Multiple sequence alignment - TraesCS6B01G353800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G353800 chr6B 100.000 6072 0 0 1 6072 619524775 619530846 0.000000e+00 11213.0
1 TraesCS6B01G353800 chr6B 89.540 239 22 3 74 310 439062328 439062091 3.560000e-77 300.0
2 TraesCS6B01G353800 chr6B 83.750 80 6 6 3812 3888 619528556 619528631 1.090000e-07 69.4
3 TraesCS6B01G353800 chr6B 83.750 80 6 6 3782 3857 619528586 619528662 1.090000e-07 69.4
4 TraesCS6B01G353800 chr6D 94.315 4714 180 35 1010 5689 411800899 411805558 0.000000e+00 7140.0
5 TraesCS6B01G353800 chr6D 85.150 734 57 28 308 1016 411799793 411800499 0.000000e+00 704.0
6 TraesCS6B01G353800 chr6D 82.651 513 30 17 5619 6072 411805627 411806139 3.410000e-107 399.0
7 TraesCS6B01G353800 chr6D 83.750 80 6 4 3812 3888 411803661 411803736 1.090000e-07 69.4
8 TraesCS6B01G353800 chr6D 83.750 80 6 6 3782 3857 411803691 411803767 1.090000e-07 69.4
9 TraesCS6B01G353800 chr6A 92.419 2625 114 31 3511 6072 556742255 556744857 0.000000e+00 3666.0
10 TraesCS6B01G353800 chr6A 90.532 1542 92 21 624 2151 556739825 556741326 0.000000e+00 1989.0
11 TraesCS6B01G353800 chr6A 94.433 934 38 8 2194 3122 556741320 556742244 0.000000e+00 1424.0
12 TraesCS6B01G353800 chr6A 84.337 83 6 5 3813 3892 556742527 556742605 2.350000e-09 75.0
13 TraesCS6B01G353800 chr1B 90.438 251 21 3 68 317 184773260 184773012 1.630000e-85 327.0
14 TraesCS6B01G353800 chr7B 85.484 310 39 4 4660 4968 52981314 52981618 9.820000e-83 318.0
15 TraesCS6B01G353800 chr7B 84.868 304 40 5 4666 4968 52948379 52948081 9.890000e-78 302.0
16 TraesCS6B01G353800 chr7B 86.831 243 29 3 72 313 217461903 217461663 1.000000e-67 268.0
17 TraesCS6B01G353800 chr7B 79.703 202 41 0 2209 2410 79388312 79388513 4.900000e-31 147.0
18 TraesCS6B01G353800 chr4B 88.618 246 25 3 70 313 156534184 156534428 4.600000e-76 296.0
19 TraesCS6B01G353800 chr5B 88.430 242 25 3 72 312 590078039 590077800 7.700000e-74 289.0
20 TraesCS6B01G353800 chr2B 87.251 251 23 6 62 310 236174159 236174402 1.670000e-70 278.0
21 TraesCS6B01G353800 chr3B 86.508 252 30 3 70 319 17367648 17367399 2.160000e-69 274.0
22 TraesCS6B01G353800 chr3B 88.412 233 20 3 71 302 229307870 229307644 2.160000e-69 274.0
23 TraesCS6B01G353800 chr3B 87.448 239 26 4 75 311 804006462 804006226 7.760000e-69 272.0
24 TraesCS6B01G353800 chr5A 87.387 222 14 2 5623 5833 153180880 153180662 6.080000e-60 243.0
25 TraesCS6B01G353800 chr7A 81.643 207 38 0 2209 2415 122760924 122761130 8.090000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G353800 chr6B 619524775 619530846 6071 False 3783.933333 11213 89.166667 1 6072 3 chr6B.!!$F1 6071
1 TraesCS6B01G353800 chr6D 411799793 411806139 6346 False 1676.360000 7140 85.923200 308 6072 5 chr6D.!!$F1 5764
2 TraesCS6B01G353800 chr6A 556739825 556744857 5032 False 1788.500000 3666 90.430250 624 6072 4 chr6A.!!$F1 5448

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.035439 ACCGTTCGGGATGAAATGCT 60.035 50.000 15.66 0.00 38.60 3.79 F
665 681 0.307760 CACCACACCAGCGAAGAAAC 59.692 55.000 0.00 0.00 0.00 2.78 F
1467 1917 0.391130 CAATTCGGGAGGAGTTCGCA 60.391 55.000 0.00 0.00 38.60 5.10 F
1813 2269 0.465705 CAAGGCGCTCCTCCTATTCA 59.534 55.000 7.64 0.00 43.40 2.57 F
2095 2551 0.888285 GCCACTGCTGCTTCTCAAGT 60.888 55.000 0.00 0.00 33.53 3.16 F
3195 3656 1.013596 CACCAGAACAGCGACACAAA 58.986 50.000 0.00 0.00 0.00 2.83 F
3398 3877 1.156736 CTTTTCTGTACCACCAGCCG 58.843 55.000 0.00 0.00 32.32 5.52 F
4384 4871 2.122167 CGCCTACCGGAGAGCTCTT 61.122 63.158 19.36 4.03 30.72 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1809 2265 0.824109 TCGGAGCCGTTGATCTGAAT 59.176 50.000 8.96 0.00 39.27 2.57 R
2354 2810 0.827368 GGAGTCTCTGGTAGGCCTTG 59.173 60.000 12.58 0.00 35.27 3.61 R
3378 3857 0.881796 GGCTGGTGGTACAGAAAAGC 59.118 55.000 0.00 0.00 41.80 3.51 R
3574 4055 4.093261 AGCTGTGTTGTGCAAAATGAAAAC 59.907 37.500 0.00 0.00 0.00 2.43 R
3893 4374 1.875576 GCACAGAGCAGAATATCCCCG 60.876 57.143 0.00 0.00 44.79 5.73 R
4637 5124 2.548067 CGGGTATGGCATGAGGTACTTC 60.548 54.545 10.98 0.00 41.55 3.01 R
4789 5276 4.475135 GGGACTTGCGCTCCTCCC 62.475 72.222 17.55 17.55 35.77 4.30 R
5927 6630 0.310854 GGCTCCACAGTTTTTCGGTG 59.689 55.000 0.00 0.00 40.84 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.998099 TTTTCAATGATGACCGTGCAA 57.002 38.095 0.00 0.00 34.61 4.08
22 23 3.998099 TTTCAATGATGACCGTGCAAA 57.002 38.095 0.00 0.00 34.61 3.68
23 24 3.557577 TTCAATGATGACCGTGCAAAG 57.442 42.857 0.00 0.00 34.61 2.77
24 25 2.777094 TCAATGATGACCGTGCAAAGA 58.223 42.857 0.00 0.00 0.00 2.52
25 26 3.145286 TCAATGATGACCGTGCAAAGAA 58.855 40.909 0.00 0.00 0.00 2.52
26 27 3.758023 TCAATGATGACCGTGCAAAGAAT 59.242 39.130 0.00 0.00 0.00 2.40
27 28 3.770263 ATGATGACCGTGCAAAGAATG 57.230 42.857 0.00 0.00 0.00 2.67
28 29 2.777094 TGATGACCGTGCAAAGAATGA 58.223 42.857 0.00 0.00 0.00 2.57
29 30 2.483877 TGATGACCGTGCAAAGAATGAC 59.516 45.455 0.00 0.00 0.00 3.06
30 31 1.960417 TGACCGTGCAAAGAATGACA 58.040 45.000 0.00 0.00 0.00 3.58
31 32 1.872952 TGACCGTGCAAAGAATGACAG 59.127 47.619 0.00 0.00 0.00 3.51
32 33 2.143122 GACCGTGCAAAGAATGACAGA 58.857 47.619 0.00 0.00 0.00 3.41
33 34 2.146342 ACCGTGCAAAGAATGACAGAG 58.854 47.619 0.00 0.00 0.00 3.35
34 35 2.224281 ACCGTGCAAAGAATGACAGAGA 60.224 45.455 0.00 0.00 0.00 3.10
35 36 3.005554 CCGTGCAAAGAATGACAGAGAT 58.994 45.455 0.00 0.00 0.00 2.75
36 37 4.183865 CCGTGCAAAGAATGACAGAGATA 58.816 43.478 0.00 0.00 0.00 1.98
37 38 4.631377 CCGTGCAAAGAATGACAGAGATAA 59.369 41.667 0.00 0.00 0.00 1.75
38 39 5.295292 CCGTGCAAAGAATGACAGAGATAAT 59.705 40.000 0.00 0.00 0.00 1.28
39 40 6.479990 CCGTGCAAAGAATGACAGAGATAATA 59.520 38.462 0.00 0.00 0.00 0.98
40 41 7.011389 CCGTGCAAAGAATGACAGAGATAATAA 59.989 37.037 0.00 0.00 0.00 1.40
41 42 8.390354 CGTGCAAAGAATGACAGAGATAATAAA 58.610 33.333 0.00 0.00 0.00 1.40
72 73 6.737254 ATTGTGTCCTTCCTATACAAAACG 57.263 37.500 0.00 0.00 35.23 3.60
73 74 4.571919 TGTGTCCTTCCTATACAAAACGG 58.428 43.478 0.00 0.00 0.00 4.44
74 75 3.373130 GTGTCCTTCCTATACAAAACGGC 59.627 47.826 0.00 0.00 0.00 5.68
75 76 3.008157 TGTCCTTCCTATACAAAACGGCA 59.992 43.478 0.00 0.00 0.00 5.69
76 77 4.004982 GTCCTTCCTATACAAAACGGCAA 58.995 43.478 0.00 0.00 0.00 4.52
77 78 4.638865 GTCCTTCCTATACAAAACGGCAAT 59.361 41.667 0.00 0.00 0.00 3.56
78 79 4.638421 TCCTTCCTATACAAAACGGCAATG 59.362 41.667 0.00 0.00 0.00 2.82
79 80 4.638421 CCTTCCTATACAAAACGGCAATGA 59.362 41.667 0.00 0.00 0.00 2.57
