Multiple sequence alignment - TraesCS6B01G356200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G356200 chr6B 100.000 3469 0 0 1 3469 624498229 624494761 0.000000e+00 6407.0
1 TraesCS6B01G356200 chr6B 93.683 1029 47 4 1601 2624 624403328 624402313 0.000000e+00 1524.0
2 TraesCS6B01G356200 chr6B 87.956 1287 73 32 338 1588 624410241 624409001 0.000000e+00 1443.0
3 TraesCS6B01G356200 chr6B 93.228 886 43 9 1819 2703 624312772 624311903 0.000000e+00 1288.0
4 TraesCS6B01G356200 chr6B 88.514 801 60 9 1674 2472 624018356 624017586 0.000000e+00 941.0
5 TraesCS6B01G356200 chr6B 83.905 758 75 30 852 1589 624313805 624313075 0.000000e+00 680.0
6 TraesCS6B01G356200 chr6B 84.777 716 50 32 852 1538 624019332 624018647 0.000000e+00 664.0
7 TraesCS6B01G356200 chr6B 81.950 759 81 35 852 1589 624179062 624178339 2.980000e-165 592.0
8 TraesCS6B01G356200 chr6B 89.035 456 44 6 2699 3150 624272952 624272499 8.410000e-156 560.0
9 TraesCS6B01G356200 chr6B 90.704 355 26 6 2810 3162 624401670 624401321 1.890000e-127 466.0
10 TraesCS6B01G356200 chr6B 94.175 206 10 1 2620 2825 624402180 624401977 2.600000e-81 313.0
11 TraesCS6B01G356200 chr6B 91.626 203 11 3 184 381 624020212 624020011 3.410000e-70 276.0
12 TraesCS6B01G356200 chr6B 86.066 244 24 7 468 706 624019623 624019385 1.600000e-63 254.0
13 TraesCS6B01G356200 chr6B 88.690 168 11 4 20 180 624314660 624314494 7.590000e-47 198.0
14 TraesCS6B01G356200 chr6B 88.095 168 12 4 20 180 624181605 624181439 3.530000e-45 193.0
15 TraesCS6B01G356200 chr6B 96.154 104 3 1 3366 3469 624401330 624401228 5.950000e-38 169.0
16 TraesCS6B01G356200 chr6B 83.938 193 11 8 1 175 624020190 624020000 2.140000e-37 167.0
17 TraesCS6B01G356200 chr6B 79.554 269 23 13 224 481 624314660 624314413 2.770000e-36 163.0
18 TraesCS6B01G356200 chr6B 93.243 74 4 1 3370 3443 624272496 624272424 1.320000e-19 108.0
19 TraesCS6B01G356200 chr6B 85.714 98 4 6 384 481 624019729 624019642 1.020000e-15 95.3
20 TraesCS6B01G356200 chr6B 97.674 43 1 0 771 813 624019386 624019344 1.340000e-09 75.0
21 TraesCS6B01G356200 chr6D 91.586 1557 83 20 1601 3144 414257002 414255481 0.000000e+00 2106.0
22 TraesCS6B01G356200 chr6D 88.834 1415 79 32 209 1584 414258703 414257329 0.000000e+00 1664.0
23 TraesCS6B01G356200 chr6D 92.553 1034 59 15 1611 2640 414114248 414113229 0.000000e+00 1467.0
24 TraesCS6B01G356200 chr6D 91.541 662 47 7 1811 2472 414078235 414077583 0.000000e+00 904.0
25 TraesCS6B01G356200 chr6D 84.068 703 68 26 852 1534 414115052 414114374 3.780000e-179 638.0
26 TraesCS6B01G356200 chr6D 84.724 635 59 22 852 1478 414078889 414078285 4.950000e-168 601.0
27 TraesCS6B01G356200 chr6D 92.653 245 18 0 2640 2884 414111473 414111229 1.530000e-93 353.0
28 TraesCS6B01G356200 chr6D 82.620 374 40 14 303 653 414115601 414115230 1.210000e-79 307.0
29 TraesCS6B01G356200 chr6D 87.952 166 14 3 4 164 414258703 414258539 1.270000e-44 191.0
30 TraesCS6B01G356200 chr6D 79.137 278 23 14 224 489 414080061 414079807 3.580000e-35 159.0
31 TraesCS6B01G356200 chr6D 86.923 130 10 3 531 653 414079087 414078958 4.670000e-29 139.0
32 TraesCS6B01G356200 chr6D 77.395 261 39 13 2889 3144 348086470 348086225 1.680000e-28 137.0
33 TraesCS6B01G356200 chr6D 94.595 74 3 1 3397 3469 414255231 414255158 2.830000e-21 113.0
34 TraesCS6B01G356200 chr6D 77.295 207 36 10 2944 3143 38819877 38819675 1.020000e-20 111.0
35 TraesCS6B01G356200 chr6D 86.207 87 9 3 79 164 414115607 414115523 1.330000e-14 91.6
36 TraesCS6B01G356200 chr6A 88.839 1568 94 27 1601 3162 559168167 559166675 0.000000e+00 1851.0
37 TraesCS6B01G356200 chr6A 88.290 1409 85 28 224 1584 559169620 559168244 0.000000e+00 1615.0
38 TraesCS6B01G356200 chr6A 91.101 663 47 9 1811 2470 559002813 559002160 0.000000e+00 887.0
39 TraesCS6B01G356200 chr6A 91.088 662 47 9 1811 2469 559132759 559132107 0.000000e+00 885.0
40 TraesCS6B01G356200 chr6A 91.459 562 35 10 1912 2469 559019481 559018929 0.000000e+00 760.0
41 TraesCS6B01G356200 chr6A 85.631 689 50 26 859 1534 559133653 559133001 0.000000e+00 678.0
42 TraesCS6B01G356200 chr6A 86.813 546 46 18 1000 1534 559003585 559003055 1.390000e-163 586.0
43 TraesCS6B01G356200 chr6A 84.211 475 42 23 1072 1532 559020212 559019757 6.880000e-117 431.0
