188 189 0.930726 AGTTTGGGGTGAAAGGGACA 59.069 50.000 0.00 0.00 0.00 4.02
189 190 1.617322 GAGTTTGGGGTGAAAGGGAC 58.383 55.000 0.00 0.00 0.00 4.46
190 191 0.109723 CGAGTTTGGGGTGAAAGGGA 59.890 55.000 0.00 0.00 0.00 4.20
191 192 0.893727 CCGAGTTTGGGGTGAAAGGG 60.894 60.000 0.00 0.00 0.00 3.95
192 193 1.524008 GCCGAGTTTGGGGTGAAAGG 61.524 60.000 0.00 0.00 0.00 3.11
193 194 1.852067 CGCCGAGTTTGGGGTGAAAG 61.852 60.000 0.00 0.00 37.20 2.62
194 195 1.894756 CGCCGAGTTTGGGGTGAAA 60.895 57.895 0.00 0.00 37.20 2.69
195 196 2.281208 CGCCGAGTTTGGGGTGAA 60.281 61.111 0.00 0.00 37.20 3.18
198 199 4.572571 TTGCGCCGAGTTTGGGGT 62.573 61.111 4.18 0.00 43.50 4.95
199 200 3.737172 CTTGCGCCGAGTTTGGGG 61.737 66.667 4.18 0.00 44.36 4.96
200 201 2.070654 AAACTTGCGCCGAGTTTGGG 62.071 55.000 27.70 3.91 43.80 4.12
201 202 1.358759 AAACTTGCGCCGAGTTTGG 59.641 52.632 27.70 5.23 43.80 3.28
203 204 0.248458 CACAAACTTGCGCCGAGTTT 60.248 50.000 24.71 24.71 45.62 2.66
204 205 1.355210 CACAAACTTGCGCCGAGTT 59.645 52.632 17.47 17.47 39.51 3.01
205 206 3.022287 CACAAACTTGCGCCGAGT 58.978 55.556 4.18 6.29 0.00 4.18
206 207 2.427410 GCACAAACTTGCGCCGAG 60.427 61.111 4.18 5.52 31.51 4.63
212 213 0.037975 CATCCCCAGCACAAACTTGC 60.038 55.000 0.00 0.00 43.34 4.01
213 214 0.604578 CCATCCCCAGCACAAACTTG 59.395 55.000 0.00 0.00 0.00 3.16
214 215 0.542702 CCCATCCCCAGCACAAACTT 60.543 55.000 0.00 0.00 0.00 2.66
215 216 1.077265 CCCATCCCCAGCACAAACT 59.923 57.895 0.00 0.00 0.00 2.66
216 217 0.831711 AACCCATCCCCAGCACAAAC 60.832 55.000 0.00 0.00 0.00 2.93
217 218 0.831288 CAACCCATCCCCAGCACAAA 60.831 55.000 0.00 0.00 0.00 2.83
218 219 1.228831 CAACCCATCCCCAGCACAA 60.229 57.895 0.00 0.00 0.00 3.33
219 220 1.724148 TTCAACCCATCCCCAGCACA 61.724 55.000 0.00 0.00 0.00 4.57
220 221 0.541764 TTTCAACCCATCCCCAGCAC 60.542 55.000 0.00 0.00 0.00 4.40
221 222 0.189574 TTTTCAACCCATCCCCAGCA 59.810 50.000 0.00 0.00 0.00 4.41
222 223 0.608130 GTTTTCAACCCATCCCCAGC 59.392 55.000 0.00 0.00 0.00 4.85
223 224 0.887933 CGTTTTCAACCCATCCCCAG 59.112 55.000 0.00 0.00 0.00 4.45
224 225 0.540830 CCGTTTTCAACCCATCCCCA 60.541 55.000 0.00 0.00 0.00 4.96
225 226 0.251430 TCCGTTTTCAACCCATCCCC 60.251 55.000 0.00 0.00 0.00 4.81
226 227 0.885879 GTCCGTTTTCAACCCATCCC 59.114 55.000 0.00 0.00 0.00 3.85
227 228 0.519961 CGTCCGTTTTCAACCCATCC 59.480 55.000 0.00 0.00 0.00 3.51
228 229 1.515081 TCGTCCGTTTTCAACCCATC 58.485 50.000 0.00 0.00 0.00 3.51
229 230 1.970092 TTCGTCCGTTTTCAACCCAT 58.030 45.000 0.00 0.00 0.00 4.00
230 231 1.747709 TTTCGTCCGTTTTCAACCCA 58.252 45.000 0.00 0.00 0.00 4.51
231 232 2.551032 AGATTTCGTCCGTTTTCAACCC 59.449 45.455 0.00 0.00 0.00 4.11
232 233 3.551551 CAGATTTCGTCCGTTTTCAACC 58.448 45.455 0.00 0.00 0.00 3.77
233 234 3.249080 TCCAGATTTCGTCCGTTTTCAAC 59.751 43.478 0.00 0.00 0.00 3.18
234 235 3.249080 GTCCAGATTTCGTCCGTTTTCAA 59.751 43.478 0.00 0.00 0.00 2.69
235 236 2.803956 GTCCAGATTTCGTCCGTTTTCA 59.196 45.455 0.00 0.00 0.00 2.69
236 237 2.803956 TGTCCAGATTTCGTCCGTTTTC 59.196 45.455 0.00 0.00 0.00 2.29
237 238 2.841215 TGTCCAGATTTCGTCCGTTTT 58.159 42.857 0.00 0.00 0.00 2.43
238 239 2.536761 TGTCCAGATTTCGTCCGTTT 57.463 45.000 0.00 0.00 0.00 3.60
239 240 2.762535 ATGTCCAGATTTCGTCCGTT 57.237 45.000 0.00 0.00 0.00 4.44
240 241 2.742053 CAAATGTCCAGATTTCGTCCGT 59.258 45.455 0.00 0.00 0.00 4.69
241 242 2.742053 ACAAATGTCCAGATTTCGTCCG 59.258 45.455 0.00 0.00 0.00 4.79
242 243 4.342352 GACAAATGTCCAGATTTCGTCC 57.658 45.455 2.04 0.00 39.07 4.79
254 255 1.471287 GGCCCTAAACGGACAAATGTC 59.529 52.381 4.96 4.96 44.04 3.06
