Multiple sequence alignment - TraesCS6B01G353100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G353100 chr6B 100.000 5254 0 0 1 5254 618935498 618940751 0.000000e+00 9703.0
1 TraesCS6B01G353100 chr6B 95.122 41 2 0 667 707 618889245 618889285 1.220000e-06 65.8
2 TraesCS6B01G353100 chr6A 90.940 3841 259 52 700 4484 556526489 556530296 0.000000e+00 5083.0
3 TraesCS6B01G353100 chr6A 92.032 502 27 12 4501 4994 556530366 556530862 0.000000e+00 693.0
4 TraesCS6B01G353100 chr6D 93.960 1871 75 23 1416 3278 411611013 411612853 0.000000e+00 2795.0
5 TraesCS6B01G353100 chr6D 88.263 1670 146 29 3334 4967 411613204 411614859 0.000000e+00 1953.0
6 TraesCS6B01G353100 chr6D 94.545 660 28 4 2 655 446603586 446602929 0.000000e+00 1013.0
7 TraesCS6B01G353100 chr6D 92.116 723 41 11 699 1415 411610270 411610982 0.000000e+00 1005.0
8 TraesCS6B01G353100 chr6D 88.189 254 28 2 4993 5246 90561385 90561134 8.550000e-78 302.0
9 TraesCS6B01G353100 chr7D 95.903 659 18 5 2 654 474490393 474489738 0.000000e+00 1059.0
10 TraesCS6B01G353100 chr7D 95.461 661 24 4 2 657 621163375 621164034 0.000000e+00 1050.0
11 TraesCS6B01G353100 chr1D 95.331 664 22 5 2 658 445569220 445569881 0.000000e+00 1046.0
12 TraesCS6B01G353100 chr2B 94.977 657 30 1 2 655 708546871 708547527 0.000000e+00 1027.0
13 TraesCS6B01G353100 chr2B 94.251 661 32 4 2 657 643126181 643126840 0.000000e+00 1005.0
14 TraesCS6B01G353100 chr2B 83.671 888 110 25 2953 3818 652619921 652619047 0.000000e+00 804.0
15 TraesCS6B01G353100 chr2B 85.808 458 50 6 2504 2949 652620417 652619963 6.160000e-129 472.0
16 TraesCS6B01G353100 chr2B 85.484 248 34 2 978 1225 652620759 652620514 1.880000e-64 257.0
17 TraesCS6B01G353100 chr4B 94.825 657 31 1 2 655 483941202 483941858 0.000000e+00 1022.0
18 TraesCS6B01G353100 chr7B 94.260 662 35 1 2 660 389094393 389095054 0.000000e+00 1009.0
19 TraesCS6B01G353100 chr7B 94.268 663 29 5 2 657 603840110 603840770 0.000000e+00 1005.0
20 TraesCS6B01G353100 chr7B 88.672 256 27 1 4992 5245 88139322 88139577 1.420000e-80 311.0
21 TraesCS6B01G353100 chr2D 80.578 1349 183 47 2953 4262 545941721 545940413 0.000000e+00 966.0
22 TraesCS6B01G353100 chr2D 86.022 837 74 22 2142 2949 545942585 545941763 0.000000e+00 857.0
23 TraesCS6B01G353100 chr2D 82.990 582 70 14 1564 2132 545943282 545942717 2.830000e-137 499.0
24 TraesCS6B01G353100 chr2D 87.645 259 31 1 4996 5254 485458211 485458468 3.080000e-77 300.0
25 TraesCS6B01G353100 chr2D 84.411 263 38 3 963 1225 545943806 545943547 6.750000e-64 255.0
26 TraesCS6B01G353100 chr2A 79.882 1357 185 54 2953 4262 687003449 687002134 0.000000e+00 913.0
27 TraesCS6B01G353100 chr2A 85.784 816 72 22 2164 2949 687004290 687003489 0.000000e+00 824.0
28 TraesCS6B01G353100 chr2A 83.189 577 59 12 1679 2229 687004882 687004318 1.310000e-135 494.0
29 TraesCS6B01G353100 chr1B 94.615 260 14 0 4995 5254 457467944 457467685 2.280000e-108 403.0
30 TraesCS6B01G353100 chr1B 83.732 209 33 1 3385 3593 360872285 360872078 4.150000e-46 196.0