44 TraesCS6B01G356200 chr6A 85.412 425 32 12 184 605 559004246 559003849 6.930000e-112 414.0
45 TraesCS6B01G356200 chr6A 89.124 331 25 9 2838 3162 559166623 559166298 5.390000e-108 401.0
46 TraesCS6B01G356200 chr6A 82.040 451 34 19 184 605 559020671 559020239 1.190000e-89 340.0
47 TraesCS6B01G356200 chr6A 89.883 257 21 5 2838 3090 559166246 559165991 3.340000e-85 326.0
48 TraesCS6B01G356200 chr6A 92.593 162 11 1 4 164 559169637 559169476 7.490000e-57 231.0
49 TraesCS6B01G356200 chr6A 88.489 139 11 5 29 164 559134459 559134323 2.770000e-36 163.0
50 TraesCS6B01G356200 chr6A 92.929 99 7 0 3366 3464 559157195 559157097 1.000000e-30 145.0
51 TraesCS6B01G356200 chr6A 79.641 167 14 12 6 164 559004219 559004065 6.130000e-18 102.0
52 TraesCS6B01G356200 chrUn 89.975 399 28 10 2075 2470 395158320 395158709 4.000000e-139 505.0
53 TraesCS6B01G356200 chrUn 96.818 220 7 0 3149 3368 338512634 338512853 5.470000e-98 368.0
54 TraesCS6B01G356200 chrUn 93.333 225 15 0 3143 3367 249144647 249144871 2.000000e-87 333.0
55 TraesCS6B01G356200 chr4B 96.818 220 7 0 3149 3368 622432574 622432355 5.470000e-98 368.0
56 TraesCS6B01G356200 chr4B 94.595 222 12 0 3149 3370 257424633 257424412 9.220000e-91 344.0
57 TraesCS6B01G356200 chr2B 95.890 219 9 0 3149 3367 1158852 1158634 4.260000e-94 355.0
58 TraesCS6B01G356200 chr2B 94.222 225 11 2 3145 3367 179260246 179260470 3.320000e-90 342.0
59 TraesCS6B01G356200 chr5B 95.000 220 11 0 3148 3367 455278597 455278378 2.560000e-91 346.0
60 TraesCS6B01G356200 chr7B 93.805 226 12 2 3142 3367 711499446 711499669 4.290000e-89 339.0
61 TraesCS6B01G356200 chr3B 94.144 222 13 0 3149 3370 237252341 237252120 4.290000e-89 339.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G356200 chr6B 624494761 624498229 3468 True 6407.000000 6407 100.000000 1 3469 1 chr6B.!!$R2 3468
1 TraesCS6B01G356200 chr6B 624409001 624410241 1240 True 1443.000000 1443 87.956000 338 1588 1 chr6B.!!$R1 1250
2 TraesCS6B01G356200 chr6B 624401228 624403328 2100 True 618.000000 1524 93.679000 1601 3469 4 chr6B.!!$R7 1868
3 TraesCS6B01G356200 chr6B 624311903 624314660 2757 True 582.250000 1288 86.344250 20 2703 4 chr6B.!!$R6 2683
4 TraesCS6B01G356200 chr6B 624178339 624181605 3266 True 392.500000 592 85.022500 20 1589 2 chr6B.!!$R4 1569
5 TraesCS6B01G356200 chr6B 624017586 624020212 2626 True 353.185714 941 88.329857 1 2472 7 chr6B.!!$R3 2471
6 TraesCS6B01G356200 chr6B 624272424 624272952 528 True 334.000000 560 91.139000 2699 3443 2 chr6B.!!$R5 744
7 TraesCS6B01G356200 chr6D 414255158 414258703 3545 True 1018.500000 2106 90.741750 4 3469 4 chr6D.!!$R5 3465
8 TraesCS6B01G356200 chr6D 414111229 414115607 4378 True 571.320000 1467 87.620200 79 2884 5 chr6D.!!$R4 2805
9 TraesCS6B01G356200 chr6D 414077583 414080061 2478 True 450.750000 904 85.581250 224 2472 4 chr6D.!!$R3 2248
10 TraesCS6B01G356200 chr6A 559165991 559169637 3646 True 884.800000 1851 89.745800 4 3162 5 chr6A.!!$R5 3158
11 TraesCS6B01G356200 chr6A 559132107 559134459 2352 True 575.333333 885 88.402667 29 2469 3 chr6A.!!$R4 2440
12 TraesCS6B01G356200 chr6A 559018929 559020671 1742 True 510.333333 760 85.903333 184 2469 3 chr6A.!!$R3 2285
13 TraesCS6B01G356200 chr6A 559002160 559004246 2086 True 497.250000 887 85.741750 6 2470 4 chr6A.!!$R2 2464

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
99 141 0.036952 AGCACCAGTCAAGTGATCGG 60.037 55.0 0.0 0.0 37.42 4.18 F
173 225 0.190069 TGGGTCAGGTCAGGTGTACT 59.810 55.0 0.0 0.0 0.00 2.73 F
840 4507 0.250945 TTGCGTTTAGGTGCCATCCA 60.251 50.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 5470 2.189594 TTCTGTGGAATCTGGTGCTG 57.810 50.000 0.00 0.00 0.00 4.41 R
2063 6363 2.276116 GCTGACCTGGTCGTCCTGA 61.276 63.158 21.15 2.35 34.95 3.86 R
2613 6931 0.917333 TCCCCGGAATTTAGTGCCCT 60.917 55.000 0.73 0.00 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 141 0.036952 AGCACCAGTCAAGTGATCGG 60.037 55.000 0.00 0.00 37.42 4.18
102 149 0.321671 ACCAGTCAAGTGATCGGTGG 59.678 55.000 4.34 3.21 32.41 4.61
159 211 1.865865 CACTATATGTGGCGTGGGTC 58.134 55.000 0.00 0.00 42.68 4.46
160 212 1.138069 CACTATATGTGGCGTGGGTCA 59.862 52.381 0.00 0.00 42.68 4.02
