Multiple sequence alignment - TraesCS6B01G355900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G355900 chr6B 100.000 3544 0 0 1 3544 624314665 624311122 0.000000e+00 6545.0
1 TraesCS6B01G355900 chr6B 94.266 1744 76 11 806 2544 624179117 624177393 0.000000e+00 2645.0
2 TraesCS6B01G355900 chr6B 93.228 886 43 9 1894 2763 624496411 624495527 0.000000e+00 1288.0
3 TraesCS6B01G355900 chr6B 92.689 807 38 9 1894 2686 624403112 624402313 0.000000e+00 1144.0
4 TraesCS6B01G355900 chr6B 92.508 654 49 0 1894 2547 624018239 624017586 0.000000e+00 937.0
5 TraesCS6B01G355900 chr6B 97.400 423 10 1 1 423 624181610 624181189 0.000000e+00 719.0
6 TraesCS6B01G355900 chr6B 83.968 761 69 30 861 1591 624497378 624496641 0.000000e+00 680.0
7 TraesCS6B01G355900 chr6B 83.420 772 74 32 861 1590 624409760 624409001 0.000000e+00 667.0
8 TraesCS6B01G355900 chr6B 82.603 730 67 35 813 1513 624019373 624018675 1.100000e-164 590.0
9 TraesCS6B01G355900 chr6B 88.690 168 11 4 6 172 624498210 624498050 7.760000e-47 198.0
10 TraesCS6B01G355900 chr6B 85.204 196 15 8 552 741 624181179 624180992 4.670000e-44 189.0
11 TraesCS6B01G355900 chr6B 79.554 269 23 13 6 253 624498006 624497749 2.830000e-36 163.0
12 TraesCS6B01G355900 chr6B 98.780 82 1 0 2682 2763 624402180 624402099 2.850000e-31 147.0
13 TraesCS6B01G355900 chr6B 82.022 178 11 9 6 167 624020172 624020000 7.980000e-27 132.0
14 TraesCS6B01G355900 chr6B 81.944 144 14 8 1731 1862 624496543 624496400 1.040000e-20 111.0
15 TraesCS6B01G355900 chr6B 89.412 85 8 1 169 253 624019725 624019642 4.840000e-19 106.0
16 TraesCS6B01G355900 chr6B 86.316 95 9 4 500 591 224870858 224870951 2.250000e-17 100.0
17 TraesCS6B01G355900 chr6B 91.489 47 4 0 500 546 624181136 624181182 8.210000e-07 65.8
18 TraesCS6B01G355900 chr6D 93.213 884 45 7 1894 2763 414256805 414255923 0.000000e+00 1286.0
19 TraesCS6B01G355900 chr6D 93.074 823 41 9 1896 2704 414114047 414113227 0.000000e+00 1190.0
20 TraesCS6B01G355900 chr6D 90.754 822 43 18 673 1488 414079073 414078279 0.000000e+00 1066.0
21 TraesCS6B01G355900 chr6D 87.063 943 61 29 813 1739 414115096 414114199 0.000000e+00 1009.0
22 TraesCS6B01G355900 chr6D 91.730 653 45 7 1895 2547 414078226 414077583 0.000000e+00 898.0
23 TraesCS6B01G355900 chr6D 83.858 731 79 28 861 1564 414258065 414257347 0.000000e+00 660.0
24 TraesCS6B01G355900 chr6D 85.926 540 31 23 1 512 414080066 414079544 5.210000e-148 534.0
25 TraesCS6B01G355900 chr6D 86.641 262 18 7 4 256 414258689 414258436 1.250000e-69 274.0
26 TraesCS6B01G355900 chr6D 92.647 136 7 1 1730 1862 414114173 414114038 3.610000e-45 193.0
27 TraesCS6B01G355900 chr6D 85.246 183 10 6 65 242 414115607 414115437 4.700000e-39 172.0
28 TraesCS6B01G355900 chrUn 93.316 778 50 2 2764 3541 8851167 8851942 0.000000e+00 1147.0
29 TraesCS6B01G355900 chrUn 90.201 398 29 8 2150 2545 395158320 395158709 8.780000e-141 510.0
30 TraesCS6B01G355900 chr3B 92.730 784 48 7 2764 3544 68638495 68637718 0.000000e+00 1123.0
31 TraesCS6B01G355900 chr3B 85.149 101 12 3 493 591 5897202 5897301 2.250000e-17 100.0
32 TraesCS6B01G355900 chr7B 92.564 780 54 4 2764 3541 221780683 221781460 0.000000e+00 1116.0
33 TraesCS6B01G355900 chr4A 92.574 781 53 5 2764 3541 703254170 703254948 0.000000e+00 1116.0
34 TraesCS6B01G355900 chr1B 92.564 780 54 4 2764 3541 84971121 84970344 0.000000e+00 1116.0
35 TraesCS6B01G355900 chr1B 92.347 784 52 6 2760 3541 123974222 123974999 0.000000e+00 1109.0
36 TraesCS6B01G355900 chr5B 92.446 781 56 3 2765 3544 591499823 591499045 0.000000e+00 1112.0
37 TraesCS6B01G355900 chr5B 92.112 786 52 7 2764 3541 634075479 634076262 0.000000e+00 1099.0
38 TraesCS6B01G355900 chr2A 92.564 780 51 5 2764 3541 92426974 92427748 0.000000e+00 1112.0
39 TraesCS6B01G355900 chr6A 88.952 887 55 14 1894 2770 559167972 559167119 0.000000e+00 1055.0
40 TraesCS6B01G355900 chr6A 91.743 654 44 8 1894 2545 559002805 559002160 0.000000e+00 900.0