255 256 1.541379 GGCCCTAAACGGACAAATGT 58.459 50.000 0.00 0.00 33.16 2.71
256 257 0.450184 CGGCCCTAAACGGACAAATG 59.550 55.000 0.00 0.00 33.16 2.32
257 258 1.310216 GCGGCCCTAAACGGACAAAT 61.310 55.000 0.00 0.00 33.16 2.32
258 259 1.967494 GCGGCCCTAAACGGACAAA 60.967 57.895 0.00 0.00 33.16 2.83
259 260 2.358984 GCGGCCCTAAACGGACAA 60.359 61.111 0.00 0.00 33.16 3.18
260 261 4.745751 CGCGGCCCTAAACGGACA 62.746 66.667 0.00 0.00 33.16 4.02
265 266 4.454717 CAACGCGCGGCCCTAAAC 62.455 66.667 35.22 0.00 0.00 2.01
276 277 4.891727 ATAGCTCGGCCCAACGCG 62.892 66.667 3.53 3.53 38.94 6.01
277 278 2.513897 AATAGCTCGGCCCAACGC 60.514 61.111 0.00 0.00 0.00 4.84
278 279 2.237751 CGAATAGCTCGGCCCAACG 61.238 63.158 0.00 0.00 44.20 4.10
279 280 3.719214 CGAATAGCTCGGCCCAAC 58.281 61.111 0.00 0.00 44.20 3.77
287 288 2.287487 GGGTAGAACGGACGAATAGCTC 60.287 54.545 0.00 0.00 0.00 4.09
288 289 1.680207 GGGTAGAACGGACGAATAGCT 59.320 52.381 0.00 0.00 0.00 3.32
289 290 1.269465 GGGGTAGAACGGACGAATAGC 60.269 57.143 0.00 0.00 0.00 2.97
290 291 2.026641 TGGGGTAGAACGGACGAATAG 58.973 52.381 0.00 0.00 0.00 1.73
291 292 2.142356 TGGGGTAGAACGGACGAATA 57.858 50.000 0.00 0.00 0.00 1.75
292 293 1.269012 TTGGGGTAGAACGGACGAAT 58.731 50.000 0.00 0.00 0.00 3.34
293 294 1.047002 TTTGGGGTAGAACGGACGAA 58.953 50.000 0.00 0.00 0.00 3.85
294 295 1.066716 CATTTGGGGTAGAACGGACGA 60.067 52.381 0.00 0.00 0.00 4.20
295 296 1.066716 TCATTTGGGGTAGAACGGACG 60.067 52.381 0.00 0.00 0.00 4.79
296 297 2.745821 GTTCATTTGGGGTAGAACGGAC 59.254 50.000 0.00 0.00 32.17 4.79
297 298 3.062122 GTTCATTTGGGGTAGAACGGA 57.938 47.619 0.00 0.00 32.17 4.69
300 301 2.095415 GTGCGTTCATTTGGGGTAGAAC 60.095 50.000 0.00 0.00 37.57 3.01
301 302 2.156098 GTGCGTTCATTTGGGGTAGAA 58.844 47.619 0.00 0.00 0.00 2.10
302 303 1.612199 GGTGCGTTCATTTGGGGTAGA 60.612 52.381 0.00 0.00 0.00 2.59
303 304 0.808755 GGTGCGTTCATTTGGGGTAG 59.191 55.000 0.00 0.00 0.00 3.18
304 305 0.609681 GGGTGCGTTCATTTGGGGTA 60.610 55.000 0.00 0.00 0.00 3.69
305 306 1.906333 GGGTGCGTTCATTTGGGGT 60.906 57.895 0.00 0.00 0.00 4.95
306 307 2.969827 GGGTGCGTTCATTTGGGG 59.030 61.111 0.00 0.00 0.00 4.96
307 308 1.519751 TTCGGGTGCGTTCATTTGGG 61.520 55.000 0.00 0.00 0.00 4.12
308 309 0.525761 ATTCGGGTGCGTTCATTTGG 59.474 50.000 0.00 0.00 0.00 3.28
309 310 2.675844 TCTATTCGGGTGCGTTCATTTG 59.324 45.455 0.00 0.00 0.00 2.32
310 311 2.980568 TCTATTCGGGTGCGTTCATTT 58.019 42.857 0.00 0.00 0.00 2.32
311 312 2.684001 TCTATTCGGGTGCGTTCATT 57.316 45.000 0.00 0.00 0.00 2.57
312 313 2.684001 TTCTATTCGGGTGCGTTCAT 57.316 45.000 0.00 0.00 0.00 2.57
313 314 2.276201 CATTCTATTCGGGTGCGTTCA 58.724 47.619 0.00 0.00 0.00 3.18
314 315 1.597663 CCATTCTATTCGGGTGCGTTC 59.402 52.381 0.00 0.00 0.00 3.95
315 316 1.663695 CCATTCTATTCGGGTGCGTT 58.336 50.000 0.00 0.00 0.00 4.84
316 317 0.179056 CCCATTCTATTCGGGTGCGT 60.179 55.000 0.00 0.00 35.03 5.24
317 318 0.884704 CCCCATTCTATTCGGGTGCG 60.885 60.000 0.00 0.00 38.40 5.34
318 319 0.537371 CCCCCATTCTATTCGGGTGC 60.537 60.000 0.00 0.00 38.40 5.01
319 320 0.537371 GCCCCCATTCTATTCGGGTG 60.537 60.000 0.00 0.00 38.40 4.61
320 321 1.844130 GCCCCCATTCTATTCGGGT 59.156 57.895 0.00 0.00 38.40 5.28
321 322 1.302511 CGCCCCCATTCTATTCGGG 60.303 63.158 0.00 0.00 39.92 5.14
322 323 0.884704 CACGCCCCCATTCTATTCGG 60.885 60.000 0.00 0.00 0.00 4.30
323 324 1.507141 GCACGCCCCCATTCTATTCG 61.507 60.000 0.00 0.00 0.00 3.34
324 325 1.507141 CGCACGCCCCCATTCTATTC 61.507 60.000 0.00 0.00 0.00 1.75
325 326 1.525995 CGCACGCCCCCATTCTATT 60.526 57.895 0.00 0.00 0.00 1.73
