AutoCloner

Multiple sequence alignment - TraesCS6B01G353600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G353600	chr6B	100.000	2297	0	0	1	2297	619483010	619485306	0.000000e+00	4242.0
1	TraesCS6B01G353600	chr6B	96.710	699	13	6	1605	2297	180018824	180019518	0.000000e+00	1155.0
2	TraesCS6B01G353600	chr6B	89.279	541	39	7	818	1352	619404566	619405093	0.000000e+00	660.0
3	TraesCS6B01G353600	chr6B	88.608	79	8	1	728	806	619404500	619404577	6.760000e-16	95.3
4	TraesCS6B01G353600	chr6A	89.409	1473	78	30	176	1615	556676052	556677479	0.000000e+00	1784.0
5	TraesCS6B01G353600	chr6A	96.567	699	15	5	1605	2297	386629890	386630585	0.000000e+00	1149.0
6	TraesCS6B01G353600	chr6A	82.258	682	57	21	639	1320	556669342	556669959	4.350000e-147	531.0
7	TraesCS6B01G353600	chr6D	85.671	1654	122	48	1	1615	411766209	411767786	0.000000e+00	1635.0
8	TraesCS6B01G353600	chr6D	91.091	449	30	5	910	1352	411725951	411726395	1.170000e-167	599.0
9	TraesCS6B01G353600	chr6D	87.059	85	8	3	728	810	411725819	411725902	2.430000e-15	93.5
10	TraesCS6B01G353600	chr2A	96.996	699	11	6	1605	2297	64134754	64135448	0.000000e+00	1166.0
11	TraesCS6B01G353600	chr7A	96.853	699	12	7	1605	2297	431218047	431217353	0.000000e+00	1160.0
12	TraesCS6B01G353600	chr7A	96.714	700	14	6	1605	2297	141375690	141376387	0.000000e+00	1157.0
13	TraesCS6B01G353600	chr3B	96.710	699	14	5	1605	2297	392886331	392885636	0.000000e+00	1155.0
14	TraesCS6B01G353600	chr7B	96.567	699	16	5	1605	2297	569035989	569035293	0.000000e+00	1151.0
15	TraesCS6B01G353600	chr5A	96.567	699	17	2	1605	2297	165799236	165798539	0.000000e+00	1151.0
16	TraesCS6B01G353600	chr3A	96.567	699	16	3	1605	2297	185776837	185776141	0.000000e+00	1151.0
17	TraesCS6B01G353600	chr3A	82.808	349	42	9	985	1332	541225952	541226283	1.730000e-76	296.0
18	TraesCS6B01G353600	chr2D	80.374	214	31	5	1408	1614	178525917	178526126	3.950000e-33	152.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G353600	chr6B	619483010	619485306	2296	False	4242.00	4242	100.0000	1	2297	1	chr6B.!!$F2	2296
1	TraesCS6B01G353600	chr6B	180018824	180019518	694	False	1155.00	1155	96.7100	1605	2297	1	chr6B.!!$F1	692
2	TraesCS6B01G353600	chr6B	619404500	619405093	593	False	377.65	660	88.9435	728	1352	2	chr6B.!!$F3	624
3	TraesCS6B01G353600	chr6A	556676052	556677479	1427	False	1784.00	1784	89.4090	176	1615	1	chr6A.!!$F3	1439
4	TraesCS6B01G353600	chr6A	386629890	386630585	695	False	1149.00	1149	96.5670	1605	2297	1	chr6A.!!$F1	692
5	TraesCS6B01G353600	chr6A	556669342	556669959	617	False	531.00	531	82.2580	639	1320	1	chr6A.!!$F2	681
