Multiple sequence alignment - TraesCS6B01G355500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G355500 chr6B 100.000 6957 0 0 1 6957 623724153 623731109 0.000000e+00 12848.0
1 TraesCS6B01G355500 chr6B 88.333 60 6 1 1501 1560 30643768 30643710 3.480000e-08 71.3
2 TraesCS6B01G355500 chr6B 88.333 60 6 1 1501 1560 30731765 30731707 3.480000e-08 71.3
3 TraesCS6B01G355500 chr6B 88.333 60 6 1 1501 1560 30810711 30810653 3.480000e-08 71.3
4 TraesCS6B01G355500 chr6B 88.333 60 6 1 1501 1560 30873858 30873800 3.480000e-08 71.3
5 TraesCS6B01G355500 chr6A 94.673 3191 104 14 2489 5655 558973546 558976694 0.000000e+00 4891.0
6 TraesCS6B01G355500 chr6A 90.000 2380 135 47 121 2460 558971243 558973559 0.000000e+00 2981.0
7 TraesCS6B01G355500 chr6A 86.471 717 46 16 5693 6393 558976694 558977375 0.000000e+00 739.0
8 TraesCS6B01G355500 chr6A 87.311 331 31 9 6450 6776 558977880 558978203 1.100000e-97 368.0
9 TraesCS6B01G355500 chr6A 93.478 46 1 1 6850 6893 558978267 558978312 4.500000e-07 67.6
10 TraesCS6B01G355500 chr6D 95.534 3023 97 9 2489 5497 413987806 413990804 0.000000e+00 4800.0
11 TraesCS6B01G355500 chr6D 88.278 2056 110 52 121 2137 413985142 413987105 0.000000e+00 2340.0
12 TraesCS6B01G355500 chr6D 86.446 878 46 20 5552 6393 413990910 413991750 0.000000e+00 894.0
13 TraesCS6B01G355500 chr6D 93.982 565 33 1 1896 2459 413987254 413987818 0.000000e+00 854.0
14 TraesCS6B01G355500 chr6D 91.829 514 28 8 6450 6957 413992370 413992875 0.000000e+00 704.0
15 TraesCS6B01G355500 chr6D 80.838 167 22 2 2372 2537 413987103 413987260 9.480000e-24 122.0
16 TraesCS6B01G355500 chrUn 88.366 1126 94 18 3969 5073 302683960 302682851 0.000000e+00 1319.0
17 TraesCS6B01G355500 chrUn 88.188 1126 98 18 3969 5073 292985263 292984152 0.000000e+00 1310.0
18 TraesCS6B01G355500 chr7B 88.366 1126 94 18 3969 5073 604697357 604696248 0.000000e+00 1319.0
19 TraesCS6B01G355500 chr7B 85.986 735 60 18 4355 5073 703162420 703161713 0.000000e+00 747.0
20 TraesCS6B01G355500 chr5B 86.121 1124 97 30 4286 5377 81178632 81179728 0.000000e+00 1157.0
21 TraesCS6B01G355500 chr5B 89.014 355 15 4 3617 3956 81179847 81180192 1.080000e-112 418.0
22 TraesCS6B01G355500 chr5A 86.007 1122 100 31 4286 5377 622110981 622109887 0.000000e+00 1149.0
23 TraesCS6B01G355500 chr5A 85.918 632 67 13 4760 5377 708202563 708203186 0.000000e+00 654.0
24 TraesCS6B01G355500 chr5A 86.492 496 33 12 4286 4766 708193410 708193886 1.340000e-141 514.0
25 TraesCS6B01G355500 chr5A 87.887 355 19 8 3617 3956 708203305 708203650 5.060000e-106 396.0
26 TraesCS6B01G355500 chr5A 87.887 355 17 9 3617 3956 622109768 622109425 1.820000e-105 394.0
27 TraesCS6B01G355500 chr5A 87.952 166 17 2 2206 2369 353073108 353073272 7.120000e-45 193.0
28 TraesCS6B01G355500 chr7A 85.905 1121 101 32 4286 5377 636730504 636729412 0.000000e+00 1142.0
29 TraesCS6B01G355500 chr7A 87.101 721 80 9 4355 5070 619626578 619627290 0.000000e+00 804.0
30 TraesCS6B01G355500 chr7A 88.451 355 17 4 3617 3956 636729293 636728948 2.340000e-109 407.0
31 TraesCS6B01G355500 chr7A 88.608 79 8 1 2296 2373 47559204 47559282 2.070000e-15 95.3
32 TraesCS6B01G355500 chr7A 87.342 79 10 0 2300 2378 10206627 10206705 2.670000e-14 91.6
33 TraesCS6B01G355500 chr2A 85.307 1123 93 32 4286 5377 726586690 726585609 0.000000e+00 1094.0
34 TraesCS6B01G355500 chr2A 87.324 355 21 4 3617 3956 726585490 726585145 1.090000e-102 385.0
35 TraesCS6B01G355500 chr5D 88.235 731 64 11 4355 5070 60188320 60189043 0.000000e+00 854.0
36 TraesCS6B01G355500 chr5D 86.905 168 15 5 2206 2369 265557584 265557748 1.540000e-41 182.0
37 TraesCS6B01G355500 chr5D 84.242 165 23 1 2214 2375 509654989 509655153 2.600000e-34 158.0
38 TraesCS6B01G355500 chr3A 86.933 727 78 12 4355 5073 681058008 681057291 0.000000e+00 800.0
39 TraesCS6B01G355500 chr3A 89.781 137 9 2 1 133 362810230 362810365 3.340000e-38 171.0
40 TraesCS6B01G355500 chr4A 86.584 723 85 8 4355 5073 139190392 139189678 0.000000e+00 787.0
41 TraesCS6B01G355500 chr4D 93.878 196 12 0 3956 4151 65984133 65984328 5.280000e-76 296.0
42 TraesCS6B01G355500 chr4D 90.173 173 17 0 3763 3935 66002595 66002767 7.020000e-55 226.0
43 TraesCS6B01G355500 chr4D 92.763 152 11 0 3617 3768 65984838 65984989 3.270000e-53 220.0
44 TraesCS6B01G355500 chr4D 100.000 28 0 0 5397 5424 106740750 106740777 1.300000e-02 52.8
45 TraesCS6B01G355500 chr1B 80.328 183 34 2 2194 2375 357649225 357649044 3.380000e-28 137.0
46 TraesCS6B01G355500 chr1B 93.333 45 3 0 1516 1560 117455599 117455643 4.500000e-07 67.6
47 TraesCS6B01G355500 chr1D 88.750 80 8 1 5385 5464 189883176 189883098 5.740000e-16 97.1
48 TraesCS6B01G355500 chr2D 95.000 40 2 0 6409 6448 610470836 610470797 5.830000e-06 63.9
49 TraesCS6B01G355500 chr2D 95.000 40 2 0 6409 6448 610493499 610493460 5.830000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G355500 chr6B 623724153 623731109 6956 False 12848.00 12848 100.0000 1 6957 1 chr6B.!!$F1 6956
1 TraesCS6B01G355500 chr6A 558971243 558978312 7069 False 1809.32 4891 90.3866 121 6893 5 chr6A.!!$F1 6772
2 TraesCS6B01G355500 chr6D 413985142 413992875 7733 False 1619.00 4800 89.4845 121 6957 6 chr6D.!!$F1 6836
3 TraesCS6B01G355500 chrUn 302682851 302683960 1109 True 1319.00 1319 88.3660 3969 5073 1 chrUn.!!$R2 1104
4 TraesCS6B01G355500 chrUn 292984152 292985263 1111 True 1310.00 1310 88.1880 3969 5073 1 chrUn.!!$R1 1104
5 TraesCS6B01G355500 chr7B 604696248 604697357 1109 True 1319.00 1319 88.3660 3969 5073 1 chr7B.!!$R1 1104
6 TraesCS6B01G355500 chr7B 703161713 703162420 707 True 747.00 747 85.9860 4355 5073 1 chr7B.!!$R2 718
7 TraesCS6B01G355500 chr5B 81178632 81180192 1560 False 787.50 1157 87.5675 3617 5377 2 chr5B.!!$F1 1760
8 TraesCS6B01G355500 chr5A 622109425 622110981 1556 True 771.50 1149 86.9470 3617 5377 2 chr5A.!!$R1 1760
9 TraesCS6B01G355500 chr5A 708202563 708203650 1087 False 525.00 654 86.9025 3617 5377 2 chr5A.!!$F3 1760
10 TraesCS6B01G355500 chr7A 619626578 619627290 712 False 804.00 804 87.1010 4355 5070 1 chr7A.!!$F3 715
11 TraesCS6B01G355500 chr7A 636728948 636730504 1556 True 774.50 1142 87.1780 3617 5377 2 chr7A.!!$R1 1760
12 TraesCS6B01G355500 chr2A 726585145 726586690 1545 True 739.50 1094 86.3155 3617 5377 2 chr2A.!!$R1 1760
13 TraesCS6B01G355500 chr5D 60188320 60189043 723 False 854.00 854 88.2350 4355 5070 1 chr5D.!!$F1 715
14 TraesCS6B01G355500 chr3A 681057291 681058008 717 True 800.00 800 86.9330 4355 5073 1 chr3A.!!$R1 718
15 TraesCS6B01G355500 chr4A 139189678 139190392 714 True 787.00 787 86.5840 4355 5073 1 chr4A.!!$R1 718
16 TraesCS6B01G355500 chr4D 65984133 65984989 856 False 258.00 296 93.3205 3617 4151 2 chr4D.!!$F3 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.889638 TCGGCCGCAACAATAAACCA 60.890 50.000 23.51 0.0 0.00 3.67 F
347 354 1.241315 CGTCCACATCCAAACCACCC 61.241 60.000 0.00 0.0 0.00 4.61 F
1280 1323 0.455633 CGGGTACGTCTGGTCTTTCG 60.456 60.000 0.00 0.0 34.81 3.46 F
2205 2652 0.098376 GGCAAAGCTGAGCAGAATCG 59.902 55.000 7.39 0.0 0.00 3.34 F
3367 3824 1.001020 ATCAATGGTGGCCGAAGCA 60.001 52.632 0.00 0.0 42.56 3.91 F