80 81 5.299279 CCTTCCTATACAAAACGGCAATGAT 59.701 40.000 0.00 0.00 0.00 2.45
81 82 6.485313 CCTTCCTATACAAAACGGCAATGATA 59.515 38.462 0.00 0.00 0.00 2.15
82 83 7.012894 CCTTCCTATACAAAACGGCAATGATAA 59.987 37.037 0.00 0.00 0.00 1.75
83 84 7.867305 TCCTATACAAAACGGCAATGATAAA 57.133 32.000 0.00 0.00 0.00 1.40
84 85 7.699566 TCCTATACAAAACGGCAATGATAAAC 58.300 34.615 0.00 0.00 0.00 2.01
85 86 6.915843 CCTATACAAAACGGCAATGATAAACC 59.084 38.462 0.00 0.00 0.00 3.27
86 87 4.864704 ACAAAACGGCAATGATAAACCT 57.135 36.364 0.00 0.00 0.00 3.50
87 88 4.555262 ACAAAACGGCAATGATAAACCTG 58.445 39.130 0.00 0.00 0.00 4.00
88 89 4.279671 ACAAAACGGCAATGATAAACCTGA 59.720 37.500 0.00 0.00 0.00 3.86
89 90 5.221342 ACAAAACGGCAATGATAAACCTGAA 60.221 36.000 0.00 0.00 0.00 3.02
90 91 4.434713 AACGGCAATGATAAACCTGAAC 57.565 40.909 0.00 0.00 0.00 3.18
91 92 3.417101 ACGGCAATGATAAACCTGAACA 58.583 40.909 0.00 0.00 0.00 3.18
92 93 4.016444 ACGGCAATGATAAACCTGAACAT 58.984 39.130 0.00 0.00 0.00 2.71
93 94 4.462483 ACGGCAATGATAAACCTGAACATT 59.538 37.500 0.00 0.00 0.00 2.71
94 95 5.036737 CGGCAATGATAAACCTGAACATTC 58.963 41.667 0.00 0.00 0.00 2.67
95 96 5.036737 GGCAATGATAAACCTGAACATTCG 58.963 41.667 0.00 0.00 0.00 3.34
96 97 5.036737 GCAATGATAAACCTGAACATTCGG 58.963 41.667 0.00 0.00 0.00 4.30
97 98 5.163663 GCAATGATAAACCTGAACATTCGGA 60.164 40.000 1.83 0.00 35.56 4.55
98 99 6.460123 GCAATGATAAACCTGAACATTCGGAT 60.460 38.462 1.83 0.00 35.56 4.18
99 100 7.483307 CAATGATAAACCTGAACATTCGGATT 58.517 34.615 1.83 3.44 35.56 3.01
100 101 7.645058 ATGATAAACCTGAACATTCGGATTT 57.355 32.000 1.83 0.16 35.56 2.17
101 102 7.461182 TGATAAACCTGAACATTCGGATTTT 57.539 32.000 0.00 2.73 35.56 1.82
102 103 8.568676 TGATAAACCTGAACATTCGGATTTTA 57.431 30.769 0.00 4.54 35.56 1.52
103 104 9.015367 TGATAAACCTGAACATTCGGATTTTAA 57.985 29.630 0.00 0.00 35.56 1.52
108 109 9.801873 AACCTGAACATTCGGATTTTAATTATG 57.198 29.630 1.83 0.00 35.56 1.90
109 110 8.413229 ACCTGAACATTCGGATTTTAATTATGG 58.587 33.333 1.83 0.00 35.56 2.74
110 111 7.382218 CCTGAACATTCGGATTTTAATTATGGC 59.618 37.037 1.83 0.00 35.56 4.40
111 112 7.776107 TGAACATTCGGATTTTAATTATGGCA 58.224 30.769 0.00 0.00 0.00 4.92
112 113 8.253810 TGAACATTCGGATTTTAATTATGGCAA 58.746 29.630 0.00 0.00 0.00 4.52
113 114 8.419076 AACATTCGGATTTTAATTATGGCAAC 57.581 30.769 0.00 0.00 0.00 4.17
114 115 6.983890 ACATTCGGATTTTAATTATGGCAACC 59.016 34.615 0.00 0.00 0.00 3.77
115 116 6.783708 TTCGGATTTTAATTATGGCAACCT 57.216 33.333 0.00 0.00 0.00 3.50
116 117 6.142818 TCGGATTTTAATTATGGCAACCTG 57.857 37.500 0.00 0.00 0.00 4.00
117 118 5.888724 TCGGATTTTAATTATGGCAACCTGA 59.111 36.000 0.00 0.00 0.00 3.86
118 119 6.378564 TCGGATTTTAATTATGGCAACCTGAA 59.621 34.615 0.00 0.00 0.00 3.02
119 120 7.069331 TCGGATTTTAATTATGGCAACCTGAAT 59.931 33.333 0.00 0.00 0.00 2.57
120 121 7.169645 CGGATTTTAATTATGGCAACCTGAATG 59.830 37.037 0.00 0.00 0.00 2.67
121 122 7.986889 GGATTTTAATTATGGCAACCTGAATGT 59.013 33.333 0.00 0.00 0.00 2.71
122 123 9.382275 GATTTTAATTATGGCAACCTGAATGTT 57.618 29.630 0.00 0.00 0.00 2.71
123 124 9.737844 ATTTTAATTATGGCAACCTGAATGTTT 57.262 25.926 0.00 0.00 0.00 2.83
124 125 9.566432 TTTTAATTATGGCAACCTGAATGTTTT 57.434 25.926 0.00 0.00 0.00 2.43
125 126 9.566432 TTTAATTATGGCAACCTGAATGTTTTT 57.434 25.926 0.00 0.00 0.00 1.94
149 150 9.658475 TTTTATGTCAATTTTAGTTCACGTGAG 57.342 29.630 19.11 3.80 0.00 3.51
150 151 5.666969 TGTCAATTTTAGTTCACGTGAGG 57.333 39.130 19.11 1.80 0.00 3.86
151 152 5.120399 TGTCAATTTTAGTTCACGTGAGGT 58.880 37.500 19.11 12.29 0.00 3.85
152 153 5.587043 TGTCAATTTTAGTTCACGTGAGGTT 59.413 36.000 19.11 10.65 0.00 3.50
153 154 5.907391 GTCAATTTTAGTTCACGTGAGGTTG 59.093 40.000 19.11 15.09 0.00 3.77
154 155 5.818336 TCAATTTTAGTTCACGTGAGGTTGA 59.182 36.000 19.11 16.80 0.00 3.18
155 156 5.668558 ATTTTAGTTCACGTGAGGTTGAC 57.331 39.130 19.11 13.50 0.00 3.18
156 157 3.804786 TTAGTTCACGTGAGGTTGACA 57.195 42.857 19.11 0.00 0.00 3.58
157 158 2.684001 AGTTCACGTGAGGTTGACAA 57.316 45.000 19.11 0.00 0.00 3.18
158 159 2.980568 AGTTCACGTGAGGTTGACAAA 58.019 42.857 19.11 0.00 0.00 2.83
159 160 2.676342 AGTTCACGTGAGGTTGACAAAC 59.324 45.455 19.11 10.53 35.40 2.93
160 161 2.388310 TCACGTGAGGTTGACAAACA 57.612 45.000 15.76 0.00 38.10 2.83
161 162 2.912771 TCACGTGAGGTTGACAAACAT 58.087 42.857 15.76 0.00 38.10 2.71
162 163 3.275143 TCACGTGAGGTTGACAAACATT 58.725 40.909 15.76 0.00 38.10 2.71
163 164 3.064682 TCACGTGAGGTTGACAAACATTG 59.935 43.478 15.76 0.00 38.10 2.82
164 165 2.223479 ACGTGAGGTTGACAAACATTGC 60.223 45.455 5.91 0.00 38.10 3.56
165 166 2.223456 CGTGAGGTTGACAAACATTGCA 60.223 45.455 5.91 0.00 38.10 4.08
166 167 3.733380 CGTGAGGTTGACAAACATTGCAA 60.733 43.478 5.91 0.00 38.10 4.08
167 168 4.370917 GTGAGGTTGACAAACATTGCAAT 58.629 39.130 5.99 5.99 38.10 3.56
168 169 4.810491 GTGAGGTTGACAAACATTGCAATT 59.190 37.500 9.83 0.00 38.10 2.32
169 170 5.294060 GTGAGGTTGACAAACATTGCAATTT 59.706 36.000 9.83 0.00 38.10 1.82
170 171 5.879223 TGAGGTTGACAAACATTGCAATTTT 59.121 32.000 9.83 7.16 38.10 1.82
171 172 6.036953 TGAGGTTGACAAACATTGCAATTTTC 59.963 34.615 9.83 0.00 38.10 2.29
172 173 6.114767 AGGTTGACAAACATTGCAATTTTCT 58.885 32.000 9.83 2.33 38.10 2.52
173 174 7.271511 AGGTTGACAAACATTGCAATTTTCTA 58.728 30.769 9.83 0.00 38.10 2.10
174 175 7.768120 AGGTTGACAAACATTGCAATTTTCTAA 59.232 29.630 9.83 1.51 38.10 2.10
175 176 8.394121 GGTTGACAAACATTGCAATTTTCTAAA 58.606 29.630 9.83 1.04 38.10 1.85
176 177 9.934190 GTTGACAAACATTGCAATTTTCTAAAT 57.066 25.926 9.83 0.00 36.24 1.40
202 203 5.675684 AAAATGAACTGGGACAAAGTTGT 57.324 34.783 0.00 0.00 45.65 3.32
234 235 1.779569 ACTAAAGTTGTCACCTCGCG 58.220 50.000 0.00 0.00 0.00 5.87
235 236 1.068127 ACTAAAGTTGTCACCTCGCGT 59.932 47.619 5.77 0.00 0.00 6.01
236 237 1.719780 CTAAAGTTGTCACCTCGCGTC 59.280 52.381 5.77 0.00 0.00 5.19
237 238 0.179094 AAAGTTGTCACCTCGCGTCA 60.179 50.000 5.77 0.00 0.00 4.35
238 239 0.179094 AAGTTGTCACCTCGCGTCAA 60.179 50.000 5.77 1.05 0.00 3.18
239 240 0.874607 AGTTGTCACCTCGCGTCAAC 60.875 55.000 5.77 12.63 38.69 3.18
240 241 0.874607 GTTGTCACCTCGCGTCAACT 60.875 55.000 5.77 0.00 36.49 3.16
241 242 0.669619 TTGTCACCTCGCGTCAACTA 59.330 50.000 5.77 0.00 0.00 2.24
242 243 0.669619 TGTCACCTCGCGTCAACTAA 59.330 50.000 5.77 0.00 0.00 2.24
243 244 1.067364 TGTCACCTCGCGTCAACTAAA 59.933 47.619 5.77 0.00 0.00 1.85
244 245 1.719780 GTCACCTCGCGTCAACTAAAG 59.280 52.381 5.77 0.00 0.00 1.85
245 246 1.338973 TCACCTCGCGTCAACTAAAGT 59.661 47.619 5.77 0.00 0.00 2.66
