AutoCloner

Multiple sequence alignment - TraesCS6B01G353700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G353700	chr6B	100.000	3149	0	0	1	3149	619495027	619491879	0.000000e+00	5816
1	TraesCS6B01G353700	chr6B	78.812	623	77	29	1697	2317	158066893	158067462	4.960000e-98	368
2	TraesCS6B01G353700	chr6A	89.333	1650	99	28	725	2352	556679075	556677481	0.000000e+00	2001
3	TraesCS6B01G353700	chr6A	81.116	699	71	29	1650	2342	99973631	99974274	1.300000e-138	503
4	TraesCS6B01G353700	chr6A	78.887	701	88	29	29	674	556679871	556679176	1.350000e-113	420
5	TraesCS6B01G353700	chr6D	84.226	1756	153	58	676	2352	411769498	411767788	0.000000e+00	1594
6	TraesCS6B01G353700	chr6D	83.188	458	54	13	237	673	411770010	411769555	6.330000e-107	398
7	TraesCS6B01G353700	chr6D	77.409	633	75	35	1715	2342	83041902	83042471	6.560000e-82	315
8	TraesCS6B01G353700	chr3A	98.450	774	10	2	2377	3149	232859676	232858904	0.000000e+00	1362
9	TraesCS6B01G353700	chr2B	97.497	799	17	3	2353	3149	525953463	525954260	0.000000e+00	1362
10	TraesCS6B01G353700	chr2B	96.366	798	26	3	2353	3149	440933431	440934226	0.000000e+00	1310
11	TraesCS6B01G353700	chr2B	81.783	258	23	11	1987	2241	235902572	235902336	8.910000e-46	195
12	TraesCS6B01G353700	chr2B	86.164	159	15	2	1979	2134	235899912	235899758	6.990000e-37	165
13	TraesCS6B01G353700	chr2B	84.564	149	16	3	1979	2124	235059703	235059559	1.180000e-29	141
14	TraesCS6B01G353700	chr3B	96.992	798	21	3	2353	3149	118662988	118663783	0.000000e+00	1338
15	TraesCS6B01G353700	chr3B	79.457	258	38	9	360	611	354001483	354001731	5.400000e-38	169
16	TraesCS6B01G353700	chr4B	96.496	799	24	4	2353	3149	73240679	73239883	0.000000e+00	1317
17	TraesCS6B01G353700	chr4B	96.120	799	28	3	2353	3149	19636066	19636863	0.000000e+00	1301
18	TraesCS6B01G353700	chr4B	96.120	799	28	3	2353	3149	430105360	430106157	0.000000e+00	1301
19	TraesCS6B01G353700	chr5B	96.245	799	26	4	2353	3149	325517135	325517931	0.000000e+00	1306
20	TraesCS6B01G353700	chr5B	79.615	260	40	8	359	612	266012812	266013064	1.160000e-39	174
21	TraesCS6B01G353700	chr2A	96.245	799	27	3	2353	3149	626328306	626329103	0.000000e+00	1306
22	TraesCS6B01G353700	chr2A	78.656	253	41	10	360	602	273375584	273375833	4.210000e-34	156
23	TraesCS6B01G353700	chr1A	96.245	799	26	4	2353	3149	334609023	334608227	0.000000e+00	1306
24	TraesCS6B01G353700	chr1A	78.571	252	42	10	360	602	170098741	170098989	4.210000e-34	156
25	TraesCS6B01G353700	chr5D	85.837	812	73	22	1548	2352	358668932	358668156	0.000000e+00	824
26	TraesCS6B01G353700	chr7D	85.211	284	17	15	1637	1919	32581460	32581201	5.180000e-68	268
27	TraesCS6B01G353700	chr2D	81.533	287	24	15	1979	2261	178527010	178526749	3.180000e-50	209