326 327 2.111043 CGCACGCCCCCATTCTAT 59.889 61.111 0.00 0.00 0.00 1.98
327 328 4.849310 GCGCACGCCCCCATTCTA 62.849 66.667 0.30 0.00 34.56 2.10
329 330 4.849310 TAGCGCACGCCCCCATTC 62.849 66.667 11.47 0.00 43.17 2.67
330 331 4.856801 CTAGCGCACGCCCCCATT 62.857 66.667 11.47 0.00 43.17 3.16
334 335 4.452733 AACTCTAGCGCACGCCCC 62.453 66.667 11.47 0.00 43.17 5.80
335 336 3.188786 CAACTCTAGCGCACGCCC 61.189 66.667 11.47 0.00 43.17 6.13
336 337 3.188786 CCAACTCTAGCGCACGCC 61.189 66.667 11.47 0.00 43.17 5.68
337 338 3.854459 GCCAACTCTAGCGCACGC 61.854 66.667 11.47 6.99 42.33 5.34
338 339 3.188786 GGCCAACTCTAGCGCACG 61.189 66.667 11.47 0.00 0.00 5.34
339 340 0.108329 TAAGGCCAACTCTAGCGCAC 60.108 55.000 11.47 0.00 0.00 5.34
340 341 0.830648 ATAAGGCCAACTCTAGCGCA 59.169 50.000 11.47 0.00 0.00 6.09
341 342 2.036089 AGTATAAGGCCAACTCTAGCGC 59.964 50.000 5.01 0.00 0.00 5.92
342 343 4.051922 CAAGTATAAGGCCAACTCTAGCG 58.948 47.826 5.01 0.00 0.00 4.26
343 344 3.810386 GCAAGTATAAGGCCAACTCTAGC 59.190 47.826 5.01 4.92 0.00 3.42
344 345 4.811557 GTGCAAGTATAAGGCCAACTCTAG 59.188 45.833 5.01 0.00 0.00 2.43
345 346 4.469945 AGTGCAAGTATAAGGCCAACTCTA 59.530 41.667 5.01 0.00 0.00 2.43
346 347 3.264450 AGTGCAAGTATAAGGCCAACTCT 59.736 43.478 5.01 0.00 0.00 3.24
347 348 3.610911 AGTGCAAGTATAAGGCCAACTC 58.389 45.455 5.01 0.00 0.00 3.01
348 349 3.721087 AGTGCAAGTATAAGGCCAACT 57.279 42.857 5.01 0.00 0.00 3.16
349 350 4.335594 CCTAAGTGCAAGTATAAGGCCAAC 59.664 45.833 5.01 0.00 0.00 3.77
350 351 4.226394 TCCTAAGTGCAAGTATAAGGCCAA 59.774 41.667 5.01 0.00 0.00 4.52
351 352 3.778075 TCCTAAGTGCAAGTATAAGGCCA 59.222 43.478 5.01 0.00 0.00 5.36
352 353 4.417426 TCCTAAGTGCAAGTATAAGGCC 57.583 45.455 0.00 0.00 0.00 5.19
353 354 5.859495 AGATCCTAAGTGCAAGTATAAGGC 58.141 41.667 0.00 0.00 0.00 4.35
384 385 7.996644 AGTTTCTACTAGGACCATGTTGAAAAA 59.003 33.333 19.36 5.39 37.26 1.94
407 408 5.934625 ACGCTCAAGATACTTCATCAAAGTT 59.065 36.000 0.00 0.00 46.26 2.66
413 414 5.822278 TCTACACGCTCAAGATACTTCATC 58.178 41.667 0.00 0.00 0.00 2.92
418 419 6.694877 TTGTATCTACACGCTCAAGATACT 57.305 37.500 19.76 0.00 46.41 2.12
421 422 4.806247 GCTTTGTATCTACACGCTCAAGAT 59.194 41.667 3.91 0.00 35.64 2.40
423 424 3.926527 TGCTTTGTATCTACACGCTCAAG 59.073 43.478 10.39 4.34 35.64 3.02
426 427 4.146616 CGTATGCTTTGTATCTACACGCTC 59.853 45.833 10.39 3.71 35.64 5.03
428 429 3.795101 ACGTATGCTTTGTATCTACACGC 59.205 43.478 0.00 4.65 35.64 5.34
435 436 7.690228 TGTTATTTGGACGTATGCTTTGTATC 58.310 34.615 0.00 0.00 0.00 2.24
439 440 6.468956 GTGATGTTATTTGGACGTATGCTTTG 59.531 38.462 0.00 0.00 0.00 2.77
440 441 6.551736 GTGATGTTATTTGGACGTATGCTTT 58.448 36.000 0.00 0.00 0.00 3.51
444 445 5.276678 GGTCGTGATGTTATTTGGACGTATG 60.277 44.000 0.00 0.00 0.00 2.39
494 495 9.429359 CTCTATTGGTACATGTCTGGATAAATC 57.571 37.037 0.00 0.00 39.30 2.17
592 621 9.914834 AATTTGACCATAGGTTTAACTATAGCA 57.085 29.630 0.00 0.00 35.25 3.49
621 650 2.300956 TGCCCTTGCATTTTAGGTCA 57.699 45.000 1.58 0.00 44.23 4.02
639 669 3.243975 ACTCCGGGTTTACAAGTACAGTG 60.244 47.826 0.00 0.00 0.00 3.66
642 672 4.527816 ACATACTCCGGGTTTACAAGTACA 59.472 41.667 0.00 0.00 0.00 2.90
667 697 5.092781 GCACGTTTATGGGAAAGTTGTATG 58.907 41.667 0.00 0.00 0.00 2.39
668 698 5.007682 AGCACGTTTATGGGAAAGTTGTAT 58.992 37.500 0.00 0.00 0.00 2.29
699 775 6.491403 TCTCCTTCTTTTCTTCCCAAATTCTG 59.509 38.462 0.00 0.00 0.00 3.02
729 805 1.618837 GGGCCTGTTTCTTTCCCTTTC 59.381 52.381 0.84 0.00 34.19 2.62
918 1003 2.331098 TTTTTCTGCGCGCCTGTG 59.669 55.556 30.77 15.99 0.00 3.66
1218 1311 2.721167 CGCGAAGGACATCCCCAGA 61.721 63.158 0.00 0.00 36.42 3.86