31 TraesCS6B01G353100 chr3A 93.307 254 16 1 4993 5246 269165984 269166236 1.790000e-99 374.0
32 TraesCS6B01G353100 chr3A 85.824 261 37 0 4994 5254 748204983 748204723 1.440000e-70 278.0
33 TraesCS6B01G353100 chr3A 85.441 261 38 0 4994 5254 748661108 748660848 6.700000e-69 272.0
34 TraesCS6B01G353100 chr3A 85.441 261 38 0 4994 5254 748740699 748740439 6.700000e-69 272.0
35 TraesCS6B01G353100 chr5B 87.452 263 32 1 4992 5254 576871741 576872002 8.550000e-78 302.0
36 TraesCS6B01G353100 chr4A 84.211 209 32 1 3385 3593 707065271 707065478 8.920000e-48 202.0
37 TraesCS6B01G353100 chr1A 83.886 211 32 2 3385 3595 561151158 561150950 3.210000e-47 200.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G353100 chr6B 618935498 618940751 5253 False 9703.000000 9703 100.000000 1 5254 1 chr6B.!!$F2 5253
1 TraesCS6B01G353100 chr6A 556526489 556530862 4373 False 2888.000000 5083 91.486000 700 4994 2 chr6A.!!$F1 4294
2 TraesCS6B01G353100 chr6D 411610270 411614859 4589 False 1917.666667 2795 91.446333 699 4967 3 chr6D.!!$F1 4268
3 TraesCS6B01G353100 chr6D 446602929 446603586 657 True 1013.000000 1013 94.545000 2 655 1 chr6D.!!$R2 653
4 TraesCS6B01G353100 chr7D 474489738 474490393 655 True 1059.000000 1059 95.903000 2 654 1 chr7D.!!$R1 652
5 TraesCS6B01G353100 chr7D 621163375 621164034 659 False 1050.000000 1050 95.461000 2 657 1 chr7D.!!$F1 655
6 TraesCS6B01G353100 chr1D 445569220 445569881 661 False 1046.000000 1046 95.331000 2 658 1 chr1D.!!$F1 656
7 TraesCS6B01G353100 chr2B 708546871 708547527 656 False 1027.000000 1027 94.977000 2 655 1 chr2B.!!$F2 653
8 TraesCS6B01G353100 chr2B 643126181 643126840 659 False 1005.000000 1005 94.251000 2 657 1 chr2B.!!$F1 655
9 TraesCS6B01G353100 chr2B 652619047 652620759 1712 True 511.000000 804 84.987667 978 3818 3 chr2B.!!$R1 2840
10 TraesCS6B01G353100 chr4B 483941202 483941858 656 False 1022.000000 1022 94.825000 2 655 1 chr4B.!!$F1 653
11 TraesCS6B01G353100 chr7B 389094393 389095054 661 False 1009.000000 1009 94.260000 2 660 1 chr7B.!!$F2 658
12 TraesCS6B01G353100 chr7B 603840110 603840770 660 False 1005.000000 1005 94.268000 2 657 1 chr7B.!!$F3 655
13 TraesCS6B01G353100 chr2D 545940413 545943806 3393 True 644.250000 966 83.500250 963 4262 4 chr2D.!!$R1 3299
14 TraesCS6B01G353100 chr2A 687002134 687004882 2748 True 743.666667 913 82.951667 1679 4262 3 chr2A.!!$R1 2583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
660 666 0.036306 AACCAAACACGCCCTAGGAG 59.964 55.0 11.48 6.5 0.00 3.69 F
1719 1784 0.391661 TCCGCATGTCTCTTTGAGGC 60.392 55.0 0.00 0.0 34.49 4.70 F
3546 4120 0.594602 TGCTGATGCTTGTGCTCAAC 59.405 50.0 0.00 0.0 40.48 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2258 2467 0.322187 AACCATACGAGCAACCCCAC 60.322 55.0 0.0 0.0 0.00 4.61 R
3715 4320 0.319083 ACGACCATACTCGCCAAACA 59.681 50.0 0.0 0.0 37.15 2.83 R
4743 5459 0.036388 GGTTCCTTCAGCATCACGGA 60.036 55.0 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