28	TraesCS6B01G353700	chr2D	81.533	287	24	18	1979	2261	178694775	178694514	3.180000e-50	209
29	TraesCS6B01G353700	chrUn	80.081	246	33	14	360	598	239737729	239737493	5.400000e-38	169
30	TraesCS6B01G353700	chrUn	79.675	246	34	12	360	598	383689887	383689651	2.510000e-36	163
31	TraesCS6B01G353700	chr7B	78.077	260	44	7	359	612	414049598	414049850	5.440000e-33	152

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G353700	chr6B	619491879	619495027	3148	True	5816.0	5816	100.000	1	3149	1	chr6B.!!$R1	3148
1	TraesCS6B01G353700	chr6B	158066893	158067462	569	False	368.0	368	78.812	1697	2317	1	chr6B.!!$F1	620
2	TraesCS6B01G353700	chr6A	556677481	556679871	2390	True	1210.5	2001	84.110	29	2352	2	chr6A.!!$R1	2323
3	TraesCS6B01G353700	chr6A	99973631	99974274	643	False	503.0	503	81.116	1650	2342	1	chr6A.!!$F1	692
4	TraesCS6B01G353700	chr6D	411767788	411770010	2222	True	996.0	1594	83.707	237	2352	2	chr6D.!!$R1	2115
5	TraesCS6B01G353700	chr6D	83041902	83042471	569	False	315.0	315	77.409	1715	2342	1	chr6D.!!$F1	627
6	TraesCS6B01G353700	chr3A	232858904	232859676	772	True	1362.0	1362	98.450	2377	3149	1	chr3A.!!$R1	772
7	TraesCS6B01G353700	chr2B	525953463	525954260	797	False	1362.0	1362	97.497	2353	3149	1	chr2B.!!$F2	796
8	TraesCS6B01G353700	chr2B	440933431	440934226	795	False	1310.0	1310	96.366	2353	3149	1	chr2B.!!$F1	796
9	TraesCS6B01G353700	chr3B	118662988	118663783	795	False	1338.0	1338	96.992	2353	3149	1	chr3B.!!$F1	796
10	TraesCS6B01G353700	chr4B	73239883	73240679	796	True	1317.0	1317	96.496	2353	3149	1	chr4B.!!$R1	796
11	TraesCS6B01G353700	chr4B	19636066	19636863	797	False	1301.0	1301	96.120	2353	3149	1	chr4B.!!$F1	796
12	TraesCS6B01G353700	chr4B	430105360	430106157	797	False	1301.0	1301	96.120	2353	3149	1	chr4B.!!$F2	796
13	TraesCS6B01G353700	chr5B	325517135	325517931	796	False	1306.0	1306	96.245	2353	3149	1	chr5B.!!$F2	796
14	TraesCS6B01G353700	chr2A	626328306	626329103	797	False	1306.0	1306	96.245	2353	3149	1	chr2A.!!$F2	796
15	TraesCS6B01G353700	chr1A	334608227	334609023	796	True	1306.0	1306	96.245	2353	3149	1	chr1A.!!$R1	796
16	TraesCS6B01G353700	chr5D	358668156	358668932	776	True	824.0	824	85.837	1548	2352	1	chr5D.!!$R1	804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
883	1027	0.606401	CTTGGTCACCATTGCCGTCT	60.606	55.0	0.0	0.0	31.53	4.18	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2242	2466	0.393537	ATAGGCCAGCTCTGTTGCAC	60.394	55.0	5.01	0.0	34.99	4.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
36	37	9.883142	AAAATACACTTTGAAACATTCTTTGGA	57.117	25.926	0.00	0.00	0.00	3.53
87	88	9.787532	ATGCAGACATTGTTTTACATTATGTAC	57.212	29.630	4.35	0.00	31.73	2.90
88	89	9.008965	TGCAGACATTGTTTTACATTATGTACT	57.991	29.630	4.35	0.00	31.73	2.73