246 247 2.132762 CACCTCGCGTCAACTAAAGTT 58.867 47.619 5.77 0.00 39.12 2.66
261 262 7.457024 AACTAAAGTTGCCATATAAAACCGT 57.543 32.000 0.00 0.00 36.80 4.83
262 263 7.457024 ACTAAAGTTGCCATATAAAACCGTT 57.543 32.000 0.00 0.00 0.00 4.44
263 264 7.532571 ACTAAAGTTGCCATATAAAACCGTTC 58.467 34.615 0.00 0.00 0.00 3.95
264 265 4.609691 AGTTGCCATATAAAACCGTTCG 57.390 40.909 0.00 0.00 0.00 3.95
265 266 3.375922 AGTTGCCATATAAAACCGTTCGG 59.624 43.478 9.81 9.81 0.00 4.30
266 267 2.290464 TGCCATATAAAACCGTTCGGG 58.710 47.619 15.66 0.00 43.62 5.14
267 268 2.093075 TGCCATATAAAACCGTTCGGGA 60.093 45.455 15.66 0.00 39.97 5.14
268 269 3.143728 GCCATATAAAACCGTTCGGGAT 58.856 45.455 15.66 5.96 39.97 3.85
269 270 3.058501 GCCATATAAAACCGTTCGGGATG 60.059 47.826 15.66 8.30 39.97 3.51
270 271 4.382291 CCATATAAAACCGTTCGGGATGA 58.618 43.478 15.66 0.00 39.97 2.92
271 272 4.817464 CCATATAAAACCGTTCGGGATGAA 59.183 41.667 15.66 0.00 39.97 2.57
272 273 5.297278 CCATATAAAACCGTTCGGGATGAAA 59.703 40.000 15.66 0.00 38.60 2.69
273 274 6.016610 CCATATAAAACCGTTCGGGATGAAAT 60.017 38.462 15.66 4.30 38.60 2.17
274 275 3.569250 AAAACCGTTCGGGATGAAATG 57.431 42.857 15.66 0.00 38.60 2.32
275 276 0.808755 AACCGTTCGGGATGAAATGC 59.191 50.000 15.66 0.00 38.60 3.56
276 277 0.035439 ACCGTTCGGGATGAAATGCT 60.035 50.000 15.66 0.00 38.60 3.79
277 278 1.094785 CCGTTCGGGATGAAATGCTT 58.905 50.000 3.04 0.00 38.60 3.91
278 279 1.202177 CCGTTCGGGATGAAATGCTTG 60.202 52.381 3.04 0.00 38.60 4.01
279 280 1.737236 CGTTCGGGATGAAATGCTTGA 59.263 47.619 0.00 0.00 38.60 3.02
280 281 2.161410 CGTTCGGGATGAAATGCTTGAA 59.839 45.455 0.00 0.00 38.60 2.69
281 282 3.365868 CGTTCGGGATGAAATGCTTGAAA 60.366 43.478 0.00 0.00 38.60 2.69
282 283 4.675146 CGTTCGGGATGAAATGCTTGAAAT 60.675 41.667 0.00 0.00 38.60 2.17
283 284 4.637483 TCGGGATGAAATGCTTGAAATC 57.363 40.909 0.00 0.00 33.81 2.17
284 285 3.381272 TCGGGATGAAATGCTTGAAATCC 59.619 43.478 0.00 0.00 33.81 3.01
285 286 3.130869 CGGGATGAAATGCTTGAAATCCA 59.869 43.478 9.50 0.00 36.17 3.41
286 287 4.381825 CGGGATGAAATGCTTGAAATCCAA 60.382 41.667 9.50 0.00 36.17 3.53
287 288 5.490159 GGGATGAAATGCTTGAAATCCAAA 58.510 37.500 9.50 0.00 36.17 3.28
288 289 5.352293 GGGATGAAATGCTTGAAATCCAAAC 59.648 40.000 9.50 0.00 36.17 2.93
289 290 5.062558 GGATGAAATGCTTGAAATCCAAACG 59.937 40.000 0.00 0.00 34.87 3.60
290 291 4.942852 TGAAATGCTTGAAATCCAAACGT 58.057 34.783 0.00 0.00 33.76 3.99
291 292 5.355596 TGAAATGCTTGAAATCCAAACGTT 58.644 33.333 0.00 0.00 32.98 3.99
292 293 5.461737 TGAAATGCTTGAAATCCAAACGTTC 59.538 36.000 0.00 0.00 31.04 3.95
293 294 2.993545 TGCTTGAAATCCAAACGTTCG 58.006 42.857 0.00 0.00 33.76 3.95
294 295 2.287308 TGCTTGAAATCCAAACGTTCGG 60.287 45.455 0.00 0.00 33.76 4.30
295 296 2.031508 GCTTGAAATCCAAACGTTCGGA 60.032 45.455 11.04 11.04 33.76 4.55
296 297 3.365969 GCTTGAAATCCAAACGTTCGGAT 60.366 43.478 15.15 15.15 44.09 4.18
303 304 4.587211 TCCAAACGTTCGGATTTTATCG 57.413 40.909 3.17 0.00 0.00 2.92
304 305 3.371591 TCCAAACGTTCGGATTTTATCGG 59.628 43.478 3.17 0.00 0.00 4.18
305 306 3.486209 CCAAACGTTCGGATTTTATCGGG 60.486 47.826 0.00 0.00 0.00 5.14
306 307 1.944032 ACGTTCGGATTTTATCGGGG 58.056 50.000 0.00 0.00 0.00 5.73
348 350 2.288825 GCTTAGCCTTTGGGTTGGTTTC 60.289 50.000 0.00 0.00 34.28 2.78
349 351 3.230976 CTTAGCCTTTGGGTTGGTTTCT 58.769 45.455 0.00 0.00 34.28 2.52
418 423 2.036475 CGAGATCCCGGAATCAAGACAT 59.964 50.000 2.56 0.00 0.00 3.06
419 424 3.493350 CGAGATCCCGGAATCAAGACATT 60.493 47.826 2.56 0.00 0.00 2.71
448 457 2.165030 CTCTTGTTTTAGCCATGGCCTG 59.835 50.000 33.14 13.68 43.17 4.85
462 471 4.424566 CCTGGCATGGCAACGCAC 62.425 66.667 23.47 4.69 42.51 5.34
464 473 3.620300 CTGGCATGGCAACGCACTG 62.620 63.158 23.47 5.71 42.51 3.66
466 475 2.703798 GGCATGGCAACGCACTGAT 61.704 57.895 15.47 0.00 42.51 2.90
467 476 1.213537 GCATGGCAACGCACTGATT 59.786 52.632 7.33 0.00 42.51 2.57
468 477 0.451383 GCATGGCAACGCACTGATTA 59.549 50.000 7.33 0.00 42.51 1.75
469 478 1.795162 GCATGGCAACGCACTGATTAC 60.795 52.381 7.33 0.00 42.51 1.89
470 479 1.739466 CATGGCAACGCACTGATTACT 59.261 47.619 0.00 0.00 42.51 2.24
472 481 2.226330 TGGCAACGCACTGATTACTTT 58.774 42.857 0.00 0.00 42.51 2.66
473 482 2.225491 TGGCAACGCACTGATTACTTTC 59.775 45.455 0.00 0.00 42.51 2.62
474 483 2.225491 GGCAACGCACTGATTACTTTCA 59.775 45.455 0.00 0.00 0.00 2.69
478 493 4.928661 ACGCACTGATTACTTTCATCAC 57.071 40.909 0.00 0.00 0.00 3.06
501 516 4.465660 CCGGATCATATCTCCTTGATCACT 59.534 45.833 13.21 0.00 46.52 3.41
516 531 6.149142 CCTTGATCACTGGAGAAGAAGAAAAG 59.851 42.308 7.93 0.00 0.00 2.27
517 532 4.999950 TGATCACTGGAGAAGAAGAAAAGC 59.000 41.667 0.00 0.00 0.00 3.51
518 533 4.422073 TCACTGGAGAAGAAGAAAAGCA 57.578 40.909 0.00 0.00 0.00 3.91
519 534 4.978099 TCACTGGAGAAGAAGAAAAGCAT 58.022 39.130 0.00 0.00 0.00 3.79
520 535 4.758674 TCACTGGAGAAGAAGAAAAGCATG 59.241 41.667 0.00 0.00 0.00 4.06
523 538 3.087781 GGAGAAGAAGAAAAGCATGCCT 58.912 45.455 15.66 0.00 0.00 4.75
524 539 4.263462 TGGAGAAGAAGAAAAGCATGCCTA 60.263 41.667 15.66 0.00 0.00 3.93
525 540 4.886489 GGAGAAGAAGAAAAGCATGCCTAT 59.114 41.667 15.66 0.00 0.00 2.57
526 541 5.359292 GGAGAAGAAGAAAAGCATGCCTATT 59.641 40.000 15.66 7.02 0.00 1.73
527 542 6.448207 AGAAGAAGAAAAGCATGCCTATTC 57.552 37.500 15.66 15.85 0.00 1.75
528 543 5.948162 AGAAGAAGAAAAGCATGCCTATTCA 59.052 36.000 22.22 0.00 0.00 2.57
529 544 5.831702 AGAAGAAAAGCATGCCTATTCAG 57.168 39.130 22.22 0.00 0.00 3.02
530 545 4.643784 AGAAGAAAAGCATGCCTATTCAGG 59.356 41.667 22.22 0.00 45.77 3.86
566 581 6.627671 GCCGAAATTAACGTCACATTATCTTC 59.372 38.462 0.00 0.00 0.00 2.87
569 584 5.652744 ATTAACGTCACATTATCTTCGCC 57.347 39.130 0.00 0.00 0.00 5.54
570 585 1.556564 ACGTCACATTATCTTCGCCG 58.443 50.000 0.00 0.00 0.00 6.46
571 586 1.133598 ACGTCACATTATCTTCGCCGA 59.866 47.619 0.00 0.00 0.00 5.54
572 587 1.517276 CGTCACATTATCTTCGCCGAC 59.483 52.381 0.00 0.00 0.00 4.79
573 588 1.517276 GTCACATTATCTTCGCCGACG 59.483 52.381 0.00 0.00 42.01 5.12
574 589 0.852777 CACATTATCTTCGCCGACGG 59.147 55.000 10.29 10.29 40.63 4.79
575 590 0.874607 ACATTATCTTCGCCGACGGC 60.875 55.000 29.10 29.10 46.75 5.68
597 612 1.187715 CCGCAATCAAATTAACGCCG 58.812 50.000 0.00 0.00 0.00 6.46
599 614 1.466697 CGCAATCAAATTAACGCCGGT 60.467 47.619 1.90 0.00 0.00 5.28
656 672 3.653009 CACAGCGCACCACACCAG 61.653 66.667 11.47 0.00 0.00 4.00
664 680 1.444119 GCACCACACCAGCGAAGAAA 61.444 55.000 0.00 0.00 0.00 2.52
665 681 0.307760 CACCACACCAGCGAAGAAAC 59.692 55.000 0.00 0.00 0.00 2.78