6	TraesCS6B01G353600	chr6D	411766209	411767786	1577	False	1635.00	1635	85.6710	1	1615	1	chr6D.!!$F1	1614
7	TraesCS6B01G353600	chr6D	411725819	411726395	576	False	346.25	599	89.0750	728	1352	2	chr6D.!!$F2	624
8	TraesCS6B01G353600	chr2A	64134754	64135448	694	False	1166.00	1166	96.9960	1605	2297	1	chr2A.!!$F1	692
9	TraesCS6B01G353600	chr7A	431217353	431218047	694	True	1160.00	1160	96.8530	1605	2297	1	chr7A.!!$R1	692
10	TraesCS6B01G353600	chr7A	141375690	141376387	697	False	1157.00	1157	96.7140	1605	2297	1	chr7A.!!$F1	692
11	TraesCS6B01G353600	chr3B	392885636	392886331	695	True	1155.00	1155	96.7100	1605	2297	1	chr3B.!!$R1	692
12	TraesCS6B01G353600	chr7B	569035293	569035989	696	True	1151.00	1151	96.5670	1605	2297	1	chr7B.!!$R1	692
13	TraesCS6B01G353600	chr5A	165798539	165799236	697	True	1151.00	1151	96.5670	1605	2297	1	chr5A.!!$R1	692
14	TraesCS6B01G353600	chr3A	185776141	185776837	696	True	1151.00	1151	96.5670	1605	2297	1	chr3A.!!$R1	692

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
70	71	0.108520	TCGGCGAGGCGAATAAAACT	60.109	50.0	19.1	0.0	0.00	2.66	F
736	785	0.165944	CAATCAGACGCCCACGAAAC	59.834	55.0	0.0	0.0	43.93	2.78	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1045	1121	1.303317	GGAACACGGCCACCTTGAT	60.303	57.895	2.24	0.0	0.0	2.57	R
1597	1696	2.100584	TGCCAACAACAATCAGGAACAC	59.899	45.455	0.00	0.0	0.0	3.32	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
28	29	1.922821	CGGAAGGTTCCCATGGGAT	59.077	57.895	34.21	19.70	44.74	3.85
30	31	1.072331	CGGAAGGTTCCCATGGGATAG	59.928	57.143	34.21	15.57	44.74	2.08
31	32	1.202940	GGAAGGTTCCCATGGGATAGC	60.203	57.143	34.21	28.82	44.74	2.97
48	49	2.505982	CCCACAGTAGCATCCGGG	59.494	66.667	0.00	0.00	0.00	5.73
63	64	4.524318	GGGAATCGGCGAGGCGAA	62.524	66.667	24.43	9.39	0.00	4.70
64	65	2.280186	GGAATCGGCGAGGCGAAT	60.280	61.111	24.43	17.19	0.00	3.34
65	66	1.006571	GGAATCGGCGAGGCGAATA	60.007	57.895	24.43	3.60	0.00	1.75
67	68	1.214367	GAATCGGCGAGGCGAATAAA	58.786	50.000	24.43	2.83	0.00	1.40
68	69	1.595794	GAATCGGCGAGGCGAATAAAA	59.404	47.619	24.43	2.08	0.00	1.52
69	70	0.935196	ATCGGCGAGGCGAATAAAAC	59.065	50.000	24.43	0.00	0.00	2.43
70	71	0.108520	TCGGCGAGGCGAATAAAACT	60.109	50.000	19.10	0.00	0.00	2.66
71	72	1.134753	TCGGCGAGGCGAATAAAACTA	59.865	47.619	19.10	0.00	0.00	2.24
72	73	1.928503	CGGCGAGGCGAATAAAACTAA	59.071	47.619	13.92	0.00	0.00	2.24
75	76	2.934553	GCGAGGCGAATAAAACTAACCT	59.065	45.455	0.00	0.00	0.00	3.50
77	78	4.726876	GCGAGGCGAATAAAACTAACCTTG	60.727	45.833	0.00	0.00	0.00	3.61
78	79	4.201783	CGAGGCGAATAAAACTAACCTTGG	60.202	45.833	0.00	0.00	0.00	3.61