4930 5473 0.034896 AGATTTTCCGTGCAGTCCGT 59.965 50.000 0.00 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1246 1289 0.037590 ACCCGATTTGCAAGCTGGTA 59.962 50.000 13.30 0.0 32.43 3.25 R
1336 1380 0.240945 AGAAATTTCCACCGCAAGCG 59.759 50.000 14.61 7.6 39.44 4.68 R
2739 3186 0.251916 TTCTTGGTATCGGGGCACAG 59.748 55.000 0.00 0.0 0.00 3.66 R
3651 4108 1.074889 ACACCCTAACACAATCCCCAC 59.925 52.381 0.00 0.0 0.00 4.61 R
5064 5608 0.310854 CAGAAAAGCACGGGTGTTCC 59.689 55.000 0.25 0.0 0.00 3.62 R
6141 7202 0.464870 CCCTCTGCCTCTCATCTGTG 59.535 60.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.715434 TTTTTACATGGGTTAGAGGCAAC 57.285 39.130 0.00 0.00 0.00 4.17
47 48 2.747989 GGCAACTAACTGAAACTAGCCC 59.252 50.000 0.00 0.00 33.68 5.19
48 49 3.408634 GCAACTAACTGAAACTAGCCCA 58.591 45.455 0.00 0.00 0.00 5.36
49 50 3.818773 GCAACTAACTGAAACTAGCCCAA 59.181 43.478 0.00 0.00 0.00 4.12
50 51 4.320275 GCAACTAACTGAAACTAGCCCAAC 60.320 45.833 0.00 0.00 0.00 3.77
51 52 4.017177 ACTAACTGAAACTAGCCCAACC 57.983 45.455 0.00 0.00 0.00 3.77
52 53 3.651423 ACTAACTGAAACTAGCCCAACCT 59.349 43.478 0.00 0.00 0.00 3.50
53 54 2.568623 ACTGAAACTAGCCCAACCTG 57.431 50.000 0.00 0.00 0.00 4.00
54 55 1.073923 ACTGAAACTAGCCCAACCTGG 59.926 52.381 0.00 0.00 37.25 4.45
55 56 1.073923 CTGAAACTAGCCCAACCTGGT 59.926 52.381 0.00 0.00 35.17 4.00
56 57 1.497286 TGAAACTAGCCCAACCTGGTT 59.503 47.619 6.18 6.18 38.03 3.67
57 58 2.160205 GAAACTAGCCCAACCTGGTTC 58.840 52.381 9.62 0.00 35.78 3.62
58 59 1.446016 AACTAGCCCAACCTGGTTCT 58.554 50.000 9.62 6.80 35.17 3.01
59 60 1.446016 ACTAGCCCAACCTGGTTCTT 58.554 50.000 9.62 0.00 35.17 2.52
60 61 1.780919 ACTAGCCCAACCTGGTTCTTT 59.219 47.619 9.62 0.00 35.17 2.52
61 62 2.177016 ACTAGCCCAACCTGGTTCTTTT 59.823 45.455 9.62 0.00 35.17 2.27
62 63 2.174685 AGCCCAACCTGGTTCTTTTT 57.825 45.000 9.62 0.00 35.17 1.94
63 64 1.762370 AGCCCAACCTGGTTCTTTTTG 59.238 47.619 9.62 0.00 35.17 2.44
64 65 1.760029 GCCCAACCTGGTTCTTTTTGA 59.240 47.619 9.62 0.00 35.17 2.69
65 66 2.224042 GCCCAACCTGGTTCTTTTTGAG 60.224 50.000 9.62 0.00 35.17 3.02
66 67 2.224042 CCCAACCTGGTTCTTTTTGAGC 60.224 50.000 9.62 0.00 35.17 4.26
67 68 2.695147 CCAACCTGGTTCTTTTTGAGCT 59.305 45.455 9.62 0.00 31.35 4.09
68 69 3.888930 CCAACCTGGTTCTTTTTGAGCTA 59.111 43.478 9.62 0.00 31.35 3.32
69 70 4.524328 CCAACCTGGTTCTTTTTGAGCTAT 59.476 41.667 9.62 0.00 31.35 2.97
70 71 5.011023 CCAACCTGGTTCTTTTTGAGCTATT 59.989 40.000 9.62 0.00 31.35 1.73
71 72 6.462909 CCAACCTGGTTCTTTTTGAGCTATTT 60.463 38.462 9.62 0.00 31.35 1.40
72 73 6.089249 ACCTGGTTCTTTTTGAGCTATTTG 57.911 37.500 0.00 0.00 0.00 2.32
73 74 5.833131 ACCTGGTTCTTTTTGAGCTATTTGA 59.167 36.000 0.00 0.00 0.00 2.69
74 75 6.015940 ACCTGGTTCTTTTTGAGCTATTTGAG 60.016 38.462 0.00 0.00 0.00 3.02
75 76 6.015940 CCTGGTTCTTTTTGAGCTATTTGAGT 60.016 38.462 0.00 0.00 0.00 3.41
76 77 7.346751 TGGTTCTTTTTGAGCTATTTGAGTT 57.653 32.000 0.00 0.00 0.00 3.01
77 78 7.425606 TGGTTCTTTTTGAGCTATTTGAGTTC 58.574 34.615 0.00 0.00 36.00 3.01
78 79 7.068103 TGGTTCTTTTTGAGCTATTTGAGTTCA 59.932 33.333 0.00 0.00 43.04 3.18
109 110 9.975218 AATTCAAACTAACACTAACCCTATGAT 57.025 29.630 0.00 0.00 0.00 2.45
110 111 9.614792 ATTCAAACTAACACTAACCCTATGATC 57.385 33.333 0.00 0.00 0.00 2.92
111 112 7.562135 TCAAACTAACACTAACCCTATGATCC 58.438 38.462 0.00 0.00 0.00 3.36
112 113 7.181305 TCAAACTAACACTAACCCTATGATCCA 59.819 37.037 0.00 0.00 0.00 3.41
113 114 7.504926 AACTAACACTAACCCTATGATCCAA 57.495 36.000 0.00 0.00 0.00 3.53
114 115 7.504926 ACTAACACTAACCCTATGATCCAAA 57.495 36.000 0.00 0.00 0.00 3.28
115 116 7.336396 ACTAACACTAACCCTATGATCCAAAC 58.664 38.462 0.00 0.00 0.00 2.93
116 117 5.772393 ACACTAACCCTATGATCCAAACA 57.228 39.130 0.00 0.00 0.00 2.83
117 118 5.745227 ACACTAACCCTATGATCCAAACAG 58.255 41.667 0.00 0.00 0.00 3.16
118 119 5.126067 CACTAACCCTATGATCCAAACAGG 58.874 45.833 0.00 0.00 39.47 4.00
131 132 1.526575 AAACAGGGCCATTGACTGCG 61.527 55.000 6.18 0.00 35.70 5.18
179 180 0.889638 TCGGCCGCAACAATAAACCA 60.890 50.000 23.51 0.00 0.00 3.67
315 316 4.980805 CCCACCACCACGTCACCG 62.981 72.222 0.00 0.00 40.83 4.94
318 319 4.903010 ACCACCACGTCACCGCAC 62.903 66.667 0.00 0.00 37.70 5.34
320 321 4.901123 CACCACGTCACCGCACCA 62.901 66.667 0.00 0.00 37.70 4.17
347 354 1.241315 CGTCCACATCCAAACCACCC 61.241 60.000 0.00 0.00 0.00 4.61
394 401 3.620785 ATCGCCGAGGCTCCATCC 61.621 66.667 9.32 0.00 39.32 3.51
534 547 4.517703 CCGAGACGAGACGACGGC 62.518 72.222 0.00 0.00 42.10 5.68
535 548 3.785499 CGAGACGAGACGACGGCA 61.785 66.667 2.19 0.00 44.44 5.69
536 549 2.098680 GAGACGAGACGACGGCAG 59.901 66.667 2.19 0.00 44.44 4.85
537 550 4.104417 AGACGAGACGACGGCAGC 62.104 66.667 2.19 0.00 44.44 5.25
538 551 4.104417 GACGAGACGACGGCAGCT 62.104 66.667 2.19 0.00 41.34 4.24
539 552 4.406173 ACGAGACGACGGCAGCTG 62.406 66.667 10.11 10.11 37.61 4.24
543 556 4.771356 GACGACGGCAGCTGCGTA 62.771 66.667 31.19 0.00 43.26 4.42
544 557 4.778415 ACGACGGCAGCTGCGTAG 62.778 66.667 31.19 29.17 43.26 3.51
1184 1227 3.134127 GGGAATTCTGGCGCGCTT 61.134 61.111 32.29 17.34 0.00 4.68
1246 1289 3.590824 CGGCATTTCTTCCCGCTT 58.409 55.556 0.00 0.00 35.14 4.68
1272 1315 1.393539 CTTGCAAATCGGGTACGTCTG 59.606 52.381 0.00 0.00 41.85 3.51
1280 1323 0.455633 CGGGTACGTCTGGTCTTTCG 60.456 60.000 0.00 0.00 34.81 3.46
1283 1326 2.546584 GGGTACGTCTGGTCTTTCGTTT 60.547 50.000 0.00 0.00 37.66 3.60
1284 1327 2.728318 GGTACGTCTGGTCTTTCGTTTC 59.272 50.000 0.00 0.00 37.66 2.78
1285 1328 2.884894 ACGTCTGGTCTTTCGTTTCT 57.115 45.000 0.00 0.00 32.62 2.52
1287 1330 4.516365 ACGTCTGGTCTTTCGTTTCTAT 57.484 40.909 0.00 0.00 32.62 1.98
1306 1349 8.695456 GTTTCTATGGGATTGGATGTTTATTGT 58.305 33.333 0.00 0.00 0.00 2.71
1336 1380 3.257933 CGGAGCTTGTGACCTTGC 58.742 61.111 0.00 0.00 0.00 4.01
1337 1381 2.671177 CGGAGCTTGTGACCTTGCG 61.671 63.158 0.00 0.00 0.00 4.85
1360 1404 1.686052 TGCGGTGGAAATTTCTTGCTT 59.314 42.857 17.42 0.00 0.00 3.91
1367 1411 5.463392 GGTGGAAATTTCTTGCTTTCTTGTC 59.537 40.000 17.42 0.00 33.02 3.18
1381 1425 1.361668 CTTGTCGCTGGTTCGATGGG 61.362 60.000 0.00 0.00 40.84 4.00
1392 1436 1.406539 GTTCGATGGGCATGAGCATTT 59.593 47.619 0.00 0.00 44.61 2.32
1407 1451 1.401905 GCATTTCGGTGGAATGGAGAC 59.598 52.381 0.34 0.00 30.88 3.36
1483 1531 5.664457 TCTTGTGCTGTACTGGAATAGATG 58.336 41.667 1.65 0.00 0.00 2.90
1488 1539 4.054671 GCTGTACTGGAATAGATGTGCTC 58.945 47.826 1.65 0.00 0.00 4.26
1492 1543 6.108687 TGTACTGGAATAGATGTGCTCTTTG 58.891 40.000 0.00 0.00 35.28 2.77
1519 1570 5.900123 TGGGTAAAGGGAAAAGTTCATTCAA 59.100 36.000 0.00 0.00 0.00 2.69
1552 1603 1.400494 GCACAGTTCACCTTTCGTTGT 59.600 47.619 0.00 0.00 0.00 3.32
1585 1636 1.030457 GGCATGGAAGATGGCAAGAG 58.970 55.000 0.00 0.00 43.15 2.85
1595 1646 5.882557 GGAAGATGGCAAGAGTCTCAAATTA 59.117 40.000 1.94 0.00 0.00 1.40
1597 1648 4.880696 AGATGGCAAGAGTCTCAAATTAGC 59.119 41.667 1.94 0.00 0.00 3.09
1646 1697 7.805071 GTGAGAAAGTTCCAACATACAATTCTG 59.195 37.037 0.00 0.00 0.00 3.02
1654 1705 8.352942 GTTCCAACATACAATTCTGAAGAAACT 58.647 33.333 0.00 0.00 37.61 2.66
1678 1729 8.971073 ACTGACAAGAAATATCCCAAATTAAGG 58.029 33.333 0.00 0.00 0.00 2.69
1679 1730 9.189156 CTGACAAGAAATATCCCAAATTAAGGA 57.811 33.333 0.00 0.00 36.36 3.36