673 691 1.599797 AGCGAAGAAACCCCAACGG 60.600 57.895 0.00 0.00 37.81 4.44
707 725 1.664016 GCGTTGACAGCCAATCAAGTG 60.664 52.381 0.00 0.00 36.76 3.16
791 809 0.681243 GGAGCGATTCAAAAGCCCCT 60.681 55.000 0.00 0.00 0.00 4.79
793 811 0.681243 AGCGATTCAAAAGCCCCTCC 60.681 55.000 0.00 0.00 0.00 4.30
797 815 0.541764 ATTCAAAAGCCCCTCCGCAA 60.542 50.000 0.00 0.00 0.00 4.85
799 817 1.178534 TCAAAAGCCCCTCCGCAAAG 61.179 55.000 0.00 0.00 0.00 2.77
970 998 1.673808 CTCCTCCGACTAAACCCCCG 61.674 65.000 0.00 0.00 0.00 5.73
971 999 2.186125 CTCCGACTAAACCCCCGC 59.814 66.667 0.00 0.00 0.00 6.13
973 1001 2.125269 CCGACTAAACCCCCGCAG 60.125 66.667 0.00 0.00 0.00 5.18
974 1002 2.818274 CGACTAAACCCCCGCAGC 60.818 66.667 0.00 0.00 0.00 5.25
975 1003 2.437895 GACTAAACCCCCGCAGCC 60.438 66.667 0.00 0.00 0.00 4.85
978 1006 3.001994 TAAACCCCCGCAGCCGTA 61.002 61.111 0.00 0.00 0.00 4.02
1301 1742 3.327404 TTCCCCGCCAACTCCTCC 61.327 66.667 0.00 0.00 0.00 4.30
1302 1743 3.864983 TTCCCCGCCAACTCCTCCT 62.865 63.158 0.00 0.00 0.00 3.69
1303 1744 3.787001 CCCCGCCAACTCCTCCTC 61.787 72.222 0.00 0.00 0.00 3.71
1304 1745 3.787001 CCCGCCAACTCCTCCTCC 61.787 72.222 0.00 0.00 0.00 4.30
1305 1746 2.685380 CCGCCAACTCCTCCTCCT 60.685 66.667 0.00 0.00 0.00 3.69
1306 1747 2.294078 CCGCCAACTCCTCCTCCTT 61.294 63.158 0.00 0.00 0.00 3.36
1439 1889 4.514577 CCTCGCGAGCAATCCGGT 62.515 66.667 30.49 0.00 0.00 5.28
1441 1891 4.812476 TCGCGAGCAATCCGGTGG 62.812 66.667 3.71 0.00 0.00 4.61
1467 1917 0.391130 CAATTCGGGAGGAGTTCGCA 60.391 55.000 0.00 0.00 38.60 5.10
1599 2055 3.335534 GCGTTCGCACCGACAACT 61.336 61.111 12.33 0.00 34.89 3.16
1718 2174 1.031571 CCGCTGCTGCTCCCAATAAA 61.032 55.000 14.03 0.00 36.97 1.40
1729 2185 3.885901 GCTCCCAATAAATCCTCAGGAAC 59.114 47.826 0.00 0.00 34.34 3.62
1749 2205 2.047465 CAGCTGCTGAGGCGAAGT 60.047 61.111 24.88 0.00 42.25 3.01
1813 2269 0.465705 CAAGGCGCTCCTCCTATTCA 59.534 55.000 7.64 0.00 43.40 2.57
2001 2457 3.469863 GATTCGGCGGCCCACCATA 62.470 63.158 14.55 0.00 34.57 2.74
2014 2470 1.945394 CCACCATAATCAGCAGCAGAC 59.055 52.381 0.00 0.00 0.00 3.51
2095 2551 0.888285 GCCACTGCTGCTTCTCAAGT 60.888 55.000 0.00 0.00 33.53 3.16
2258 2714 1.202417 AGATGCGACATGTTCTACGGG 60.202 52.381 0.00 0.00 0.00 5.28
2456 2912 5.286797 CAGTTTGTGTGTGTGAATTCAGTTG 59.713 40.000 8.80 0.00 0.00 3.16
2457 2913 3.419264 TGTGTGTGTGAATTCAGTTGC 57.581 42.857 8.80 0.00 0.00 4.17
2468 2924 5.284660 GTGAATTCAGTTGCTTCTTTATGCG 59.715 40.000 8.80 0.00 0.00 4.73
2486 2942 3.925379 TGCGTGACAGATTCAGTTATGT 58.075 40.909 0.00 0.00 33.71 2.29
2487 2943 3.926527 TGCGTGACAGATTCAGTTATGTC 59.073 43.478 0.00 0.00 41.89 3.06
2559 3015 2.607750 AGAGGCTGCGGGGAAAGA 60.608 61.111 0.00 0.00 0.00 2.52
2561 3017 3.689002 GAGGCTGCGGGGAAAGAGG 62.689 68.421 0.00 0.00 0.00 3.69
2639 3095 6.095160 GCATCTTGAGGAATTCTGTGAAAGAT 59.905 38.462 5.23 10.01 33.93 2.40
2715 3171 6.320518 TCCTACTCTTTCCTCTTTCAGGTTA 58.679 40.000 0.00 0.00 43.95 2.85
2722 3178 6.497259 TCTTTCCTCTTTCAGGTTAGCTTCTA 59.503 38.462 0.00 0.00 43.95 2.10
2759 3217 4.734398 TTTGCTGCTTTCCTTCAAAGAA 57.266 36.364 0.00 0.00 44.02 2.52
2792 3250 5.125097 AGCTTGTTTCAGCATTTAGGATGAG 59.875 40.000 0.00 0.00 42.84 2.90
2820 3278 1.785353 TTAGAAAGCGGTTGCCCCCT 61.785 55.000 0.00 0.00 44.31 4.79
2824 3282 1.858739 AAAGCGGTTGCCCCCTGATA 61.859 55.000 0.00 0.00 44.31 2.15
2924 3382 6.001460 CCCCGAAACATAATTAGATAGCCAA 58.999 40.000 0.00 0.00 0.00 4.52
2931 3389 7.880160 ACATAATTAGATAGCCAAAACAGCA 57.120 32.000 0.00 0.00 0.00 4.41
2947 3405 3.142951 ACAGCAAACTACAATTACGGCA 58.857 40.909 0.00 0.00 0.00 5.69
2989 3447 1.304282 GCTGGCCTCCATCCTTTCA 59.696 57.895 3.32 0.00 30.82 2.69
3064 3525 4.751767 TCAGTTTGGTTGCCTCATTTTT 57.248 36.364 0.00 0.00 0.00 1.94
3118 3579 7.406553 TCAACTGACAAAGAAACATAACTTCG 58.593 34.615 0.00 0.00 0.00 3.79
3141 3602 2.304470 TGGGATACACTACTGCTTTGCA 59.696 45.455 0.00 0.00 35.75 4.08
3195 3656 1.013596 CACCAGAACAGCGACACAAA 58.986 50.000 0.00 0.00 0.00 2.83
3231 3710 2.507407 AAACATTGCCCCGATACACT 57.493 45.000 0.00 0.00 0.00 3.55
3235 3714 2.290641 ACATTGCCCCGATACACTGAAA 60.291 45.455 0.00 0.00 0.00 2.69
3262 3741 5.819991 TCATCTCCAATTCTAGGCAAAGTT 58.180 37.500 0.00 0.00 0.00 2.66
3270 3749 6.376978 CAATTCTAGGCAAAGTTCTGAACAG 58.623 40.000 21.50 12.10 0.00 3.16
3286 3765 4.075682 TGAACAGAAACACACAGTTGGAA 58.924 39.130 0.00 0.00 41.19 3.53
3292 3771 7.781056 ACAGAAACACACAGTTGGAAATAATT 58.219 30.769 0.00 0.00 41.19 1.40
3293 3772 7.706179 ACAGAAACACACAGTTGGAAATAATTG 59.294 33.333 0.00 0.00 41.19 2.32
3296 3775 6.084326 ACACACAGTTGGAAATAATTGGTC 57.916 37.500 0.00 0.00 0.00 4.02
3312 3791 3.646611 TGGTCAATCGTTTAGTCGTGA 57.353 42.857 0.00 0.00 0.00 4.35
3314 3793 2.340577 GGTCAATCGTTTAGTCGTGACG 59.659 50.000 0.00 0.00 37.55 4.35
3331 3810 3.361053 GTGACGACAGAAATGACACGTAG 59.639 47.826 0.00 0.00 34.26 3.51
3370 3849 3.192001 TCTGTGAATCAGATTGCCTTTGC 59.808 43.478 0.00 0.00 46.77 3.68
3376 3855 4.877378 ATCAGATTGCCTTTGCTCAAAA 57.123 36.364 0.00 0.00 38.71 2.44
3378 3857 4.562082 TCAGATTGCCTTTGCTCAAAATG 58.438 39.130 0.00 0.00 38.71 2.32
3398 3877 1.156736 CTTTTCTGTACCACCAGCCG 58.843 55.000 0.00 0.00 32.32 5.52
3424 3903 9.133627 GCAAAAAGATCTTAATTCCTGAAGAAC 57.866 33.333 8.75 0.00 37.29 3.01
3727 4208 5.806286 TCAAAACAAACGAGATCAGAACAC 58.194 37.500 0.00 0.00 0.00 3.32
3755 4236 8.579850 TTGTCATGAAAATAGGAGCATTAACT 57.420 30.769 0.00 0.00 0.00 2.24
3756 4237 8.579850 TGTCATGAAAATAGGAGCATTAACTT 57.420 30.769 0.00 0.00 0.00 2.66
3788 4269 9.181805 CAATGAAGCAAATCATTATCAGATCAC 57.818 33.333 10.77 0.00 45.77 3.06
3982 4463 7.847096 TGCTATCTGAGGTTGTTTCAGTATTA 58.153 34.615 2.57 0.00 42.11 0.98
3983 4464 8.486210 TGCTATCTGAGGTTGTTTCAGTATTAT 58.514 33.333 2.57 0.00 42.11 1.28
4003 4484 4.913335 ATGGATGAAAGCTTATGTGCTG 57.087 40.909 0.00 0.00 43.24 4.41
4034 4516 7.292713 TGTTGTCTAGGACTACAATTGTACA 57.707 36.000 14.35 8.20 42.89 2.90
4205 4687 3.213506 CTGGTGGACACATGAGAAAACA 58.786 45.455 0.00 0.00 0.00 2.83
4384 4871 2.122167 CGCCTACCGGAGAGCTCTT 61.122 63.158 19.36 4.03 30.72 2.85
4514 5001 6.672266 TCTCATCTCCTACAAGTTCAGTTT 57.328 37.500 0.00 0.00 0.00 2.66
4545 5032 5.748630 TCATATCGTTATCACAGCAACTGAC 59.251 40.000 0.78 0.00 35.18 3.51
4635 5122 3.500680 GGAAACTGAGCCGATAACAAACA 59.499 43.478 0.00 0.00 0.00 2.83
4637 5124 4.749245 AACTGAGCCGATAACAAACAAG 57.251 40.909 0.00 0.00 0.00 3.16
4789 5276 1.208614 GCAAGCAGAAGTTGAGCGG 59.791 57.895 0.00 0.00 0.00 5.52
4955 5442 5.745312 ATCACTTGTTCCTGTACATGAGA 57.255 39.130 0.00 0.00 31.24 3.27