41 TraesCS6B01G355900 chr6A 91.730 653 44 8 1894 2544 559132751 559132107 0.000000e+00 898.0
42 TraesCS6B01G355900 chr6A 90.751 692 32 13 868 1555 559133653 559132990 0.000000e+00 894.0
43 TraesCS6B01G355900 chr6A 91.382 557 38 8 1990 2544 559019477 559018929 0.000000e+00 754.0
44 TraesCS6B01G355900 chr6A 83.609 787 69 36 857 1596 559169009 559168236 0.000000e+00 684.0
45 TraesCS6B01G355900 chr6A 86.856 563 46 20 1000 1555 559003585 559003044 3.910000e-169 604.0
46 TraesCS6B01G355900 chr6A 91.753 291 17 5 1248 1536 559020047 559019762 7.130000e-107 398.0
47 TraesCS6B01G355900 chr6A 86.239 218 19 3 25 242 559134448 559134242 3.560000e-55 226.0
48 TraesCS6B01G355900 chr6A 83.650 263 20 10 4 256 559169622 559169373 3.560000e-55 226.0
49 TraesCS6B01G355900 chr6A 85.401 137 12 4 1731 1866 559168086 559167957 6.170000e-28 135.0
50 TraesCS6B01G355900 chr5D 88.660 97 9 2 500 594 5153423 5153327 2.240000e-22 117.0
51 TraesCS6B01G355900 chr5D 95.556 45 1 1 546 589 340531551 340531507 1.770000e-08 71.3
52 TraesCS6B01G355900 chr2D 86.170 94 11 2 500 591 14758882 14758975 2.250000e-17 100.0
53 TraesCS6B01G355900 chr2D 97.143 35 1 0 500 534 3761520 3761486 3.820000e-05 60.2
54 TraesCS6B01G355900 chr5A 84.146 82 10 2 500 579 3559714 3559634 3.790000e-10 76.8
55 TraesCS6B01G355900 chr2B 94.595 37 0 2 604 639 23976240 23976205 4.940000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G355900 chr6B 624311122 624314665 3543 True 6545.000000 6545 100.000000 1 3544 1 chr6B.!!$R1 3543
1 TraesCS6B01G355900 chr6B 624177393 624181610 4217 True 1184.333333 2645 92.290000 1 2544 3 chr6B.!!$R4 2543
2 TraesCS6B01G355900 chr6B 624409001 624409760 759 True 667.000000 667 83.420000 861 1590 1 chr6B.!!$R2 729
3 TraesCS6B01G355900 chr6B 624402099 624403112 1013 True 645.500000 1144 95.734500 1894 2763 2 chr6B.!!$R5 869
4 TraesCS6B01G355900 chr6B 624495527 624498210 2683 True 488.000000 1288 85.476800 6 2763 5 chr6B.!!$R6 2757
5 TraesCS6B01G355900 chr6B 624017586 624020172 2586 True 441.250000 937 86.636250 6 2547 4 chr6B.!!$R3 2541
6 TraesCS6B01G355900 chr6D 414077583 414080066 2483 True 832.666667 1066 89.470000 1 2547 3 chr6D.!!$R1 2546
7 TraesCS6B01G355900 chr6D 414255923 414258689 2766 True 740.000000 1286 87.904000 4 2763 3 chr6D.!!$R3 2759
8 TraesCS6B01G355900 chr6D 414113227 414115607 2380 True 641.000000 1190 89.507500 65 2704 4 chr6D.!!$R2 2639
9 TraesCS6B01G355900 chrUn 8851167 8851942 775 False 1147.000000 1147 93.316000 2764 3541 1 chrUn.!!$F1 777
10 TraesCS6B01G355900 chr3B 68637718 68638495 777 True 1123.000000 1123 92.730000 2764 3544 1 chr3B.!!$R1 780
11 TraesCS6B01G355900 chr7B 221780683 221781460 777 False 1116.000000 1116 92.564000 2764 3541 1 chr7B.!!$F1 777
12 TraesCS6B01G355900 chr4A 703254170 703254948 778 False 1116.000000 1116 92.574000 2764 3541 1 chr4A.!!$F1 777
13 TraesCS6B01G355900 chr1B 84970344 84971121 777 True 1116.000000 1116 92.564000 2764 3541 1 chr1B.!!$R1 777
14 TraesCS6B01G355900 chr1B 123974222 123974999 777 False 1109.000000 1109 92.347000 2760 3541 1 chr1B.!!$F1 781
15 TraesCS6B01G355900 chr5B 591499045 591499823 778 True 1112.000000 1112 92.446000 2765 3544 1 chr5B.!!$R1 779
16 TraesCS6B01G355900 chr5B 634075479 634076262 783 False 1099.000000 1099 92.112000 2764 3541 1 chr5B.!!$F1 777
17 TraesCS6B01G355900 chr2A 92426974 92427748 774 False 1112.000000 1112 92.564000 2764 3541 1 chr2A.!!$F1 777
18 TraesCS6B01G355900 chr6A 559002160 559003585 1425 True 752.000000 900 89.299500 1000 2545 2 chr6A.!!$R1 1545
19 TraesCS6B01G355900 chr6A 559132107 559134448 2341 True 672.666667 898 89.573333 25 2544 3 chr6A.!!$R3 2519
20 TraesCS6B01G355900 chr6A 559018929 559020047 1118 True 576.000000 754 91.567500 1248 2544 2 chr6A.!!$R2 1296
21 TraesCS6B01G355900 chr6A 559167119 559169622 2503 True 525.000000 1055 85.403000 4 2770 4 chr6A.!!$R4 2766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