1680 1731 9.189156 TGACAAGAAATATCCCAAATTAAGGAG 57.811 33.333 3.06 0.00 35.08 3.69
1682 1733 9.190317 ACAAGAAATATCCCAAATTAAGGAGTC 57.810 33.333 3.06 0.00 35.08 3.36
1702 1753 2.094182 TCGGGTAGCTGAATTGTCTGAC 60.094 50.000 0.00 0.00 0.00 3.51
1773 1832 8.044908 TCTTATTGGATAGGGTAAAACAGTGAC 58.955 37.037 0.00 0.00 0.00 3.67
1779 1838 6.128007 GGATAGGGTAAAACAGTGACAATGTG 60.128 42.308 9.64 0.00 0.00 3.21
1802 1861 5.308497 TGGTCATGTAGTAGAAAGGAAACCA 59.692 40.000 0.00 0.00 0.00 3.67
1806 1865 8.092687 GTCATGTAGTAGAAAGGAAACCAGTTA 58.907 37.037 0.00 0.00 0.00 2.24
1846 1905 7.417797 GCCATATAAAGTGGTTGATGGACAAAT 60.418 37.037 2.92 0.00 40.36 2.32
1854 1913 4.776837 TGGTTGATGGACAAATTTGCCTAT 59.223 37.500 23.31 15.53 40.36 2.57
1860 1919 5.404466 TGGACAAATTTGCCTATCAAAGG 57.596 39.130 23.31 0.00 46.68 3.11
1871 1930 4.200092 GCCTATCAAAGGGAAGGTGTTAG 58.800 47.826 0.00 0.00 46.65 2.34
1918 2364 3.130340 AGCTGTTCAATTGTTCACCGTTT 59.870 39.130 5.13 0.00 0.00 3.60
1933 2379 1.735571 CCGTTTATCACCTTTCACCCG 59.264 52.381 0.00 0.00 0.00 5.28
1997 2443 7.066766 GTCAATCTGCAATACCTTTGATCTCTT 59.933 37.037 0.00 0.00 0.00 2.85
2128 2574 6.484977 GGGCTAAACAAATATCAGAGAGAAGG 59.515 42.308 0.00 0.00 0.00 3.46
2137 2583 9.844257 CAAATATCAGAGAGAAGGAAGGTTAAT 57.156 33.333 0.00 0.00 0.00 1.40
2150 2597 4.306600 GAAGGTTAATGCCCTGTTTGTTG 58.693 43.478 0.00 0.00 30.99 3.33
2205 2652 0.098376 GGCAAAGCTGAGCAGAATCG 59.902 55.000 7.39 0.00 0.00 3.34
2231 2678 1.071699 GCCACTGAAGTACACCTGGAA 59.928 52.381 0.00 0.00 0.00 3.53
2258 2705 5.467735 GCTTCAGGCAATTTCACTGAAAATT 59.532 36.000 8.28 1.86 46.81 1.82
2259 2706 6.017687 GCTTCAGGCAATTTCACTGAAAATTT 60.018 34.615 8.28 0.00 46.81 1.82
2279 2726 5.623956 TTTCCCGAATCCAGATTAAGCTA 57.376 39.130 0.00 0.00 0.00 3.32
2280 2727 5.623956 TTCCCGAATCCAGATTAAGCTAA 57.376 39.130 0.00 0.00 0.00 3.09
2334 2781 7.765695 TGTTTCAGCTTCTGATTTTTCCTAT 57.234 32.000 0.00 0.00 40.39 2.57
2336 2783 6.764308 TTCAGCTTCTGATTTTTCCTATGG 57.236 37.500 0.00 0.00 40.39 2.74
2425 2872 5.782047 TCCAAAACACATGAATAGGCAAAG 58.218 37.500 0.00 0.00 0.00 2.77
2459 2906 3.526211 CCATGGCATGGTGAATCCT 57.474 52.632 33.65 0.00 45.54 3.24
2460 2907 2.662535 CCATGGCATGGTGAATCCTA 57.337 50.000 33.65 0.00 45.54 2.94
2461 2908 2.233271 CCATGGCATGGTGAATCCTAC 58.767 52.381 33.65 0.00 45.54 3.18
2462 2909 2.423231 CCATGGCATGGTGAATCCTACA 60.423 50.000 33.65 0.00 45.54 2.74
2463 2910 2.715749 TGGCATGGTGAATCCTACAG 57.284 50.000 0.00 0.00 37.07 2.74
2464 2911 1.212688 TGGCATGGTGAATCCTACAGG 59.787 52.381 0.00 0.00 37.07 4.00
2477 2924 3.889815 TCCTACAGGAAGGAATTGCATG 58.110 45.455 0.00 0.00 42.83 4.06
2478 2925 2.360165 CCTACAGGAAGGAATTGCATGC 59.640 50.000 11.82 11.82 39.15 4.06
2479 2926 1.927487 ACAGGAAGGAATTGCATGCA 58.073 45.000 18.46 18.46 0.00 3.96
2480 2927 2.250031 ACAGGAAGGAATTGCATGCAA 58.750 42.857 33.57 33.57 40.47 4.08
2481 2928 2.633967 ACAGGAAGGAATTGCATGCAAA 59.366 40.909 34.84 19.40 39.55 3.68
2482 2929 3.262405 ACAGGAAGGAATTGCATGCAAAT 59.738 39.130 34.84 28.05 39.55 2.32
2483 2930 4.258543 CAGGAAGGAATTGCATGCAAATT 58.741 39.130 34.84 26.61 39.55 1.82
2484 2931 5.046448 ACAGGAAGGAATTGCATGCAAATTA 60.046 36.000 34.84 14.98 39.55 1.40
2485 2932 6.053005 CAGGAAGGAATTGCATGCAAATTAT 58.947 36.000 34.84 21.35 39.55 1.28
2486 2933 6.540914 CAGGAAGGAATTGCATGCAAATTATT 59.459 34.615 34.84 24.48 39.55 1.40
2487 2934 6.764560 AGGAAGGAATTGCATGCAAATTATTC 59.235 34.615 34.84 29.58 39.55 1.75
2488 2935 6.017687 GGAAGGAATTGCATGCAAATTATTCC 60.018 38.462 35.47 35.47 39.65 3.01
2489 2936 5.991861 AGGAATTGCATGCAAATTATTCCA 58.008 33.333 39.21 20.79 40.79 3.53
2490 2937 6.597562 AGGAATTGCATGCAAATTATTCCAT 58.402 32.000 39.21 29.14 40.79 3.41
2491 2938 6.485313 AGGAATTGCATGCAAATTATTCCATG 59.515 34.615 39.21 11.63 40.79 3.66
2492 2939 6.261381 GGAATTGCATGCAAATTATTCCATGT 59.739 34.615 36.41 19.03 39.38 3.21
2493 2940 7.201750 GGAATTGCATGCAAATTATTCCATGTT 60.202 33.333 36.41 24.31 39.38 2.71
2494 2941 8.734218 AATTGCATGCAAATTATTCCATGTTA 57.266 26.923 34.84 8.63 39.55 2.41
2495 2942 8.734218 ATTGCATGCAAATTATTCCATGTTAA 57.266 26.923 34.84 8.22 39.55 2.01
2496 2943 8.557592 TTGCATGCAAATTATTCCATGTTAAA 57.442 26.923 30.19 0.89 37.84 1.52
2497 2944 8.199176 TGCATGCAAATTATTCCATGTTAAAG 57.801 30.769 20.30 0.00 37.84 1.85
2554 3001 4.468868 AGGTGTAGGGTGTTCATAGGTTAC 59.531 45.833 0.00 0.00 0.00 2.50
2555 3002 4.223477 GGTGTAGGGTGTTCATAGGTTACA 59.777 45.833 0.00 0.00 0.00 2.41
2562 3009 5.048991 GGGTGTTCATAGGTTACACAACTTG 60.049 44.000 14.15 0.00 42.96 3.16
2597 3044 6.677781 TTCTTCTACTTTTTCCACACAGTG 57.322 37.500 0.00 0.00 0.00 3.66
2626 3073 7.384932 TGTTATCCTGACGATAATGCATTAGTG 59.615 37.037 22.76 18.76 43.66 2.74
2633 3080 8.437360 TGACGATAATGCATTAGTGAATTTCT 57.563 30.769 22.76 4.38 35.21 2.52
2739 3186 8.871862 CATATCTTGCAGAGCTCACTATATTTC 58.128 37.037 17.77 0.00 0.00 2.17
2768 3215 5.298347 CCCGATACCAAGAAGTTCCTTATC 58.702 45.833 0.00 0.81 0.00 1.75
2867 3314 5.337652 GGTCCACTTTACTCTCTTATGCACT 60.338 44.000 0.00 0.00 0.00 4.40
2923 3380 4.273318 ACTCTCAAATAATTGCCCCTGTC 58.727 43.478 0.00 0.00 36.45 3.51
3088 3545 6.825721 GGAATCAATCATCCAGATGGTATACC 59.174 42.308 15.50 15.50 39.24 2.73
3214 3671 1.267121 TTGAGGTAGACTGGGCTGAC 58.733 55.000 0.00 0.00 0.00 3.51
3235 3692 5.064834 TGACGTGCGTGGCATTAATTATTTA 59.935 36.000 0.67 0.00 41.91 1.40
3296 3753 8.394877 GTTTACAATGAATATCATGTTGACGGA 58.605 33.333 0.00 0.00 37.15 4.69
3360 3817 3.813443 AGACTGATACATCAATGGTGGC 58.187 45.455 0.00 0.00 36.18 5.01
3367 3824 1.001020 ATCAATGGTGGCCGAAGCA 60.001 52.632 0.00 0.00 42.56 3.91
3391 3848 9.387257 GCAAAAATAATGAAGAGATGGGAATTT 57.613 29.630 0.00 0.00 0.00 1.82
3397 3854 7.521871 AATGAAGAGATGGGAATTTGATAGC 57.478 36.000 0.00 0.00 0.00 2.97
3436 3893 7.331934 TCATCTTTAATCACTTCTTGGTTCTCG 59.668 37.037 0.00 0.00 28.69 4.04
3530 3987 7.872993 TGAACTTCTGAGATTTGTTATTCTCGT 59.127 33.333 0.00 0.00 41.04 4.18
3619 4076 6.969043 TGACTTAACACCTGAATTATGGGAT 58.031 36.000 1.91 0.00 0.00 3.85
3651 4108 4.571984 TGTAAAGAGCGATGGTGATGATTG 59.428 41.667 0.00 0.00 0.00 2.67
3655 4112 0.664761 GCGATGGTGATGATTGTGGG 59.335 55.000 0.00 0.00 0.00 4.61
3703 4160 1.134401 ACAAGCTCATCATACACCCCG 60.134 52.381 0.00 0.00 0.00 5.73
3769 4226 4.406649 TCTGATGCTGGAAGTGATATGTCA 59.593 41.667 0.00 0.00 35.30 3.58
3796 4253 5.940470 GGAACCATACTCAGAATTTGTGACT 59.060 40.000 0.00 0.00 0.00 3.41
3876 4333 1.910722 CACTGGTGGAGCCTAGCAT 59.089 57.895 0.00 0.00 38.35 3.79
3971 4428 3.929610 GTCTGATGTGAGGCTCTTAACAC 59.070 47.826 16.72 6.19 0.00 3.32
4070 4529 0.174617 GTGTCCTCTAGCCAGAGCAC 59.825 60.000 3.30 0.00 46.08 4.40
4132 4591 9.832445 GGATTTTATGACCTCTACAAGAATGTA 57.168 33.333 0.00 0.00 41.05 2.29
4222 4681 9.336171 GAAATGATCTCAAGGCTTAAGTATCTT 57.664 33.333 0.00 3.55 0.00 2.40
4224 4683 6.586344 TGATCTCAAGGCTTAAGTATCTTGG 58.414 40.000 22.65 17.10 37.69 3.61
4227 4686 6.407202 TCTCAAGGCTTAAGTATCTTGGAAC 58.593 40.000 22.65 0.29 37.69 3.62
4252 4711 6.073440 CCATGCTTTTTCTGAACAATTTCCAG 60.073 38.462 0.00 0.00 0.00 3.86