79	80	4.014406	AGGCGAATAAAACTAACCTTGGG	58.986	43.478	0.00	0.00	0.00	4.12
80	81	3.129813	GGCGAATAAAACTAACCTTGGGG	59.870	47.826	0.00	0.00	38.88	4.96
82	83	4.380128	GCGAATAAAACTAACCTTGGGGTG	60.380	45.833	0.00	0.00	46.67	4.61
83	84	4.157105	CGAATAAAACTAACCTTGGGGTGG	59.843	45.833	0.00	0.00	46.67	4.61
84	85	2.391926	AAAACTAACCTTGGGGTGGG	57.608	50.000	0.00	0.00	46.67	4.61
85	86	0.485543	AAACTAACCTTGGGGTGGGG	59.514	55.000	0.00	0.00	46.67	4.96
86	87	0.403750	AACTAACCTTGGGGTGGGGA	60.404	55.000	0.00	0.00	46.67	4.81
87	88	0.178813	ACTAACCTTGGGGTGGGGAT	60.179	55.000	0.00	0.00	46.67	3.85
88	89	0.258774	CTAACCTTGGGGTGGGGATG	59.741	60.000	0.00	0.00	46.67	3.51
89	90	1.869824	TAACCTTGGGGTGGGGATGC	61.870	60.000	0.00	0.00	46.67	3.91
90	91	3.671410	CCTTGGGGTGGGGATGCA	61.671	66.667	0.00	0.00	0.00	3.96
91	92	2.691732	CTTGGGGTGGGGATGCAT	59.308	61.111	0.00	0.00	0.00	3.96
92	93	1.456331	CTTGGGGTGGGGATGCATC	60.456	63.158	18.81	18.81	0.00	3.91
93	94	3.357444	TTGGGGTGGGGATGCATCG	62.357	63.158	20.15	0.00	0.00	3.84
94	95	3.488569	GGGGTGGGGATGCATCGA	61.489	66.667	20.15	4.17	0.00	3.59
99	100	2.280186	GGGGATGCATCGACCGAC	60.280	66.667	20.15	5.28	0.00	4.79
141	142	8.803235	TCTAGAAAGAGATACTAACAACTTGCA	58.197	33.333	0.00	0.00	0.00	4.08
145	146	6.552445	AGAGATACTAACAACTTGCAGGAT	57.448	37.500	1.40	0.00	0.00	3.24
152	153	3.996150	ACAACTTGCAGGATTGTCTTG	57.004	42.857	1.40	0.00	30.82	3.02
359	378	0.824759	AGTGCTCCCTGATTACGTCC	59.175	55.000	0.00	0.00	0.00	4.79
390	409	3.788227	AACCACTGCTTCCAGAATACA	57.212	42.857	0.00	0.00	41.77	2.29
463	486	4.220602	TCCATCTGTCTCGAGAATCACAAA	59.779	41.667	18.55	0.00	33.17	2.83
477	504	0.300491	CACAAACACCACGTCACTCG	59.700	55.000	0.00	0.00	46.00	4.18
585	626	1.136690	GCGAAGATGTTGACACGACA	58.863	50.000	0.00	0.00	0.00	4.35
621	662	4.466827	GTCCCAAACCAAAAGTAGGAAGA	58.533	43.478	0.00	0.00	0.00	2.87
622	663	4.891168	GTCCCAAACCAAAAGTAGGAAGAA	59.109	41.667	0.00	0.00	0.00	2.52
623	664	5.361571	GTCCCAAACCAAAAGTAGGAAGAAA	59.638	40.000	0.00	0.00	0.00	2.52
624	665	5.958987	TCCCAAACCAAAAGTAGGAAGAAAA	59.041	36.000	0.00	0.00	0.00	2.29
625	666	6.440965	TCCCAAACCAAAAGTAGGAAGAAAAA	59.559	34.615	0.00	0.00	0.00	1.94
660	706	5.403897	TGAAAACGTGAAGCTAAAGACTG	57.596	39.130	0.00	0.00	0.00	3.51
671	717	2.551071	GCTAAAGACTGGTTCCACAGCT	60.551	50.000	0.00	0.00	42.21	4.24
677	723	2.595463	GGTTCCACAGCTGCAGCA	60.595	61.111	38.24	16.73	45.16	4.41
678	724	2.195567	GGTTCCACAGCTGCAGCAA	61.196	57.895	38.24	21.74	45.16	3.91
724	773	3.430862	GCAACGCGGCCAATCAGA	61.431	61.111	12.47	0.00	0.00	3.27