161 213 1.412710 ACTATATGTGGCGTGGGTCAG 59.587 52.381 0.00 0.00 0.00 3.51
162 214 0.756294 TATATGTGGCGTGGGTCAGG 59.244 55.000 0.00 0.00 0.00 3.86
163 215 1.271840 ATATGTGGCGTGGGTCAGGT 61.272 55.000 0.00 0.00 0.00 4.00
164 216 1.895020 TATGTGGCGTGGGTCAGGTC 61.895 60.000 0.00 0.00 0.00 3.85
165 217 3.936203 GTGGCGTGGGTCAGGTCA 61.936 66.667 0.00 0.00 31.40 4.02
166 218 3.625897 TGGCGTGGGTCAGGTCAG 61.626 66.667 0.00 0.00 30.40 3.51
167 219 4.394712 GGCGTGGGTCAGGTCAGG 62.395 72.222 0.00 0.00 0.00 3.86
168 220 3.626924 GCGTGGGTCAGGTCAGGT 61.627 66.667 0.00 0.00 0.00 4.00
169 221 2.343758 CGTGGGTCAGGTCAGGTG 59.656 66.667 0.00 0.00 0.00 4.00
170 222 2.507854 CGTGGGTCAGGTCAGGTGT 61.508 63.158 0.00 0.00 0.00 4.16
171 223 1.183030 CGTGGGTCAGGTCAGGTGTA 61.183 60.000 0.00 0.00 0.00 2.90
172 224 0.320697 GTGGGTCAGGTCAGGTGTAC 59.679 60.000 0.00 0.00 0.00 2.90
173 225 0.190069 TGGGTCAGGTCAGGTGTACT 59.810 55.000 0.00 0.00 0.00 2.73
174 226 1.430075 TGGGTCAGGTCAGGTGTACTA 59.570 52.381 0.00 0.00 0.00 1.82
175 227 1.823610 GGGTCAGGTCAGGTGTACTAC 59.176 57.143 0.00 0.00 0.00 2.73
176 228 1.471684 GGTCAGGTCAGGTGTACTACG 59.528 57.143 0.00 0.00 0.00 3.51
177 229 1.135460 GTCAGGTCAGGTGTACTACGC 60.135 57.143 0.00 0.00 0.00 4.42
222 274 5.525378 CCCAAAATTACTAGCTCTAGCAGTG 59.475 44.000 4.54 0.00 45.16 3.66
299 351 4.357947 GTCGCCGGACAGCAGTCA 62.358 66.667 5.05 0.00 46.80 3.41
304 356 1.364626 GCCGGACAGCAGTCATTCAG 61.365 60.000 5.05 0.00 46.80 3.02
313 365 3.186001 CAGCAGTCATTCAGTCAAGTGAC 59.814 47.826 3.12 3.12 45.08 3.67
327 384 2.993899 CAAGTGACCGATGTTGGAGTAC 59.006 50.000 0.00 0.00 0.00 2.73
332 389 3.827876 TGACCGATGTTGGAGTACTACAA 59.172 43.478 16.89 16.89 0.00 2.41
336 393 6.335777 ACCGATGTTGGAGTACTACAAATAC 58.664 40.000 22.22 11.54 34.76 1.89
431 780 8.146412 TCAACCTGTAAAGTAAAGTAAGAGACC 58.854 37.037 0.00 0.00 0.00 3.85
464 813 6.431278 CGTACGACATAGAGTTCATCAATCT 58.569 40.000 10.44 0.00 0.00 2.40
472 833 8.346300 ACATAGAGTTCATCAATCTACACTACG 58.654 37.037 0.00 0.00 0.00 3.51
493 889 8.624776 ACTACGTAGGTTAGGTATACATGAAAC 58.375 37.037 25.63 0.00 0.00 2.78
517 917 2.156098 GGCTAGCGTAGACTATCAGCT 58.844 52.381 9.00 12.52 41.45 4.24
602 2405 6.210078 CGATATTCCTGGAGACAACTTAGTC 58.790 44.000 0.00 0.00 42.06 2.59
759 4416 5.036737 CGTTCCATATTGATTGACCAAAGC 58.963 41.667 0.00 0.00 0.00 3.51
840 4507 0.250945 TTGCGTTTAGGTGCCATCCA 60.251 50.000 0.00 0.00 0.00 3.41
881 4550 1.880027 GCCTATAAATTGGGCACTCCG 59.120 52.381 0.00 0.00 44.69 4.63
945 4629 2.340453 AAGCAGCACAAACACGCAGG 62.340 55.000 0.00 0.00 0.00 4.85
969 4653 1.663388 TTACACACAGCGCGAGTGG 60.663 57.895 30.08 22.88 40.20 4.00
1197 4926 6.377327 TGTATTTAGAAAGCAGGCATAAGC 57.623 37.500 0.00 0.00 41.10 3.09
1264 5043 0.394762 TGCTGAACCATGGCATCTCC 60.395 55.000 13.04 6.65 0.00 3.71
1504 5301 5.867716 ACGTACGCCTGATTCCATAATAATC 59.132 40.000 16.72 0.00 34.55 1.75
1589 5499 5.954150 AGCACCAGATTCCACAGAAATTATT 59.046 36.000 0.00 0.00 35.09 1.40
1591 5501 6.532657 GCACCAGATTCCACAGAAATTATTTG 59.467 38.462 0.00 0.00 35.09 2.32
1593 5503 7.756722 CACCAGATTCCACAGAAATTATTTGAC 59.243 37.037 0.00 0.00 35.09 3.18
1638 5867 1.462283 CATTCCTGACACAGCAAGTCG 59.538 52.381 0.00 0.00 38.83 4.18
1668 5904 5.637006 AGCAGCAGATATAGTAGTGCTAC 57.363 43.478 0.00 1.33 44.45 3.58
1694 5936 9.173021 CTAGTACTAGGATATCAACAGGAGATG 57.827 40.741 20.44 0.00 0.00 2.90
1755 5997 2.681152 GTGACCAACACGATTGGAAC 57.319 50.000 23.92 17.97 42.06 3.62
1763 6009 3.708563 ACACGATTGGAACCACTTTTG 57.291 42.857 0.00 0.00 0.00 2.44
1770 6016 4.394439 TTGGAACCACTTTTGTTTAGCC 57.606 40.909 0.00 0.00 0.00 3.93
1771 6017 3.637769 TGGAACCACTTTTGTTTAGCCT 58.362 40.909 0.00 0.00 0.00 4.58
1775 6021 3.361786 ACCACTTTTGTTTAGCCTGTGT 58.638 40.909 0.00 0.00 0.00 3.72
1831 6131 1.655600 GCCTTTTTCGTGTCGTCGTTC 60.656 52.381 0.00 0.00 0.00 3.95
2063 6363 2.034879 CGGCGTGATCCTGCTGTTT 61.035 57.895 0.00 0.00 32.78 2.83
2613 6931 2.890945 TCCGACTCACAGATTCTTGTCA 59.109 45.455 0.00 0.00 0.00 3.58
2636 7091 3.558033 GGCACTAAATTCCGGGGATTTA 58.442 45.455 17.58 17.58 0.00 1.40
2879 9419 7.882179 AGCGTTCTGGTTACTGAAATTTTATT 58.118 30.769 0.00 0.00 36.49 1.40
2920 9462 9.921637 ACATGGTAATGTTATTCAACGAAATTT 57.078 25.926 0.00 0.00 44.94 1.82