4267 4726 1.838112 TCCAGCAGGCTTTTACATGG 58.162 50.000 0.00 0.00 33.74 3.66
4445 4906 2.995466 AACATCATTCAGTGCGGTTG 57.005 45.000 0.00 0.00 0.00 3.77
4698 5221 5.008118 AGCAAGTTTTGTAGCAGACTTCTTC 59.992 40.000 0.00 0.00 30.41 2.87
4708 5231 7.492524 TGTAGCAGACTTCTTCGATGATATTT 58.507 34.615 1.37 0.00 0.00 1.40
4791 5332 1.756375 GAGCACCTGCGCTTACATCG 61.756 60.000 9.73 0.00 44.01 3.84
4864 5405 5.581874 ACATAAATTTGTTTGCATGCCTAGC 59.418 36.000 16.68 6.02 0.00 3.42
4930 5473 0.034896 AGATTTTCCGTGCAGTCCGT 59.965 50.000 0.00 0.00 0.00 4.69
5000 5544 2.683362 CGGCTCAGGTAATTTTCCCTTC 59.317 50.000 0.00 0.00 0.00 3.46
5146 5709 9.662545 GGACAATGGAAATTTTAAAATTGTGTG 57.337 29.630 23.34 18.28 38.12 3.82
5151 5714 8.567285 TGGAAATTTTAAAATTGTGTGGTGTT 57.433 26.923 23.34 7.50 38.53 3.32
5381 5955 4.811555 TCAATGGTGTTTCTGAACTTCG 57.188 40.909 0.00 0.00 36.70 3.79
5417 5991 7.746703 ACCCCCTCTGTATCAAAATATTAGAC 58.253 38.462 0.00 0.00 0.00 2.59
5464 6038 6.299141 TCTTGTATTTTGATATGGAGGGAGC 58.701 40.000 0.00 0.00 0.00 4.70
5479 6066 2.306847 GGGAGCACCTCTCTAGAGAAG 58.693 57.143 22.54 18.96 44.74 2.85
5497 6084 1.231963 AGGAACAACCCTGGGAACTT 58.768 50.000 22.23 6.49 40.05 2.66
5500 6087 2.384828 GAACAACCCTGGGAACTTGTT 58.615 47.619 24.81 24.81 39.08 2.83
5501 6088 2.067365 ACAACCCTGGGAACTTGTTC 57.933 50.000 22.23 5.03 0.00 3.18
5502 6089 1.569072 ACAACCCTGGGAACTTGTTCT 59.431 47.619 22.23 0.00 0.00 3.01
5503 6090 2.781174 ACAACCCTGGGAACTTGTTCTA 59.219 45.455 22.23 3.08 0.00 2.10
5504 6091 3.203487 ACAACCCTGGGAACTTGTTCTAA 59.797 43.478 22.23 2.09 0.00 2.10
5505 6092 4.211920 CAACCCTGGGAACTTGTTCTAAA 58.788 43.478 22.23 0.00 0.00 1.85
5506 6093 4.529716 ACCCTGGGAACTTGTTCTAAAA 57.470 40.909 22.23 0.00 0.00 1.52
5507 6094 4.874199 ACCCTGGGAACTTGTTCTAAAAA 58.126 39.130 22.23 0.00 0.00 1.94
5533 6120 8.463930 AAAAACCTGAGAACTGACATTATTCA 57.536 30.769 0.00 0.00 0.00 2.57
5534 6121 8.463930 AAAACCTGAGAACTGACATTATTCAA 57.536 30.769 0.00 0.00 0.00 2.69
5535 6122 8.641498 AAACCTGAGAACTGACATTATTCAAT 57.359 30.769 0.00 0.00 0.00 2.57
5536 6123 8.641498 AACCTGAGAACTGACATTATTCAATT 57.359 30.769 0.00 0.00 0.00 2.32
5537 6124 8.641498 ACCTGAGAACTGACATTATTCAATTT 57.359 30.769 0.00 0.00 0.00 1.82
5538 6125 9.082313 ACCTGAGAACTGACATTATTCAATTTT 57.918 29.630 0.00 0.00 0.00 1.82
5539 6126 9.918630 CCTGAGAACTGACATTATTCAATTTTT 57.081 29.630 0.00 0.00 0.00 1.94
5579 6268 7.461182 TTCATTTTGTTGTTATACTCCTGGG 57.539 36.000 0.00 0.00 0.00 4.45
5629 6318 4.589374 ACAGCCAATCTACCATAGACCTAC 59.411 45.833 0.00 0.00 37.69 3.18
5660 6677 5.701224 TGTTTTCTAATGAGTGTTTCCCCT 58.299 37.500 0.00 0.00 0.00 4.79
5685 6703 3.306472 ACAAAGGGCCAAACTGTCTTA 57.694 42.857 6.18 0.00 0.00 2.10
5690 6708 4.489306 AGGGCCAAACTGTCTTATACTC 57.511 45.455 6.18 0.00 0.00 2.59
5691 6709 3.118738 AGGGCCAAACTGTCTTATACTCG 60.119 47.826 6.18 0.00 0.00 4.18
5698 6716 9.557338 GCCAAACTGTCTTATACTCGTATATAG 57.443 37.037 0.00 0.82 0.00 1.31
5718 6736 4.100707 AGTTACGTCGTAGCTATGCAAA 57.899 40.909 18.73 0.00 28.25 3.68
5744 6762 9.511144 ACAAGTTAACTGTTTTAACTGTATTGC 57.489 29.630 9.34 0.00 42.48 3.56
5811 6846 8.709386 ATAGTGTAGTTGCTCTATTTTCACTG 57.291 34.615 14.34 0.00 34.96 3.66
5814 6849 7.599245 AGTGTAGTTGCTCTATTTTCACTGTAC 59.401 37.037 0.00 0.00 33.76 2.90
5860 6903 6.434596 TGTGTTCTTGTTTATTTGACATCCG 58.565 36.000 0.00 0.00 0.00 4.18
5866 6921 7.821652 TCTTGTTTATTTGACATCCGCATTTA 58.178 30.769 0.00 0.00 0.00 1.40
5906 6961 7.931275 ACTGAATTTGGAACTACTTTCTGAAC 58.069 34.615 0.00 0.00 34.26 3.18
5984 7039 4.369182 GAGTTACCGGATTGACATACCAG 58.631 47.826 9.46 0.00 0.00 4.00
6005 7060 7.731054 ACCAGGTAATTAGCTAATTCAGAGAG 58.269 38.462 30.17 19.10 37.16 3.20
6032 7087 7.929785 ACTTTAAAAGGTTGAGACGAGATAACA 59.070 33.333 0.00 0.00 0.00 2.41
6033 7088 7.884816 TTAAAAGGTTGAGACGAGATAACAG 57.115 36.000 0.00 0.00 0.00 3.16
6034 7089 5.470047 AAAGGTTGAGACGAGATAACAGT 57.530 39.130 0.00 0.00 0.00 3.55
6035 7090 4.442375 AGGTTGAGACGAGATAACAGTG 57.558 45.455 0.00 0.00 0.00 3.66
6036 7091 3.193691 AGGTTGAGACGAGATAACAGTGG 59.806 47.826 0.00 0.00 0.00 4.00
6037 7092 3.192844 GGTTGAGACGAGATAACAGTGGA 59.807 47.826 0.00 0.00 0.00 4.02
6038 7093 4.167268 GTTGAGACGAGATAACAGTGGAC 58.833 47.826 0.00 0.00 0.00 4.02
6039 7094 2.753452 TGAGACGAGATAACAGTGGACC 59.247 50.000 0.00 0.00 0.00 4.46
6040 7095 3.018149 GAGACGAGATAACAGTGGACCT 58.982 50.000 0.00 0.00 0.00 3.85
6041 7096 3.018149 AGACGAGATAACAGTGGACCTC 58.982 50.000 0.00 0.00 0.00 3.85
6042 7097 2.099427 GACGAGATAACAGTGGACCTCC 59.901 54.545 0.00 0.00 0.00 4.30
6043 7098 2.100197 CGAGATAACAGTGGACCTCCA 58.900 52.381 0.00 0.00 45.30 3.86
6059 7114 2.878429 CACTCGAGTGGACCTCCG 59.122 66.667 33.36 9.17 42.10 4.63
6090 7145 3.868757 TGTGTACAGGTCTCATACAGC 57.131 47.619 0.00 0.00 29.67 4.40
6091 7146 3.161866 TGTGTACAGGTCTCATACAGCA 58.838 45.455 0.00 0.00 29.67 4.41
6092 7147 3.576550 TGTGTACAGGTCTCATACAGCAA 59.423 43.478 0.00 0.00 29.67 3.91
6093 7148 3.927142 GTGTACAGGTCTCATACAGCAAC 59.073 47.826 0.00 0.00 29.67 4.17
6094 7149 2.370281 ACAGGTCTCATACAGCAACG 57.630 50.000 0.00 0.00 0.00 4.10
6095 7150 1.618837 ACAGGTCTCATACAGCAACGT 59.381 47.619 0.00 0.00 0.00 3.99
6141 7202 0.759346 AATCGGTGTATCCCCTCTGC 59.241 55.000 0.00 0.00 0.00 4.26
6148 7209 1.764723 TGTATCCCCTCTGCACAGATG 59.235 52.381 0.00 0.00 36.76 2.90
6199 7260 8.671384 AGCAAAAGTAGTACAACTGTAAATGA 57.329 30.769 2.52 0.00 31.52 2.57
6227 7288 7.789273 TTAGTCGGAATCTGTTGTTTGTTTA 57.211 32.000 0.00 0.00 0.00 2.01
6236 7297 8.816640 AATCTGTTGTTTGTTTATCCATTGTC 57.183 30.769 0.00 0.00 0.00 3.18
6291 7357 4.822026 ACAGTAGAGTAGGTTTGTGCATC 58.178 43.478 0.00 0.00 0.00 3.91
6336 7402 9.355215 AGAATTTTGTAAGTATACGAGTGAGTG 57.645 33.333 0.00 0.00 34.60 3.51
6357 7423 5.048504 AGTGCATTACCTTTGTTCAGTGATG 60.049 40.000 0.00 0.00 32.36 3.07
6360 7426 5.278957 GCATTACCTTTGTTCAGTGATGGTT 60.279 40.000 0.00 0.00 30.51 3.67
6366 7432 6.777580 ACCTTTGTTCAGTGATGGTTCTATTT 59.222 34.615 0.00 0.00 0.00 1.40
6371 7437 7.816640 TGTTCAGTGATGGTTCTATTTAAAGC 58.183 34.615 0.00 0.00 0.00 3.51
6378 7444 6.951198 TGATGGTTCTATTTAAAGCTTTCCCA 59.049 34.615 16.57 9.95 0.00 4.37
6393 7459 0.339859 TCCCATCTCAGGTGCCTAGT 59.660 55.000 0.00 0.00 0.00 2.57
6394 7460 1.207791 CCCATCTCAGGTGCCTAGTT 58.792 55.000 0.00 0.00 0.00 2.24
6395 7461 1.139853 CCCATCTCAGGTGCCTAGTTC 59.860 57.143 0.00 0.00 0.00 3.01
6396 7462 2.114616 CCATCTCAGGTGCCTAGTTCT 58.885 52.381 0.00 0.00 0.00 3.01
6399 7465 2.889512 TCTCAGGTGCCTAGTTCTTGA 58.110 47.619 0.00 0.00 0.00 3.02
6400 7466 3.239449 TCTCAGGTGCCTAGTTCTTGAA 58.761 45.455 0.00 0.00 0.00 2.69
6401 7467 3.006967 TCTCAGGTGCCTAGTTCTTGAAC 59.993 47.826 5.44 5.44 0.00 3.18
6402 7468 2.972713 TCAGGTGCCTAGTTCTTGAACT 59.027 45.455 18.32 18.32 36.82 3.01
6403 7469 3.391296 TCAGGTGCCTAGTTCTTGAACTT 59.609 43.478 19.28 6.14 34.37 2.66
6406 7472 5.763204 CAGGTGCCTAGTTCTTGAACTTTTA 59.237 40.000 19.28 3.34 34.37 1.52
6407 7473 5.763698 AGGTGCCTAGTTCTTGAACTTTTAC 59.236 40.000 19.28 13.33 34.37 2.01
6408 7474 5.763698 GGTGCCTAGTTCTTGAACTTTTACT 59.236 40.000 19.28 0.00 34.37 2.24