734	783	1.375396	CCAATCAGACGCCCACGAA	60.375	57.895	0.00	0.00	43.93	3.85
735	784	0.953471	CCAATCAGACGCCCACGAAA	60.953	55.000	0.00	0.00	43.93	3.46
736	785	0.165944	CAATCAGACGCCCACGAAAC	59.834	55.000	0.00	0.00	43.93	2.78
771	831	1.509644	TTGCGTACACGACCGAGAGT	61.510	55.000	5.84	0.00	43.02	3.24
779	839	5.225949	CGTACACGACCGAGAGTAAAATAAC	59.774	44.000	0.00	0.00	43.02	1.89
785	845	5.217978	ACCGAGAGTAAAATAACCACACA	57.782	39.130	0.00	0.00	0.00	3.72
832	892	4.332637	AAGCACAAGCCAAGCGCG	62.333	61.111	0.00	0.00	44.76	6.86
929	1005	1.065199	TCATCATCAGCCACAAGGGAC	60.065	52.381	0.00	0.00	40.01	4.46
968	1044	3.733709	AGCCTCTTTGGTTGACTGG	57.266	52.632	0.00	0.00	38.35	4.00
1010	1086	1.626356	CCGGTGACCATGATGGAGGT	61.626	60.000	20.11	0.00	40.96	3.85
1014	1090	1.152881	GACCATGATGGAGGTGGCC	60.153	63.158	20.11	0.00	40.96	5.36
1135	1211	2.329267	TCTCCAAGAACAAGAGGCTCA	58.671	47.619	18.26	0.00	0.00	4.26
1250	1332	1.154093	CGCCTTCGCTGTCTTCGTA	60.154	57.895	0.00	0.00	0.00	3.43
1265	1347	2.251869	TCGTATTCTTCGTGGTCGTG	57.748	50.000	0.00	0.00	38.33	4.35
1580	1678	5.358442	TCGGTTCTTCAGAATTTGTTTCCAA	59.642	36.000	0.00	0.00	36.33	3.53
1584	1682	7.710475	GGTTCTTCAGAATTTGTTTCCAATGAA	59.290	33.333	0.00	0.00	36.33	2.57
1592	1691	9.393512	AGAATTTGTTTCCAATGAATTGTGAAA	57.606	25.926	12.03	12.03	36.03	2.69
1603	1702	9.520204	CCAATGAATTGTGAAATATAGTGTTCC	57.480	33.333	2.55	0.00	36.06	3.62
1631	1730	4.586421	TGTTGTTGGCATAAAGGAACATCA	59.414	37.500	0.00	0.00	0.00	3.07

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
26	27	1.337260	CGGATGCTACTGTGGGCTATC	60.337	57.143	8.53	8.95	0.00	2.08
28	29	1.399744	CCGGATGCTACTGTGGGCTA	61.400	60.000	0.00	0.00	0.00	3.93
30	31	2.203070	CCGGATGCTACTGTGGGC	60.203	66.667	0.00	0.00	0.00	5.36
31	32	1.622607	TTCCCGGATGCTACTGTGGG	61.623	60.000	0.73	0.00	38.02	4.61
48	49	1.214367	TTTATTCGCCTCGCCGATTC	58.786	50.000	0.00	0.00	37.06	2.52
75	76	2.689175	GATGCATCCCCACCCCAA	59.311	61.111	16.23	0.00	0.00	4.12
77	78	3.488569	TCGATGCATCCCCACCCC	61.489	66.667	20.87	0.00	0.00	4.95
78	79	2.203209	GTCGATGCATCCCCACCC	60.203	66.667	20.87	0.00	0.00	4.61
79	80	2.203209	GGTCGATGCATCCCCACC	60.203	66.667	20.87	18.73	0.00	4.61
80	81	2.588877	CGGTCGATGCATCCCCAC	60.589	66.667	20.87	14.08	0.00	4.61
81	82	2.762043	TCGGTCGATGCATCCCCA	60.762	61.111	20.87	3.16	0.00	4.96
82	83	2.280186	GTCGGTCGATGCATCCCC	60.280	66.667	20.87	18.44	0.00	4.81
83	84	2.658593	CGTCGGTCGATGCATCCC	60.659	66.667	20.87	15.49	42.86	3.85
84	85	2.658593	CCGTCGGTCGATGCATCC	60.659	66.667	20.87	6.98	42.86	3.51
85	86	1.944676	GACCGTCGGTCGATGCATC	60.945	63.158	27.59	17.10	43.14	3.91