2925 9467 5.820926 TGTTATTCAACGAAATTTGCTGC 57.179 34.783 0.00 0.00 37.48 5.25
2926 9468 5.284864 TGTTATTCAACGAAATTTGCTGCA 58.715 33.333 0.00 0.00 37.48 4.41
2946 9865 3.731089 CATGTCCATGGCAAAACAAACT 58.269 40.909 6.96 0.00 35.24 2.66
2970 9889 3.558931 TTCACGGCCATTGATATGTCT 57.441 42.857 2.24 0.00 0.00 3.41
3022 9944 4.272018 CGGCAATTTTCACAACAAATCCAA 59.728 37.500 0.00 0.00 0.00 3.53
3144 10068 1.392589 CTGGCTATTGCGGTCCAAAT 58.607 50.000 0.00 0.00 40.82 2.32
3145 10069 1.334869 CTGGCTATTGCGGTCCAAATC 59.665 52.381 0.00 0.00 40.82 2.17
3146 10070 1.340502 TGGCTATTGCGGTCCAAATCA 60.341 47.619 0.00 0.00 40.82 2.57
3147 10071 1.065551 GGCTATTGCGGTCCAAATCAC 59.934 52.381 0.00 0.00 40.82 3.06
3149 10073 3.202906 GCTATTGCGGTCCAAATCACTA 58.797 45.455 0.00 0.00 36.92 2.74
3150 10074 3.002348 GCTATTGCGGTCCAAATCACTAC 59.998 47.826 0.00 0.00 36.92 2.73
3151 10075 2.851263 TTGCGGTCCAAATCACTACT 57.149 45.000 0.00 0.00 0.00 2.57
3152 10076 3.965379 TTGCGGTCCAAATCACTACTA 57.035 42.857 0.00 0.00 0.00 1.82
3153 10077 3.241067 TGCGGTCCAAATCACTACTAC 57.759 47.619 0.00 0.00 0.00 2.73
3154 10078 2.563620 TGCGGTCCAAATCACTACTACA 59.436 45.455 0.00 0.00 0.00 2.74
3155 10079 3.196901 TGCGGTCCAAATCACTACTACAT 59.803 43.478 0.00 0.00 0.00 2.29
3156 10080 3.802685 GCGGTCCAAATCACTACTACATC 59.197 47.826 0.00 0.00 0.00 3.06
3157 10081 4.441634 GCGGTCCAAATCACTACTACATCT 60.442 45.833 0.00 0.00 0.00 2.90
3158 10082 5.043903 CGGTCCAAATCACTACTACATCTG 58.956 45.833 0.00 0.00 0.00 2.90
3159 10083 5.394224 CGGTCCAAATCACTACTACATCTGT 60.394 44.000 0.00 0.00 0.00 3.41
3160 10084 6.407202 GGTCCAAATCACTACTACATCTGTT 58.593 40.000 0.00 0.00 0.00 3.16
3161 10085 6.879458 GGTCCAAATCACTACTACATCTGTTT 59.121 38.462 0.00 0.00 0.00 2.83
3162 10086 7.064728 GGTCCAAATCACTACTACATCTGTTTC 59.935 40.741 0.00 0.00 0.00 2.78
3163 10087 7.602644 GTCCAAATCACTACTACATCTGTTTCA 59.397 37.037 0.00 0.00 0.00 2.69
3164 10088 7.819415 TCCAAATCACTACTACATCTGTTTCAG 59.181 37.037 0.00 0.00 0.00 3.02
3165 10089 7.604164 CCAAATCACTACTACATCTGTTTCAGT 59.396 37.037 0.00 0.00 32.61 3.41
3166 10090 8.993121 CAAATCACTACTACATCTGTTTCAGTT 58.007 33.333 0.00 0.00 32.61 3.16
3167 10091 9.561069 AAATCACTACTACATCTGTTTCAGTTT 57.439 29.630 0.00 0.00 32.61 2.66
3169 10093 9.640963 ATCACTACTACATCTGTTTCAGTTTAC 57.359 33.333 0.00 0.00 32.61 2.01
3170 10094 8.635328 TCACTACTACATCTGTTTCAGTTTACA 58.365 33.333 0.00 0.00 32.61 2.41
3171 10095 9.256477 CACTACTACATCTGTTTCAGTTTACAA 57.744 33.333 0.00 0.00 32.61 2.41
3172 10096 9.477484 ACTACTACATCTGTTTCAGTTTACAAG 57.523 33.333 0.00 0.00 32.61 3.16
3173 10097 9.477484 CTACTACATCTGTTTCAGTTTACAAGT 57.523 33.333 0.00 0.00 32.61 3.16
3174 10098 8.366671 ACTACATCTGTTTCAGTTTACAAGTC 57.633 34.615 0.00 0.00 32.61 3.01
3175 10099 6.619801 ACATCTGTTTCAGTTTACAAGTCC 57.380 37.500 0.00 0.00 32.61 3.85
3176 10100 6.357367 ACATCTGTTTCAGTTTACAAGTCCT 58.643 36.000 0.00 0.00 32.61 3.85
3177 10101 7.506114 ACATCTGTTTCAGTTTACAAGTCCTA 58.494 34.615 0.00 0.00 32.61 2.94
3178 10102 7.441458 ACATCTGTTTCAGTTTACAAGTCCTAC 59.559 37.037 0.00 0.00 32.61 3.18
3179 10103 5.981315 TCTGTTTCAGTTTACAAGTCCTACG 59.019 40.000 0.00 0.00 32.61 3.51
3180 10104 4.508861 TGTTTCAGTTTACAAGTCCTACGC 59.491 41.667 0.00 0.00 0.00 4.42
3181 10105 4.325028 TTCAGTTTACAAGTCCTACGCA 57.675 40.909 0.00 0.00 0.00 5.24
3182 10106 4.530710 TCAGTTTACAAGTCCTACGCAT 57.469 40.909 0.00 0.00 0.00 4.73
3183 10107 5.648178 TCAGTTTACAAGTCCTACGCATA 57.352 39.130 0.00 0.00 0.00 3.14
3184 10108 6.216801 TCAGTTTACAAGTCCTACGCATAT 57.783 37.500 0.00 0.00 0.00 1.78
3185 10109 7.337480 TCAGTTTACAAGTCCTACGCATATA 57.663 36.000 0.00 0.00 0.00 0.86
3186 10110 7.198390 TCAGTTTACAAGTCCTACGCATATAC 58.802 38.462 0.00 0.00 0.00 1.47
3187 10111 6.420008 CAGTTTACAAGTCCTACGCATATACC 59.580 42.308 0.00 0.00 0.00 2.73
3188 10112 6.323225 AGTTTACAAGTCCTACGCATATACCT 59.677 38.462 0.00 0.00 0.00 3.08
3189 10113 7.503566 AGTTTACAAGTCCTACGCATATACCTA 59.496 37.037 0.00 0.00 0.00 3.08
3190 10114 5.961396 ACAAGTCCTACGCATATACCTAG 57.039 43.478 0.00 0.00 0.00 3.02
3191 10115 4.765856 ACAAGTCCTACGCATATACCTAGG 59.234 45.833 7.41 7.41 0.00 3.02
3192 10116 4.654389 AGTCCTACGCATATACCTAGGT 57.346 45.455 20.57 20.57 0.00 3.08