322	361	9.179552	TGTCAACATTTTTCTTCATAATGAACG	57.820	29.630	0.00	0.00	32.21	3.95
379	419	5.127356	GGAATATACTCCCTCCGTTCCATAG	59.873	48.000	0.00	0.00	35.05	2.23
384	424	2.361438	CTCCCTCCGTTCCATAGTGTAC	59.639	54.545	0.00	0.00	0.00	2.90
394	434	7.039293	TCCGTTCCATAGTGTACTGCATATAAT	60.039	37.037	0.00	0.00	0.00	1.28
469	527	9.778741	ATCTACAATACCAGTACCAAACATATG	57.221	33.333	0.00	0.00	0.00	1.78
568	630	7.760131	AATTTCGTCAAAATATGATGCTTGG	57.240	32.000	0.00	0.00	43.53	3.61
612	675	6.630413	GCACTACATTATGAAACAGAGGGAGA	60.630	42.308	0.00	0.00	0.00	3.71
615	678	8.552296	ACTACATTATGAAACAGAGGGAGAATT	58.448	33.333	0.00	0.00	0.00	2.17
674	740	4.329392	ACGGAAAAACGGAAATATGGACT	58.671	39.130	0.00	0.00	38.39	3.85
689	809	2.526873	ACTCGTGACTTGGGGCCT	60.527	61.111	0.84	0.00	0.00	5.19
718	838	1.144936	GTCAATCTGGGCCGGAGAG	59.855	63.158	21.63	15.15	0.00	3.20
723	843	3.465403	CTGGGCCGGAGAGAGTGG	61.465	72.222	6.48	0.00	0.00	4.00
749	888	1.061887	AACTCGCACGCAACACAAC	59.938	52.632	0.00	0.00	0.00	3.32
750	889	1.640210	AACTCGCACGCAACACAACA	61.640	50.000	0.00	0.00	0.00	3.33
753	892	0.794981	TCGCACGCAACACAACAAAC	60.795	50.000	0.00	0.00	0.00	2.93
815	955	3.727146	ACGCTTTTGTCCCGTCAC	58.273	55.556	0.00	0.00	0.00	3.67
848	988	2.255252	CGGTTTGGCTTCCGCTTG	59.745	61.111	3.22	0.00	40.28	4.01
868	1008	4.107051	CTTCCGCGCCTTGCTTGG	62.107	66.667	0.00	0.00	43.27	3.61
883	1027	0.606401	CTTGGTCACCATTGCCGTCT	60.606	55.000	0.00	0.00	31.53	4.18
910	1054	1.878522	CCTCGCGTTCTTGGATCGG	60.879	63.158	5.77	0.00	0.00	4.18
922	1066	3.115892	GATCGGTTCCACGCGCAA	61.116	61.111	5.73	0.00	0.00	4.85
1242	1398	0.938637	GCGAGATCGACAGCATGGAG	60.939	60.000	6.39	0.00	43.02	3.86
1315	1471	3.257469	TCGACTGGTACGACACTATCT	57.743	47.619	0.00	0.00	34.85	1.98
1317	1473	4.758688	TCGACTGGTACGACACTATCTTA	58.241	43.478	0.00	0.00	34.85	2.10
1318	1474	5.363101	TCGACTGGTACGACACTATCTTAT	58.637	41.667	0.00	0.00	34.85	1.73
1319	1475	6.515832	TCGACTGGTACGACACTATCTTATA	58.484	40.000	0.00	0.00	34.85	0.98
1324	1480	7.078249	TGGTACGACACTATCTTATACCCTA	57.922	40.000	0.00	0.00	31.50	3.53
1325	1481	7.693132	TGGTACGACACTATCTTATACCCTAT	58.307	38.462	0.00	0.00	31.50	2.57
1326	1482	7.826252	TGGTACGACACTATCTTATACCCTATC	59.174	40.741	0.00	0.00	31.50	2.08
1328	1484	6.186234	ACGACACTATCTTATACCCTATCCC	58.814	44.000	0.00	0.00	0.00	3.85
1329	1485	5.593502	CGACACTATCTTATACCCTATCCCC	59.406	48.000	0.00	0.00	0.00	4.81
1330	1486	6.494429	ACACTATCTTATACCCTATCCCCA	57.506	41.667	0.00	0.00	0.00	4.96
1343	1521	2.369983	ATCCCCATACCAATGCAGTG	57.630	50.000	7.29	7.29	0.00	3.66
1355	1533	4.039357	GCAGTGGCAGTGCAGCTG	62.039	66.667	35.76	24.82	43.79	4.24
1374	1552	2.281761	CCGTGACTGCCAGCCTTT	60.282	61.111	0.00	0.00	0.00	3.11