86	87	2.104331	GACCGTCGGTCGATGCAT	59.896	61.111	27.59	0.00	43.14	3.96
94	95	2.529780	TATGTGTTTTGACCGTCGGT	57.470	45.000	18.94	18.94	39.44	4.69
99	100	8.251750	TCTTTCTAGAATATGTGTTTTGACCG	57.748	34.615	5.89	0.00	0.00	4.79
127	128	5.865085	AGACAATCCTGCAAGTTGTTAGTA	58.135	37.500	4.48	0.00	36.30	1.82
128	129	4.718961	AGACAATCCTGCAAGTTGTTAGT	58.281	39.130	4.48	0.00	36.30	2.24
131	132	3.068590	CCAAGACAATCCTGCAAGTTGTT	59.931	43.478	4.48	0.00	36.30	2.83
141	142	1.207329	GCCTCGTACCAAGACAATCCT	59.793	52.381	0.00	0.00	0.00	3.24
145	146	1.000506	GAGTGCCTCGTACCAAGACAA	59.999	52.381	0.00	0.00	0.00	3.18
152	153	1.798813	CTTGTTTGAGTGCCTCGTACC	59.201	52.381	0.00	0.00	32.35	3.34
169	172	4.270178	ACGCGCTAAGTAGTAGTACTTG	57.730	45.455	26.52	18.63	46.91	3.16
171	174	4.433615	TGTACGCGCTAAGTAGTAGTACT	58.566	43.478	5.73	8.14	41.61	2.73
172	175	4.318404	CCTGTACGCGCTAAGTAGTAGTAC	60.318	50.000	5.73	7.64	34.01	2.73
173	176	3.804325	CCTGTACGCGCTAAGTAGTAGTA	59.196	47.826	5.73	0.00	31.78	1.82
174	177	2.611292	CCTGTACGCGCTAAGTAGTAGT	59.389	50.000	5.73	0.00	31.78	2.73
350	365	2.068837	TCCAACACACGGACGTAATC	57.931	50.000	0.00	0.00	0.00	1.75
359	378	0.248458	GCAGTGGTTTCCAACACACG	60.248	55.000	0.00	0.00	39.99	4.49
390	409	3.528905	TGTCCAGGAAATCCCATCAGAAT	59.471	43.478	0.00	0.00	37.41	2.40
399	422	4.553330	TCTACACTTGTCCAGGAAATCC	57.447	45.455	0.00	0.00	0.00	3.01
406	429	4.403752	TCTCATCCATCTACACTTGTCCAG	59.596	45.833	0.00	0.00	0.00	3.86
477	504	1.377333	CGGCTTGGGGGAAAGAGAC	60.377	63.158	0.00	0.00	0.00	3.36
502	529	2.094894	CGTGTGAAGGCTGCTAAGATTG	59.905	50.000	0.00	0.00	0.00	2.67
585	626	2.732658	GGACCTCGACGTGGTGTT	59.267	61.111	25.12	1.63	38.03	3.32
588	629	2.135581	TTTGGGACCTCGACGTGGT	61.136	57.895	20.81	20.81	41.07	4.16
622	663	9.418045	TCACGTTTTCATTTTCTCTTTCTTTTT	57.582	25.926	0.00	0.00	0.00	1.94
623	664	8.980143	TCACGTTTTCATTTTCTCTTTCTTTT	57.020	26.923	0.00	0.00	0.00	2.27
624	665	8.980143	TTCACGTTTTCATTTTCTCTTTCTTT	57.020	26.923	0.00	0.00	0.00	2.52
625	666	7.220875	GCTTCACGTTTTCATTTTCTCTTTCTT	59.779	33.333	0.00	0.00	0.00	2.52
626	667	6.693113	GCTTCACGTTTTCATTTTCTCTTTCT	59.307	34.615	0.00	0.00	0.00	2.52
627	668	6.693113	AGCTTCACGTTTTCATTTTCTCTTTC	59.307	34.615	0.00	0.00	0.00	2.62
628	669	6.564328	AGCTTCACGTTTTCATTTTCTCTTT	58.436	32.000	0.00	0.00	0.00	2.52
629	670	6.136541	AGCTTCACGTTTTCATTTTCTCTT	57.863	33.333	0.00	0.00	0.00	2.85
630	671	5.757850	AGCTTCACGTTTTCATTTTCTCT	57.242	34.783	0.00	0.00	0.00	3.10
631	672	7.855904	TCTTTAGCTTCACGTTTTCATTTTCTC	59.144	33.333	0.00	0.00	0.00	2.87