1274 1368 0.886490 AGGAACAACAGCAGAAGCCG 60.886 55.000 0.00 0.00 43.56 5.52
1346 1440 0.036732 TGCTCGAAGGCAACAATCCT 59.963 50.000 0.00 0.00 39.43 3.24
1368 1462 0.106819 GCAATCAGAGGGACCATGCT 60.107 55.000 0.00 0.00 32.89 3.79
1369 1463 0.106819 AGCAATCAGAGGGACCATGC 60.107 55.000 0.00 0.00 34.73 4.06
1371 1465 4.803329 AATTAGCAATCAGAGGGACCAT 57.197 40.909 0.00 0.00 0.00 3.55
1372 1466 4.591321 AAATTAGCAATCAGAGGGACCA 57.409 40.909 0.00 0.00 0.00 4.02
1373 1467 5.529060 CAGTAAATTAGCAATCAGAGGGACC 59.471 44.000 0.00 0.00 0.00 4.46
1375 1469 6.115446 CACAGTAAATTAGCAATCAGAGGGA 58.885 40.000 0.00 0.00 0.00 4.20
1376 1470 5.882557 ACACAGTAAATTAGCAATCAGAGGG 59.117 40.000 0.00 0.00 0.00 4.30
1377 1471 6.992063 ACACAGTAAATTAGCAATCAGAGG 57.008 37.500 0.00 0.00 0.00 3.69
1378 1472 7.810658 ACAACACAGTAAATTAGCAATCAGAG 58.189 34.615 0.00 0.00 0.00 3.35
1379 1473 7.744087 ACAACACAGTAAATTAGCAATCAGA 57.256 32.000 0.00 0.00 0.00 3.27
1380 1474 7.326789 CCAACAACACAGTAAATTAGCAATCAG 59.673 37.037 0.00 0.00 0.00 2.90
1381 1475 7.144661 CCAACAACACAGTAAATTAGCAATCA 58.855 34.615 0.00 0.00 0.00 2.57
1427 1522 0.319211 TTACAGGTGCGTTCCGAGTG 60.319 55.000 0.00 0.00 0.00 3.51
1432 1527 1.530323 ATTGGTTACAGGTGCGTTCC 58.470 50.000 0.00 0.00 0.00 3.62
1436 1531 1.529226 TCCAATTGGTTACAGGTGCG 58.471 50.000 23.76 0.00 36.34 5.34
1438 1533 2.166254 GGCATCCAATTGGTTACAGGTG 59.834 50.000 23.76 12.59 36.34 4.00
1489 1584 9.845740 TGAAGCTGCAAATATCCTACTAAATTA 57.154 29.630 1.02 0.00 0.00 1.40
1495 1590 6.359804 TCATTGAAGCTGCAAATATCCTACT 58.640 36.000 12.19 0.00 0.00 2.57
1502 1597 6.207221 TGAGAACTTCATTGAAGCTGCAAATA 59.793 34.615 23.22 0.00 42.79 1.40
1513 1608 4.263068 GGGAACTCCTGAGAACTTCATTGA 60.263 45.833 0.22 0.00 34.68 2.57
1514 1609 4.006319 GGGAACTCCTGAGAACTTCATTG 58.994 47.826 0.22 0.00 34.68 2.82
1517 1613 2.977808 AGGGAACTCCTGAGAACTTCA 58.022 47.619 0.22 0.00 46.07 3.02
1578 1675 6.693342 CCGTATCTAATGTTTCTGAACGTTC 58.307 40.000 21.42 21.42 42.47 3.95
1584 1681 3.382227 TCCGCCGTATCTAATGTTTCTGA 59.618 43.478 0.00 0.00 0.00 3.27
1595 1692 3.022406 ACTAGAAACTTCCGCCGTATCT 58.978 45.455 0.00 0.00 0.00 1.98
1603 1700 5.277828 CCCACAAAAGAACTAGAAACTTCCG 60.278 44.000 0.00 0.00 0.00 4.30
1608 1705 4.466827 TCCCCCACAAAAGAACTAGAAAC 58.533 43.478 0.00 0.00 0.00 2.78
1623 1720 5.647589 GAAAAGAATATCGTTTTCCCCCAC 58.352 41.667 9.75 0.00 36.89 4.61
1624 1721 4.396790 CGAAAAGAATATCGTTTTCCCCCA 59.603 41.667 13.17 0.00 38.79 4.96
1625 1722 4.916870 CGAAAAGAATATCGTTTTCCCCC 58.083 43.478 13.17 0.00 38.79 5.40
1634 1731 6.183360 TGGATTGGAACACGAAAAGAATATCG 60.183 38.462 0.00 0.00 44.33 2.92
1635 1732 7.083875 TGGATTGGAACACGAAAAGAATATC 57.916 36.000 0.00 0.00 39.29 1.63
1636 1733 6.095440 CCTGGATTGGAACACGAAAAGAATAT 59.905 38.462 0.00 0.00 39.29 1.28
1637 1734 5.414454 CCTGGATTGGAACACGAAAAGAATA 59.586 40.000 0.00 0.00 39.29 1.75
1638 1735 4.218417 CCTGGATTGGAACACGAAAAGAAT 59.782 41.667 0.00 0.00 39.29 2.40
1639 1736 3.568007 CCTGGATTGGAACACGAAAAGAA 59.432 43.478 0.00 0.00 39.29 2.52
1640 1737 3.146066 CCTGGATTGGAACACGAAAAGA 58.854 45.455 0.00 0.00 39.29 2.52
1641 1738 2.228822 CCCTGGATTGGAACACGAAAAG 59.771 50.000 0.00 0.00 39.29 2.27
1642 1739 2.235016 CCCTGGATTGGAACACGAAAA 58.765 47.619 0.00 0.00 39.29 2.29
1643 1740 1.144093 ACCCTGGATTGGAACACGAAA 59.856 47.619 0.00 0.00 39.29 3.46
1644 1741 0.768622 ACCCTGGATTGGAACACGAA 59.231 50.000 0.00 0.00 39.29 3.85
1645 1742 0.768622 AACCCTGGATTGGAACACGA 59.231 50.000 0.00 0.00 39.29 4.35
1657 1755 3.966543 AAGACGGCCCAACCCTGG 61.967 66.667 0.00 0.00 43.10 4.45