5042 5530 2.397044 AGGGTTTTGGAATCCTTGCA 57.603 45.000 0.00 0.00 44.16 4.08
5043 5531 2.906568 AGGGTTTTGGAATCCTTGCAT 58.093 42.857 0.00 0.00 44.16 3.96
5071 5559 8.338072 GCATAGAGTAAACTAGGCAGTCTATA 57.662 38.462 13.34 1.55 45.48 1.31
5072 5560 8.962679 GCATAGAGTAAACTAGGCAGTCTATAT 58.037 37.037 13.34 3.24 45.48 0.86
5205 5693 5.884232 ACTGCATCAGAAATTCAGAATAGCA 59.116 36.000 10.93 10.93 35.18 3.49
5210 5698 8.400947 GCATCAGAAATTCAGAATAGCACTTTA 58.599 33.333 0.00 0.00 0.00 1.85
5376 5864 1.814394 TGCTGTGCATCCTGATTTCAC 59.186 47.619 0.00 3.57 31.71 3.18
5381 5869 3.076621 GTGCATCCTGATTTCACTGTCA 58.923 45.455 0.00 0.00 0.00 3.58
5412 5900 2.884639 TCTTGTTAAGCCTGTTCCTTGC 59.115 45.455 0.00 0.00 0.00 4.01
5457 5945 6.071108 GCTGATTCTGAAGCCTAGATATACCA 60.071 42.308 2.88 0.00 33.12 3.25
5593 6094 6.469782 CCAATGGGTGCTAAAATCAAGTAT 57.530 37.500 0.00 0.00 0.00 2.12
5594 6095 7.581213 CCAATGGGTGCTAAAATCAAGTATA 57.419 36.000 0.00 0.00 0.00 1.47
5595 6096 7.651808 CCAATGGGTGCTAAAATCAAGTATAG 58.348 38.462 0.00 0.00 0.00 1.31
5692 6351 2.029073 AACTGACGCTCCACCACG 59.971 61.111 0.00 0.00 0.00 4.94
5749 6426 4.568072 TGCCTGAAGTTATCTTGCCTAA 57.432 40.909 0.00 0.00 33.64 2.69
5786 6467 1.234821 GCTGAACAAATCACCGGACA 58.765 50.000 9.46 0.00 33.47 4.02
5927 6630 3.226777 TCCCTGAGCAGAGCTAAGATAC 58.773 50.000 4.92 0.00 39.42 2.24
5946 6649 0.310854 CACCGAAAAACTGTGGAGCC 59.689 55.000 0.00 0.00 31.64 4.70
5955 6658 1.826385 ACTGTGGAGCCATAAACAGC 58.174 50.000 1.73 0.00 43.04 4.40
5961 6664 2.025037 TGGAGCCATAAACAGCCAGATT 60.025 45.455 0.00 0.00 0.00 2.40
5967 6670 4.734695 GCCATAAACAGCCAGATTAAGTGC 60.735 45.833 0.00 0.00 0.00 4.40
6017 6725 6.773638 AGTGGAAACAGTCAGATCAAGTAAT 58.226 36.000 0.00 0.00 41.12 1.89
6019 6727 7.173907 AGTGGAAACAGTCAGATCAAGTAATTG 59.826 37.037 0.00 0.00 41.12 2.32
6021 6729 7.884877 TGGAAACAGTCAGATCAAGTAATTGAT 59.115 33.333 17.73 17.73 39.01 2.57
6022 6730 8.180267 GGAAACAGTCAGATCAAGTAATTGATG 58.820 37.037 22.13 11.15 41.38 3.07
6023 6731 8.853077 AAACAGTCAGATCAAGTAATTGATGA 57.147 30.769 22.13 13.24 41.38 2.92
6024 6732 7.840342 ACAGTCAGATCAAGTAATTGATGAC 57.160 36.000 22.13 22.53 41.38 3.06
6025 6733 7.619050 ACAGTCAGATCAAGTAATTGATGACT 58.381 34.615 25.42 25.42 45.11 3.41
6026 6734 8.099537 ACAGTCAGATCAAGTAATTGATGACTT 58.900 33.333 27.24 19.49 43.34 3.01
6033 6741 5.942872 CAAGTAATTGATGACTTGTCCCAC 58.057 41.667 11.53 0.00 44.90 4.61
6065 6774 0.514691 GTGAGCCAGTTCGCTTTGAG 59.485 55.000 0.00 0.00 39.87 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.517952 TTGCACGGTCATCATTGAAAAT 57.482 36.364 0.00 0.00 32.48 1.82
1 2 3.998099 TTGCACGGTCATCATTGAAAA 57.002 38.095 0.00 0.00 32.48 2.29
2 3 3.567585 TCTTTGCACGGTCATCATTGAAA 59.432 39.130 0.00 0.00 32.48 2.69
3 4 3.145286 TCTTTGCACGGTCATCATTGAA 58.855 40.909 0.00 0.00 32.48 2.69
4 5 2.777094 TCTTTGCACGGTCATCATTGA 58.223 42.857 0.00 0.00 0.00 2.57
5 6 3.557577 TTCTTTGCACGGTCATCATTG 57.442 42.857 0.00 0.00 0.00 2.82
6 7 3.758023 TCATTCTTTGCACGGTCATCATT 59.242 39.130 0.00 0.00 0.00 2.57
7 8 3.127548 GTCATTCTTTGCACGGTCATCAT 59.872 43.478 0.00 0.00 0.00 2.45
8 9 2.483877 GTCATTCTTTGCACGGTCATCA 59.516 45.455 0.00 0.00 0.00 3.07
9 10 2.483877 TGTCATTCTTTGCACGGTCATC 59.516 45.455 0.00 0.00 0.00 2.92
10 11 2.485426 CTGTCATTCTTTGCACGGTCAT 59.515 45.455 0.00 0.00 0.00 3.06
11 12 1.872952 CTGTCATTCTTTGCACGGTCA 59.127 47.619 0.00 0.00 0.00 4.02
12 13 2.143122 TCTGTCATTCTTTGCACGGTC 58.857 47.619 0.00 0.00 0.00 4.79
13 14 2.146342 CTCTGTCATTCTTTGCACGGT 58.854 47.619 0.00 0.00 0.00 4.83
14 15 2.416747 TCTCTGTCATTCTTTGCACGG 58.583 47.619 0.00 0.00 0.00 4.94
15 16 5.784750 TTATCTCTGTCATTCTTTGCACG 57.215 39.130 0.00 0.00 0.00 5.34
46 47 8.889717 CGTTTTGTATAGGAAGGACACAATTAT 58.110 33.333 0.00 0.00 0.00 1.28
47 48 7.334921 CCGTTTTGTATAGGAAGGACACAATTA 59.665 37.037 0.00 0.00 0.00 1.40
48 49 6.150474 CCGTTTTGTATAGGAAGGACACAATT 59.850 38.462 0.00 0.00 0.00 2.32
49 50 5.646360 CCGTTTTGTATAGGAAGGACACAAT 59.354 40.000 0.00 0.00 0.00 2.71
50 51 4.998672 CCGTTTTGTATAGGAAGGACACAA 59.001 41.667 0.00 0.00 0.00 3.33
51 52 4.571919 CCGTTTTGTATAGGAAGGACACA 58.428 43.478 0.00 0.00 0.00 3.72
52 53 3.373130 GCCGTTTTGTATAGGAAGGACAC 59.627 47.826 0.00 0.00 0.00 3.67
53 54 3.008157 TGCCGTTTTGTATAGGAAGGACA 59.992 43.478 0.00 0.00 0.00 4.02
54 55 3.602483 TGCCGTTTTGTATAGGAAGGAC 58.398 45.455 0.00 0.00 0.00 3.85
55 56 3.985019 TGCCGTTTTGTATAGGAAGGA 57.015 42.857 0.00 0.00 0.00 3.36
56 57 4.638421 TCATTGCCGTTTTGTATAGGAAGG 59.362 41.667 0.00 0.00 0.00 3.46
57 58 5.811399 TCATTGCCGTTTTGTATAGGAAG 57.189 39.130 0.00 0.00 0.00 3.46
58 59 7.867305 TTATCATTGCCGTTTTGTATAGGAA 57.133 32.000 0.00 0.00 0.00 3.36
59 60 7.201750 GGTTTATCATTGCCGTTTTGTATAGGA 60.202 37.037 0.00 0.00 0.00 2.94
60 61 6.915843 GGTTTATCATTGCCGTTTTGTATAGG 59.084 38.462 0.00 0.00 0.00 2.57
61 62 7.643764 CAGGTTTATCATTGCCGTTTTGTATAG 59.356 37.037 0.00 0.00 0.00 1.31
62 63 7.337184 TCAGGTTTATCATTGCCGTTTTGTATA 59.663 33.333 0.00 0.00 0.00 1.47
63 64 6.151985 TCAGGTTTATCATTGCCGTTTTGTAT 59.848 34.615 0.00 0.00 0.00 2.29
64 65 5.473846 TCAGGTTTATCATTGCCGTTTTGTA 59.526 36.000 0.00 0.00 0.00 2.41
65 66 4.279671 TCAGGTTTATCATTGCCGTTTTGT 59.720 37.500 0.00 0.00 0.00 2.83
66 67 4.804108 TCAGGTTTATCATTGCCGTTTTG 58.196 39.130 0.00 0.00 0.00 2.44
67 68 5.221342 TGTTCAGGTTTATCATTGCCGTTTT 60.221 36.000 0.00 0.00 0.00 2.43
68 69 4.279671 TGTTCAGGTTTATCATTGCCGTTT 59.720 37.500 0.00 0.00 0.00 3.60
69 70 3.823873 TGTTCAGGTTTATCATTGCCGTT 59.176 39.130 0.00 0.00 0.00 4.44
70 71 3.417101 TGTTCAGGTTTATCATTGCCGT 58.583 40.909 0.00 0.00 0.00 5.68
71 72 4.637483 ATGTTCAGGTTTATCATTGCCG 57.363 40.909 0.00 0.00 0.00 5.69
72 73 5.036737 CGAATGTTCAGGTTTATCATTGCC 58.963 41.667 0.00 0.00 0.00 4.52
73 74 5.036737 CCGAATGTTCAGGTTTATCATTGC 58.963 41.667 0.00 0.00 0.00 3.56
74 75 6.435430 TCCGAATGTTCAGGTTTATCATTG 57.565 37.500 0.00 0.00 0.00 2.82
75 76 7.645058 AATCCGAATGTTCAGGTTTATCATT 57.355 32.000 0.00 0.00 0.00 2.57
76 77 7.645058 AAATCCGAATGTTCAGGTTTATCAT 57.355 32.000 0.00 0.00 0.00 2.45
77 78 7.461182 AAAATCCGAATGTTCAGGTTTATCA 57.539 32.000 0.00 0.00 0.00 2.15
82 83 9.801873 CATAATTAAAATCCGAATGTTCAGGTT 57.198 29.630 0.00 0.00 0.00 3.50
83 84 8.413229 CCATAATTAAAATCCGAATGTTCAGGT 58.587 33.333 0.00 0.00 0.00 4.00
84 85 7.382218 GCCATAATTAAAATCCGAATGTTCAGG 59.618 37.037 0.00 0.00 0.00 3.86
85 86 7.920151 TGCCATAATTAAAATCCGAATGTTCAG 59.080 33.333 0.00 0.00 0.00 3.02