459 1813 0.178767 TTGACCCTGCATGGAGATCG 59.821 55.0 16.85 5.15 38.35 3.69 F
928 4501 0.319383 ACACACTCTCTGCTTCAGCG 60.319 55.0 0.00 0.00 45.83 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1782 5931 0.517316 GTGATTCCAGTCGTGTTGGC 59.483 55.0 0.00 0.0 35.62 4.52 R
2676 6886 0.755327 ATGCCCGGAATTTAGTGCCC 60.755 55.0 0.73 0.0 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
255 882 7.241042 TCATCAACACTACTTAGGTTAGCTT 57.759 36.000 0.00 0.00 0.00 3.74
367 1721 4.886489 ACTCGTCCACTTAGGTTAGGTATC 59.114 45.833 0.00 0.00 39.02 2.24
370 1724 6.058183 TCGTCCACTTAGGTTAGGTATCTAC 58.942 44.000 0.00 0.00 39.02 2.59
371 1725 5.824624 CGTCCACTTAGGTTAGGTATCTACA 59.175 44.000 0.00 0.00 39.02 2.74
374 1728 7.559170 GTCCACTTAGGTTAGGTATCTACAGAA 59.441 40.741 0.00 0.00 39.02 3.02
375 1729 8.287350 TCCACTTAGGTTAGGTATCTACAGAAT 58.713 37.037 0.00 0.00 39.02 2.40
394 1748 6.320164 ACAGAATCAGCTAAGTCTTAGTCGAT 59.680 38.462 18.72 16.63 35.66 3.59
428 1782 8.466617 AGTTATATCTAACAGTCCAAGTCGAT 57.533 34.615 4.07 0.00 39.81 3.59
429 1783 8.353684 AGTTATATCTAACAGTCCAAGTCGATG 58.646 37.037 4.07 0.00 39.81 3.84
430 1784 3.232213 TCTAACAGTCCAAGTCGATGC 57.768 47.619 0.00 0.00 0.00 3.91
431 1785 2.826128 TCTAACAGTCCAAGTCGATGCT 59.174 45.455 0.00 0.00 0.00 3.79
432 1786 4.014406 TCTAACAGTCCAAGTCGATGCTA 58.986 43.478 0.00 0.00 0.00 3.49
433 1787 3.895232 AACAGTCCAAGTCGATGCTAT 57.105 42.857 0.00 0.00 0.00 2.97
434 1788 5.826208 TCTAACAGTCCAAGTCGATGCTATA 59.174 40.000 0.00 0.00 0.00 1.31
435 1789 5.537300 AACAGTCCAAGTCGATGCTATAT 57.463 39.130 0.00 0.00 0.00 0.86
436 1790 5.537300 ACAGTCCAAGTCGATGCTATATT 57.463 39.130 0.00 0.00 0.00 1.28
437 1791 5.918608 ACAGTCCAAGTCGATGCTATATTT 58.081 37.500 0.00 0.00 0.00 1.40
438 1792 5.755375 ACAGTCCAAGTCGATGCTATATTTG 59.245 40.000 0.00 0.00 0.00 2.32
439 1793 5.755375 CAGTCCAAGTCGATGCTATATTTGT 59.245 40.000 0.00 0.00 0.00 2.83
440 1794 6.258727 CAGTCCAAGTCGATGCTATATTTGTT 59.741 38.462 0.00 0.00 0.00 2.83
441 1795 6.823689 AGTCCAAGTCGATGCTATATTTGTTT 59.176 34.615 0.00 0.00 0.00 2.83
442 1796 6.907212 GTCCAAGTCGATGCTATATTTGTTTG 59.093 38.462 0.00 0.00 0.00 2.93
443 1797 6.821160 TCCAAGTCGATGCTATATTTGTTTGA 59.179 34.615 0.00 0.00 0.00 2.69
444 1798 6.907212 CCAAGTCGATGCTATATTTGTTTGAC 59.093 38.462 0.00 0.00 0.00 3.18
445 1799 6.604735 AGTCGATGCTATATTTGTTTGACC 57.395 37.500 0.00 0.00 0.00 4.02
446 1800 5.527582 AGTCGATGCTATATTTGTTTGACCC 59.472 40.000 0.00 0.00 0.00 4.46
447 1801 5.527582 GTCGATGCTATATTTGTTTGACCCT 59.472 40.000 0.00 0.00 0.00 4.34
448 1802 5.527214 TCGATGCTATATTTGTTTGACCCTG 59.473 40.000 0.00 0.00 0.00 4.45
449 1803 4.981806 TGCTATATTTGTTTGACCCTGC 57.018 40.909 0.00 0.00 0.00 4.85
450 1804 4.339748 TGCTATATTTGTTTGACCCTGCA 58.660 39.130 0.00 0.00 0.00 4.41
451 1805 4.955450 TGCTATATTTGTTTGACCCTGCAT 59.045 37.500 0.00 0.00 0.00 3.96
452 1806 5.163530 TGCTATATTTGTTTGACCCTGCATG 60.164 40.000 0.00 0.00 0.00 4.06
453 1807 4.741321 ATATTTGTTTGACCCTGCATGG 57.259 40.909 6.46 6.46 0.00 3.66
454 1808 2.079170 TTTGTTTGACCCTGCATGGA 57.921 45.000 15.66 0.00 38.35 3.41
455 1809 1.619654 TTGTTTGACCCTGCATGGAG 58.380 50.000 15.66 7.35 38.35 3.86
456 1810 0.770499 TGTTTGACCCTGCATGGAGA 59.230 50.000 16.85 0.00 38.35 3.71
457 1811 1.355381 TGTTTGACCCTGCATGGAGAT 59.645 47.619 16.85 2.98 38.35 2.75
458 1812 2.019984 GTTTGACCCTGCATGGAGATC 58.980 52.381 16.85 12.97 38.35 2.75
459 1813 0.178767 TTGACCCTGCATGGAGATCG 59.821 55.000 16.85 5.15 38.35 3.69
460 1814 1.070445 GACCCTGCATGGAGATCGG 59.930 63.158 16.85 10.99 38.35 4.18
461 1815 1.690219 GACCCTGCATGGAGATCGGT 61.690 60.000 16.85 14.31 38.35 4.69
462 1816 1.227764 CCCTGCATGGAGATCGGTG 60.228 63.158 16.85 0.00 38.35 4.94
463 1817 1.890979 CCTGCATGGAGATCGGTGC 60.891 63.158 16.85 7.43 38.35 5.01
464 1818 2.202919 TGCATGGAGATCGGTGCG 60.203 61.111 0.00 0.00 40.34 5.34