1658 1756 2.672996 CAAGACGGCCCAACCCTG 60.673 66.667 0.00 0.00 33.26 4.45
1660 1758 2.400269 TACACAAGACGGCCCAACCC 62.400 60.000 0.00 0.00 33.26 4.11
1661 1759 0.322187 ATACACAAGACGGCCCAACC 60.322 55.000 0.00 0.00 0.00 3.77
1662 1760 1.530323 AATACACAAGACGGCCCAAC 58.470 50.000 0.00 0.00 0.00 3.77
1663 1761 1.883275 CAAATACACAAGACGGCCCAA 59.117 47.619 0.00 0.00 0.00 4.12
1664 1762 1.202830 ACAAATACACAAGACGGCCCA 60.203 47.619 0.00 0.00 0.00 5.36
1665 1763 1.199097 CACAAATACACAAGACGGCCC 59.801 52.381 0.00 0.00 0.00 5.80
1666 1764 1.401018 GCACAAATACACAAGACGGCC 60.401 52.381 0.00 0.00 0.00 6.13
1672 1774 5.626543 GTCATGAACTGCACAAATACACAAG 59.373 40.000 0.00 0.00 0.00 3.16
1696 1798 7.201513 CCCAAGCGGTGTATTTTATTCAAAATG 60.202 37.037 5.77 0.00 42.85 2.32
1708 1810 1.677633 GTGGCCCAAGCGGTGTATT 60.678 57.895 0.00 0.00 41.24 1.89
1723 1825 2.287547 CCACAATTGTTCTGAACGGTGG 60.288 50.000 25.05 25.05 36.42 4.61
1760 1862 2.028203 CCACCCATTTAACCTTTGCCTG 60.028 50.000 0.00 0.00 0.00 4.85
1796 1899 8.980143 AAACCACATTAAAACCAGAATAATCG 57.020 30.769 0.00 0.00 0.00 3.34
1914 2017 5.391312 TCAGGCCTTCTTTAGCATTTTTC 57.609 39.130 0.00 0.00 0.00 2.29
1915 2018 5.806654 TTCAGGCCTTCTTTAGCATTTTT 57.193 34.783 0.00 0.00 0.00 1.94
2002 2107 7.792032 TGTCTGGCAGTTTTTAGCTACTATAT 58.208 34.615 15.27 0.00 0.00 0.86
2005 2110 5.245301 TCTGTCTGGCAGTTTTTAGCTACTA 59.755 40.000 15.27 0.00 45.23 1.82
2006 2111 4.040461 TCTGTCTGGCAGTTTTTAGCTACT 59.960 41.667 15.27 0.00 45.23 2.57
2007 2112 4.315803 TCTGTCTGGCAGTTTTTAGCTAC 58.684 43.478 15.27 2.24 45.23 3.58
2022 2127 1.681264 GGGGTTTTGGTGTTCTGTCTG 59.319 52.381 0.00 0.00 0.00 3.51
2026 2131 2.296190 GCTTAGGGGTTTTGGTGTTCTG 59.704 50.000 0.00 0.00 0.00 3.02
2179 2284 3.006940 TGCACTGAGAAACTTTTCGTGT 58.993 40.909 8.87 2.58 41.92 4.49
2209 2314 1.154727 GCACTGAACCGCGTTAACG 60.155 57.895 23.40 23.40 43.27 3.18
2215 2320 2.010817 GCTTTTGCACTGAACCGCG 61.011 57.895 0.00 0.00 46.58 6.46
2243 2348 8.385898 TCGGAAAATAATAGCGGAATAAACAT 57.614 30.769 0.00 0.00 0.00 2.71
2245 2350 7.858583 ACTCGGAAAATAATAGCGGAATAAAC 58.141 34.615 0.00 0.00 0.00 2.01
2264 2369 0.528017 GCACAGATGTCTGACTCGGA 59.472 55.000 16.41 0.00 46.59 4.55
2267 2372 2.230992 AGACTGCACAGATGTCTGACTC 59.769 50.000 16.41 4.49 46.59 3.36
2312 2418 8.086851 GTGTTTCCTTCCTTAATAAACACGTA 57.913 34.615 12.04 0.00 45.52 3.57
2492 2599 2.143876 ACCACTGAAAGCACCAAGTT 57.856 45.000 0.00 0.00 37.60 2.66
2527 2635 5.777850 TTCAGTGTAGTACAGTAACAGCA 57.222 39.130 10.32 0.00 29.11 4.41
2658 2768 2.862541 AGTCTACTGTTTGGCATTGCA 58.137 42.857 11.39 0.00 0.00 4.08
2670 2780 9.891828 GACATATTGAGATGTTCTAGTCTACTG 57.108 37.037 0.00 0.00 40.18 2.74
2671 2781 9.860650 AGACATATTGAGATGTTCTAGTCTACT 57.139 33.333 0.00 0.00 40.18 2.57
2702 2971 7.763985 TCAAAAATATGTGAGCGAACTCTATCA 59.236 33.333 0.00 0.00 43.85 2.15
2816 3086 2.164422 GCTGATTACTGGCTTTCCAACC 59.836 50.000 0.00 0.00 42.91 3.77
2933 3206 9.933723 GTACTGTAACTAGTAAATTTCTTCCCA 57.066 33.333 0.00 0.00 35.12 4.37
2956 3229 8.454106 TGTTATTCAGGAGTTACGACTAAGTAC 58.546 37.037 0.00 0.00 35.88 2.73
2966 3239 6.228258 TGTGTCCTTGTTATTCAGGAGTTAC 58.772 40.000 0.00 0.00 0.00 2.50
3081 3354 4.271533 TCGCTGCGAAAAGAGTAAAAAGAA 59.728 37.500 23.88 0.00 31.06 2.52
3131 3405 7.014134 TCTGCATTCAAATTCAGTGTTAAGGAA 59.986 33.333 3.00 0.00 32.54 3.36
3398 3672 0.325933 TGGTCTCAGCCACAGGATTG 59.674 55.000 0.00 0.00 32.81 2.67
3438 3712 2.180276 GACATCAGGTATCGGGCCTAT 58.820 52.381 0.84 0.00 34.45 2.57
3439 3713 1.629043 GACATCAGGTATCGGGCCTA 58.371 55.000 0.84 0.00 34.45 3.93