3193 10117 4.995536 AGTCCTACGCATATACCTAGGTT 58.004 43.478 22.11 10.62 0.00 3.50
3194 10118 6.131972 AGTCCTACGCATATACCTAGGTTA 57.868 41.667 22.11 12.52 0.00 2.85
3195 10119 6.729428 AGTCCTACGCATATACCTAGGTTAT 58.271 40.000 22.11 14.20 0.00 1.89
3196 10120 6.827762 AGTCCTACGCATATACCTAGGTTATC 59.172 42.308 22.11 10.26 0.00 1.75
3197 10121 6.600822 GTCCTACGCATATACCTAGGTTATCA 59.399 42.308 22.11 1.21 0.00 2.15
3198 10122 7.121759 GTCCTACGCATATACCTAGGTTATCAA 59.878 40.741 22.11 0.75 0.00 2.57
3199 10123 7.837689 TCCTACGCATATACCTAGGTTATCAAT 59.162 37.037 22.11 9.64 0.00 2.57
3200 10124 8.475639 CCTACGCATATACCTAGGTTATCAATT 58.524 37.037 22.11 3.12 0.00 2.32
3201 10125 9.871238 CTACGCATATACCTAGGTTATCAATTT 57.129 33.333 22.11 0.00 0.00 1.82
3202 10126 8.547967 ACGCATATACCTAGGTTATCAATTTG 57.452 34.615 22.11 12.91 0.00 2.32
3203 10127 8.372459 ACGCATATACCTAGGTTATCAATTTGA 58.628 33.333 22.11 0.75 0.00 2.69
3204 10128 9.383519 CGCATATACCTAGGTTATCAATTTGAT 57.616 33.333 22.11 15.78 40.72 2.57
3330 10254 1.659098 GTCAAATTGACGACCTAGGCG 59.341 52.381 19.72 19.72 37.67 5.52
3331 10255 1.274167 TCAAATTGACGACCTAGGCGT 59.726 47.619 24.82 24.82 45.79 5.68
3332 10256 2.492881 TCAAATTGACGACCTAGGCGTA 59.507 45.455 24.68 14.59 42.77 4.42
3333 10257 2.573941 AATTGACGACCTAGGCGTAC 57.426 50.000 24.68 19.01 42.77 3.67
3334 10258 0.379669 ATTGACGACCTAGGCGTACG 59.620 55.000 24.68 19.18 42.77 3.67
3335 10259 2.023882 GACGACCTAGGCGTACGC 59.976 66.667 31.54 31.54 42.77 4.42
3336 10260 3.780267 GACGACCTAGGCGTACGCG 62.780 68.421 31.78 20.97 42.77 6.01
3347 10271 4.781959 GTACGCGCACGCCCTGTA 62.782 66.667 5.73 3.39 45.53 2.74
3348 10272 4.053526 TACGCGCACGCCCTGTAA 62.054 61.111 5.73 0.00 45.53 2.41
3349 10273 3.570621 TACGCGCACGCCCTGTAAA 62.571 57.895 5.73 0.00 45.53 2.01
3350 10274 4.439472 CGCGCACGCCCTGTAAAC 62.439 66.667 8.75 0.00 37.98 2.01
3351 10275 3.047877 GCGCACGCCCTGTAAACT 61.048 61.111 0.30 0.00 34.56 2.66
3352 10276 2.860293 CGCACGCCCTGTAAACTG 59.140 61.111 0.00 0.00 0.00 3.16
3353 10277 1.666553 CGCACGCCCTGTAAACTGA 60.667 57.895 0.00 0.00 0.00 3.41
3354 10278 1.626654 CGCACGCCCTGTAAACTGAG 61.627 60.000 0.00 0.00 0.00 3.35
3355 10279 0.320421 GCACGCCCTGTAAACTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
3356 10280 1.714794 CACGCCCTGTAAACTGAGAG 58.285 55.000 0.00 0.00 0.00 3.20
3357 10281 1.272490 CACGCCCTGTAAACTGAGAGA 59.728 52.381 0.00 0.00 0.00 3.10
3358 10282 1.546476 ACGCCCTGTAAACTGAGAGAG 59.454 52.381 0.00 0.00 0.00 3.20
3359 10283 1.819288 CGCCCTGTAAACTGAGAGAGA 59.181 52.381 0.00 0.00 0.00 3.10
3360 10284 2.159310 CGCCCTGTAAACTGAGAGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
3361 10285 2.167487 GCCCTGTAAACTGAGAGAGAGG 59.833 54.545 0.00 0.00 0.00 3.69
3362 10286 3.436243 CCCTGTAAACTGAGAGAGAGGT 58.564 50.000 0.00 0.00 0.00 3.85
3363 10287 4.601084 CCCTGTAAACTGAGAGAGAGGTA 58.399 47.826 0.00 0.00 0.00 3.08
3364 10288 4.642885 CCCTGTAAACTGAGAGAGAGGTAG 59.357 50.000 0.00 0.00 0.00 3.18
3435 10672 3.855689 AACTATGCATGCCAACAACTC 57.144 42.857 16.68 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 20 6.152831 CACGTACCTTGATCTATCCATGGATA 59.847 42.308 28.77 28.77 36.17 2.59
84 119 0.321671 ACCACCGATCACTTGACTGG 59.678 55.000 0.00 0.00 0.00 4.00
153 205 0.320697 GTACACCTGACCTGACCCAC 59.679 60.000 0.00 0.00 0.00 4.61
154 206 0.190069 AGTACACCTGACCTGACCCA 59.810 55.000 0.00 0.00 0.00 4.51
155 207 1.823610 GTAGTACACCTGACCTGACCC 59.176 57.143 0.00 0.00 0.00 4.46
156 208 1.471684 CGTAGTACACCTGACCTGACC 59.528 57.143 0.38 0.00 0.00 4.02
157 209 1.135460 GCGTAGTACACCTGACCTGAC 60.135 57.143 0.38 0.00 0.00 3.51
158 210 1.171308 GCGTAGTACACCTGACCTGA 58.829 55.000 0.38 0.00 0.00 3.86
159 211 0.172803 GGCGTAGTACACCTGACCTG 59.827 60.000 0.00 0.00 0.00 4.00
160 212 0.039326 AGGCGTAGTACACCTGACCT 59.961 55.000 9.12 0.00 27.70 3.85
161 213 2.576298 AGGCGTAGTACACCTGACC 58.424 57.895 9.12 0.00 27.70 4.02
164 216 0.172803 GGTCAGGCGTAGTACACCTG 59.827 60.000 25.43 25.43 46.91 4.00
165 217 0.039326 AGGTCAGGCGTAGTACACCT 59.961 55.000 3.90 3.90 28.98 4.00
166 218 0.172803 CAGGTCAGGCGTAGTACACC 59.827 60.000 0.00 0.00 0.00 4.16
167 219 1.132643 CTCAGGTCAGGCGTAGTACAC 59.867 57.143 0.38 0.00 0.00 2.90