465 1819 2.106938 GCATGGAGATCGGTGCGA 59.893 61.111 0.00 0.00 41.13 5.10
467 1821 0.882042 GCATGGAGATCGGTGCGATT 60.882 55.000 0.00 0.00 47.00 3.34
468 1822 1.586422 CATGGAGATCGGTGCGATTT 58.414 50.000 0.00 0.00 47.00 2.17
469 1823 1.942657 CATGGAGATCGGTGCGATTTT 59.057 47.619 0.00 0.00 47.00 1.82
470 1824 2.107950 TGGAGATCGGTGCGATTTTT 57.892 45.000 0.00 0.00 47.00 1.94
525 1879 8.307921 ACTCCTTTCGTCTTAAAATAAGTGAC 57.692 34.615 0.00 0.00 0.00 3.67
526 1880 8.148999 ACTCCTTTCGTCTTAAAATAAGTGACT 58.851 33.333 0.00 0.00 0.00 3.41
527 1881 8.530269 TCCTTTCGTCTTAAAATAAGTGACTC 57.470 34.615 0.00 0.00 0.00 3.36
528 1882 8.145767 TCCTTTCGTCTTAAAATAAGTGACTCA 58.854 33.333 0.00 0.00 0.00 3.41
529 1883 8.770828 CCTTTCGTCTTAAAATAAGTGACTCAA 58.229 33.333 0.00 0.00 0.00 3.02
530 1884 9.582223 CTTTCGTCTTAAAATAAGTGACTCAAC 57.418 33.333 0.00 0.00 0.00 3.18
531 1885 8.882415 TTCGTCTTAAAATAAGTGACTCAACT 57.118 30.769 0.00 0.00 0.00 3.16
532 1886 8.882415 TCGTCTTAAAATAAGTGACTCAACTT 57.118 30.769 0.00 0.00 42.89 2.66
533 1887 9.321562 TCGTCTTAAAATAAGTGACTCAACTTT 57.678 29.630 0.00 0.00 40.77 2.66
544 1898 8.958119 AAGTGACTCAACTTTACACTAATTGA 57.042 30.769 0.00 0.00 40.23 2.57
545 1899 8.958119 AGTGACTCAACTTTACACTAATTGAA 57.042 30.769 0.00 0.00 39.52 2.69
546 1900 9.046296 AGTGACTCAACTTTACACTAATTGAAG 57.954 33.333 0.00 0.00 39.52 3.02
547 1901 9.042008 GTGACTCAACTTTACACTAATTGAAGA 57.958 33.333 0.00 0.00 0.00 2.87
548 1902 9.778741 TGACTCAACTTTACACTAATTGAAGAT 57.221 29.630 0.00 0.00 0.00 2.40
574 1928 8.421673 AAAGTTAGTGTAAAGTTGAGTCACTC 57.578 34.615 0.00 0.00 39.54 3.51
579 1933 7.251704 AGTGTAAAGTTGAGTCACTCATTTG 57.748 36.000 8.74 0.00 40.39 2.32
580 1934 6.260936 AGTGTAAAGTTGAGTCACTCATTTGG 59.739 38.462 8.74 0.00 40.39 3.28
583 1937 3.744660 AGTTGAGTCACTCATTTGGGAC 58.255 45.455 8.74 2.40 40.39 4.46
584 1938 2.455674 TGAGTCACTCATTTGGGACG 57.544 50.000 2.36 0.00 35.39 4.79
591 1946 0.618458 CTCATTTGGGACGGAGGGAA 59.382 55.000 0.00 0.00 0.00 3.97
630 1985 7.461182 AATTGAGTCATTTATTTTGGGACGA 57.539 32.000 0.00 0.00 33.84 4.20
633 1988 5.106317 TGAGTCATTTATTTTGGGACGAAGC 60.106 40.000 0.00 0.00 33.84 3.86
653 2008 7.226325 ACGAAGCGAGTACTAGTATATCACTTT 59.774 37.037 16.31 9.01 38.80 2.66
670 2030 2.438021 ACTTTACTGAGACCTTGCCACA 59.562 45.455 0.00 0.00 0.00 4.17
673 2033 1.302832 CTGAGACCTTGCCACACCC 60.303 63.158 0.00 0.00 0.00 4.61
683 2043 4.082523 CCACACCCGCGTCTCCAT 62.083 66.667 4.92 0.00 0.00 3.41
684 2044 2.509336 CACACCCGCGTCTCCATC 60.509 66.667 4.92 0.00 0.00 3.51
685 2045 2.994995 ACACCCGCGTCTCCATCA 60.995 61.111 4.92 0.00 0.00 3.07
686 2046 2.202797 CACCCGCGTCTCCATCAG 60.203 66.667 4.92 0.00 0.00 2.90
687 2047 3.461773 ACCCGCGTCTCCATCAGG 61.462 66.667 4.92 0.00 0.00 3.86
688 2048 4.227134 CCCGCGTCTCCATCAGGG 62.227 72.222 4.92 0.00 34.83 4.45
689 2049 3.461773 CCGCGTCTCCATCAGGGT 61.462 66.667 4.92 0.00 38.11 4.34
690 2050 2.125326 CCGCGTCTCCATCAGGGTA 61.125 63.158 4.92 0.00 38.11 3.69
691 2051 1.464376 CCGCGTCTCCATCAGGGTAT 61.464 60.000 4.92 0.00 38.11 2.73
794 2391 4.445545 GGCACGCACGCTGCTAAC 62.446 66.667 14.11 0.00 42.25 2.34
796 2393 2.092291 GCACGCACGCTGCTAACTA 61.092 57.895 0.00 0.00 42.25 2.24
797 2394 1.623081 GCACGCACGCTGCTAACTAA 61.623 55.000 0.00 0.00 42.25 2.24
799 2396 1.005975 CACGCACGCTGCTAACTAATC 60.006 52.381 0.00 0.00 42.25 1.75
801 2398 1.518929 CGCACGCTGCTAACTAATCTC 59.481 52.381 0.00 0.00 42.25 2.75
803 2400 2.798680 CACGCTGCTAACTAATCTCGT 58.201 47.619 0.00 0.00 0.00 4.18
837 4376 4.033817 AGCTGTGTCGTAATCTCGTAGTAC 59.966 45.833 0.00 0.00 0.00 2.73
928 4501 0.319383 ACACACTCTCTGCTTCAGCG 60.319 55.000 0.00 0.00 45.83 5.18
962 4551 2.230025 CACGCATACAGATAGGGAGAGG 59.770 54.545 0.00 0.00 0.00 3.69
1415 5085 2.204034 TGGACTGGGAGAGCACCA 59.796 61.111 0.00 0.00 36.38 4.17
1490 5164 2.150218 CACTACAGGTACGCACGCG 61.150 63.158 10.36 10.36 46.03 6.01