632	673	7.644157	GTCTTTAGCTTCACGTTTTCATTTTCT	59.356	33.333	0.00	0.00	0.00	2.52
633	674	7.644157	AGTCTTTAGCTTCACGTTTTCATTTTC	59.356	33.333	0.00	0.00	0.00	2.29
634	675	7.432252	CAGTCTTTAGCTTCACGTTTTCATTTT	59.568	33.333	0.00	0.00	0.00	1.82
660	706	2.138656	CTTGCTGCAGCTGTGGAACC	62.139	60.000	36.61	7.74	42.66	3.62
724	773	1.890510	GTGAAGGTTTCGTGGGCGT	60.891	57.895	0.00	0.00	39.49	5.68
734	783	1.381165	AAACGCAAGCGGTGAAGGTT	61.381	50.000	19.30	0.00	40.27	3.50
735	784	1.822186	AAACGCAAGCGGTGAAGGT	60.822	52.632	19.30	0.00	40.27	3.50
736	785	1.370414	CAAACGCAAGCGGTGAAGG	60.370	57.895	19.30	0.00	40.27	3.46
771	831	4.034626	CGATGGCGATGTGTGGTTATTTTA	59.965	41.667	0.00	0.00	40.82	1.52
779	839	2.819154	TGCGATGGCGATGTGTGG	60.819	61.111	0.00	0.00	44.10	4.17
785	845	3.282157	GGCATGTGCGATGGCGAT	61.282	61.111	6.36	0.00	44.10	4.58
965	1041	0.249489	GGGGTCGATCGATCAACCAG	60.249	60.000	31.28	13.32	35.56	4.00
968	1044	0.317938	CGAGGGGTCGATCGATCAAC	60.318	60.000	28.32	20.08	41.40	3.18
1014	1090	3.206211	GAGCTCCGGCGAGATGAGG	62.206	68.421	9.30	0.00	44.37	3.86
1045	1121	1.303317	GGAACACGGCCACCTTGAT	60.303	57.895	2.24	0.00	0.00	2.57
1046	1122	2.112297	GGAACACGGCCACCTTGA	59.888	61.111	2.24	0.00	0.00	3.02
1135	1211	2.685380	CCGGAAGCTGAGGGACCT	60.685	66.667	0.00	0.00	0.00	3.85
1250	1332	1.736645	CGCCACGACCACGAAGAAT	60.737	57.895	0.00	0.00	42.66	2.40
1272	1354	1.745489	CTCTTTGCGGCTACCCCAC	60.745	63.158	0.00	0.00	0.00	4.61
1457	1555	3.060479	ACATATCTACAAGGCCCCAGA	57.940	47.619	0.00	0.00	0.00	3.86
1525	1623	9.513906	TCCACATTCACAATTTATACAGAAGAA	57.486	29.630	0.00	0.00	0.00	2.52
1580	1678	9.685276	TCAGGAACACTATATTTCACAATTCAT	57.315	29.630	0.00	0.00	0.00	2.57
1584	1682	9.466497	ACAATCAGGAACACTATATTTCACAAT	57.534	29.630	0.00	0.00	0.00	2.71
1592	1691	6.095440	GCCAACAACAATCAGGAACACTATAT	59.905	38.462	0.00	0.00	0.00	0.86
1593	1692	5.414454	GCCAACAACAATCAGGAACACTATA	59.586	40.000	0.00	0.00	0.00	1.31
1594	1693	4.218417	GCCAACAACAATCAGGAACACTAT	59.782	41.667	0.00	0.00	0.00	2.12
1595	1694	3.568007	GCCAACAACAATCAGGAACACTA	59.432	43.478	0.00	0.00	0.00	2.74
1596	1695	2.362077	GCCAACAACAATCAGGAACACT	59.638	45.455	0.00	0.00	0.00	3.55
1597	1696	2.100584	TGCCAACAACAATCAGGAACAC	59.899	45.455	0.00	0.00	0.00	3.32
1598	1697	2.382882	TGCCAACAACAATCAGGAACA	58.617	42.857	0.00	0.00	0.00	3.18
1603	1702	5.389859	TCCTTTATGCCAACAACAATCAG	57.610	39.130	0.00	0.00	0.00	2.90
1631	1730	4.202357	GCAAAATCCTTTCCCTCTGGTTTT	60.202	41.667	0.00	0.00	0.00	2.43
1762	1862	5.705441	TCTCGAAACCTTGATATTGTGCTTT	59.295	36.000	0.00	0.00	0.00	3.51

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.