6410 7476 7.095313 GGTGCCTAGTTCTTGAACTTTTACTAC 60.095 40.741 19.28 11.72 34.37 2.73
6411 7477 7.656542 GTGCCTAGTTCTTGAACTTTTACTACT 59.343 37.037 19.28 0.00 34.37 2.57
6412 7478 8.863086 TGCCTAGTTCTTGAACTTTTACTACTA 58.137 33.333 19.28 0.14 34.37 1.82
6417 7483 9.761504 AGTTCTTGAACTTTTACTACTACTTCC 57.238 33.333 9.93 0.00 0.00 3.46
6418 7484 8.697960 GTTCTTGAACTTTTACTACTACTTCCG 58.302 37.037 6.28 0.00 0.00 4.30
6420 7486 8.078596 TCTTGAACTTTTACTACTACTTCCGTC 58.921 37.037 0.00 0.00 0.00 4.79
6421 7487 6.681777 TGAACTTTTACTACTACTTCCGTCC 58.318 40.000 0.00 0.00 0.00 4.79
6422 7488 5.651387 ACTTTTACTACTACTTCCGTCCC 57.349 43.478 0.00 0.00 0.00 4.46
6423 7489 5.079643 ACTTTTACTACTACTTCCGTCCCA 58.920 41.667 0.00 0.00 0.00 4.37
6427 7493 3.438183 ACTACTACTTCCGTCCCACAAT 58.562 45.455 0.00 0.00 0.00 2.71
6429 7495 5.206587 ACTACTACTTCCGTCCCACAATAT 58.793 41.667 0.00 0.00 0.00 1.28
6434 7500 7.571025 ACTACTTCCGTCCCACAATATAAAAT 58.429 34.615 0.00 0.00 0.00 1.82
6435 7501 8.050930 ACTACTTCCGTCCCACAATATAAAATT 58.949 33.333 0.00 0.00 0.00 1.82
6436 7502 7.095695 ACTTCCGTCCCACAATATAAAATTG 57.904 36.000 0.00 0.00 35.29 2.32
6437 7503 6.661805 ACTTCCGTCCCACAATATAAAATTGT 59.338 34.615 0.00 0.00 42.38 2.71
6438 7504 7.177744 ACTTCCGTCCCACAATATAAAATTGTT 59.822 33.333 0.74 0.00 39.94 2.83
6440 7506 7.897864 TCCGTCCCACAATATAAAATTGTTTT 58.102 30.769 0.74 0.00 39.94 2.43
6442 7508 7.412455 CCGTCCCACAATATAAAATTGTTTTGC 60.412 37.037 0.74 0.00 39.94 3.68
6444 7510 8.778358 GTCCCACAATATAAAATTGTTTTGCAA 58.222 29.630 0.00 0.00 39.94 4.08
6445 7511 8.997323 TCCCACAATATAAAATTGTTTTGCAAG 58.003 29.630 0.00 0.00 39.94 4.01
6446 7512 7.750014 CCCACAATATAAAATTGTTTTGCAAGC 59.250 33.333 0.00 0.00 39.94 4.01
6454 7520 5.827568 AATTGTTTTGCAAGCTAACATCG 57.172 34.783 14.24 0.00 40.86 3.84
6455 7521 3.281341 TGTTTTGCAAGCTAACATCGG 57.719 42.857 10.41 0.00 0.00 4.18
6461 8093 3.013219 TGCAAGCTAACATCGGCATTAA 58.987 40.909 0.00 0.00 0.00 1.40
6493 8125 1.807142 CTTTTGTTCCTCTTCCGGCTC 59.193 52.381 0.00 0.00 0.00 4.70
6494 8126 1.056660 TTTGTTCCTCTTCCGGCTCT 58.943 50.000 0.00 0.00 0.00 4.09
6534 8166 2.787994 CAGAGCAGGATGTTTCCAACT 58.212 47.619 0.00 0.00 45.30 3.16
6611 8243 5.896073 TCCCATCTATTCTTTCTTCTCCC 57.104 43.478 0.00 0.00 0.00 4.30
6619 8251 3.594603 TCTTTCTTCTCCCGTGTCATC 57.405 47.619 0.00 0.00 0.00 2.92
6685 8317 4.794439 TCACGATCACAGGCGGCG 62.794 66.667 0.51 0.51 0.00 6.46
6720 8352 2.225242 TGCATGTGGGGTTGGTAGATTT 60.225 45.455 0.00 0.00 0.00 2.17
6721 8353 2.831526 GCATGTGGGGTTGGTAGATTTT 59.168 45.455 0.00 0.00 0.00 1.82
6726 8358 5.505780 TGTGGGGTTGGTAGATTTTAGATG 58.494 41.667 0.00 0.00 0.00 2.90
6733 8369 4.693283 TGGTAGATTTTAGATGCACGGAG 58.307 43.478 0.00 0.00 0.00 4.63
6788 8425 1.072505 GGTTCCCGGTGAGAGCAAA 59.927 57.895 0.00 0.00 0.00 3.68
6800 8437 0.035317 AGAGCAAACAGACATCGCCA 59.965 50.000 0.00 0.00 0.00 5.69
6893 8542 2.000429 AATCTTGCGCTGCCAATTTC 58.000 45.000 9.73 0.00 0.00 2.17
6894 8543 0.889994 ATCTTGCGCTGCCAATTTCA 59.110 45.000 9.73 0.00 0.00 2.69
6895 8544 0.672889 TCTTGCGCTGCCAATTTCAA 59.327 45.000 9.73 0.00 0.00 2.69
6896 8545 1.273048 TCTTGCGCTGCCAATTTCAAT 59.727 42.857 9.73 0.00 0.00 2.57
6897 8546 1.657094 CTTGCGCTGCCAATTTCAATC 59.343 47.619 9.73 0.00 0.00 2.67
6898 8547 0.456482 TGCGCTGCCAATTTCAATCG 60.456 50.000 9.73 0.00 0.00 3.34
6903 8552 1.247419 TGCCAATTTCAATCGCCGGT 61.247 50.000 1.90 0.00 0.00 5.28
6915 8564 1.881252 CGCCGGTGCAGGTATGTAC 60.881 63.158 0.00 0.00 40.93 2.90
6919 8576 1.134753 CCGGTGCAGGTATGTACGTAA 59.865 52.381 0.00 0.00 42.42 3.18
6936 8593 2.987149 CGTAAACACGAGTCAGCAGATT 59.013 45.455 0.00 0.00 34.64 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 5.390387 AGTTGCCTCTAACCCATGTAAAAA 58.610 37.500 0.00 0.00 0.00 1.94
10 11 4.993028 AGTTGCCTCTAACCCATGTAAAA 58.007 39.130 0.00 0.00 0.00 1.52
11 12 4.650972 AGTTGCCTCTAACCCATGTAAA 57.349 40.909 0.00 0.00 0.00 2.01
12 13 5.249852 AGTTAGTTGCCTCTAACCCATGTAA 59.750 40.000 18.23 0.00 46.16 2.41
13 14 4.781087 AGTTAGTTGCCTCTAACCCATGTA 59.219 41.667 18.23 0.00 46.16 2.29
14 15 3.587506 AGTTAGTTGCCTCTAACCCATGT 59.412 43.478 18.23 3.97 46.16 3.21
15 16 3.941483 CAGTTAGTTGCCTCTAACCCATG 59.059 47.826 18.23 10.65 46.16 3.66
16 17 3.844211 TCAGTTAGTTGCCTCTAACCCAT 59.156 43.478 18.23 4.50 46.16 4.00
17 18 3.244582 TCAGTTAGTTGCCTCTAACCCA 58.755 45.455 18.23 7.87 46.16 4.51
18 19 3.975168 TCAGTTAGTTGCCTCTAACCC 57.025 47.619 18.23 2.68 46.16 4.11
19 20 5.306394 AGTTTCAGTTAGTTGCCTCTAACC 58.694 41.667 18.23 8.07 46.16 2.85
20 21 6.091034 GCTAGTTTCAGTTAGTTGCCTCTAAC 59.909 42.308 15.69 15.69 45.68 2.34
21 22 6.164176 GCTAGTTTCAGTTAGTTGCCTCTAA 58.836 40.000 0.00 0.00 0.00 2.10
22 23 5.337330 GGCTAGTTTCAGTTAGTTGCCTCTA 60.337 44.000 0.00 0.00 35.05 2.43
23 24 4.563786 GGCTAGTTTCAGTTAGTTGCCTCT 60.564 45.833 0.00 0.00 35.05 3.69
24 25 3.685272 GGCTAGTTTCAGTTAGTTGCCTC 59.315 47.826 0.00 0.00 35.05 4.70
25 26 3.559384 GGGCTAGTTTCAGTTAGTTGCCT 60.559 47.826 0.00 0.00 37.13 4.75
26 27 2.747989 GGGCTAGTTTCAGTTAGTTGCC 59.252 50.000 0.00 0.00 36.50 4.52
27 28 3.408634 TGGGCTAGTTTCAGTTAGTTGC 58.591 45.455 0.00 0.00 0.00 4.17
28 29 4.215613 GGTTGGGCTAGTTTCAGTTAGTTG 59.784 45.833 0.00 0.00 0.00 3.16
29 30 4.104261 AGGTTGGGCTAGTTTCAGTTAGTT 59.896 41.667 0.00 0.00 0.00 2.24
30 31 3.651423 AGGTTGGGCTAGTTTCAGTTAGT 59.349 43.478 0.00 0.00 0.00 2.24
31 32 4.003648 CAGGTTGGGCTAGTTTCAGTTAG 58.996 47.826 0.00 0.00 0.00 2.34
32 33 3.244770 CCAGGTTGGGCTAGTTTCAGTTA 60.245 47.826 0.00 0.00 32.67 2.24
33 34 2.489073 CCAGGTTGGGCTAGTTTCAGTT 60.489 50.000 0.00 0.00 32.67 3.16
34 35 1.073923 CCAGGTTGGGCTAGTTTCAGT 59.926 52.381 0.00 0.00 32.67 3.41
35 36 1.073923 ACCAGGTTGGGCTAGTTTCAG 59.926 52.381 0.00 0.00 43.37 3.02
36 37 1.145571 ACCAGGTTGGGCTAGTTTCA 58.854 50.000 0.00 0.00 43.37 2.69
37 38 2.160205 GAACCAGGTTGGGCTAGTTTC 58.840 52.381 10.47 0.00 43.37 2.78
38 39 1.780919 AGAACCAGGTTGGGCTAGTTT 59.219 47.619 10.47 0.00 43.37 2.66
39 40 1.446016 AGAACCAGGTTGGGCTAGTT 58.554 50.000 10.47 0.00 43.37 2.24
40 41 1.446016 AAGAACCAGGTTGGGCTAGT 58.554 50.000 10.47 0.00 43.37 2.57
41 42 2.586648 AAAGAACCAGGTTGGGCTAG 57.413 50.000 10.47 0.00 43.37 3.42
42 43 2.962421 CAAAAAGAACCAGGTTGGGCTA 59.038 45.455 10.47 0.00 43.37 3.93
43 44 1.762370 CAAAAAGAACCAGGTTGGGCT 59.238 47.619 10.47 0.00 43.37 5.19
44 45 1.760029 TCAAAAAGAACCAGGTTGGGC 59.240 47.619 10.47 0.00 43.37 5.36
45 46 2.224042 GCTCAAAAAGAACCAGGTTGGG 60.224 50.000 10.47 0.00 43.37 4.12
46 47 2.695147 AGCTCAAAAAGAACCAGGTTGG 59.305 45.455 10.47 0.00 45.02 3.77
47 48 5.712152 ATAGCTCAAAAAGAACCAGGTTG 57.288 39.130 10.47 0.00 0.00 3.77
48 49 6.323739 TCAAATAGCTCAAAAAGAACCAGGTT 59.676 34.615 3.79 3.79 0.00 3.50
49 50 5.833131 TCAAATAGCTCAAAAAGAACCAGGT 59.167 36.000 0.00 0.00 0.00 4.00
50 51 6.015940 ACTCAAATAGCTCAAAAAGAACCAGG 60.016 38.462 0.00 0.00 0.00 4.45
51 52 6.974965 ACTCAAATAGCTCAAAAAGAACCAG 58.025 36.000 0.00 0.00 0.00 4.00
52 53 6.959639 ACTCAAATAGCTCAAAAAGAACCA 57.040 33.333 0.00 0.00 0.00 3.67
53 54 7.425606 TGAACTCAAATAGCTCAAAAAGAACC 58.574 34.615 0.00 0.00 27.22 3.62
54 55 8.856490 TTGAACTCAAATAGCTCAAAAAGAAC 57.144 30.769 0.00 0.00 37.36 3.01