1388	1566	3.376546	CCAGCCTTTCTGCTCTGTATTTC	59.623	47.826	0.00	0.00	40.32	2.17
1543	1734	5.540911	CTGGAGAAGATAGCAGGAGAATTC	58.459	45.833	0.00	0.00	0.00	2.17
1554	1745	0.684479	GGAGAATTCCCAGGGTTGGC	60.684	60.000	5.01	0.00	43.58	4.52
1581	1772	8.335532	TGAATTCCTTGAAATGATTTCGTACT	57.664	30.769	12.72	0.00	42.55	2.73
1585	1776	5.088739	CCTTGAAATGATTTCGTACTGTGC	58.911	41.667	12.72	0.00	42.55	4.57
1595	1786	2.403259	TCGTACTGTGCTGTGTTGATG	58.597	47.619	0.00	0.00	0.00	3.07
1615	1806	3.076621	TGCAGTTTCATGATTCTTCGCT	58.923	40.909	0.00	0.00	0.00	4.93
1624	1815	5.288015	TCATGATTCTTCGCTCTGAGATTC	58.712	41.667	9.28	0.00	0.00	2.52
1682	1889	3.616956	AGCAATCTCTTGATTCGGACA	57.383	42.857	0.00	0.00	40.61	4.02
1690	1897	4.511454	TCTCTTGATTCGGACAAACAACAG	59.489	41.667	0.00	0.00	0.00	3.16
1794	2001	3.319137	AGCGTAAGTCAGCAGATTTGA	57.681	42.857	0.00	0.00	41.68	2.69
1795	2002	3.664107	AGCGTAAGTCAGCAGATTTGAA	58.336	40.909	0.00	0.00	41.68	2.69
1961	2176	5.287226	CCCACTATTCAGGTAACGTCATAC	58.713	45.833	0.00	0.00	46.39	2.39
2005	2220	5.964758	TGCATTTGTCCCTTTATGATTGAC	58.035	37.500	0.00	0.00	0.00	3.18
2050	2268	5.894807	TGCTTGCTCTTATTAATTTCCAGC	58.105	37.500	0.00	0.00	0.00	4.85
2161	2379	9.640963	AGAAGTACAAGTGACTGATTACATAAC	57.359	33.333	0.00	0.00	0.00	1.89
2242	2466	9.490379	AAAACTATATTCCAGCTCCTTAATACG	57.510	33.333	0.00	0.00	0.00	3.06
2243	2467	7.778185	ACTATATTCCAGCTCCTTAATACGT	57.222	36.000	0.00	0.00	0.00	3.57
2244	2468	7.603651	ACTATATTCCAGCTCCTTAATACGTG	58.396	38.462	0.00	0.00	0.00	4.49
2245	2469	2.596904	TCCAGCTCCTTAATACGTGC	57.403	50.000	0.00	0.00	0.00	5.34
2246	2470	1.828595	TCCAGCTCCTTAATACGTGCA	59.171	47.619	0.00	0.00	0.00	4.57
2247	2471	2.235155	TCCAGCTCCTTAATACGTGCAA	59.765	45.455	0.00	0.00	0.00	4.08
2268	2492	5.279506	GCAACAGAGCTGGCCTATACTATTA	60.280	44.000	3.32	0.00	34.19	0.98
2299	2526	7.750229	TGCAAGATTTCACTTGAATACTTCT	57.250	32.000	11.75	0.00	46.85	2.85
2342	2571	7.320443	TGGTGCATTGATCAGAAGTTAATAC	57.680	36.000	0.00	0.00	0.00	1.89
2343	2572	6.318648	TGGTGCATTGATCAGAAGTTAATACC	59.681	38.462	0.00	0.00	0.00	2.73
2362	2591	4.559862	ACCTAGAAATGGAGTTGAGGTG	57.440	45.455	0.00	0.00	34.55	4.00
2671	2901	2.292267	CGCTTATGGCAGATGTTCCTT	58.708	47.619	0.00	0.00	41.91	3.36
2825	3055	3.751621	CATCCACAACTCAGAAAATCGC	58.248	45.455	0.00	0.00	0.00	4.58
2862	3093	6.553852	AGTTGTCCCTCTTTAGTTGTCTTCTA	59.446	38.462	0.00	0.00	0.00	2.10
2884	3115	8.651589	TCTAACCCTCGTCTATCAATTGATAT	57.348	34.615	24.77	11.74	36.53	1.63
2986	3218	4.957296	GAGAAACAAACTCCAGTACCTCA	58.043	43.478	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
10	11	9.883142	TCCAAAGAATGTTTCAAAGTGTATTTT	57.117	25.926	0.00	0.00	0.00	1.82
11	12	9.883142	TTCCAAAGAATGTTTCAAAGTGTATTT	57.117	25.926	0.00	0.00	0.00	1.40