86 87 7.776107 TGCCATAATTAAAATCCGAATGTTCA 58.224 30.769 0.00 0.00 0.00 3.18
87 88 8.539674 GTTGCCATAATTAAAATCCGAATGTTC 58.460 33.333 0.00 0.00 0.00 3.18
88 89 7.494298 GGTTGCCATAATTAAAATCCGAATGTT 59.506 33.333 0.00 0.00 0.00 2.71
89 90 6.983890 GGTTGCCATAATTAAAATCCGAATGT 59.016 34.615 0.00 0.00 0.00 2.71
90 91 7.169645 CAGGTTGCCATAATTAAAATCCGAATG 59.830 37.037 0.00 0.00 0.00 2.67
91 92 7.069331 TCAGGTTGCCATAATTAAAATCCGAAT 59.931 33.333 0.00 0.00 0.00 3.34
92 93 6.378564 TCAGGTTGCCATAATTAAAATCCGAA 59.621 34.615 0.00 0.00 0.00 4.30
93 94 5.888724 TCAGGTTGCCATAATTAAAATCCGA 59.111 36.000 0.00 0.00 0.00 4.55
94 95 6.142818 TCAGGTTGCCATAATTAAAATCCG 57.857 37.500 0.00 0.00 0.00 4.18
95 96 7.986889 ACATTCAGGTTGCCATAATTAAAATCC 59.013 33.333 0.00 0.00 0.00 3.01
96 97 8.947055 ACATTCAGGTTGCCATAATTAAAATC 57.053 30.769 0.00 0.00 0.00 2.17
97 98 9.737844 AAACATTCAGGTTGCCATAATTAAAAT 57.262 25.926 0.00 0.00 0.00 1.82
98 99 9.566432 AAAACATTCAGGTTGCCATAATTAAAA 57.434 25.926 0.00 0.00 0.00 1.52
99 100 9.566432 AAAAACATTCAGGTTGCCATAATTAAA 57.434 25.926 0.00 0.00 0.00 1.52
123 124 9.658475 CTCACGTGAACTAAAATTGACATAAAA 57.342 29.630 20.49 0.00 0.00 1.52
124 125 8.286800 CCTCACGTGAACTAAAATTGACATAAA 58.713 33.333 20.49 0.00 0.00 1.40
125 126 7.442969 ACCTCACGTGAACTAAAATTGACATAA 59.557 33.333 20.49 0.00 0.00 1.90
126 127 6.932400 ACCTCACGTGAACTAAAATTGACATA 59.068 34.615 20.49 0.00 0.00 2.29
127 128 5.763204 ACCTCACGTGAACTAAAATTGACAT 59.237 36.000 20.49 0.00 0.00 3.06
128 129 5.120399 ACCTCACGTGAACTAAAATTGACA 58.880 37.500 20.49 0.00 0.00 3.58
129 130 5.668558 ACCTCACGTGAACTAAAATTGAC 57.331 39.130 20.49 0.00 0.00 3.18
130 131 5.818336 TCAACCTCACGTGAACTAAAATTGA 59.182 36.000 20.49 16.28 0.00 2.57
131 132 5.907391 GTCAACCTCACGTGAACTAAAATTG 59.093 40.000 20.49 14.51 0.00 2.32
132 133 5.587043 TGTCAACCTCACGTGAACTAAAATT 59.413 36.000 20.49 3.54 0.00 1.82
133 134 5.120399 TGTCAACCTCACGTGAACTAAAAT 58.880 37.500 20.49 0.00 0.00 1.82
134 135 4.505808 TGTCAACCTCACGTGAACTAAAA 58.494 39.130 20.49 0.94 0.00 1.52
135 136 4.126208 TGTCAACCTCACGTGAACTAAA 57.874 40.909 20.49 2.61 0.00 1.85
136 137 3.804786 TGTCAACCTCACGTGAACTAA 57.195 42.857 20.49 1.48 0.00 2.24
137 138 3.804786 TTGTCAACCTCACGTGAACTA 57.195 42.857 20.49 8.45 0.00 2.24
138 139 2.676342 GTTTGTCAACCTCACGTGAACT 59.324 45.455 20.49 4.15 0.00 3.01
139 140 2.417239 TGTTTGTCAACCTCACGTGAAC 59.583 45.455 20.49 14.57 31.02 3.18
140 141 2.701107 TGTTTGTCAACCTCACGTGAA 58.299 42.857 20.49 0.47 31.02 3.18
141 142 2.388310 TGTTTGTCAACCTCACGTGA 57.612 45.000 18.88 18.88 31.02 4.35
142 143 3.362295 CAATGTTTGTCAACCTCACGTG 58.638 45.455 9.94 9.94 31.02 4.49
143 144 2.223479 GCAATGTTTGTCAACCTCACGT 60.223 45.455 0.00 0.00 31.02 4.49
144 145 2.223456 TGCAATGTTTGTCAACCTCACG 60.223 45.455 0.00 0.00 31.02 4.35
145 146 3.435105 TGCAATGTTTGTCAACCTCAC 57.565 42.857 0.00 0.00 31.02 3.51
146 147 4.669206 ATTGCAATGTTTGTCAACCTCA 57.331 36.364 12.09 0.00 32.47 3.86
147 148 5.989551 AAATTGCAATGTTTGTCAACCTC 57.010 34.783 13.82 0.00 32.47 3.85
148 149 6.114767 AGAAAATTGCAATGTTTGTCAACCT 58.885 32.000 15.98 4.23 32.47 3.50
149 150 6.362210 AGAAAATTGCAATGTTTGTCAACC 57.638 33.333 15.98 1.98 32.47 3.77
150 151 9.934190 ATTTAGAAAATTGCAATGTTTGTCAAC 57.066 25.926 15.98 2.67 32.47 3.18
179 180 6.048732 ACAACTTTGTCCCAGTTCATTTTT 57.951 33.333 0.00 0.00 36.50 1.94
180 181 5.675684 ACAACTTTGTCCCAGTTCATTTT 57.324 34.783 0.00 0.00 36.50 1.82
214 215 2.132762 CGCGAGGTGACAACTTTAGTT 58.867 47.619 0.00 0.00 39.12 2.24
215 216 1.068127 ACGCGAGGTGACAACTTTAGT 59.932 47.619 15.93 0.00 0.00 2.24
216 217 1.719780 GACGCGAGGTGACAACTTTAG 59.280 52.381 15.93 0.00 0.00 1.85
217 218 1.067364 TGACGCGAGGTGACAACTTTA 59.933 47.619 15.93 0.00 0.00 1.85
218 219 0.179094 TGACGCGAGGTGACAACTTT 60.179 50.000 15.93 0.00 0.00 2.66
219 220 0.179094 TTGACGCGAGGTGACAACTT 60.179 50.000 15.93 0.00 0.00 2.66
220 221 0.874607 GTTGACGCGAGGTGACAACT 60.875 55.000 15.93 0.00 42.13 3.16
221 222 0.874607 AGTTGACGCGAGGTGACAAC 60.875 55.000 15.93 17.18 44.26 3.32
222 223 0.669619 TAGTTGACGCGAGGTGACAA 59.330 50.000 15.93 6.33 0.00 3.18
223 224 0.669619 TTAGTTGACGCGAGGTGACA 59.330 50.000 15.93 0.00 0.00 3.58
224 225 1.719780 CTTTAGTTGACGCGAGGTGAC 59.280 52.381 15.93 3.83 0.00 3.67
225 226 1.338973 ACTTTAGTTGACGCGAGGTGA 59.661 47.619 15.93 0.00 0.00 4.02
226 227 1.779569 ACTTTAGTTGACGCGAGGTG 58.220 50.000 15.93 0.00 0.00 4.00
227 228 2.521105 AACTTTAGTTGACGCGAGGT 57.479 45.000 15.93 0.00 36.80 3.85
237 238 7.457024 ACGGTTTTATATGGCAACTTTAGTT 57.543 32.000 0.00 0.00 39.12 2.24
238 239 7.457024 AACGGTTTTATATGGCAACTTTAGT 57.543 32.000 0.00 0.00 37.61 2.24
239 240 6.685403 CGAACGGTTTTATATGGCAACTTTAG 59.315 38.462 0.00 0.00 37.61 1.85
240 241 6.403418 CCGAACGGTTTTATATGGCAACTTTA 60.403 38.462 4.99 0.00 37.61 1.85
241 242 5.395642 CGAACGGTTTTATATGGCAACTTT 58.604 37.500 0.00 0.00 37.61 2.66
242 243 4.142556 CCGAACGGTTTTATATGGCAACTT 60.143 41.667 4.99 0.00 37.61 2.66
243 244 3.375922 CCGAACGGTTTTATATGGCAACT 59.624 43.478 4.99 0.00 37.61 3.16
244 245 3.487879 CCCGAACGGTTTTATATGGCAAC 60.488 47.826 12.23 0.00 0.00 4.17
245 246 2.683867 CCCGAACGGTTTTATATGGCAA 59.316 45.455 12.23 0.00 0.00 4.52
246 247 2.093075 TCCCGAACGGTTTTATATGGCA 60.093 45.455 12.23 0.00 0.00 4.92
247 248 2.563702 TCCCGAACGGTTTTATATGGC 58.436 47.619 12.23 0.00 0.00 4.40
248 249 4.382291 TCATCCCGAACGGTTTTATATGG 58.618 43.478 12.23 0.00 0.00 2.74
249 250 5.994887 TTCATCCCGAACGGTTTTATATG 57.005 39.130 12.23 6.19 0.00 1.78
250 251 6.514376 GCATTTCATCCCGAACGGTTTTATAT 60.514 38.462 12.23 0.00 31.73 0.86
251 252 5.220892 GCATTTCATCCCGAACGGTTTTATA 60.221 40.000 12.23 0.00 31.73 0.98
252 253 4.439563 GCATTTCATCCCGAACGGTTTTAT 60.440 41.667 12.23 0.00 31.73 1.40
253 254 3.119779 GCATTTCATCCCGAACGGTTTTA 60.120 43.478 12.23 0.00 31.73 1.52
254 255 2.352323 GCATTTCATCCCGAACGGTTTT 60.352 45.455 12.23 0.00 31.73 2.43
255 256 1.201414 GCATTTCATCCCGAACGGTTT 59.799 47.619 12.23 0.00 31.73 3.27
256 257 0.808755 GCATTTCATCCCGAACGGTT 59.191 50.000 12.23 0.00 31.73 4.44
257 258 0.035439 AGCATTTCATCCCGAACGGT 60.035 50.000 12.23 0.00 31.73 4.83
258 259 1.094785 AAGCATTTCATCCCGAACGG 58.905 50.000 6.25 6.25 31.73 4.44
259 260 1.737236 TCAAGCATTTCATCCCGAACG 59.263 47.619 0.00 0.00 31.73 3.95
260 261 3.848272 TTCAAGCATTTCATCCCGAAC 57.152 42.857 0.00 0.00 31.73 3.95
261 262 4.142182 GGATTTCAAGCATTTCATCCCGAA 60.142 41.667 0.00 0.00 0.00 4.30