83 84 9.975218 ATCATAGGGTTAGTGTTAGTTTGAATT 57.025 29.630 0.00 0.00 0.00 2.17
84 85 9.614792 GATCATAGGGTTAGTGTTAGTTTGAAT 57.385 33.333 0.00 0.00 0.00 2.57
85 86 8.044908 GGATCATAGGGTTAGTGTTAGTTTGAA 58.955 37.037 0.00 0.00 0.00 2.69
86 87 7.181305 TGGATCATAGGGTTAGTGTTAGTTTGA 59.819 37.037 0.00 0.00 0.00 2.69
87 88 7.335627 TGGATCATAGGGTTAGTGTTAGTTTG 58.664 38.462 0.00 0.00 0.00 2.93
88 89 7.504926 TGGATCATAGGGTTAGTGTTAGTTT 57.495 36.000 0.00 0.00 0.00 2.66
89 90 7.504926 TTGGATCATAGGGTTAGTGTTAGTT 57.495 36.000 0.00 0.00 0.00 2.24
90 91 7.037873 TGTTTGGATCATAGGGTTAGTGTTAGT 60.038 37.037 0.00 0.00 0.00 2.24
91 92 7.335627 TGTTTGGATCATAGGGTTAGTGTTAG 58.664 38.462 0.00 0.00 0.00 2.34
92 93 7.260387 TGTTTGGATCATAGGGTTAGTGTTA 57.740 36.000 0.00 0.00 0.00 2.41
93 94 6.134535 TGTTTGGATCATAGGGTTAGTGTT 57.865 37.500 0.00 0.00 0.00 3.32
94 95 5.339200 CCTGTTTGGATCATAGGGTTAGTGT 60.339 44.000 0.00 0.00 38.35 3.55
95 96 5.126067 CCTGTTTGGATCATAGGGTTAGTG 58.874 45.833 0.00 0.00 38.35 2.74
96 97 4.166144 CCCTGTTTGGATCATAGGGTTAGT 59.834 45.833 5.46 0.00 42.52 2.24
97 98 4.718961 CCCTGTTTGGATCATAGGGTTAG 58.281 47.826 5.46 0.00 42.52 2.34
98 99 4.788925 CCCTGTTTGGATCATAGGGTTA 57.211 45.455 5.46 0.00 42.52 2.85
99 100 3.669939 CCCTGTTTGGATCATAGGGTT 57.330 47.619 5.46 0.00 42.52 4.11
102 103 1.215173 TGGCCCTGTTTGGATCATAGG 59.785 52.381 0.00 0.00 38.35 2.57
103 104 2.734755 TGGCCCTGTTTGGATCATAG 57.265 50.000 0.00 0.00 38.35 2.23
104 105 3.053019 TCAATGGCCCTGTTTGGATCATA 60.053 43.478 0.00 0.00 38.35 2.15
105 106 2.112998 CAATGGCCCTGTTTGGATCAT 58.887 47.619 0.00 0.00 38.35 2.45
106 107 1.076841 TCAATGGCCCTGTTTGGATCA 59.923 47.619 0.00 0.00 38.35 2.92
107 108 1.478105 GTCAATGGCCCTGTTTGGATC 59.522 52.381 0.00 0.00 38.35 3.36
108 109 1.077663 AGTCAATGGCCCTGTTTGGAT 59.922 47.619 0.00 0.00 38.35 3.41
109 110 0.482446 AGTCAATGGCCCTGTTTGGA 59.518 50.000 0.00 0.00 38.35 3.53
110 111 0.604578 CAGTCAATGGCCCTGTTTGG 59.395 55.000 0.00 0.00 0.00 3.28
111 112 0.037975 GCAGTCAATGGCCCTGTTTG 60.038 55.000 0.00 0.00 0.00 2.93
112 113 1.526575 CGCAGTCAATGGCCCTGTTT 61.527 55.000 0.00 0.00 0.00 2.83
113 114 1.973281 CGCAGTCAATGGCCCTGTT 60.973 57.895 0.00 0.00 0.00 3.16
114 115 2.360350 CGCAGTCAATGGCCCTGT 60.360 61.111 0.00 0.00 0.00 4.00
115 116 2.360350 ACGCAGTCAATGGCCCTG 60.360 61.111 0.00 0.00 29.74 4.45
179 180 1.089112 GGGCGCCGTGTAATTTAAGT 58.911 50.000 22.54 0.00 0.00 2.24
227 228 2.202932 GCGATGCGAGTGGGATGT 60.203 61.111 0.00 0.00 0.00 3.06
262 263 3.599704 GGGATTGCGGATGCTGGC 61.600 66.667 0.00 0.00 43.34 4.85
274 275 4.778143 GACAGGCGCACCGGGATT 62.778 66.667 10.83 0.00 42.76 3.01
290 291 2.768769 TGGTGGTGGGTGTTCGGA 60.769 61.111 0.00 0.00 0.00 4.55
315 316 2.671963 GGACGGGGAGTTTGGTGC 60.672 66.667 0.00 0.00 0.00 5.01
318 319 0.676782 GATGTGGACGGGGAGTTTGG 60.677 60.000 0.00 0.00 0.00 3.28
320 321 1.131303 TGGATGTGGACGGGGAGTTT 61.131 55.000 0.00 0.00 0.00 2.66
414 421 1.602237 GAAGGTTCCGATGAGGCCA 59.398 57.895 5.01 0.00 40.77 5.36
540 553 4.789075 CGACACGTGGGGCCTACG 62.789 72.222 36.35 36.35 46.31 3.51
541 554 4.446413 CCGACACGTGGGGCCTAC 62.446 72.222 21.57 10.45 0.00 3.18
669 687 3.750130 TCGGAAGATATCTACGTAGCCAC 59.250 47.826 18.00 8.84 33.31 5.01
712 732 3.119096 GGGCGAAACCGACTCTGC 61.119 66.667 0.00 0.00 40.62 4.26
940 975 0.682209 TCTAAAGACGCCGCCTACCT 60.682 55.000 0.00 0.00 0.00 3.08
1246 1289 0.037590 ACCCGATTTGCAAGCTGGTA 59.962 50.000 13.30 0.00 32.43 3.25
1272 1315 4.335594 CCAATCCCATAGAAACGAAAGACC 59.664 45.833 0.00 0.00 0.00 3.85
1280 1323 8.695456 ACAATAAACATCCAATCCCATAGAAAC 58.305 33.333 0.00 0.00 0.00 2.78
1283 1326 6.777091 CCACAATAAACATCCAATCCCATAGA 59.223 38.462 0.00 0.00 0.00 1.98
1284 1327 6.015180 CCCACAATAAACATCCAATCCCATAG 60.015 42.308 0.00 0.00 0.00 2.23
1285 1328 5.837979 CCCACAATAAACATCCAATCCCATA 59.162 40.000 0.00 0.00 0.00 2.74
1287 1330 4.029520 CCCACAATAAACATCCAATCCCA 58.970 43.478 0.00 0.00 0.00 4.37
1306 1349 4.161295 CTCCGCGAGCATTCCCCA 62.161 66.667 8.23 0.00 0.00 4.96
1332 1376 2.476534 ATTTCCACCGCAAGCGCAAG 62.477 55.000 11.47 1.56 38.40 4.01
1333 1377 2.081425 AATTTCCACCGCAAGCGCAA 62.081 50.000 11.47 0.00 38.40 4.85
1334 1378 2.081425 AAATTTCCACCGCAAGCGCA 62.081 50.000 11.47 0.00 38.40 6.09
1335 1379 1.344226 GAAATTTCCACCGCAAGCGC 61.344 55.000 9.26 0.00 38.24 5.92
1336 1380 0.240945 AGAAATTTCCACCGCAAGCG 59.759 50.000 14.61 7.60 39.44 4.68
1337 1381 2.061028 CAAGAAATTTCCACCGCAAGC 58.939 47.619 14.61 0.00 0.00 4.01
1360 1404 1.428448 CATCGAACCAGCGACAAGAA 58.572 50.000 0.00 0.00 43.79 2.52
1367 1411 2.514592 ATGCCCATCGAACCAGCG 60.515 61.111 0.00 0.00 0.00 5.18
1381 1425 0.810648 TTCCACCGAAATGCTCATGC 59.189 50.000 0.00 0.00 40.20 4.06
1392 1436 1.866015 ATCAGTCTCCATTCCACCGA 58.134 50.000 0.00 0.00 0.00 4.69
1407 1451 6.010294 ACAGATGAAGTTTGCTCAAATCAG 57.990 37.500 0.00 0.00 32.36 2.90
1483 1531 2.293399 CCTTTACCCACACAAAGAGCAC 59.707 50.000 0.00 0.00 34.35 4.40
1488 1539 4.404394 ACTTTTCCCTTTACCCACACAAAG 59.596 41.667 0.00 0.00 0.00 2.77
1492 1543 3.955551 TGAACTTTTCCCTTTACCCACAC 59.044 43.478 0.00 0.00 0.00 3.82
1519 1570 3.326588 TGAACTGTGCCCACTACTGTAAT 59.673 43.478 0.00 0.00 31.26 1.89
1525 1576 0.396811 AGGTGAACTGTGCCCACTAC 59.603 55.000 0.00 0.00 0.00 2.73
1552 1603 1.134521 CCATGCCGCTAGGAACTGTTA 60.135 52.381 0.00 0.00 41.52 2.41
1585 1636 7.062255 GCCAAACAAATACTGCTAATTTGAGAC 59.938 37.037 19.15 6.38 43.79 3.36
1595 1646 1.273327 GCAGGCCAAACAAATACTGCT 59.727 47.619 5.01 0.00 45.63 4.24
1597 1648 1.402720 CCGCAGGCCAAACAAATACTG 60.403 52.381 5.01 0.00 46.14 2.74
1646 1697 7.687941 TGGGATATTTCTTGTCAGTTTCTTC 57.312 36.000 0.00 0.00 0.00 2.87
1654 1705 9.189156 CTCCTTAATTTGGGATATTTCTTGTCA 57.811 33.333 0.52 0.00 0.00 3.58
1676 1727 1.482593 CAATTCAGCTACCCGACTCCT 59.517 52.381 0.00 0.00 0.00 3.69
1678 1729 2.166664 AGACAATTCAGCTACCCGACTC 59.833 50.000 0.00 0.00 0.00 3.36
1679 1730 2.093973 CAGACAATTCAGCTACCCGACT 60.094 50.000 0.00 0.00 0.00 4.18
1680 1731 2.094182 TCAGACAATTCAGCTACCCGAC 60.094 50.000 0.00 0.00 0.00 4.79
1682 1733 2.271800 GTCAGACAATTCAGCTACCCG 58.728 52.381 0.00 0.00 0.00 5.28
1702 1753 4.143115 ACAGTAGCGAATGAAACATCAACG 60.143 41.667 0.07 0.00 0.00 4.10
1773 1832 6.406370 TCCTTTCTACTACATGACCACATTG 58.594 40.000 0.00 0.00 34.15 2.82
1779 1838 5.801380 TGGTTTCCTTTCTACTACATGACC 58.199 41.667 0.00 0.00 0.00 4.02
1806 1865 9.651913 CACTTTATATGGCAAAAATTTACCAGT 57.348 29.630 11.73 7.00 37.04 4.00
1814 1873 7.769970 CCATCAACCACTTTATATGGCAAAAAT 59.230 33.333 0.00 0.00 41.31 1.82
1822 1881 9.874205 AAATTTGTCCATCAACCACTTTATATG 57.126 29.630 0.00 0.00 35.61 1.78
1831 1890 2.971330 AGGCAAATTTGTCCATCAACCA 59.029 40.909 24.29 0.00 35.61 3.67
1832 1891 3.683365 AGGCAAATTTGTCCATCAACC 57.317 42.857 24.29 13.87 35.61 3.77
1846 1905 3.181423 ACACCTTCCCTTTGATAGGCAAA 60.181 43.478 0.00 0.00 43.27 3.68
1854 1913 5.836024 ATGTACTAACACCTTCCCTTTGA 57.164 39.130 0.00 0.00 38.78 2.69
1871 1930 9.197694 CTCCAGTGCAGTATTAATCTTATGTAC 57.802 37.037 0.00 0.00 0.00 2.90
1918 2364 1.553248 CAGTCCGGGTGAAAGGTGATA 59.447 52.381 0.00 0.00 0.00 2.15