1659 5548 3.202906 TGCTTTTTACTGACGAAGCAGT 58.797 40.909 13.07 13.07 46.65 4.40
1775 5924 7.500559 GGCACATCAGAATCCTAATTAAGAACT 59.499 37.037 0.00 0.00 0.00 3.01
1804 5957 2.480419 CCAACACGACTGGAATCACTTC 59.520 50.000 0.00 0.00 35.85 3.01
1862 6037 0.111398 GCCTTTTTCGTGTCGTCGTC 60.111 55.000 0.00 0.00 0.00 4.20
1866 6041 0.935831 TTTTCGTGTCGTCGTCGCAT 60.936 50.000 0.00 0.00 36.96 4.73
1867 6042 0.935831 TTTCGTGTCGTCGTCGCATT 60.936 50.000 0.00 0.00 36.96 3.56
1868 6043 0.935831 TTCGTGTCGTCGTCGCATTT 60.936 50.000 0.00 0.00 36.96 2.32
1869 6044 0.935831 TCGTGTCGTCGTCGCATTTT 60.936 50.000 0.00 0.00 36.96 1.82
2483 6661 2.876879 CGTGCGCCACAAGTTCGAA 61.877 57.895 4.18 0.00 33.40 3.71
2571 6764 4.466370 TGACCGGACAAGAGTATTTGAGAT 59.534 41.667 9.46 0.00 0.00 2.75
2574 6767 5.421056 ACCGGACAAGAGTATTTGAGATGTA 59.579 40.000 9.46 0.00 0.00 2.29
2616 6809 3.134985 TGCCATGTATCCGGTTAGCTTTA 59.865 43.478 0.00 0.00 0.00 1.85
2617 6810 4.202419 TGCCATGTATCCGGTTAGCTTTAT 60.202 41.667 0.00 0.00 0.00 1.40
2618 6811 4.760204 GCCATGTATCCGGTTAGCTTTATT 59.240 41.667 0.00 0.00 0.00 1.40
2619 6812 5.334879 GCCATGTATCCGGTTAGCTTTATTG 60.335 44.000 0.00 0.00 0.00 1.90
2620 6813 5.334879 CCATGTATCCGGTTAGCTTTATTGC 60.335 44.000 0.00 0.00 0.00 3.56
2621 6814 5.031066 TGTATCCGGTTAGCTTTATTGCT 57.969 39.130 0.00 0.00 46.11 3.91
2622 6815 5.433526 TGTATCCGGTTAGCTTTATTGCTT 58.566 37.500 0.00 0.00 43.74 3.91
2623 6816 6.584488 TGTATCCGGTTAGCTTTATTGCTTA 58.416 36.000 0.00 0.00 43.74 3.09
2624 6817 7.221450 TGTATCCGGTTAGCTTTATTGCTTAT 58.779 34.615 0.00 0.00 43.74 1.73
2625 6818 8.369424 TGTATCCGGTTAGCTTTATTGCTTATA 58.631 33.333 0.00 0.00 43.74 0.98
2626 6819 9.211485 GTATCCGGTTAGCTTTATTGCTTATAA 57.789 33.333 0.00 0.00 43.74 0.98
2627 6820 8.685838 ATCCGGTTAGCTTTATTGCTTATAAA 57.314 30.769 0.00 5.05 43.74 1.40
2628 6821 8.508883 TCCGGTTAGCTTTATTGCTTATAAAA 57.491 30.769 0.00 0.00 43.74 1.52
2629 6822 8.958506 TCCGGTTAGCTTTATTGCTTATAAAAA 58.041 29.630 0.00 0.00 43.74 1.94
2674 6884 3.057174 AGTCCGACTCACAGATTCTTGTC 60.057 47.826 0.00 0.00 0.00 3.18
2675 6885 2.231478 TCCGACTCACAGATTCTTGTCC 59.769 50.000 0.00 0.00 0.00 4.02
2676 6886 2.254459 CGACTCACAGATTCTTGTCCG 58.746 52.381 0.00 0.00 0.00 4.79
2677 6887 2.611518 GACTCACAGATTCTTGTCCGG 58.388 52.381 0.00 0.00 0.00 5.14
2678 6888 1.276421 ACTCACAGATTCTTGTCCGGG 59.724 52.381 0.00 0.00 0.00 5.73
2679 6889 0.036388 TCACAGATTCTTGTCCGGGC 60.036 55.000 0.00 0.00 0.00 6.13
2680 6890 0.321564 CACAGATTCTTGTCCGGGCA 60.322 55.000 3.51 3.51 0.00 5.36
2681 6891 0.321653 ACAGATTCTTGTCCGGGCAC 60.322 55.000 9.15 0.00 0.00 5.01
2682 6892 0.036010 CAGATTCTTGTCCGGGCACT 60.036 55.000 9.15 0.00 0.00 4.40
2683 6893 1.207089 CAGATTCTTGTCCGGGCACTA 59.793 52.381 9.15 0.00 0.00 2.74
2684 6894 1.906574 AGATTCTTGTCCGGGCACTAA 59.093 47.619 9.15 6.46 0.00 2.24
2685 6895 2.304761 AGATTCTTGTCCGGGCACTAAA 59.695 45.455 9.15 3.39 0.00 1.85
2686 6896 2.871096 TTCTTGTCCGGGCACTAAAT 57.129 45.000 9.15 0.00 0.00 1.40
2687 6897 2.871096 TCTTGTCCGGGCACTAAATT 57.129 45.000 9.15 0.00 0.00 1.82
2775 7142 9.042008 GGTGACGTTTGACATGTTAGATAATAT 57.958 33.333 0.00 0.00 0.00 1.28
2864 7233 1.080705 ACGAAGGCGCAGTCACTAC 60.081 57.895 10.83 0.00 42.48 2.73
2868 7241 2.202623 GGCGCAGTCACTACGAGG 60.203 66.667 10.83 0.00 0.00 4.63
2869 7242 2.697761 GGCGCAGTCACTACGAGGA 61.698 63.158 10.83 0.00 0.00 3.71
2870 7243 1.433879 GCGCAGTCACTACGAGGAT 59.566 57.895 0.19 0.00 0.00 3.24
2895 7268 2.717580 TTACAAGCACGAGACGACAT 57.282 45.000 0.00 0.00 0.00 3.06
2897 7270 2.941453 ACAAGCACGAGACGACATAT 57.059 45.000 0.00 0.00 0.00 1.78
2927 7300 3.368116 GGTGCGACTACATGGGGTATATC 60.368 52.174 0.00 0.00 0.00 1.63
2996 7370 1.081509 GTACGCGTCGGTACCAACA 60.082 57.895 18.63 0.00 37.41 3.33
3002 7377 0.863144 CGTCGGTACCAACACAAAGG 59.137 55.000 13.54 0.00 0.00 3.11
3015 7390 2.310349 ACACAAAGGCCCACACCATATA 59.690 45.455 0.00 0.00 0.00 0.86