55	56	9.762933	AATGTAAAACAATGTCTGCATAGTTTT	57.237	25.926	0.00	0.00	40.79	2.43
160	181	8.155821	TGAAACGTAAACAAATGATCCTGTAA	57.844	30.769	0.00	0.00	0.00	2.41
165	186	9.567848	ACATTATGAAACGTAAACAAATGATCC	57.432	29.630	15.53	0.00	0.00	3.36
531	589	8.485976	TTTTGACGAAATTTGTGGAGAAAATT	57.514	26.923	0.00	0.00	38.54	1.82
549	609	4.297299	AGCCAAGCATCATATTTTGACG	57.703	40.909	0.00	0.00	37.11	4.35
651	714	4.763279	AGTCCATATTTCCGTTTTTCCGTT	59.237	37.500	0.00	0.00	0.00	4.44
674	740	0.907704	ACATAGGCCCCAAGTCACGA	60.908	55.000	0.00	0.00	0.00	4.35
689	809	2.093181	CCCAGATTGACCGGTGAACATA	60.093	50.000	14.63	0.00	0.00	2.29
749	888	7.489113	CGGGAAATATCTCCAGATTTTTGTTTG	59.511	37.037	9.05	0.00	36.37	2.93
750	889	7.363793	CCGGGAAATATCTCCAGATTTTTGTTT	60.364	37.037	9.05	0.00	36.37	2.83
753	892	5.594317	ACCGGGAAATATCTCCAGATTTTTG	59.406	40.000	6.32	0.26	36.37	2.44
868	1008	2.870372	GCAGACGGCAATGGTGAC	59.130	61.111	0.00	0.00	43.97	3.67
910	1054	2.353030	GTGGTTTGCGCGTGGAAC	60.353	61.111	8.43	10.24	0.00	3.62
979	1123	2.107141	CTCGATGGCTTCCCGGAC	59.893	66.667	0.73	0.00	0.00	4.79
1159	1312	3.086600	CCTCACCCCTCTCCCTGC	61.087	72.222	0.00	0.00	0.00	4.85
1164	1317	4.779733	TCCGCCCTCACCCCTCTC	62.780	72.222	0.00	0.00	0.00	3.20
1278	1434	0.949397	CGATGATGATGGGCTGGTTG	59.051	55.000	0.00	0.00	0.00	3.77
1315	1471	5.192923	GCATTGGTATGGGGATAGGGTATAA	59.807	44.000	0.00	0.00	32.15	0.98
1317	1473	3.527665	GCATTGGTATGGGGATAGGGTAT	59.472	47.826	0.00	0.00	32.15	2.73
1318	1474	2.916934	GCATTGGTATGGGGATAGGGTA	59.083	50.000	0.00	0.00	32.15	3.69
1319	1475	1.710809	GCATTGGTATGGGGATAGGGT	59.289	52.381	0.00	0.00	32.15	4.34
1324	1480	1.133388	CCACTGCATTGGTATGGGGAT	60.133	52.381	14.75	0.00	32.15	3.85
1325	1481	0.258484	CCACTGCATTGGTATGGGGA	59.742	55.000	14.75	0.00	32.15	4.81
1326	1482	1.394266	GCCACTGCATTGGTATGGGG	61.394	60.000	22.70	4.32	39.09	4.96
1328	1484	2.884976	TGCCACTGCATTGGTATGG	58.115	52.632	22.70	8.56	44.23	2.74
1374	1552	4.835678	TGCTGATTGAAATACAGAGCAGA	58.164	39.130	0.00	0.00	34.48	4.26
1388	1566	4.633126	AGCAACAGTACTACATGCTGATTG	59.367	41.667	21.61	7.34	45.03	2.67
1483	1674	2.639327	GCATTTCCGGCACCAGCTT	61.639	57.895	0.00	0.00	41.70	3.74
1554	1745	6.624423	ACGAAATCATTTCAAGGAATTCAGG	58.376	36.000	10.76	0.00	39.63	3.86
1581	1772	1.391577	AACTGCATCAACACAGCACA	58.608	45.000	0.00	0.00	37.42	4.57
1585	1776	4.492791	TCATGAAACTGCATCAACACAG	57.507	40.909	0.00	0.00	39.86	3.66
1595	1786	3.373439	AGAGCGAAGAATCATGAAACTGC	59.627	43.478	0.00	0.00	0.00	4.40
1615	1806	5.852282	TGTTGTGGATATCGAATCTCAGA	57.148	39.130	0.00	0.00	0.00	3.27
1624	1815	5.657470	ACGATTGATTGTTGTGGATATCG	57.343	39.130	0.00	0.00	39.43	2.92