168 220 1.271762 ACTCAGGTCAGGCGTAGTACA 60.272 52.381 0.38 0.00 0.00 2.90
169 221 1.461559 ACTCAGGTCAGGCGTAGTAC 58.538 55.000 0.00 0.00 0.00 2.73
170 222 2.421107 CCTACTCAGGTCAGGCGTAGTA 60.421 54.545 0.00 0.00 37.15 1.82
171 223 1.682394 CCTACTCAGGTCAGGCGTAGT 60.682 57.143 0.00 0.00 37.15 2.73
172 224 1.025812 CCTACTCAGGTCAGGCGTAG 58.974 60.000 0.00 0.00 37.15 3.51
173 225 0.622136 TCCTACTCAGGTCAGGCGTA 59.378 55.000 0.00 0.00 43.18 4.42
174 226 0.966370 GTCCTACTCAGGTCAGGCGT 60.966 60.000 0.00 0.00 43.18 5.68
175 227 0.965866 TGTCCTACTCAGGTCAGGCG 60.966 60.000 0.00 0.00 43.18 5.52
176 228 2.977578 TGTCCTACTCAGGTCAGGC 58.022 57.895 0.00 0.00 43.18 4.85
179 231 1.595993 GCGCTGTCCTACTCAGGTCA 61.596 60.000 0.00 0.00 43.18 4.02
180 232 1.139947 GCGCTGTCCTACTCAGGTC 59.860 63.158 0.00 0.00 43.18 3.85
181 233 2.352032 GGCGCTGTCCTACTCAGGT 61.352 63.158 7.64 0.00 43.18 4.00
182 234 2.496817 GGCGCTGTCCTACTCAGG 59.503 66.667 7.64 0.00 44.17 3.86
199 251 6.341316 TCACTGCTAGAGCTAGTAATTTTGG 58.659 40.000 2.72 0.00 42.66 3.28
222 274 6.025749 TGTAACGTGATCTATCCATGGATC 57.974 41.667 30.61 17.68 42.89 3.36
285 337 1.364626 CTGAATGACTGCTGTCCGGC 61.365 60.000 19.64 9.81 42.28 6.13
291 343 3.186001 GTCACTTGACTGAATGACTGCTG 59.814 47.826 1.92 0.00 41.65 4.41
304 356 2.069273 CTCCAACATCGGTCACTTGAC 58.931 52.381 0.34 0.34 44.04 3.18
313 365 6.334989 TGTATTTGTAGTACTCCAACATCGG 58.665 40.000 0.00 0.00 0.00 4.18
332 389 6.294176 GGAGTTCTGCTGTCAACAAATGTATT 60.294 38.462 0.00 0.00 0.00 1.89
336 393 3.316029 TGGAGTTCTGCTGTCAACAAATG 59.684 43.478 0.00 0.00 0.00 2.32
370 427 2.594592 GTGGTGCACCTGACCCAC 60.595 66.667 34.75 20.50 40.47 4.61
431 780 2.876550 TCTATGTCGTACGGATGGAGTG 59.123 50.000 16.52 0.00 0.00 3.51
464 813 8.428852 TCATGTATACCTAACCTACGTAGTGTA 58.571 37.037 20.73 13.19 45.73 2.90
472 833 7.709613 CCACTGTTTCATGTATACCTAACCTAC 59.290 40.741 0.00 0.00 0.00 3.18
493 889 2.879026 TGATAGTCTACGCTAGCCACTG 59.121 50.000 9.66 0.00 0.00 3.66
517 917 8.642432 AGCAGTATGATAAGCACTAACTGATAA 58.358 33.333 3.89 0.00 39.69 1.75
586 2147 6.151985 ACATACTCTGACTAAGTTGTCTCCAG 59.848 42.308 6.89 0.00 37.79 3.86
602 2405 5.697473 ACCTGATCGACATACATACTCTG 57.303 43.478 0.00 0.00 0.00 3.35
657 2503 1.447838 AAATCGGATCAGCGTGCGT 60.448 52.632 0.00 0.00 34.37 5.24
658 2504 1.011904 CAAATCGGATCAGCGTGCG 60.012 57.895 0.00 0.00 0.00 5.34
659 2505 1.297893 GCAAATCGGATCAGCGTGC 60.298 57.895 0.00 0.00 0.00 5.34
660 2506 1.570813 TAGCAAATCGGATCAGCGTG 58.429 50.000 8.39 0.00 0.00 5.34
661 2507 1.933853 GTTAGCAAATCGGATCAGCGT 59.066 47.619 8.39 2.28 0.00 5.07
662 2508 1.933181 TGTTAGCAAATCGGATCAGCG 59.067 47.619 8.39 0.00 0.00 5.18
663 2509 3.812053 AGATGTTAGCAAATCGGATCAGC 59.188 43.478 6.52 6.52 0.00 4.26
664 2510 4.149571 CGAGATGTTAGCAAATCGGATCAG 59.850 45.833 8.35 0.00 34.84 2.90
840 4507 1.439644 GCGAGAGAGAAATCCCGCT 59.560 57.895 0.00 0.00 39.57 5.52
846 4514 1.725557 TAGGCGCGCGAGAGAGAAAT 61.726 55.000 37.18 9.52 0.00 2.17
847 4515 1.725557 ATAGGCGCGCGAGAGAGAAA 61.726 55.000 37.18 9.26 0.00 2.52
969 4653 1.047596 TGATGCCTCTCTGCCTCTCC 61.048 60.000 0.00 0.00 0.00 3.71
976 4666 2.227149 CTCTCGATCTGATGCCTCTCTG 59.773 54.545 0.00 0.00 0.00 3.35
1179 4891 4.525996 TCATGCTTATGCCTGCTTTCTAA 58.474 39.130 0.00 0.00 38.71 2.10
1264 5043 4.193334 TCGTCCATCAGCTCGGCG 62.193 66.667 0.00 0.00 0.00 6.46
1504 5301 4.258702 AGTGACCAAGTAGCAGTAGTTG 57.741 45.455 0.00 0.00 38.75 3.16
1564 5470 2.189594 TTCTGTGGAATCTGGTGCTG 57.810 50.000 0.00 0.00 0.00 4.41
1601 5511 7.602644 GTCAGGAATGACTTTGTGACTAATACA 59.397 37.037 1.19 0.00 36.01 2.29
1603 5513 7.602644 GTGTCAGGAATGACTTTGTGACTAATA 59.397 37.037 9.57 0.00 39.41 0.98
1605 5515 5.758296 GTGTCAGGAATGACTTTGTGACTAA 59.242 40.000 9.57 0.00 39.41 2.24
1606 5516 5.163353 TGTGTCAGGAATGACTTTGTGACTA 60.163 40.000 9.57 3.06 39.41 2.59
1646 5882 5.321102 AGTAGCACTACTATATCTGCTGCT 58.679 41.667 8.57 0.65 44.73 4.24
1663 5899 7.883833 CCTGTTGATATCCTAGTACTAGTAGCA 59.116 40.741 24.84 18.09 0.00 3.49
1664 5900 8.102047 TCCTGTTGATATCCTAGTACTAGTAGC 58.898 40.741 24.84 16.08 0.00 3.58
1666 5902 9.389949 TCTCCTGTTGATATCCTAGTACTAGTA 57.610 37.037 24.84 12.94 0.00 1.82
1668 5904 9.173021 CATCTCCTGTTGATATCCTAGTACTAG 57.827 40.741 21.11 21.11 0.00 2.57