3024 7399 6.508477 AGGCCCACACCATATATACTACATA 58.492 40.000 0.00 0.00 0.00 2.29
3100 7475 2.678336 CCAAATTCCCTCAAGTAGTCGC 59.322 50.000 0.00 0.00 0.00 5.19
3106 7481 2.832129 TCCCTCAAGTAGTCGCAGAAAT 59.168 45.455 0.00 0.00 39.69 2.17
3138 7513 5.015515 TCCATCCAAATCAGCATAAACACA 58.984 37.500 0.00 0.00 0.00 3.72
3144 7519 6.015603 TCCAAATCAGCATAAACACATTGTGA 60.016 34.615 23.12 1.31 36.96 3.58
3220 7599 3.335579 ACTTATTGGTCGAAACTGGCTC 58.664 45.455 0.00 0.00 0.00 4.70
3282 7661 4.458989 TGCATACCTTCAAATCACCTTCAC 59.541 41.667 0.00 0.00 0.00 3.18
3285 7664 3.222603 ACCTTCAAATCACCTTCACCAC 58.777 45.455 0.00 0.00 0.00 4.16
3302 7681 5.842907 TCACCACCAACATCTCGAATATAG 58.157 41.667 0.00 0.00 0.00 1.31
3341 7720 2.880268 TGTGCTTTGTTCTCTCATGGTG 59.120 45.455 0.00 0.00 0.00 4.17
3461 7840 2.950309 AGATAGCTTCTTTGCATGCCTG 59.050 45.455 16.68 5.26 34.99 4.85
3463 7842 1.624336 AGCTTCTTTGCATGCCTGAA 58.376 45.000 16.68 14.83 34.99 3.02
3490 7869 7.724490 ATAGCCATATACTCAGCATCAGTAA 57.276 36.000 0.00 0.00 30.11 2.24
3495 7874 7.040494 CCATATACTCAGCATCAGTAATGGAG 58.960 42.308 16.04 0.00 37.29 3.86
3541 7920 1.878088 CTCTGCAACTCACAGCACAAT 59.122 47.619 0.00 0.00 36.62 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
367 1721 7.011576 TCGACTAAGACTTAGCTGATTCTGTAG 59.988 40.741 20.05 5.27 36.71 2.74
370 1724 6.125327 TCGACTAAGACTTAGCTGATTCTG 57.875 41.667 20.05 8.10 36.71 3.02
371 1725 6.952773 ATCGACTAAGACTTAGCTGATTCT 57.047 37.500 20.05 0.00 36.71 2.40
374 1728 6.544197 TCTCAATCGACTAAGACTTAGCTGAT 59.456 38.462 20.05 18.70 36.71 2.90
375 1729 5.880887 TCTCAATCGACTAAGACTTAGCTGA 59.119 40.000 20.05 17.50 36.71 4.26
409 1763 3.449018 AGCATCGACTTGGACTGTTAGAT 59.551 43.478 0.00 0.00 0.00 1.98
415 1769 5.755375 ACAAATATAGCATCGACTTGGACTG 59.245 40.000 0.00 0.00 0.00 3.51
423 1777 5.527582 AGGGTCAAACAAATATAGCATCGAC 59.472 40.000 0.00 0.00 0.00 4.20
425 1779 5.751680 CAGGGTCAAACAAATATAGCATCG 58.248 41.667 0.00 0.00 0.00 3.84
428 1782 4.339748 TGCAGGGTCAAACAAATATAGCA 58.660 39.130 0.00 0.00 0.00 3.49
429 1783 4.981806 TGCAGGGTCAAACAAATATAGC 57.018 40.909 0.00 0.00 0.00 2.97
430 1784 5.593909 TCCATGCAGGGTCAAACAAATATAG 59.406 40.000 18.43 0.00 38.24 1.31
431 1785 5.514169 TCCATGCAGGGTCAAACAAATATA 58.486 37.500 18.43 0.00 38.24 0.86
432 1786 4.352009 TCCATGCAGGGTCAAACAAATAT 58.648 39.130 18.43 0.00 38.24 1.28
433 1787 3.763360 CTCCATGCAGGGTCAAACAAATA 59.237 43.478 18.43 0.00 38.24 1.40
434 1788 2.564062 CTCCATGCAGGGTCAAACAAAT 59.436 45.455 18.43 0.00 38.24 2.32
435 1789 1.962807 CTCCATGCAGGGTCAAACAAA 59.037 47.619 18.43 0.00 38.24 2.83
436 1790 1.144708 TCTCCATGCAGGGTCAAACAA 59.855 47.619 18.43 0.00 38.24 2.83
437 1791 0.770499 TCTCCATGCAGGGTCAAACA 59.230 50.000 18.43 0.00 38.24 2.83
438 1792 2.019984 GATCTCCATGCAGGGTCAAAC 58.980 52.381 18.43 3.16 38.24 2.93
439 1793 1.407299 CGATCTCCATGCAGGGTCAAA 60.407 52.381 18.43 1.74 38.24 2.69
440 1794 0.178767 CGATCTCCATGCAGGGTCAA 59.821 55.000 18.43 4.41 38.24 3.18
441 1795 1.689243 CCGATCTCCATGCAGGGTCA 61.689 60.000 18.43 5.34 38.24 4.02
442 1796 1.070445 CCGATCTCCATGCAGGGTC 59.930 63.158 18.43 6.87 38.24 4.46
443 1797 1.690633 ACCGATCTCCATGCAGGGT 60.691 57.895 18.43 0.00 38.24 4.34
444 1798 1.227764 CACCGATCTCCATGCAGGG 60.228 63.158 12.23 12.23 38.24 4.45
445 1799 1.890979 GCACCGATCTCCATGCAGG 60.891 63.158 0.00 0.00 38.00 4.85
446 1800 2.242572 CGCACCGATCTCCATGCAG 61.243 63.158 0.00 0.00 37.97 4.41
447 1801 2.031674 ATCGCACCGATCTCCATGCA 62.032 55.000 0.00 0.00 43.45 3.96
448 1802 0.882042 AATCGCACCGATCTCCATGC 60.882 55.000 0.19 0.00 46.30 4.06
449 1803 1.586422 AAATCGCACCGATCTCCATG 58.414 50.000 0.19 0.00 46.30 3.66
450 1804 2.332063 AAAATCGCACCGATCTCCAT 57.668 45.000 0.19 0.00 46.30 3.41
451 1805 2.107950 AAAAATCGCACCGATCTCCA 57.892 45.000 0.19 0.00 46.30 3.86
499 1853 9.415544 GTCACTTATTTTAAGACGAAAGGAGTA 57.584 33.333 0.00 0.00 0.00 2.59