87 88 0.627469 ATCAGGGTTGGGCCACCTAT 60.627 55.000 14.86 7.19 39.65 2.57
366 369 7.442364 TGCTAATTGATGCTCTGTTTATACTCC 59.558 37.037 0.00 0.00 0.00 3.85
402 405 2.280797 GCTGCCGAAGTGTGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
431 434 4.288626 TCACCAACTAGCCAAAGAGGTTAT 59.711 41.667 0.00 0.00 40.61 1.89
486 489 4.650972 TGCCTTAGGTTTGTGGACTAAT 57.349 40.909 0.00 0.00 0.00 1.73
493 496 5.435686 AGGTTTGTGGACTAATATGCAGA 57.564 39.130 0.00 0.00 0.00 4.26
660 666 0.036306 AACCAAACACGCCCTAGGAG 59.964 55.000 11.48 6.50 0.00 3.69
661 667 1.125711 ACCAAACACGCCCTAGGAGT 61.126 55.000 11.48 7.23 35.79 3.85
662 668 0.899720 CCAAACACGCCCTAGGAGTA 59.100 55.000 11.48 0.00 33.08 2.59
663 669 1.134788 CCAAACACGCCCTAGGAGTAG 60.135 57.143 11.48 7.60 33.08 2.57
664 670 1.822990 CAAACACGCCCTAGGAGTAGA 59.177 52.381 11.48 0.00 33.08 2.59
665 671 1.765230 AACACGCCCTAGGAGTAGAG 58.235 55.000 11.48 0.00 33.08 2.43
666 672 0.917533 ACACGCCCTAGGAGTAGAGA 59.082 55.000 11.48 0.00 33.08 3.10
667 673 1.495574 ACACGCCCTAGGAGTAGAGAT 59.504 52.381 11.48 0.00 33.08 2.75
668 674 1.883275 CACGCCCTAGGAGTAGAGATG 59.117 57.143 11.48 0.00 33.08 2.90
669 675 1.775459 ACGCCCTAGGAGTAGAGATGA 59.225 52.381 11.48 0.00 33.08 2.92
670 676 2.175069 ACGCCCTAGGAGTAGAGATGAA 59.825 50.000 11.48 0.00 33.08 2.57
671 677 2.817258 CGCCCTAGGAGTAGAGATGAAG 59.183 54.545 11.48 0.00 0.00 3.02
672 678 3.497048 CGCCCTAGGAGTAGAGATGAAGA 60.497 52.174 11.48 0.00 0.00 2.87
673 679 3.824443 GCCCTAGGAGTAGAGATGAAGAC 59.176 52.174 11.48 0.00 0.00 3.01
674 680 4.069304 CCCTAGGAGTAGAGATGAAGACG 58.931 52.174 11.48 0.00 0.00 4.18
675 681 4.445162 CCCTAGGAGTAGAGATGAAGACGT 60.445 50.000 11.48 0.00 0.00 4.34
676 682 4.513692 CCTAGGAGTAGAGATGAAGACGTG 59.486 50.000 1.05 0.00 0.00 4.49
677 683 3.283751 AGGAGTAGAGATGAAGACGTGG 58.716 50.000 0.00 0.00 0.00 4.94
678 684 3.018149 GGAGTAGAGATGAAGACGTGGT 58.982 50.000 0.00 0.00 0.00 4.16
679 685 3.181495 GGAGTAGAGATGAAGACGTGGTG 60.181 52.174 0.00 0.00 0.00 4.17
680 686 2.755655 AGTAGAGATGAAGACGTGGTGG 59.244 50.000 0.00 0.00 0.00 4.61
681 687 1.924731 AGAGATGAAGACGTGGTGGA 58.075 50.000 0.00 0.00 0.00 4.02
682 688 2.461695 AGAGATGAAGACGTGGTGGAT 58.538 47.619 0.00 0.00 0.00 3.41
683 689 2.428890 AGAGATGAAGACGTGGTGGATC 59.571 50.000 0.00 0.00 0.00 3.36
684 690 1.482593 AGATGAAGACGTGGTGGATCC 59.517 52.381 4.20 4.20 0.00 3.36
685 691 0.541863 ATGAAGACGTGGTGGATCCC 59.458 55.000 9.90 0.00 34.77 3.85
686 692 1.153628 GAAGACGTGGTGGATCCCG 60.154 63.158 9.90 7.99 36.47 5.14
687 693 1.601419 GAAGACGTGGTGGATCCCGA 61.601 60.000 9.90 0.00 35.16 5.14
688 694 1.885163 AAGACGTGGTGGATCCCGAC 61.885 60.000 9.90 5.90 35.16 4.79
689 695 3.366739 GACGTGGTGGATCCCGACC 62.367 68.421 13.32 13.32 35.16 4.79
690 696 4.157120 CGTGGTGGATCCCGACCC 62.157 72.222 16.68 8.89 33.75 4.46
691 697 3.006728 GTGGTGGATCCCGACCCA 61.007 66.667 16.68 11.14 34.77 4.51
692 698 2.687200 TGGTGGATCCCGACCCAG 60.687 66.667 16.68 0.00 32.28 4.45