3471 3745 8.985315 ATCTGCTTATTCATGGAATTCAAGTA 57.015 30.769 7.93 0.00 33.95 2.24
3629 3903 9.566432 CTCATATTAAGCCCTATTTCAAGTTCT 57.434 33.333 0.00 0.00 0.00 3.01
3792 4066 2.169352 GCCTCTTGAGGAGTTCAGCATA 59.831 50.000 19.85 0.00 40.30 3.14
3938 4212 1.969208 TGGCAATCAAAGACAATGGCA 59.031 42.857 0.00 0.00 43.18 4.92
3979 4253 5.076182 AGGAGATGAGCTTATCTTCGATCA 58.924 41.667 20.85 0.00 37.69 2.92
3980 4254 5.643379 AGGAGATGAGCTTATCTTCGATC 57.357 43.478 20.85 8.90 37.69 3.69
4049 4323 5.227569 TGAAAGCTGATACAGAGTTTGGA 57.772 39.130 2.81 0.00 32.44 3.53
4055 4329 4.869297 CCTGAGTTGAAAGCTGATACAGAG 59.131 45.833 2.81 0.00 32.44 3.35
4091 4365 4.104696 TGCTGCAATCAAATGACATCTG 57.895 40.909 0.00 0.00 0.00 2.90
4100 4374 5.185442 TGATATCCTTGTTGCTGCAATCAAA 59.815 36.000 19.11 12.17 0.00 2.69
4154 4428 3.879295 CTGAACGCTGGAATATCAACCAT 59.121 43.478 0.00 0.00 35.54 3.55
4175 4449 0.478072 TGTTGGGTCCAGTCATTGCT 59.522 50.000 0.00 0.00 0.00 3.91
4265 4539 0.250901 CATTTCCATCCCCGCCTAGG 60.251 60.000 3.67 3.67 40.63 3.02
4268 4542 0.041090 AAACATTTCCATCCCCGCCT 59.959 50.000 0.00 0.00 0.00 5.52
4271 4545 0.175531 GCCAAACATTTCCATCCCCG 59.824 55.000 0.00 0.00 0.00 5.73
4292 4566 3.694072 CGCAAAGGATTTCCCAGAATACA 59.306 43.478 0.00 0.00 35.03 2.29
4336 4610 5.358442 CCACGGTATAGAAGAGATGGATAGG 59.642 48.000 0.00 0.00 0.00 2.57
4508 4782 6.488006 ACCTCATATAATCAACTGCATGTTCC 59.512 38.462 0.00 0.00 36.63 3.62
4514 4788 5.366477 TCTGGACCTCATATAATCAACTGCA 59.634 40.000 0.00 0.00 0.00 4.41
4586 4860 1.212935 AGTTTCGGCTCCCATGCTAAT 59.787 47.619 0.00 0.00 0.00 1.73
4587 4861 0.618458 AGTTTCGGCTCCCATGCTAA 59.382 50.000 0.00 0.00 0.00 3.09
4588 4862 0.618458 AAGTTTCGGCTCCCATGCTA 59.382 50.000 0.00 0.00 0.00 3.49
4589 4863 0.678048 GAAGTTTCGGCTCCCATGCT 60.678 55.000 0.00 0.00 0.00 3.79
4609 4883 5.105063 GCTATTCTGCCTGACAAATTTTCC 58.895 41.667 0.00 0.00 0.00 3.13
4617 4891 3.538591 CTCATTGCTATTCTGCCTGACA 58.461 45.455 0.00 0.00 0.00 3.58
4629 4903 1.025647 TGCGCATGTGCTCATTGCTA 61.026 50.000 29.79 6.18 43.37 3.49
4631 4905 1.410737 CTTGCGCATGTGCTCATTGC 61.411 55.000 29.79 13.23 35.54 3.56
4664 4938 4.815269 ACTACACTGACTTCATCTTGAGC 58.185 43.478 0.00 0.00 0.00 4.26
4667 4941 6.151985 ACTCCTACTACACTGACTTCATCTTG 59.848 42.308 0.00 0.00 0.00 3.02
4708 4982 1.773653 AGGGAGATTCAGGCCAGATTC 59.226 52.381 5.01 8.86 0.00 2.52
4709 4983 1.904440 AGGGAGATTCAGGCCAGATT 58.096 50.000 5.01 0.00 0.00 2.40
4710 4984 1.773653 GAAGGGAGATTCAGGCCAGAT 59.226 52.381 5.01 0.00 0.00 2.90
4711 4985 1.207791 GAAGGGAGATTCAGGCCAGA 58.792 55.000 5.01 0.00 0.00 3.86
4712 4986 0.182299 GGAAGGGAGATTCAGGCCAG 59.818 60.000 5.01 0.00 0.00 4.85
4713 4987 0.253347 AGGAAGGGAGATTCAGGCCA 60.253 55.000 5.01 0.00 0.00 5.36
4714 4988 1.418264 GTAGGAAGGGAGATTCAGGCC 59.582 57.143 0.00 0.00 0.00 5.19
4715 4989 2.403561 AGTAGGAAGGGAGATTCAGGC 58.596 52.381 0.00 0.00 0.00 4.85
4716 4990 5.212745 ACTAAGTAGGAAGGGAGATTCAGG 58.787 45.833 0.00 0.00 0.00 3.86
4717 4991 5.894393 TGACTAAGTAGGAAGGGAGATTCAG 59.106 44.000 0.00 0.00 0.00 3.02
4718 4992 5.838955 TGACTAAGTAGGAAGGGAGATTCA 58.161 41.667 0.00 0.00 0.00 2.57
4744 5018 3.370104 ACCATCAAAACTTGGTTCACCA 58.630 40.909 0.00 0.00 45.94 4.17
4754 5028 2.297701 ACGAGCACAACCATCAAAACT 58.702 42.857 0.00 0.00 0.00 2.66
4773 5050 8.365210 CGAAATTACATAATGCTTGTGACAAAC 58.635 33.333 0.00 0.00 0.00 2.93
4784 5061 9.840427 AATTACATAGGCGAAATTACATAATGC 57.160 29.630 0.00 0.00 0.00 3.56
4862 5139 9.161629 CAACATCGGAGCCATAAAACATATATA 57.838 33.333 0.00 0.00 0.00 0.86