500 1854 8.148999 AGTCACTTATTTTAAGACGAAAGGAGT 58.851 33.333 0.00 0.00 34.56 3.85
501 1855 8.535690 AGTCACTTATTTTAAGACGAAAGGAG 57.464 34.615 0.00 0.00 34.56 3.69
502 1856 8.145767 TGAGTCACTTATTTTAAGACGAAAGGA 58.854 33.333 0.00 0.00 34.56 3.36
503 1857 8.306680 TGAGTCACTTATTTTAAGACGAAAGG 57.693 34.615 0.00 0.00 34.56 3.11
504 1858 9.582223 GTTGAGTCACTTATTTTAAGACGAAAG 57.418 33.333 0.00 0.00 34.56 2.62
505 1859 9.321562 AGTTGAGTCACTTATTTTAAGACGAAA 57.678 29.630 0.00 0.00 34.56 3.46
506 1860 8.882415 AGTTGAGTCACTTATTTTAAGACGAA 57.118 30.769 0.00 0.00 34.56 3.85
507 1861 8.882415 AAGTTGAGTCACTTATTTTAAGACGA 57.118 30.769 0.00 0.00 35.10 4.20
519 1873 8.958119 TCAATTAGTGTAAAGTTGAGTCACTT 57.042 30.769 0.00 0.00 39.54 3.16
520 1874 8.958119 TTCAATTAGTGTAAAGTTGAGTCACT 57.042 30.769 0.00 0.00 41.32 3.41
521 1875 9.042008 TCTTCAATTAGTGTAAAGTTGAGTCAC 57.958 33.333 0.00 0.00 31.28 3.67
522 1876 9.778741 ATCTTCAATTAGTGTAAAGTTGAGTCA 57.221 29.630 0.00 0.00 31.28 3.41
548 1902 9.525409 GAGTGACTCAACTTTACACTAACTTTA 57.475 33.333 7.90 0.00 41.01 1.85
549 1903 8.038944 TGAGTGACTCAACTTTACACTAACTTT 58.961 33.333 13.74 0.00 41.01 2.66
550 1904 7.553334 TGAGTGACTCAACTTTACACTAACTT 58.447 34.615 13.74 0.00 41.01 2.66
574 1928 3.290948 TTATTCCCTCCGTCCCAAATG 57.709 47.619 0.00 0.00 0.00 2.32
579 1933 3.453717 ACTAACTTTATTCCCTCCGTCCC 59.546 47.826 0.00 0.00 0.00 4.46
580 1934 4.081254 ACACTAACTTTATTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
583 1937 7.910441 TTTTACACTAACTTTATTCCCTCCG 57.090 36.000 0.00 0.00 0.00 4.63
616 1971 3.404899 ACTCGCTTCGTCCCAAAATAAA 58.595 40.909 0.00 0.00 0.00 1.40
626 1981 6.365789 AGTGATATACTAGTACTCGCTTCGTC 59.634 42.308 18.19 0.00 38.04 4.20
630 1985 9.558396 AGTAAAGTGATATACTAGTACTCGCTT 57.442 33.333 24.20 24.20 39.18 4.68
653 2008 0.685097 GGTGTGGCAAGGTCTCAGTA 59.315 55.000 0.00 0.00 0.00 2.74
670 2030 3.461773 CCTGATGGAGACGCGGGT 61.462 66.667 12.47 4.12 34.57 5.28
673 2033 1.244816 TATACCCTGATGGAGACGCG 58.755 55.000 3.53 3.53 38.00 6.01
684 2044 8.887717 GCTTCTTGCTAATCAATATATACCCTG 58.112 37.037 0.00 0.00 38.95 4.45
685 2045 7.766278 CGCTTCTTGCTAATCAATATATACCCT 59.234 37.037 0.00 0.00 40.11 4.34
686 2046 7.764443 TCGCTTCTTGCTAATCAATATATACCC 59.236 37.037 0.00 0.00 40.11 3.69
687 2047 8.703604 TCGCTTCTTGCTAATCAATATATACC 57.296 34.615 0.00 0.00 40.11 2.73
691 2051 8.820933 GCATATCGCTTCTTGCTAATCAATATA 58.179 33.333 0.00 0.00 40.11 0.86
716 2076 3.740115 TCTAACCAAGTTGTCTCCAAGC 58.260 45.455 1.45 0.00 0.00 4.01
794 2391 9.444534 CACAGCTTATATGCTATACGAGATTAG 57.555 37.037 12.39 0.00 41.98 1.73
796 2393 7.831753 ACACAGCTTATATGCTATACGAGATT 58.168 34.615 12.39 0.00 41.98 2.40
797 2394 7.397892 ACACAGCTTATATGCTATACGAGAT 57.602 36.000 12.39 0.00 41.98 2.75
799 2396 5.734963 CGACACAGCTTATATGCTATACGAG 59.265 44.000 12.39 2.94 41.98 4.18
801 2398 5.391449 ACGACACAGCTTATATGCTATACG 58.609 41.667 12.39 15.78 41.98 3.06
803 2400 8.957466 AGATTACGACACAGCTTATATGCTATA 58.043 33.333 12.39 0.00 41.98 1.31
928 4501 1.577328 ATGCGTGCTTGTGCTGGTAC 61.577 55.000 0.00 0.00 40.48 3.34
962 4551 3.624410 GTCTCTCTCCGTCTTTCTACTCC 59.376 52.174 0.00 0.00 0.00 3.85
1361 5031 3.854669 CTTCTCGCCGGCCTCCAT 61.855 66.667 23.46 0.00 0.00 3.41
1395 5065 3.695606 TGCTCTCCCAGTCCACGC 61.696 66.667 0.00 0.00 0.00 5.34
1415 5085 2.722201 GGAGGTGGCGGACGAAGAT 61.722 63.158 0.00 0.00 0.00 2.40
1441 5111 3.766691 GGCAGGTCGGCGAGGTTA 61.767 66.667 11.20 0.00 33.57 2.85
1490 5164 8.982925 AGTTAATTAATTAAGTAATCACGCGC 57.017 30.769 21.55 0.00 34.93 6.86
1775 5924 1.271379 CCAGTCGTGTTGGCTACTACA 59.729 52.381 0.01 0.00 0.00 2.74
1782 5931 0.517316 GTGATTCCAGTCGTGTTGGC 59.483 55.000 0.00 0.00 35.62 4.52
2219 6394 1.374125 CTGGTCGCCGATGTTGACA 60.374 57.895 0.00 0.00 34.32 3.58
2392 6567 2.182030 CGCCCTCGTTCCTCTCAC 59.818 66.667 0.00 0.00 0.00 3.51
2483 6661 3.553095 GAACCGTGGCTCCTTGGCT 62.553 63.158 0.00 0.00 42.34 4.75