262 263 3.381272 GGATTTCAAGCATTTCATCCCGA 59.619 43.478 0.00 0.00 0.00 5.14
263 264 3.130869 TGGATTTCAAGCATTTCATCCCG 59.869 43.478 0.00 0.00 30.80 5.14
264 265 4.741321 TGGATTTCAAGCATTTCATCCC 57.259 40.909 0.00 0.00 30.80 3.85
265 266 5.062558 CGTTTGGATTTCAAGCATTTCATCC 59.937 40.000 0.00 0.00 36.54 3.51
266 267 5.634859 ACGTTTGGATTTCAAGCATTTCATC 59.365 36.000 0.00 0.00 36.54 2.92
267 268 5.540911 ACGTTTGGATTTCAAGCATTTCAT 58.459 33.333 0.00 0.00 36.54 2.57
268 269 4.942852 ACGTTTGGATTTCAAGCATTTCA 58.057 34.783 0.00 0.00 36.54 2.69
269 270 5.387342 CGAACGTTTGGATTTCAAGCATTTC 60.387 40.000 7.72 0.00 36.54 2.17
270 271 4.444056 CGAACGTTTGGATTTCAAGCATTT 59.556 37.500 7.72 0.00 36.54 2.32
271 272 3.980775 CGAACGTTTGGATTTCAAGCATT 59.019 39.130 7.72 0.00 36.54 3.56
272 273 3.564511 CGAACGTTTGGATTTCAAGCAT 58.435 40.909 7.72 0.00 36.54 3.79
273 274 2.287308 CCGAACGTTTGGATTTCAAGCA 60.287 45.455 27.84 0.00 36.54 3.91
274 275 2.031508 TCCGAACGTTTGGATTTCAAGC 60.032 45.455 29.83 0.00 35.80 4.01
275 276 3.889196 TCCGAACGTTTGGATTTCAAG 57.111 42.857 29.83 5.59 35.80 3.02
282 283 3.371591 CCGATAAAATCCGAACGTTTGGA 59.628 43.478 34.02 34.02 44.62 3.53
283 284 3.486209 CCCGATAAAATCCGAACGTTTGG 60.486 47.826 26.25 26.25 0.00 3.28
284 285 3.486209 CCCCGATAAAATCCGAACGTTTG 60.486 47.826 8.68 8.68 0.00 2.93
285 286 2.679336 CCCCGATAAAATCCGAACGTTT 59.321 45.455 0.46 0.00 0.00 3.60
286 287 2.282407 CCCCGATAAAATCCGAACGTT 58.718 47.619 0.00 0.00 0.00 3.99
287 288 1.207811 ACCCCGATAAAATCCGAACGT 59.792 47.619 0.00 0.00 0.00 3.99
288 289 1.862827 GACCCCGATAAAATCCGAACG 59.137 52.381 0.00 0.00 0.00 3.95
289 290 2.158856 AGGACCCCGATAAAATCCGAAC 60.159 50.000 0.00 0.00 34.46 3.95
290 291 2.121129 AGGACCCCGATAAAATCCGAA 58.879 47.619 0.00 0.00 34.46 4.30
291 292 1.797320 AGGACCCCGATAAAATCCGA 58.203 50.000 0.00 0.00 34.46 4.55
292 293 3.756933 TTAGGACCCCGATAAAATCCG 57.243 47.619 0.00 0.00 34.46 4.18
327 328 1.338107 AACCAACCCAAAGGCTAAGC 58.662 50.000 0.00 0.00 36.11 3.09
328 329 3.230976 AGAAACCAACCCAAAGGCTAAG 58.769 45.455 0.00 0.00 36.11 2.18
329 330 3.322191 AGAAACCAACCCAAAGGCTAA 57.678 42.857 0.00 0.00 36.11 3.09
331 332 2.174685 AAGAAACCAACCCAAAGGCT 57.825 45.000 0.00 0.00 36.11 4.58
332 333 3.275617 AAAAGAAACCAACCCAAAGGC 57.724 42.857 0.00 0.00 36.11 4.35
418 423 8.902806 CCATGGCTAAAACAAGAGTATATTCAA 58.097 33.333 0.00 0.00 0.00 2.69
419 424 7.013274 GCCATGGCTAAAACAAGAGTATATTCA 59.987 37.037 29.98 0.00 38.26 2.57
426 435 2.171003 GGCCATGGCTAAAACAAGAGT 58.829 47.619 34.70 0.00 41.60 3.24
448 457 2.216750 AATCAGTGCGTTGCCATGCC 62.217 55.000 0.00 0.00 33.44 4.40
455 464 5.082059 GTGATGAAAGTAATCAGTGCGTTG 58.918 41.667 0.00 0.00 34.78 4.10
458 467 3.242091 CGGTGATGAAAGTAATCAGTGCG 60.242 47.826 0.00 0.00 34.78 5.34
459 468 3.063997 CCGGTGATGAAAGTAATCAGTGC 59.936 47.826 0.00 0.00 34.78 4.40
460 469 4.503910 TCCGGTGATGAAAGTAATCAGTG 58.496 43.478 0.00 0.00 34.78 3.66
461 470 4.819105 TCCGGTGATGAAAGTAATCAGT 57.181 40.909 0.00 0.00 34.78 3.41
462 471 5.359756 TGATCCGGTGATGAAAGTAATCAG 58.640 41.667 0.00 0.00 34.78 2.90
464 473 8.037758 AGATATGATCCGGTGATGAAAGTAATC 58.962 37.037 0.00 0.00 0.00 1.75
466 475 7.303182 AGATATGATCCGGTGATGAAAGTAA 57.697 36.000 0.00 0.00 0.00 2.24
467 476 6.071334 GGAGATATGATCCGGTGATGAAAGTA 60.071 42.308 0.00 0.00 0.00 2.24
468 477 5.279708 GGAGATATGATCCGGTGATGAAAGT 60.280 44.000 0.00 0.00 0.00 2.66
469 478 5.046735 AGGAGATATGATCCGGTGATGAAAG 60.047 44.000 0.00 0.00 42.02 2.62
470 479 4.840680 AGGAGATATGATCCGGTGATGAAA 59.159 41.667 0.00 0.00 42.02 2.69
472 481 4.053009 AGGAGATATGATCCGGTGATGA 57.947 45.455 0.00 0.00 42.02 2.92
473 482 4.221482 TCAAGGAGATATGATCCGGTGATG 59.779 45.833 0.00 2.18 42.02 3.07
474 483 4.420206 TCAAGGAGATATGATCCGGTGAT 58.580 43.478 0.00 0.00 42.02 3.06
501 516 2.821969 GGCATGCTTTTCTTCTTCTCCA 59.178 45.455 18.92 0.00 0.00 3.86
523 538 1.437573 CCACGCTCTCGCCTGAATA 59.562 57.895 0.00 0.00 39.84 1.75
524 539 2.185350 CCACGCTCTCGCCTGAAT 59.815 61.111 0.00 0.00 39.84 2.57
525 540 4.742201 GCCACGCTCTCGCCTGAA 62.742 66.667 0.00 0.00 39.84 3.02
531 546 0.804544 TAATTTCGGCCACGCTCTCG 60.805 55.000 2.24 0.00 40.69 4.04
532 547 1.062148 GTTAATTTCGGCCACGCTCTC 59.938 52.381 2.24 0.00 40.69 3.20
573 588 2.344142 CGTTAATTTGATTGCGGTTGCC 59.656 45.455 0.00 0.00 41.78 4.52
574 589 2.222486 GCGTTAATTTGATTGCGGTTGC 60.222 45.455 0.00 0.00 43.20 4.17
575 590 2.344142 GGCGTTAATTTGATTGCGGTTG 59.656 45.455 0.00 0.00 0.00 3.77
576 591 2.601804 GGCGTTAATTTGATTGCGGTT 58.398 42.857 0.00 0.00 0.00 4.44
577 592 1.466697 CGGCGTTAATTTGATTGCGGT 60.467 47.619 0.00 0.00 0.00 5.68
578 593 1.187715 CGGCGTTAATTTGATTGCGG 58.812 50.000 0.00 0.00 0.00 5.69
579 594 1.187715 CCGGCGTTAATTTGATTGCG 58.812 50.000 6.01 0.00 0.00 4.85
580 595 1.917303 CACCGGCGTTAATTTGATTGC 59.083 47.619 6.01 0.00 0.00 3.56
597 612 1.079888 CTGAAATTTGGCCGCCACC 60.080 57.895 13.00 0.00 30.78 4.61
599 614 2.282039 CCCTGAAATTTGGCCGCCA 61.282 57.895 8.43 8.43 0.00 5.69
656 672 2.951458 CCGTTGGGGTTTCTTCGC 59.049 61.111 0.00 0.00 0.00 4.70
673 691 1.266718 TCAACGCAGCAAGTCAAATCC 59.733 47.619 0.00 0.00 0.00 3.01
707 725 2.351932 GCGATAATCTCTCGGGGAGTTC 60.352 54.545 4.52 0.00 42.40 3.01
776 794 1.993369 GCGGAGGGGCTTTTGAATCG 61.993 60.000 0.00 0.00 0.00 3.34
791 809 2.832129 ACTAACTGATCTCCTTTGCGGA 59.168 45.455 0.00 0.00 40.30 5.54
793 811 4.201628 CGAAACTAACTGATCTCCTTTGCG 60.202 45.833 0.00 0.00 0.00 4.85
797 815 4.382147 GGAGCGAAACTAACTGATCTCCTT 60.382 45.833 0.00 0.00 36.75 3.36
799 817 3.449632 GGAGCGAAACTAACTGATCTCC 58.550 50.000 0.00 0.00 33.09 3.71
810 828 2.032071 CGGGTTGGGAGCGAAACT 59.968 61.111 0.00 0.00 0.00 2.66
952 980 1.683365 CGGGGGTTTAGTCGGAGGA 60.683 63.158 0.00 0.00 0.00 3.71
955 983 2.604079 TGCGGGGGTTTAGTCGGA 60.604 61.111 0.00 0.00 0.00 4.55
956 984 2.125269 CTGCGGGGGTTTAGTCGG 60.125 66.667 0.00 0.00 0.00 4.79
958 986 2.437895 GGCTGCGGGGGTTTAGTC 60.438 66.667 0.00 0.00 0.00 2.59
959 987 4.404098 CGGCTGCGGGGGTTTAGT 62.404 66.667 0.00 0.00 0.00 2.24
1104 1545 2.903871 TAGATGCAGAGCCTGGCCCT 62.904 60.000 16.57 5.80 31.21 5.19
1443 1893 4.483243 TCCTCCCGAATTGCCGCC 62.483 66.667 0.00 0.00 0.00 6.13
1444 1894 2.897350 CTCCTCCCGAATTGCCGC 60.897 66.667 0.00 0.00 0.00 6.53
1583 2039 2.654912 GGAGTTGTCGGTGCGAACG 61.655 63.158 0.00 0.00 37.72 3.95
1715 2171 1.406887 GCTGCGGTTCCTGAGGATTTA 60.407 52.381 0.04 0.00 0.00 1.40
1718 2174 1.992277 AGCTGCGGTTCCTGAGGAT 60.992 57.895 0.04 0.00 0.00 3.24