4863 5140 7.665559 ACAACATCGGAGCCATAAAACATATAT 59.334 33.333 0.00 0.00 0.00 0.86
4901 5178 2.879103 AACCAATGGATTCACCGAGT 57.121 45.000 6.16 0.00 42.61 4.18
4996 5273 2.346365 GCCGAGAAAAGGGACGGT 59.654 61.111 0.00 0.00 45.91 4.83
5008 5285 1.134280 ACAATCTGGAATCAGGCCGAG 60.134 52.381 0.00 0.00 41.23 4.63
5015 5292 3.708403 ACAGCTCACAATCTGGAATCA 57.292 42.857 0.00 0.00 34.76 2.57
5021 5298 3.996150 AACCAAACAGCTCACAATCTG 57.004 42.857 0.00 0.00 36.45 2.90
5028 5305 3.071023 ACTGCTACTAACCAAACAGCTCA 59.929 43.478 0.00 0.00 33.38 4.26
5044 5321 1.609061 GCTGTGGCAAGAGAACTGCTA 60.609 52.381 0.00 0.00 36.28 3.49
5045 5322 0.888285 GCTGTGGCAAGAGAACTGCT 60.888 55.000 0.00 0.00 36.28 4.24
5046 5323 1.578423 GCTGTGGCAAGAGAACTGC 59.422 57.895 0.00 0.00 38.54 4.40
5079 5356 6.183360 ACGTTACACTTGCAATTAACAACTGA 60.183 34.615 18.49 0.00 0.00 3.41
5087 5364 9.335891 CAAATCAATACGTTACACTTGCAATTA 57.664 29.630 0.00 0.00 0.00 1.40
5093 5370 7.795431 AATGCAAATCAATACGTTACACTTG 57.205 32.000 0.00 0.00 0.00 3.16
5139 5416 6.515043 AAAGAACAGCAAATGAAATCGTTG 57.485 33.333 0.00 0.00 0.00 4.10
5225 5505 4.730949 AGCACTGGAATGGAATTGATTG 57.269 40.909 0.00 0.00 36.07 2.67
5226 5506 4.622220 GCAAGCACTGGAATGGAATTGATT 60.622 41.667 0.00 0.00 36.07 2.57
5230 5510 1.551883 GGCAAGCACTGGAATGGAATT 59.448 47.619 0.00 0.00 40.93 2.17
5234 5514 0.458669 GATGGCAAGCACTGGAATGG 59.541 55.000 0.00 0.00 0.00 3.16
5273 5554 2.710377 TGGCGATTTGTAGATTGCTGT 58.290 42.857 0.00 0.00 36.77 4.40
5274 5555 3.562973 AGATGGCGATTTGTAGATTGCTG 59.437 43.478 0.00 0.00 36.77 4.41
5276 5557 4.035558 TGAAGATGGCGATTTGTAGATTGC 59.964 41.667 0.00 0.00 35.99 3.56
5277 5558 5.739752 TGAAGATGGCGATTTGTAGATTG 57.260 39.130 0.00 0.00 0.00 2.67
5278 5559 6.757897 TTTGAAGATGGCGATTTGTAGATT 57.242 33.333 0.00 0.00 0.00 2.40
5279 5560 6.183360 CCTTTTGAAGATGGCGATTTGTAGAT 60.183 38.462 0.00 0.00 0.00 1.98
5298 5626 5.043248 CACAAGTTTTAGCCTGTCCTTTTG 58.957 41.667 0.00 0.00 0.00 2.44
5306 6210 8.352942 ACTCTTTAATTCACAAGTTTTAGCCTG 58.647 33.333 0.00 0.00 0.00 4.85
5326 6243 1.466851 GCTGGCTTGCCCAACTCTTT 61.467 55.000 9.35 0.00 44.81 2.52
5339 6256 1.075226 TATCTTCCCTCGGCTGGCT 60.075 57.895 0.00 0.00 0.00 4.75
5357 6274 1.344763 AGCTTGTACGGCTCAGAAACT 59.655 47.619 7.24 0.00 34.70 2.66
5371 6288 1.975407 GCCACTGCCATGAGCTTGT 60.975 57.895 0.00 0.00 44.23 3.16
5405 6322 2.284995 AGAGGTGAGGTGGGGCTC 60.285 66.667 0.00 0.00 0.00 4.70
5410 6327 0.764890 TGTTTGGAGAGGTGAGGTGG 59.235 55.000 0.00 0.00 0.00 4.61
5462 6379 5.863935 CACATTCAAGATTAGTGTCTCGTCA 59.136 40.000 0.00 0.00 0.00 4.35
5469 6386 4.848357 CCCCTCACATTCAAGATTAGTGT 58.152 43.478 0.00 0.00 0.00 3.55
5470 6387 3.629398 GCCCCTCACATTCAAGATTAGTG 59.371 47.826 0.00 0.00 0.00 2.74
5471 6388 3.372025 GGCCCCTCACATTCAAGATTAGT 60.372 47.826 0.00 0.00 0.00 2.24
5472 6389 3.117738 AGGCCCCTCACATTCAAGATTAG 60.118 47.826 0.00 0.00 0.00 1.73
5473 6390 2.852449 AGGCCCCTCACATTCAAGATTA 59.148 45.455 0.00 0.00 0.00 1.75
5474 6391 1.642762 AGGCCCCTCACATTCAAGATT 59.357 47.619 0.00 0.00 0.00 2.40
5475 6392 1.064166 CAGGCCCCTCACATTCAAGAT 60.064 52.381 0.00 0.00 0.00 2.40
5476 6393 0.329261 CAGGCCCCTCACATTCAAGA 59.671 55.000 0.00 0.00 0.00 3.02
5477 6394 0.682209 CCAGGCCCCTCACATTCAAG 60.682 60.000 0.00 0.00 0.00 3.02
5478 6395 1.383799 CCAGGCCCCTCACATTCAA 59.616 57.895 0.00 0.00 0.00 2.69
5479 6396 3.089838 CCAGGCCCCTCACATTCA 58.910 61.111 0.00 0.00 0.00 2.57
5480 6397 2.440980 GCCAGGCCCCTCACATTC 60.441 66.667 0.00 0.00 0.00 2.67
5481 6398 4.066139 GGCCAGGCCCCTCACATT 62.066 66.667 21.62 0.00 44.06 2.71