1933 2379 1.386533 CACATCCCTGAATGCAGTCC 58.613 55.000 12.27 0.00 40.63 3.85
2128 2574 4.306600 CAACAAACAGGGCATTAACCTTC 58.693 43.478 0.00 0.00 35.78 3.46
2137 2583 1.329171 AAGCTGCAACAAACAGGGCA 61.329 50.000 1.02 0.00 35.62 5.36
2150 2597 1.818642 AGGTGATCAACTGAAGCTGC 58.181 50.000 13.83 0.00 0.00 5.25
2247 2694 4.402829 TGGATTCGGGAAATTTTCAGTGA 58.597 39.130 11.09 0.00 0.00 3.41
2258 2705 5.623956 TTAGCTTAATCTGGATTCGGGAA 57.376 39.130 0.00 0.00 32.50 3.97
2259 2706 5.130477 AGTTTAGCTTAATCTGGATTCGGGA 59.870 40.000 0.00 0.00 32.50 5.14
2279 2726 3.334583 TGGAATCAGCTTCGCTAGTTT 57.665 42.857 0.00 0.00 36.40 2.66
2280 2727 3.265791 CTTGGAATCAGCTTCGCTAGTT 58.734 45.455 0.00 0.00 36.40 2.24
2287 2734 3.604582 ACAGCTACTTGGAATCAGCTTC 58.395 45.455 0.00 0.00 42.33 3.86
2334 2781 1.683011 GCTTTAGGCAGCAGATTCCCA 60.683 52.381 0.00 0.00 39.83 4.37
2336 2783 1.674962 CAGCTTTAGGCAGCAGATTCC 59.325 52.381 0.00 0.00 42.84 3.01
2425 2872 0.682209 ATGGCATCCAGTTCCTGCAC 60.682 55.000 0.00 0.00 36.75 4.57
2451 2898 4.336713 GCAATTCCTTCCTGTAGGATTCAC 59.663 45.833 0.66 0.00 43.66 3.18
2456 2903 3.889815 CATGCAATTCCTTCCTGTAGGA 58.110 45.455 0.00 0.00 42.56 2.94
2457 2904 2.360165 GCATGCAATTCCTTCCTGTAGG 59.640 50.000 14.21 0.00 36.59 3.18
2458 2905 3.018856 TGCATGCAATTCCTTCCTGTAG 58.981 45.455 20.30 0.00 0.00 2.74
2459 2906 3.084536 TGCATGCAATTCCTTCCTGTA 57.915 42.857 20.30 0.00 0.00 2.74
2460 2907 1.927487 TGCATGCAATTCCTTCCTGT 58.073 45.000 20.30 0.00 0.00 4.00
2461 2908 3.322211 TTTGCATGCAATTCCTTCCTG 57.678 42.857 32.27 0.00 35.70 3.86
2462 2909 4.563140 AATTTGCATGCAATTCCTTCCT 57.437 36.364 32.27 10.99 35.70 3.36
2463 2910 6.017687 GGAATAATTTGCATGCAATTCCTTCC 60.018 38.462 35.26 32.12 37.89 3.46
2464 2911 6.539464 TGGAATAATTTGCATGCAATTCCTTC 59.461 34.615 38.21 31.09 39.86 3.46
2465 2912 6.416415 TGGAATAATTTGCATGCAATTCCTT 58.584 32.000 38.21 27.88 39.86 3.36
2466 2913 5.991861 TGGAATAATTTGCATGCAATTCCT 58.008 33.333 38.21 25.36 39.86 3.36
2467 2914 6.870971 ATGGAATAATTTGCATGCAATTCC 57.129 33.333 35.60 35.60 41.72 3.01
2475 2922 8.538701 TGGACTTTAACATGGAATAATTTGCAT 58.461 29.630 0.00 0.00 43.81 3.96
2476 2923 7.901029 TGGACTTTAACATGGAATAATTTGCA 58.099 30.769 0.00 0.00 37.60 4.08
2477 2924 8.947055 ATGGACTTTAACATGGAATAATTTGC 57.053 30.769 0.00 0.00 0.00 3.68
2481 2928 9.936329 ACCTAATGGACTTTAACATGGAATAAT 57.064 29.630 0.00 0.00 37.04 1.28
2482 2929 9.762381 AACCTAATGGACTTTAACATGGAATAA 57.238 29.630 0.00 0.00 37.04 1.40
2483 2930 9.762381 AAACCTAATGGACTTTAACATGGAATA 57.238 29.630 0.00 0.00 37.04 1.75
2484 2931 8.664669 AAACCTAATGGACTTTAACATGGAAT 57.335 30.769 0.00 0.00 37.04 3.01
2485 2932 8.485578 AAAACCTAATGGACTTTAACATGGAA 57.514 30.769 0.00 0.00 37.04 3.53
2486 2933 8.364142 CAAAAACCTAATGGACTTTAACATGGA 58.636 33.333 0.00 0.00 37.04 3.41
2487 2934 7.117667 GCAAAAACCTAATGGACTTTAACATGG 59.882 37.037 0.00 0.00 37.04 3.66
2488 2935 7.872483 AGCAAAAACCTAATGGACTTTAACATG 59.128 33.333 0.00 0.00 37.04 3.21
2489 2936 7.962441 AGCAAAAACCTAATGGACTTTAACAT 58.038 30.769 0.00 0.00 37.04 2.71
2490 2937 7.354751 AGCAAAAACCTAATGGACTTTAACA 57.645 32.000 0.00 0.00 37.04 2.41
2491 2938 9.923143 AATAGCAAAAACCTAATGGACTTTAAC 57.077 29.630 0.00 0.00 37.04 2.01
2554 3001 5.766222 AGAAAGAATAGCTTGCAAGTTGTG 58.234 37.500 26.55 3.15 36.80 3.33
2555 3002 6.264067 AGAAGAAAGAATAGCTTGCAAGTTGT 59.736 34.615 26.55 17.10 36.80 3.32
2562 3009 9.335891 GAAAAAGTAGAAGAAAGAATAGCTTGC 57.664 33.333 0.00 0.00 36.80 4.01
2626 3073 9.508567 GAGTACTGCAAATGGAAATAGAAATTC 57.491 33.333 0.00 0.00 0.00 2.17
2633 3080 8.579850 AATGAAGAGTACTGCAAATGGAAATA 57.420 30.769 0.00 0.00 35.05 1.40
2739 3186 0.251916 TTCTTGGTATCGGGGCACAG 59.748 55.000 0.00 0.00 0.00 3.66
2902 3349 4.272489 TGACAGGGGCAATTATTTGAGAG 58.728 43.478 1.55 0.00 34.60 3.20
2903 3350 4.314522 TGACAGGGGCAATTATTTGAGA 57.685 40.909 1.55 0.00 34.60 3.27
2908 3365 6.018433 AGAGTTATGACAGGGGCAATTATT 57.982 37.500 0.00 0.00 0.00 1.40
2923 3380 5.869753 AGCAACAGTAAGCAAGAGTTATG 57.130 39.130 1.19 0.00 0.00 1.90
3088 3545 2.745821 CCGCATGGTATCATCAATCAGG 59.254 50.000 0.00 0.00 0.00 3.86
3214 3671 6.798207 TTTAAATAATTAATGCCACGCACG 57.202 33.333 0.00 0.00 43.04 5.34
3235 3692 4.338879 ACAGCAATACCTGAAGCTCATTT 58.661 39.130 0.00 0.00 34.61 2.32
3288 3745 4.260497 GGCTATCCGTTTAAATCCGTCAAC 60.260 45.833 0.00 0.00 0.00 3.18
3360 3817 6.694411 CCATCTCTTCATTATTTTTGCTTCGG 59.306 38.462 0.00 0.00 0.00 4.30
3391 3848 3.860641 TGAAGCTTGATTGACGCTATCA 58.139 40.909 2.10 0.00 32.90 2.15
3397 3854 7.427606 GTGATTAAAGATGAAGCTTGATTGACG 59.572 37.037 2.10 0.00 0.00 4.35
3436 3893 3.680196 GCTGACACTCTGAGTAATTCCCC 60.680 52.174 10.47 0.00 0.00 4.81
3530 3987 4.760530 ATAAGCAGATTGTACCAGCAGA 57.239 40.909 0.00 0.00 0.00 4.26
3619 4076 4.096532 CCATCGCTCTTTACACTCTCAGTA 59.903 45.833 0.00 0.00 0.00 2.74
3651 4108 1.074889 ACACCCTAACACAATCCCCAC 59.925 52.381 0.00 0.00 0.00 4.61
3655 4112 2.289195 TGACGACACCCTAACACAATCC 60.289 50.000 0.00 0.00 0.00 3.01
3703 4160 2.360475 GGTCCAGAGCAAGGTGGC 60.360 66.667 0.00 0.00 33.43 5.01
3769 4226 6.013379 TCACAAATTCTGAGTATGGTTCCTCT 60.013 38.462 0.00 0.00 0.00 3.69
3876 4333 6.239217 ACAAGATCAGCACATCCTTGTATA 57.761 37.500 0.00 0.00 33.76 1.47
3971 4428 6.531503 TGAAGGAAGACCATACTCAAGTAG 57.468 41.667 0.00 0.00 38.94 2.57
4222 4681 3.703556 TGTTCAGAAAAAGCATGGTTCCA 59.296 39.130 11.16 0.00 0.00 3.53
4224 4683 6.849588 AATTGTTCAGAAAAAGCATGGTTC 57.150 33.333 11.16 0.00 0.00 3.62
4227 4686 5.759273 TGGAAATTGTTCAGAAAAAGCATGG 59.241 36.000 0.00 0.00 35.25 3.66
4252 4711 2.716217 AGAGACCATGTAAAAGCCTGC 58.284 47.619 0.00 0.00 0.00 4.85
4267 4726 6.553524 AGTAGCACGTACAATCTTAAGAGAC 58.446 40.000 11.53 5.59 32.21 3.36
4445 4906 6.255237 CACATGATCATCTGAACTGTACTGAC 59.745 42.308 4.86 1.42 0.00 3.51
4587 5103 4.690122 AGATTGAATTGGCTGCAATAAGC 58.310 39.130 0.50 0.00 45.96 3.09
4588 5104 9.403110 GTATAAGATTGAATTGGCTGCAATAAG 57.597 33.333 0.50 0.00 32.80 1.73
4698 5221 7.488792 TGCCTCAAAACATCAAAAATATCATCG 59.511 33.333 0.00 0.00 0.00 3.84
4708 5231 3.318839 CAGGTCTGCCTCAAAACATCAAA 59.681 43.478 0.00 0.00 44.97 2.69
4719 5242 0.326264 ATGTTGACCAGGTCTGCCTC 59.674 55.000 20.82 7.04 44.97 4.70
4791 5332 3.699538 GTGATCCCCAAATGGTAGTTTCC 59.300 47.826 0.00 0.00 0.00 3.13
4930 5473 4.740695 GCAACAAAACCGTACAAAATGCTA 59.259 37.500 0.00 0.00 0.00 3.49
4978 5522 1.064685 AGGGAAAATTACCTGAGCCGG 60.065 52.381 0.00 0.00 41.02 6.13
5064 5608 0.310854 CAGAAAAGCACGGGTGTTCC 59.689 55.000 0.25 0.00 0.00 3.62
5151 5714 0.557238 ATGGGGGCATAATGTGAGCA 59.443 50.000 0.00 0.00 0.00 4.26
5199 5762 7.716560 ACTTCTATGTGATTGTATATGCTGCAA 59.283 33.333 6.36 0.00 33.77 4.08
5381 5955 4.251103 ACAGAGGGGGTATTTCATTTCC 57.749 45.455 0.00 0.00 0.00 3.13
5437 6011 6.716628 TCCCTCCATATCAAAATACAAGATGC 59.283 38.462 0.00 0.00 0.00 3.91
5464 6038 4.081917 GGTTGTTCCTTCTCTAGAGAGGTG 60.082 50.000 25.34 18.11 42.30 4.00
5479 6066 1.328279 CAAGTTCCCAGGGTTGTTCC 58.672 55.000 5.01 0.00 0.00 3.62
5508 6095 8.463930 TGAATAATGTCAGTTCTCAGGTTTTT 57.536 30.769 0.00 0.00 0.00 1.94
5509 6096 8.463930 TTGAATAATGTCAGTTCTCAGGTTTT 57.536 30.769 0.00 0.00 0.00 2.43