1799 2255 3.648009 GTTGATCTGAATAGGAGGAGCG 58.352 50.000 0.00 0.00 0.00 5.03
1801 2257 3.553922 GCCGTTGATCTGAATAGGAGGAG 60.554 52.174 0.00 0.00 0.00 3.69
1803 2259 2.366916 AGCCGTTGATCTGAATAGGAGG 59.633 50.000 0.00 0.00 0.00 4.30
1805 2261 2.365617 GGAGCCGTTGATCTGAATAGGA 59.634 50.000 0.00 0.00 0.00 2.94
1809 2265 0.824109 TCGGAGCCGTTGATCTGAAT 59.176 50.000 8.96 0.00 39.27 2.57
1813 2269 1.682684 ACCTCGGAGCCGTTGATCT 60.683 57.895 8.96 0.00 40.74 2.75
1861 2317 1.673009 GGAATTGCCGTCCCGTTGA 60.673 57.895 0.00 0.00 0.00 3.18
2001 2457 3.743521 TGTTTACAGTCTGCTGCTGATT 58.256 40.909 12.42 5.62 46.30 2.57
2112 2568 4.034258 CTGTGCTGCGTGGCCTTG 62.034 66.667 3.32 0.00 0.00 3.61
2258 2714 1.449070 GTCGTCCCGGACCCAATTC 60.449 63.158 12.16 0.00 0.00 2.17
2354 2810 0.827368 GGAGTCTCTGGTAGGCCTTG 59.173 60.000 12.58 0.00 35.27 3.61
2456 2912 4.093408 TGAATCTGTCACGCATAAAGAAGC 59.907 41.667 0.00 0.00 0.00 3.86
2457 2913 5.349817 ACTGAATCTGTCACGCATAAAGAAG 59.650 40.000 0.00 0.00 31.13 2.85
2487 2943 2.672195 GCATCAGCATCATGCCATCATG 60.672 50.000 5.84 4.77 46.52 3.07
2488 2944 1.546029 GCATCAGCATCATGCCATCAT 59.454 47.619 5.84 0.00 46.52 2.45
2559 3015 2.665185 GCCAACGAACACGAGCCT 60.665 61.111 0.00 0.00 0.00 4.58
2639 3095 3.720002 ACACCTCAAAAACCCTCCTCTTA 59.280 43.478 0.00 0.00 0.00 2.10
2715 3171 3.960571 ACAGAACATGGCATTAGAAGCT 58.039 40.909 0.00 0.00 0.00 3.74
2722 3178 3.810941 CAGCAAAAACAGAACATGGCATT 59.189 39.130 0.00 0.00 0.00 3.56
2792 3250 4.085055 GCAACCGCTTTCTAAAAGAAAAGC 60.085 41.667 9.23 9.23 42.95 3.51
2847 3305 8.988060 TCCTGTTTGGTATCAAGATTATGTAGA 58.012 33.333 0.00 0.00 37.07 2.59
2924 3382 4.036971 TGCCGTAATTGTAGTTTGCTGTTT 59.963 37.500 0.00 0.00 0.00 2.83
2931 3389 3.377172 GGATGCTGCCGTAATTGTAGTTT 59.623 43.478 0.00 0.00 0.00 2.66
2954 3412 3.207669 CAGCGCCCAGATTCCAGC 61.208 66.667 2.29 0.00 0.00 4.85
2989 3447 1.165270 CGGGAAGCCTTCGACAATTT 58.835 50.000 0.00 0.00 0.00 1.82
3017 3477 1.571460 CAATTAGCTCGGCGATGGC 59.429 57.895 11.27 12.07 38.90 4.40
3118 3579 3.127030 GCAAAGCAGTAGTGTATCCCAAC 59.873 47.826 0.00 0.00 0.00 3.77
3141 3602 2.352030 CGGAATGCTGCATGTTTTGAGT 60.352 45.455 17.00 0.00 0.00 3.41
3195 3656 2.294979 GTTTTCTTGTGAAGGACGGGT 58.705 47.619 0.00 0.00 33.28 5.28
3231 3710 6.375455 GCCTAGAATTGGAGATGAACTTTTCA 59.625 38.462 0.00 0.00 45.01 2.69
3235 3714 5.441718 TGCCTAGAATTGGAGATGAACTT 57.558 39.130 0.00 0.00 0.00 2.66
3262 3741 3.689161 CCAACTGTGTGTTTCTGTTCAGA 59.311 43.478 0.00 0.00 36.63 3.27
3270 3749 6.983890 ACCAATTATTTCCAACTGTGTGTTTC 59.016 34.615 0.00 0.00 36.63 2.78
3286 3765 7.332430 TCACGACTAAACGATTGACCAATTATT 59.668 33.333 0.00 0.00 37.03 1.40
3292 3771 3.311106 GTCACGACTAAACGATTGACCA 58.689 45.455 0.00 0.00 35.09 4.02
3293 3772 2.340577 CGTCACGACTAAACGATTGACC 59.659 50.000 0.00 0.00 38.65 4.02
3312 3791 3.909776 TCTACGTGTCATTTCTGTCGT 57.090 42.857 0.00 0.00 35.73 4.34
3314 3793 3.368236 GCCTTCTACGTGTCATTTCTGTC 59.632 47.826 0.00 0.00 0.00 3.51
3351 3830 3.192001 TGAGCAAAGGCAATCTGATTCAC 59.808 43.478 0.00 0.00 44.61 3.18
3376 3855 2.162681 GCTGGTGGTACAGAAAAGCAT 58.837 47.619 0.00 0.00 41.80 3.79
3378 3857 0.881796 GGCTGGTGGTACAGAAAAGC 59.118 55.000 0.00 0.00 41.80 3.51
3398 3877 9.133627 GTTCTTCAGGAATTAAGATCTTTTTGC 57.866 33.333 14.36 12.78 36.24 3.68
3424 3903 7.872993 TGTACCTGACATGAGAAAAGAGTAAAG 59.127 37.037 0.00 0.00 31.20 1.85
3570 4051 5.189625 GTGTTGTGCAAAATGAAAACGATG 58.810 37.500 0.00 0.00 0.00 3.84
3574 4055 4.093261 AGCTGTGTTGTGCAAAATGAAAAC 59.907 37.500 0.00 0.00 0.00 2.43
3727 4208 9.859427 TTAATGCTCCTATTTTCATGACAAAAG 57.141 29.630 0.00 0.00 0.00 2.27
3774 4255 7.984422 AATTTATGCCGTGATCTGATAATGA 57.016 32.000 0.00 0.00 0.00 2.57
3893 4374 1.875576 GCACAGAGCAGAATATCCCCG 60.876 57.143 0.00 0.00 44.79 5.73
3982 4463 4.529897 TCAGCACATAAGCTTTCATCCAT 58.470 39.130 3.20 0.00 43.70 3.41
3983 4464 3.954200 TCAGCACATAAGCTTTCATCCA 58.046 40.909 3.20 0.00 43.70 3.41
4003 4484 8.723942 ATTGTAGTCCTAGACAACATGAATTC 57.276 34.615 0.00 0.00 38.33 2.17
4205 4687 5.297029 GCGAATAAAAGCTTACCCAAGAGAT 59.703 40.000 0.00 0.00 33.20 2.75
4514 5001 3.181485 TGTGATAACGATATGACACCGCA 60.181 43.478 0.96 0.00 31.77 5.69
4545 5032 3.611986 AGAAACACACACATTTGCAAACG 59.388 39.130 15.41 9.25 0.00 3.60
4635 5122 3.136626 GGGTATGGCATGAGGTACTTCTT 59.863 47.826 10.98 0.00 41.55 2.52
4637 5124 2.548067 CGGGTATGGCATGAGGTACTTC 60.548 54.545 10.98 0.00 41.55 3.01
4789 5276 4.475135 GGGACTTGCGCTCCTCCC 62.475 72.222 17.55 17.55 35.77 4.30
4991 5478 7.667043 TCGATTTTGTCAACTATATATGCCC 57.333 36.000 0.00 0.00 0.00 5.36
5040 5528 5.296780 TGCCTAGTTTACTCTATGCAAATGC 59.703 40.000 0.00 0.00 38.12 3.56
5041 5529 6.540189 ACTGCCTAGTTTACTCTATGCAAATG 59.460 38.462 0.00 0.00 39.59 2.32
5042 5530 6.653989 ACTGCCTAGTTTACTCTATGCAAAT 58.346 36.000 0.00 0.00 39.59 2.32
5043 5531 6.049955 ACTGCCTAGTTTACTCTATGCAAA 57.950 37.500 0.00 0.00 39.59 3.68
5216 5704 8.610896 CAGTGAACAGAAAGATAAGGATTCATC 58.389 37.037 0.00 0.00 0.00 2.92
5376 5864 6.238320 GCTTAACAAGAGCTTCCATATGACAG 60.238 42.308 3.65 0.41 37.18 3.51
5381 5869 5.128919 CAGGCTTAACAAGAGCTTCCATAT 58.871 41.667 0.00 0.00 40.01 1.78
5412 5900 0.389296 TGTACCGCACGTTGATCTGG 60.389 55.000 0.00 0.00 0.00 3.86
5457 5945 5.690464 AAGATATCTCACCAGAGTGCTTT 57.310 39.130 5.51 0.00 44.16 3.51
5643 6148 1.812571 CTGTCCACCTTTGCCATGTAC 59.187 52.381 0.00 0.00 0.00 2.90
5644 6149 1.702401 TCTGTCCACCTTTGCCATGTA 59.298 47.619 0.00 0.00 0.00 2.29
5645 6150 0.478072 TCTGTCCACCTTTGCCATGT 59.522 50.000 0.00 0.00 0.00 3.21
5668 6173 3.007074 TGGTGGAGCGTCAGTTGTTATTA 59.993 43.478 0.00 0.00 0.00 0.98
5692 6351 3.798889 GCCAGACTTAAAAGGGTTGCAAC 60.799 47.826 21.59 21.59 0.00 4.17
5749 6426 4.985538 TCAGCCTTGTTTCAGGAAGTAAT 58.014 39.130 0.00 0.00 35.71 1.89
5927 6630 0.310854 GGCTCCACAGTTTTTCGGTG 59.689 55.000 0.00 0.00 40.84 4.94
5946 6649 5.824904 AGCACTTAATCTGGCTGTTTATG 57.175 39.130 0.00 6.57 34.83 1.90
5955 6658 4.187694 GAGAGGTCAAGCACTTAATCTGG 58.812 47.826 0.00 0.00 0.00 3.86
5961 6664 5.104900 GGAATTAGGAGAGGTCAAGCACTTA 60.105 44.000 0.00 0.00 0.00 2.24
5967 6670 6.381420 TCAGTAAGGAATTAGGAGAGGTCAAG 59.619 42.308 0.00 0.00 0.00 3.02
6017 6725 2.711009 AGGAAGTGGGACAAGTCATCAA 59.289 45.455 2.29 0.00 44.16 2.57
6019 6727 3.425162 AAGGAAGTGGGACAAGTCATC 57.575 47.619 2.29 0.00 44.16 2.92
6021 6729 3.314693 ACTAAGGAAGTGGGACAAGTCA 58.685 45.455 2.29 0.00 44.16 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.