5493 6410 2.378634 CCCCCTTCTACCTGGCCAG 61.379 68.421 26.87 26.87 0.00 4.85
5494 6411 2.286121 CCCCCTTCTACCTGGCCA 60.286 66.667 4.71 4.71 0.00 5.36
5495 6412 3.810188 GCCCCCTTCTACCTGGCC 61.810 72.222 0.00 0.00 36.07 5.36
5496 6413 2.612493 TTGCCCCCTTCTACCTGGC 61.612 63.158 0.00 0.00 42.49 4.85
5497 6414 1.303282 GTTGCCCCCTTCTACCTGG 59.697 63.158 0.00 0.00 0.00 4.45
5498 6415 1.208165 AGGTTGCCCCCTTCTACCTG 61.208 60.000 0.00 0.00 38.06 4.00
5499 6416 0.477795 AAGGTTGCCCCCTTCTACCT 60.478 55.000 0.00 0.00 40.98 3.08
5500 6417 2.084596 AAGGTTGCCCCCTTCTACC 58.915 57.895 0.00 0.00 40.98 3.18
5506 6423 1.068352 ACTTCAGAAGGTTGCCCCCT 61.068 55.000 14.90 0.00 35.96 4.79
5507 6424 0.895559 CACTTCAGAAGGTTGCCCCC 60.896 60.000 14.90 0.00 0.00 5.40
5508 6425 0.110486 TCACTTCAGAAGGTTGCCCC 59.890 55.000 14.90 0.00 0.00 5.80
5509 6426 2.206576 ATCACTTCAGAAGGTTGCCC 57.793 50.000 14.90 0.00 0.00 5.36
5510 6427 4.187694 CTCTATCACTTCAGAAGGTTGCC 58.812 47.826 14.90 0.00 0.00 4.52
5511 6428 4.629200 CACTCTATCACTTCAGAAGGTTGC 59.371 45.833 14.90 0.00 0.00 4.17
5512 6429 6.030548 TCACTCTATCACTTCAGAAGGTTG 57.969 41.667 14.90 4.89 0.00 3.77
5513 6430 5.777732 ACTCACTCTATCACTTCAGAAGGTT 59.222 40.000 14.90 1.56 0.00 3.50
5514 6431 5.184864 CACTCACTCTATCACTTCAGAAGGT 59.815 44.000 14.90 3.06 0.00 3.50
5515 6432 5.394005 CCACTCACTCTATCACTTCAGAAGG 60.394 48.000 14.90 3.96 0.00 3.46
5516 6433 5.417266 TCCACTCACTCTATCACTTCAGAAG 59.583 44.000 8.77 8.77 0.00 2.85
5517 6434 5.184096 GTCCACTCACTCTATCACTTCAGAA 59.816 44.000 0.00 0.00 0.00 3.02
5518 6435 4.702612 GTCCACTCACTCTATCACTTCAGA 59.297 45.833 0.00 0.00 0.00 3.27
5519 6436 4.460731 TGTCCACTCACTCTATCACTTCAG 59.539 45.833 0.00 0.00 0.00 3.02
5520 6437 4.407365 TGTCCACTCACTCTATCACTTCA 58.593 43.478 0.00 0.00 0.00 3.02
5521 6438 5.590530 ATGTCCACTCACTCTATCACTTC 57.409 43.478 0.00 0.00 0.00 3.01
5522 6439 6.191315 ACTATGTCCACTCACTCTATCACTT 58.809 40.000 0.00 0.00 0.00 3.16
5523 6440 5.761205 ACTATGTCCACTCACTCTATCACT 58.239 41.667 0.00 0.00 0.00 3.41
5524 6441 6.458232 AACTATGTCCACTCACTCTATCAC 57.542 41.667 0.00 0.00 0.00 3.06
5525 6442 6.437477 ACAAACTATGTCCACTCACTCTATCA 59.563 38.462 0.00 0.00 37.96 2.15
5526 6443 6.754209 CACAAACTATGTCCACTCACTCTATC 59.246 42.308 0.00 0.00 41.46 2.08
5527 6444 6.211584 ACACAAACTATGTCCACTCACTCTAT 59.788 38.462 0.00 0.00 41.46 1.98
5528 6445 5.538813 ACACAAACTATGTCCACTCACTCTA 59.461 40.000 0.00 0.00 41.46 2.43
5529 6446 4.345257 ACACAAACTATGTCCACTCACTCT 59.655 41.667 0.00 0.00 41.46 3.24
5530 6447 4.449068 CACACAAACTATGTCCACTCACTC 59.551 45.833 0.00 0.00 41.46 3.51
5531 6448 4.380531 CACACAAACTATGTCCACTCACT 58.619 43.478 0.00 0.00 41.46 3.41
5532 6449 3.058914 GCACACAAACTATGTCCACTCAC 60.059 47.826 0.00 0.00 41.46 3.51
5533 6450 3.138304 GCACACAAACTATGTCCACTCA 58.862 45.455 0.00 0.00 41.46 3.41
5534 6451 3.138304 TGCACACAAACTATGTCCACTC 58.862 45.455 0.00 0.00 41.46 3.51
5535 6452 3.207265 TGCACACAAACTATGTCCACT 57.793 42.857 0.00 0.00 41.46 4.00
5536 6453 3.563808 TCTTGCACACAAACTATGTCCAC 59.436 43.478 0.00 0.00 41.46 4.02
5537 6454 3.814625 TCTTGCACACAAACTATGTCCA 58.185 40.909 0.00 0.00 41.46 4.02
5538 6455 4.829064 TTCTTGCACACAAACTATGTCC 57.171 40.909 0.00 0.00 41.46 4.02
5539 6456 5.821204 AGTTTCTTGCACACAAACTATGTC 58.179 37.500 12.90 0.00 41.46 3.06
5540 6457 5.835113 AGTTTCTTGCACACAAACTATGT 57.165 34.783 12.90 0.00 45.34 2.29
5541 6458 7.842525 CTTAGTTTCTTGCACACAAACTATG 57.157 36.000 18.19 16.79 40.55 2.23


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.