1690	1897	5.291614	TGACTCTGCAAAAGAAACAAAATGC	59.708	36.000	2.91	0.00	33.37	3.56
1794	2001	6.490040	TCAAAATGAAGTGGCTAAGCTAAGTT	59.510	34.615	0.00	0.00	0.00	2.66
1795	2002	6.003950	TCAAAATGAAGTGGCTAAGCTAAGT	58.996	36.000	0.00	0.00	0.00	2.24
1885	2100	3.514645	GGCGCAATGACAGAATTCAAAT	58.485	40.909	10.83	0.00	0.00	2.32
1886	2101	2.352617	GGGCGCAATGACAGAATTCAAA	60.353	45.455	10.83	0.00	0.00	2.69
1887	2102	1.202114	GGGCGCAATGACAGAATTCAA	59.798	47.619	10.83	0.00	0.00	2.69
1888	2103	0.810648	GGGCGCAATGACAGAATTCA	59.189	50.000	10.83	0.00	0.00	2.57
1889	2104	0.810648	TGGGCGCAATGACAGAATTC	59.189	50.000	10.83	0.00	0.00	2.17
1901	2116	2.580815	CAGAGACAGATGGGCGCA	59.419	61.111	10.83	5.70	0.00	6.09
1904	2119	0.469070	AGATGCAGAGACAGATGGGC	59.531	55.000	0.00	0.00	0.00	5.36
1961	2176	6.198687	TGCAGAACTTCAGAAAACAAATACG	58.801	36.000	0.00	0.00	0.00	3.06
1962	2177	8.579682	AATGCAGAACTTCAGAAAACAAATAC	57.420	30.769	0.00	0.00	0.00	1.89
1963	2178	9.033481	CAAATGCAGAACTTCAGAAAACAAATA	57.967	29.630	0.00	0.00	0.00	1.40
1964	2179	7.550196	ACAAATGCAGAACTTCAGAAAACAAAT	59.450	29.630	0.00	0.00	0.00	2.32
2005	2220	7.637229	AGCATCATCATAAGAAATTCAGAACG	58.363	34.615	0.00	0.00	0.00	3.95
2050	2268	1.406069	CCATTCTCCGTCCTTCCACAG	60.406	57.143	0.00	0.00	0.00	3.66
2061	2279	1.834263	ACTTCCTCCTTCCATTCTCCG	59.166	52.381	0.00	0.00	0.00	4.63
2242	2466	0.393537	ATAGGCCAGCTCTGTTGCAC	60.394	55.000	5.01	0.00	34.99	4.57
2243	2467	1.134401	GTATAGGCCAGCTCTGTTGCA	60.134	52.381	5.01	0.00	34.99	4.08
2244	2468	1.139853	AGTATAGGCCAGCTCTGTTGC	59.860	52.381	5.01	0.00	0.00	4.17
2245	2469	4.881019	ATAGTATAGGCCAGCTCTGTTG	57.119	45.455	5.01	0.00	0.00	3.33
2246	2470	6.996180	TTAATAGTATAGGCCAGCTCTGTT	57.004	37.500	5.01	5.46	0.00	3.16
2247	2471	6.957020	AGATTAATAGTATAGGCCAGCTCTGT	59.043	38.462	5.01	0.00	0.00	3.41
2268	2492	6.395426	TCAAGTGAAATCTTGCAACAGATT	57.605	33.333	7.67	7.67	44.05	2.40
2299	2526	7.278875	TGCACCATATGTATCAATACAGAACA	58.721	34.615	8.66	0.00	45.46	3.18
2314	2541	6.387041	AACTTCTGATCAATGCACCATATG	57.613	37.500	0.00	0.00	0.00	1.78
2315	2542	8.701908	ATTAACTTCTGATCAATGCACCATAT	57.298	30.769	0.00	0.00	0.00	1.78
2342	2571	4.559862	ACACCTCAACTCCATTTCTAGG	57.440	45.455	0.00	0.00	0.00	3.02
2343	2572	5.799213	AGAACACCTCAACTCCATTTCTAG	58.201	41.667	0.00	0.00	0.00	2.43
2362	2591	6.974622	CCAACATAATGTCAAGGCAATAGAAC	59.025	38.462	0.00	0.00	0.00	3.01
2825	3055	3.490348	AGGGACAACTCAAAGGAACATG	58.510	45.455	0.00	0.00	0.00	3.21
2862	3093	7.735917	TGAATATCAATTGATAGACGAGGGTT	58.264	34.615	27.37	16.80	40.04	4.11
2884	3115	2.348362	CGAATGCACGCATACTCTTGAA	59.652	45.455	4.68	0.00	35.31	2.69
2986	3218	3.612458	TGACCCAATCCTGGATATGGAT	58.388	45.455	26.22	17.10	46.92	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.