1670 5906 7.760607 TCATCTCCTGTTGATATCCTAGTACT 58.239 38.462 0.00 0.00 0.00 2.73
1672 5908 7.990055 TCTCATCTCCTGTTGATATCCTAGTA 58.010 38.462 0.00 0.00 0.00 1.82
1755 5997 3.380004 TGACACAGGCTAAACAAAAGTGG 59.620 43.478 0.00 0.00 0.00 4.00
1763 6009 4.142469 ACAAACAAGTGACACAGGCTAAAC 60.142 41.667 8.59 0.00 0.00 2.01
1770 6016 4.685169 AACAGACAAACAAGTGACACAG 57.315 40.909 8.59 2.36 0.00 3.66
1771 6017 6.183360 GGAATAACAGACAAACAAGTGACACA 60.183 38.462 8.59 0.00 0.00 3.72
1775 6021 6.353323 TCAGGAATAACAGACAAACAAGTGA 58.647 36.000 0.00 0.00 0.00 3.41
1831 6131 4.093998 CGAATTCCTTCATCACTTGTCTGG 59.906 45.833 0.00 0.00 0.00 3.86
1921 6221 4.530857 CCCGCTTCAGGTAGCCCG 62.531 72.222 0.00 0.00 37.90 6.13
2063 6363 2.276116 GCTGACCTGGTCGTCCTGA 61.276 63.158 21.15 2.35 34.95 3.86
2357 6657 1.038280 AGTCCTCGAACACGAACCTT 58.962 50.000 0.00 0.00 35.63 3.50
2465 6765 1.419374 GGGCGCGTATCAGTTATCAG 58.581 55.000 8.43 0.00 0.00 2.90
2613 6931 0.917333 TCCCCGGAATTTAGTGCCCT 60.917 55.000 0.73 0.00 0.00 5.19
2636 7091 6.097270 AGCATGCCATAATCCGCAAAATATAT 59.903 34.615 15.66 0.00 38.75 0.86
2724 8940 3.063997 GGCAACAGAATTACATGACCGAG 59.936 47.826 0.00 0.00 0.00 4.63
2920 9462 1.186267 TTTGCCATGGACATGCAGCA 61.186 50.000 18.40 10.74 37.49 4.41
2925 9467 3.731089 AGTTTGTTTTGCCATGGACATG 58.269 40.909 18.40 5.33 38.51 3.21
2926 9468 4.420522 AAGTTTGTTTTGCCATGGACAT 57.579 36.364 18.40 0.00 0.00 3.06
2958 9877 7.226128 AGTTGTCATACTGCAGACATATCAATG 59.774 37.037 23.35 10.01 43.57 2.82
2970 9889 4.690748 GCTTGAAGTAGTTGTCATACTGCA 59.309 41.667 0.00 0.00 37.08 4.41
3144 10068 8.635328 TGTAAACTGAAACAGATGTAGTAGTGA 58.365 33.333 5.76 0.00 35.18 3.41
3145 10069 8.812147 TGTAAACTGAAACAGATGTAGTAGTG 57.188 34.615 5.76 0.00 35.18 2.74
3146 10070 9.477484 CTTGTAAACTGAAACAGATGTAGTAGT 57.523 33.333 5.76 0.00 35.18 2.73
3147 10071 9.477484 ACTTGTAAACTGAAACAGATGTAGTAG 57.523 33.333 5.76 0.00 35.18 2.57
3149 10073 7.441458 GGACTTGTAAACTGAAACAGATGTAGT 59.559 37.037 5.76 2.02 35.18 2.73
3150 10074 7.657761 AGGACTTGTAAACTGAAACAGATGTAG 59.342 37.037 5.76 0.00 35.18 2.74
3151 10075 7.506114 AGGACTTGTAAACTGAAACAGATGTA 58.494 34.615 5.76 0.00 35.18 2.29
3152 10076 6.357367 AGGACTTGTAAACTGAAACAGATGT 58.643 36.000 5.76 0.00 35.18 3.06
3153 10077 6.867662 AGGACTTGTAAACTGAAACAGATG 57.132 37.500 5.76 0.00 35.18 2.90
3154 10078 6.645415 CGTAGGACTTGTAAACTGAAACAGAT 59.355 38.462 5.76 0.00 35.18 2.90
3155 10079 5.981315 CGTAGGACTTGTAAACTGAAACAGA 59.019 40.000 5.76 0.00 35.18 3.41
3156 10080 5.333111 GCGTAGGACTTGTAAACTGAAACAG 60.333 44.000 0.00 0.00 37.52 3.16
3157 10081 4.508861 GCGTAGGACTTGTAAACTGAAACA 59.491 41.667 0.00 0.00 0.00 2.83
3158 10082 4.508861 TGCGTAGGACTTGTAAACTGAAAC 59.491 41.667 0.00 0.00 0.00 2.78
3159 10083 4.695396 TGCGTAGGACTTGTAAACTGAAA 58.305 39.130 0.00 0.00 0.00 2.69
3160 10084 4.325028 TGCGTAGGACTTGTAAACTGAA 57.675 40.909 0.00 0.00 0.00 3.02
3161 10085 4.530710 ATGCGTAGGACTTGTAAACTGA 57.469 40.909 0.00 0.00 0.00 3.41
3162 10086 6.420008 GGTATATGCGTAGGACTTGTAAACTG 59.580 42.308 0.00 0.00 0.00 3.16
3163 10087 6.323225 AGGTATATGCGTAGGACTTGTAAACT 59.677 38.462 0.00 0.00 0.00 2.66
3164 10088 6.510536 AGGTATATGCGTAGGACTTGTAAAC 58.489 40.000 0.00 0.00 0.00 2.01
3165 10089 6.720112 AGGTATATGCGTAGGACTTGTAAA 57.280 37.500 0.00 0.00 0.00 2.01
3166 10090 6.432162 CCTAGGTATATGCGTAGGACTTGTAA 59.568 42.308 26.46 0.00 45.08 2.41
3167 10091 5.942236 CCTAGGTATATGCGTAGGACTTGTA 59.058 44.000 26.46 0.00 45.08 2.41
3168 10092 4.765856 CCTAGGTATATGCGTAGGACTTGT 59.234 45.833 26.46 0.00 45.08 3.16
3169 10093 4.765856 ACCTAGGTATATGCGTAGGACTTG 59.234 45.833 33.06 15.39 45.08 3.16
3170 10094 4.995536 ACCTAGGTATATGCGTAGGACTT 58.004 43.478 33.06 16.80 45.08 3.01
3171 10095 4.654389 ACCTAGGTATATGCGTAGGACT 57.346 45.455 33.06 17.36 45.08 3.85
3172 10096 6.600822 TGATAACCTAGGTATATGCGTAGGAC 59.399 42.308 33.06 23.05 45.08 3.85
3173 10097 6.724351 TGATAACCTAGGTATATGCGTAGGA 58.276 40.000 33.06 19.40 45.08 2.94
3174 10098 7.400599 TTGATAACCTAGGTATATGCGTAGG 57.599 40.000 27.87 27.87 46.64 3.18
3175 10099 9.871238 AAATTGATAACCTAGGTATATGCGTAG 57.129 33.333 16.67 12.10 0.00 3.51