2571 6764 7.382759 GGCACGTCCAAAAGAAAATAAAATACA 59.617 33.333 0.00 0.00 34.01 2.29
2574 6767 6.284459 TGGCACGTCCAAAAGAAAATAAAAT 58.716 32.000 4.51 0.00 43.21 1.82
2591 6784 0.825410 TAACCGGATACATGGCACGT 59.175 50.000 9.46 0.00 0.00 4.49
2627 6820 9.801873 CTCGAAAATACATTACCCATGATTTTT 57.198 29.630 0.00 0.00 35.26 1.94
2628 6821 8.966868 ACTCGAAAATACATTACCCATGATTTT 58.033 29.630 0.00 0.00 36.43 1.82
2629 6822 8.519799 ACTCGAAAATACATTACCCATGATTT 57.480 30.769 0.00 0.00 36.24 2.17
2630 6823 7.228706 GGACTCGAAAATACATTACCCATGATT 59.771 37.037 0.00 0.00 36.24 2.57
2631 6824 6.710744 GGACTCGAAAATACATTACCCATGAT 59.289 38.462 0.00 0.00 36.24 2.45
2632 6825 6.053005 GGACTCGAAAATACATTACCCATGA 58.947 40.000 0.00 0.00 36.24 3.07
2633 6826 5.050363 CGGACTCGAAAATACATTACCCATG 60.050 44.000 0.00 0.00 39.00 3.66
2675 6885 2.478033 GCCCGGAATTTAGTGCCCG 61.478 63.158 0.73 0.00 41.47 6.13
2676 6886 0.755327 ATGCCCGGAATTTAGTGCCC 60.755 55.000 0.73 0.00 0.00 5.36
2677 6887 1.111277 AATGCCCGGAATTTAGTGCC 58.889 50.000 0.73 0.00 0.00 5.01
2678 6888 2.959507 AAATGCCCGGAATTTAGTGC 57.040 45.000 0.73 0.00 0.00 4.40
2679 6889 8.977505 CAAAATATAAATGCCCGGAATTTAGTG 58.022 33.333 20.20 12.50 34.03 2.74
2680 6890 8.700973 ACAAAATATAAATGCCCGGAATTTAGT 58.299 29.630 20.20 12.50 34.03 2.24
2681 6891 8.977505 CACAAAATATAAATGCCCGGAATTTAG 58.022 33.333 20.20 12.07 34.03 1.85
2682 6892 7.928706 CCACAAAATATAAATGCCCGGAATTTA 59.071 33.333 18.74 18.74 34.79 1.40
2683 6893 6.765512 CCACAAAATATAAATGCCCGGAATTT 59.234 34.615 0.73 11.61 0.00 1.82
2684 6894 6.098982 TCCACAAAATATAAATGCCCGGAATT 59.901 34.615 0.73 0.00 0.00 2.17
2685 6895 5.600484 TCCACAAAATATAAATGCCCGGAAT 59.400 36.000 0.73 0.00 0.00 3.01
2686 6896 4.956700 TCCACAAAATATAAATGCCCGGAA 59.043 37.500 0.73 0.00 0.00 4.30
2687 6897 4.537751 TCCACAAAATATAAATGCCCGGA 58.462 39.130 0.73 0.00 0.00 5.14
2775 7142 7.030165 GTCTCTCATGTCTCGTTTATTCTTGA 58.970 38.462 0.00 0.00 0.00 3.02
2793 7161 3.985279 CACGTAAAAATCCGTGTCTCTCA 59.015 43.478 4.17 0.00 46.87 3.27
2835 7204 3.103911 CCTTCGTGCGTCCGTGAC 61.104 66.667 0.00 0.00 0.00 3.67
2857 7226 6.615264 TGTAATACTCATCCTCGTAGTGAC 57.385 41.667 0.00 0.00 0.00 3.67
2864 7233 3.731216 CGTGCTTGTAATACTCATCCTCG 59.269 47.826 0.00 0.00 0.00 4.63
2868 7241 4.438145 CGTCTCGTGCTTGTAATACTCATC 59.562 45.833 0.00 0.00 0.00 2.92
2869 7242 4.095932 TCGTCTCGTGCTTGTAATACTCAT 59.904 41.667 0.00 0.00 0.00 2.90
2870 7243 3.437741 TCGTCTCGTGCTTGTAATACTCA 59.562 43.478 0.00 0.00 0.00 3.41
2895 7268 3.534554 TGTAGTCGCACCTAAGACGATA 58.465 45.455 0.00 0.00 41.86 2.92
2897 7270 1.812235 TGTAGTCGCACCTAAGACGA 58.188 50.000 0.00 0.00 41.86 4.20
2927 7300 4.346418 AGGACTCTTATGTATTGCCCTCAG 59.654 45.833 0.00 0.00 0.00 3.35
2996 7370 3.971468 ATATATGGTGTGGGCCTTTGT 57.029 42.857 4.53 0.00 0.00 2.83
3002 7377 9.144298 ACTATATGTAGTATATATGGTGTGGGC 57.856 37.037 12.97 0.00 39.36 5.36
3106 7481 7.953005 TGCTGATTTGGATGGAGTTATTTAA 57.047 32.000 0.00 0.00 0.00 1.52
3138 7513 5.762179 TCCTATGGACTTTGACTCACAAT 57.238 39.130 0.00 0.00 38.36 2.71
3220 7599 9.668497 ATGATAATCCTGTTGATATGATGACAG 57.332 33.333 0.00 0.00 39.29 3.51
3257 7636 5.538053 TGAAGGTGATTTGAAGGTATGCAAA 59.462 36.000 0.00 0.00 38.25 3.68
3282 7661 4.991056 CACCTATATTCGAGATGTTGGTGG 59.009 45.833 19.11 6.00 38.83 4.61
3285 7664 8.690884 AGATATCACCTATATTCGAGATGTTGG 58.309 37.037 5.32 0.00 30.53 3.77
3302 7681 5.061853 AGCACATTGATGTCAGATATCACC 58.938 41.667 9.28 0.00 39.39 4.02
3409 7788 3.625764 GGTTTGTACACTGAGCTTTGTGA 59.374 43.478 21.54 7.29 37.59 3.58
3461 7840 8.327941 TGATGCTGAGTATATGGCTATTTTTC 57.672 34.615 0.00 0.00 0.00 2.29
3463 7842 7.456725 ACTGATGCTGAGTATATGGCTATTTT 58.543 34.615 0.00 0.00 0.00 1.82
3490 7869 2.240667 AGTCTATTGTGGCTTGCTCCAT 59.759 45.455 0.00 0.00 38.57 3.41
3495 7874 1.167851 TGCAGTCTATTGTGGCTTGC 58.832 50.000 0.00 0.00 0.00 4.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.