5510 6097 8.641498 ATTGAATAATGTCAGTTCTCAGGTTT 57.359 30.769 0.00 0.00 0.00 3.27
5511 6098 8.641498 AATTGAATAATGTCAGTTCTCAGGTT 57.359 30.769 0.00 0.00 0.00 3.50
5512 6099 8.641498 AAATTGAATAATGTCAGTTCTCAGGT 57.359 30.769 0.00 0.00 28.27 4.00
5513 6100 9.918630 AAAAATTGAATAATGTCAGTTCTCAGG 57.081 29.630 0.00 0.00 28.27 3.86
5595 6284 4.525912 AGATTGGCTGTTTTGGAATGAC 57.474 40.909 0.00 0.00 0.00 3.06
5646 6663 5.772393 TTGTATGTAGGGGAAACACTCAT 57.228 39.130 0.00 0.00 45.07 2.90
5647 6664 5.514136 CCTTTGTATGTAGGGGAAACACTCA 60.514 44.000 0.00 0.00 45.07 3.41
5660 6677 4.076394 GACAGTTTGGCCCTTTGTATGTA 58.924 43.478 0.00 0.00 0.00 2.29
5691 6709 7.679144 TGCATAGCTACGACGTAACTATATAC 58.321 38.462 23.52 17.79 29.67 1.47
5698 6716 3.609373 TGTTTGCATAGCTACGACGTAAC 59.391 43.478 9.32 4.64 0.00 2.50
5718 6736 9.511144 GCAATACAGTTAAAACAGTTAACTTGT 57.489 29.630 5.07 7.88 41.69 3.16
5762 6796 5.371526 TGGTTCTTGGCAAAAATGCATTTA 58.628 33.333 24.35 6.29 36.33 1.40
5765 6800 3.488778 TGGTTCTTGGCAAAAATGCAT 57.511 38.095 0.00 0.00 36.33 3.96
5766 6801 2.996249 TGGTTCTTGGCAAAAATGCA 57.004 40.000 0.00 0.00 36.33 3.96
5767 6802 4.996758 ACTATTGGTTCTTGGCAAAAATGC 59.003 37.500 0.00 0.00 0.00 3.56
5768 6803 5.990996 ACACTATTGGTTCTTGGCAAAAATG 59.009 36.000 0.00 0.00 0.00 2.32
5769 6804 6.173427 ACACTATTGGTTCTTGGCAAAAAT 57.827 33.333 0.00 0.00 0.00 1.82
5772 6807 5.381757 ACTACACTATTGGTTCTTGGCAAA 58.618 37.500 0.00 0.00 0.00 3.68
5773 6808 4.980573 ACTACACTATTGGTTCTTGGCAA 58.019 39.130 0.00 0.00 0.00 4.52
5774 6809 4.634012 ACTACACTATTGGTTCTTGGCA 57.366 40.909 0.00 0.00 0.00 4.92
5775 6810 4.379499 GCAACTACACTATTGGTTCTTGGC 60.379 45.833 0.00 0.00 0.00 4.52
5776 6811 5.003804 AGCAACTACACTATTGGTTCTTGG 58.996 41.667 0.00 0.00 32.82 3.61
5777 6812 5.934625 AGAGCAACTACACTATTGGTTCTTG 59.065 40.000 0.00 0.00 36.70 3.02
5811 6846 5.577164 GTGATCCAAGTCACAGTACATGTAC 59.423 44.000 25.51 25.51 46.04 2.90
5837 6880 5.342259 GCGGATGTCAAATAAACAAGAACAC 59.658 40.000 0.00 0.00 0.00 3.32
5860 6903 6.021596 CAGTACATGTTTCCTCGTTAAATGC 58.978 40.000 2.30 0.00 0.00 3.56
5866 6921 6.293955 CCAAATTCAGTACATGTTTCCTCGTT 60.294 38.462 2.30 0.00 0.00 3.85
5984 7039 9.825109 AAAGTCTCTCTGAATTAGCTAATTACC 57.175 33.333 27.50 18.09 36.13 2.85
6005 7060 8.433893 GTTATCTCGTCTCAACCTTTTAAAGTC 58.566 37.037 3.91 0.00 0.00 3.01
6047 7102 1.827399 TTCCTTGCGGAGGTCCACTC 61.827 60.000 5.91 0.00 46.39 3.51
6059 7114 3.347216 ACCTGTACACATGATTCCTTGC 58.653 45.455 0.00 0.00 0.00 4.01
6090 7145 7.017645 CCTTGATGAAACATTAGAAGACGTTG 58.982 38.462 0.00 0.00 0.00 4.10
6091 7146 6.934645 TCCTTGATGAAACATTAGAAGACGTT 59.065 34.615 0.00 0.00 0.00 3.99
6092 7147 6.464222 TCCTTGATGAAACATTAGAAGACGT 58.536 36.000 0.00 0.00 0.00 4.34
6093 7148 6.968131 TCCTTGATGAAACATTAGAAGACG 57.032 37.500 0.00 0.00 0.00 4.18
6094 7149 7.362142 GGGTTCCTTGATGAAACATTAGAAGAC 60.362 40.741 0.00 0.00 33.48 3.01
6095 7150 6.659242 GGGTTCCTTGATGAAACATTAGAAGA 59.341 38.462 0.00 0.00 33.48 2.87
6141 7202 0.464870 CCCTCTGCCTCTCATCTGTG 59.535 60.000 0.00 0.00 0.00 3.66
6148 7209 0.957888 GTTGTTGCCCTCTGCCTCTC 60.958 60.000 0.00 0.00 40.16 3.20
6199 7260 6.262273 ACAAACAACAGATTCCGACTAATGTT 59.738 34.615 0.00 0.00 31.53 2.71
6227 7288 8.725405 TTACATTACATTACACGACAATGGAT 57.275 30.769 11.19 4.62 37.64 3.41
6291 7357 1.728971 CTTGTTCAGTAGCCGAAGCAG 59.271 52.381 0.00 0.00 43.56 4.24
6327 7393 3.067106 ACAAAGGTAATGCACTCACTCG 58.933 45.455 0.00 0.00 0.00 4.18
6336 7402 4.218417 ACCATCACTGAACAAAGGTAATGC 59.782 41.667 0.00 0.00 0.00 3.56
6357 7423 7.339466 TGAGATGGGAAAGCTTTAAATAGAACC 59.661 37.037 12.68 6.22 0.00 3.62
6360 7426 7.056635 CCTGAGATGGGAAAGCTTTAAATAGA 58.943 38.462 12.68 0.00 0.00 1.98
6366 7432 3.873801 GCACCTGAGATGGGAAAGCTTTA 60.874 47.826 12.68 0.00 0.00 1.85
6371 7437 0.622665 AGGCACCTGAGATGGGAAAG 59.377 55.000 0.00 0.00 0.00 2.62
6378 7444 3.445008 TCAAGAACTAGGCACCTGAGAT 58.555 45.455 0.00 0.00 0.00 2.75
6393 7459 8.416329 ACGGAAGTAGTAGTAAAAGTTCAAGAA 58.584 33.333 0.00 0.00 46.88 2.52
6394 7460 7.945134 ACGGAAGTAGTAGTAAAAGTTCAAGA 58.055 34.615 0.00 0.00 46.88 3.02
6411 7477 7.830201 ACAATTTTATATTGTGGGACGGAAGTA 59.170 33.333 0.48 0.00 42.00 2.24
6412 7478 6.661805 ACAATTTTATATTGTGGGACGGAAGT 59.338 34.615 0.48 0.00 43.52 3.01
6414 7480 7.469537 AACAATTTTATATTGTGGGACGGAA 57.530 32.000 2.07 0.00 40.94 4.30
6415 7481 7.469537 AAACAATTTTATATTGTGGGACGGA 57.530 32.000 2.07 0.00 40.94 4.69
6416 7482 7.412455 GCAAAACAATTTTATATTGTGGGACGG 60.412 37.037 2.07 0.00 40.94 4.79
6417 7483 7.116948 TGCAAAACAATTTTATATTGTGGGACG 59.883 33.333 2.07 0.00 40.94 4.79
6418 7484 8.316640 TGCAAAACAATTTTATATTGTGGGAC 57.683 30.769 2.07 0.00 40.94 4.46
6420 7486 7.750014 GCTTGCAAAACAATTTTATATTGTGGG 59.250 33.333 0.00 0.00 40.94 4.61
6421 7487 8.505625 AGCTTGCAAAACAATTTTATATTGTGG 58.494 29.630 0.00 0.00 40.94 4.17
6429 7495 7.095857 CCGATGTTAGCTTGCAAAACAATTTTA 60.096 33.333 16.73 0.00 37.72 1.52
6434 7500 3.637432 CCGATGTTAGCTTGCAAAACAA 58.363 40.909 16.73 1.42 36.75 2.83
6435 7501 2.606795 GCCGATGTTAGCTTGCAAAACA 60.607 45.455 15.49 15.49 37.51 2.83
6436 7502 1.985684 GCCGATGTTAGCTTGCAAAAC 59.014 47.619 0.00 2.86 0.00 2.43
6437 7503 1.611006 TGCCGATGTTAGCTTGCAAAA 59.389 42.857 0.00 0.00 0.00 2.44
6438 7504 1.242989 TGCCGATGTTAGCTTGCAAA 58.757 45.000 0.00 0.00 0.00 3.68
6440 7506 1.462616 AATGCCGATGTTAGCTTGCA 58.537 45.000 0.00 0.00 0.00 4.08
6493 8125 2.286067 GCGAGATTCTTTGGAATGCGAG 60.286 50.000 11.79 0.00 41.68 5.03
6494 8126 1.665679 GCGAGATTCTTTGGAATGCGA 59.334 47.619 11.79 0.00 41.68 5.10
6619 8251 2.651232 GCGCGCTAGGACTACGTG 60.651 66.667 26.67 9.11 40.12 4.49
6720 8352 1.153647 CGTGGCTCCGTGCATCTAA 60.154 57.895 0.00 0.00 45.15 2.10
6721 8353 2.494445 CGTGGCTCCGTGCATCTA 59.506 61.111 0.00 0.00 45.15 1.98
6733 8369 4.962122 CACTGTTGCACGCGTGGC 62.962 66.667 37.47 28.75 0.00 5.01
6752 8389 4.508047 GGAACCATGATGCCCAGATCTTAT 60.508 45.833 0.00 0.00 0.00 1.73
6753 8390 3.181440 GGAACCATGATGCCCAGATCTTA 60.181 47.826 0.00 0.00 0.00 2.10
6788 8425 2.982130 GGAGGTGGCGATGTCTGT 59.018 61.111 0.00 0.00 0.00 3.41
6800 8437 1.883275 GATGATCATCGTCTCGGAGGT 59.117 52.381 19.55 0.00 29.96 3.85
6823 8460 2.464157 GTTCAGTGAACCTCTCCCTG 57.536 55.000 23.03 0.00 36.65 4.45
6893 8542 1.523711 ATACCTGCACCGGCGATTG 60.524 57.895 9.30 6.25 45.35 2.67
6894 8543 1.523711 CATACCTGCACCGGCGATT 60.524 57.895 9.30 0.00 45.35 3.34
6895 8544 1.396607 TACATACCTGCACCGGCGAT 61.397 55.000 9.30 0.00 45.35 4.58
6896 8545 2.053277 TACATACCTGCACCGGCGA 61.053 57.895 9.30 0.00 45.35 5.54
6897 8546 1.881252 GTACATACCTGCACCGGCG 60.881 63.158 0.00 0.00 45.35 6.46
6898 8547 1.881252 CGTACATACCTGCACCGGC 60.881 63.158 0.00 0.00 41.68 6.13
6903 8552 3.244156 CGTGTTTACGTACATACCTGCA 58.756 45.455 0.00 0.00 44.99 4.41
6915 8564 8.700902 GTCAAATCTGCTGACTCGTGTTTACG 62.701 46.154 0.00 0.00 41.31 3.18
6919 8576 2.802816 GTCAAATCTGCTGACTCGTGTT 59.197 45.455 0.00 0.00 40.10 3.32
6936 8593 3.961480 ATTCAGACGAGGACATGTCAA 57.039 42.857 26.47 10.44 37.58 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.