3176 10100 9.647797 CAAATTGATAACCTAGGTATATGCGTA 57.352 33.333 16.67 1.85 0.00 4.42
3177 10101 8.372459 TCAAATTGATAACCTAGGTATATGCGT 58.628 33.333 16.67 0.00 0.00 5.24
3178 10102 8.771920 TCAAATTGATAACCTAGGTATATGCG 57.228 34.615 16.67 0.00 0.00 4.73
3298 10222 9.309516 GGTCGTCAATTTGACTAATCTAATACA 57.690 33.333 23.29 0.00 44.85 2.29
3299 10223 9.530633 AGGTCGTCAATTTGACTAATCTAATAC 57.469 33.333 23.29 9.66 44.85 1.89
3301 10225 9.751542 CTAGGTCGTCAATTTGACTAATCTAAT 57.248 33.333 23.29 7.31 44.85 1.73
3302 10226 8.195436 CCTAGGTCGTCAATTTGACTAATCTAA 58.805 37.037 23.29 8.48 44.85 2.10
3303 10227 7.683704 GCCTAGGTCGTCAATTTGACTAATCTA 60.684 40.741 23.29 18.76 44.85 1.98
3304 10228 6.574350 CCTAGGTCGTCAATTTGACTAATCT 58.426 40.000 23.29 18.67 44.85 2.40
3305 10229 5.234543 GCCTAGGTCGTCAATTTGACTAATC 59.765 44.000 23.29 13.65 44.85 1.75
3306 10230 5.116882 GCCTAGGTCGTCAATTTGACTAAT 58.883 41.667 23.29 11.53 44.85 1.73
3307 10231 4.501071 GCCTAGGTCGTCAATTTGACTAA 58.499 43.478 23.29 11.42 44.85 2.24
3308 10232 3.428452 CGCCTAGGTCGTCAATTTGACTA 60.428 47.826 23.29 12.80 44.85 2.59
3309 10233 2.674177 CGCCTAGGTCGTCAATTTGACT 60.674 50.000 23.29 10.24 44.85 3.41
3310 10234 1.659098 CGCCTAGGTCGTCAATTTGAC 59.341 52.381 17.76 17.76 43.65 3.18
3311 10235 1.274167 ACGCCTAGGTCGTCAATTTGA 59.726 47.619 20.83 0.00 34.84 2.69
3312 10236 1.722011 ACGCCTAGGTCGTCAATTTG 58.278 50.000 20.83 0.00 34.84 2.32
3313 10237 2.733227 CGTACGCCTAGGTCGTCAATTT 60.733 50.000 27.04 10.56 40.89 1.82
3314 10238 1.202222 CGTACGCCTAGGTCGTCAATT 60.202 52.381 27.04 11.13 40.89 2.32
3315 10239 0.379669 CGTACGCCTAGGTCGTCAAT 59.620 55.000 27.04 11.42 40.89 2.57
3316 10240 1.796151 CGTACGCCTAGGTCGTCAA 59.204 57.895 27.04 13.54 40.89 3.18
3317 10241 2.753966 GCGTACGCCTAGGTCGTCA 61.754 63.158 29.51 15.02 40.89 4.35
3318 10242 2.023882 GCGTACGCCTAGGTCGTC 59.976 66.667 29.51 19.12 40.89 4.20
3319 10243 3.869272 CGCGTACGCCTAGGTCGT 61.869 66.667 32.64 26.62 43.20 4.34
3330 10254 4.781959 TACAGGGCGTGCGCGTAC 62.782 66.667 22.18 17.94 43.06 3.67
3331 10255 3.570621 TTTACAGGGCGTGCGCGTA 62.571 57.895 22.18 0.00 43.06 4.42
3332 10256 4.973055 TTTACAGGGCGTGCGCGT 62.973 61.111 22.18 2.94 43.06 6.01
3333 10257 4.439472 GTTTACAGGGCGTGCGCG 62.439 66.667 16.86 16.86 43.06 6.86
3334 10258 3.047877 AGTTTACAGGGCGTGCGC 61.048 61.111 7.17 8.17 41.06 6.09
3335 10259 1.626654 CTCAGTTTACAGGGCGTGCG 61.627 60.000 7.17 0.00 0.00 5.34
3336 10260 0.320421 TCTCAGTTTACAGGGCGTGC 60.320 55.000 7.17 0.00 0.00 5.34
3337 10261 1.272490 TCTCTCAGTTTACAGGGCGTG 59.728 52.381 5.50 5.50 0.00 5.34
3338 10262 1.546476 CTCTCTCAGTTTACAGGGCGT 59.454 52.381 0.00 0.00 0.00 5.68
3339 10263 1.819288 TCTCTCTCAGTTTACAGGGCG 59.181 52.381 0.00 0.00 0.00 6.13
3340 10264 2.167487 CCTCTCTCTCAGTTTACAGGGC 59.833 54.545 0.00 0.00 0.00 5.19
3341 10265 3.436243 ACCTCTCTCTCAGTTTACAGGG 58.564 50.000 0.00 0.00 0.00 4.45
3342 10266 5.258051 ACTACCTCTCTCTCAGTTTACAGG 58.742 45.833 0.00 0.00 0.00 4.00
3343 10267 6.879993 TGTACTACCTCTCTCTCAGTTTACAG 59.120 42.308 0.00 0.00 0.00 2.74
3344 10268 6.776744 TGTACTACCTCTCTCTCAGTTTACA 58.223 40.000 0.00 0.00 0.00 2.41
3345 10269 7.254522 CGATGTACTACCTCTCTCTCAGTTTAC 60.255 44.444 0.00 0.00 0.00 2.01
3346 10270 6.762187 CGATGTACTACCTCTCTCTCAGTTTA 59.238 42.308 0.00 0.00 0.00 2.01
3347 10271 5.587043 CGATGTACTACCTCTCTCTCAGTTT 59.413 44.000 0.00 0.00 0.00 2.66
3348 10272 5.120399 CGATGTACTACCTCTCTCTCAGTT 58.880 45.833 0.00 0.00 0.00 3.16
3349 10273 4.162698 ACGATGTACTACCTCTCTCTCAGT 59.837 45.833 0.00 0.00 0.00 3.41
3350 10274 4.699637 ACGATGTACTACCTCTCTCTCAG 58.300 47.826 0.00 0.00 0.00 3.35
3351 10275 4.757019 ACGATGTACTACCTCTCTCTCA 57.243 45.455 0.00 0.00 0.00 3.27
3352 10276 6.292274 CGTAAACGATGTACTACCTCTCTCTC 60.292 46.154 0.00 0.00 43.02 3.20
3353 10277 5.523188 CGTAAACGATGTACTACCTCTCTCT 59.477 44.000 0.00 0.00 43.02 3.10
3354 10278 5.521735 TCGTAAACGATGTACTACCTCTCTC 59.478 44.000 0.14 0.00 44.22 3.20
3355 10279 5.423015 TCGTAAACGATGTACTACCTCTCT 58.577 41.667 0.14 0.00 44.22 3.10
3356 10280 5.725110 TCGTAAACGATGTACTACCTCTC 57.275 43.478 0.14 0.00 44.22 3.20
3435 10672 6.256104 TGTGAAAAGAAGTGCAACAATTGATG 59.744 34.615 13.59 12.22 41.43 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.