693 699 3.480133 GGTGGATCCCGACCCAGG 61.480 72.222 9.90 0.00 32.28 4.45
707 713 3.759618 CGACCCAGGGCTTGTAATAAAAA 59.240 43.478 4.91 0.00 0.00 1.94
746 752 3.436700 AACACACAAAGCCTTGCTAAC 57.563 42.857 0.00 0.00 38.25 2.34
760 766 4.319984 CCTTGCTAACGAAAACCCACTAAC 60.320 45.833 0.00 0.00 0.00 2.34
765 771 6.035217 GCTAACGAAAACCCACTAACAAAAA 58.965 36.000 0.00 0.00 0.00 1.94
887 897 3.365265 CCAACCTTGACCGCAGCC 61.365 66.667 0.00 0.00 0.00 4.85
924 934 3.408853 TCGCCGAGGAGGGAGAGA 61.409 66.667 0.00 0.00 41.48 3.10
967 979 3.438812 CCCCCAAATCCCTCCCCC 61.439 72.222 0.00 0.00 0.00 5.40
969 981 2.252898 CCCCAAATCCCTCCCCCAA 61.253 63.158 0.00 0.00 0.00 4.12
1044 1056 3.774959 GATGGACATCGACCGCGCT 62.775 63.158 5.56 0.00 37.46 5.92
1228 1244 1.313812 ATCACCACCTCGACGACTCC 61.314 60.000 0.00 0.00 0.00 3.85
1292 1308 4.675063 ATTTTGGATAGGGGTTCTGTGT 57.325 40.909 0.00 0.00 0.00 3.72
1395 1412 3.508762 CAGTGATCTGCTGAAATTTGGC 58.491 45.455 10.92 0.31 36.12 4.52
1471 1521 6.002082 TCTACACTGCTTACTTAGTGACTGA 58.998 40.000 10.95 0.00 45.46 3.41
1477 1527 8.988934 CACTGCTTACTTAGTGACTGAAAATTA 58.011 33.333 0.00 0.00 45.46 1.40
1481 1531 8.504005 GCTTACTTAGTGACTGAAAATTAGCAA 58.496 33.333 0.00 0.00 0.00 3.91
1511 1561 8.303876 ACATGTTTAATGTTACCTGTGATTTCC 58.696 33.333 0.00 0.00 0.00 3.13
1618 1683 2.229543 TGCTGCCACACATTTTGAGATC 59.770 45.455 0.00 0.00 0.00 2.75
1663 1728 8.605325 TTATTACCTACTTCTAACTTGCCTCT 57.395 34.615 0.00 0.00 0.00 3.69
1664 1729 6.930068 TTACCTACTTCTAACTTGCCTCTT 57.070 37.500 0.00 0.00 0.00 2.85
1665 1730 5.827326 ACCTACTTCTAACTTGCCTCTTT 57.173 39.130 0.00 0.00 0.00 2.52
1666 1731 6.189036 ACCTACTTCTAACTTGCCTCTTTT 57.811 37.500 0.00 0.00 0.00 2.27
1719 1784 0.391661 TCCGCATGTCTCTTTGAGGC 60.392 55.000 0.00 0.00 34.49 4.70
1788 1855 3.586618 AGATGAGAATAGGCTTCCCCATC 59.413 47.826 0.00 1.94 35.39 3.51
1937 2004 3.751175 GTGTTGTAAGGCAGCAGATACAA 59.249 43.478 11.00 11.00 38.97 2.41
2098 2170 3.576078 ATCGTTCATTTCCATGGGCTA 57.424 42.857 13.02 0.00 0.00 3.93
2099 2171 3.576078 TCGTTCATTTCCATGGGCTAT 57.424 42.857 13.02 0.00 0.00 2.97
2140 2227 2.234661 TGGACTGCAGTAGGATCACTTG 59.765 50.000 21.73 0.00 0.00 3.16
2159 2246 4.274950 ACTTGGTTTTAACATGAGGTCGTG 59.725 41.667 0.00 0.00 38.76 4.35
2226 2432 2.554032 GAGTGGCTTACTTGCATGTGTT 59.446 45.455 15.08 0.00 40.53 3.32
2258 2467 4.999950 ACACTCTTGATTCCTTAACTGCAG 59.000 41.667 13.48 13.48 0.00 4.41
2688 2912 2.827755 TCTGAGGGGTAAGCACACATA 58.172 47.619 0.00 0.00 0.00 2.29
2767 2994 5.705609 TTTCCATGCTTGACTTCCTTTAC 57.294 39.130 0.22 0.00 0.00 2.01
2784 3011 4.021192 CCTTTACTACCGTGTTGGGACTTA 60.021 45.833 0.00 0.00 44.64 2.24
2786 3013 2.318908 ACTACCGTGTTGGGACTTACA 58.681 47.619 0.00 0.00 44.64 2.41
2790 3017 1.265905 CCGTGTTGGGACTTACAAAGC 59.734 52.381 0.00 0.00 0.00 3.51
2991 3267 2.558359 AGCTGATGTACCTTTGGTTTGC 59.442 45.455 0.00 0.00 37.09 3.68
3057 3333 4.201990 GCATCCCAGCAAATAACAGAAGAG 60.202 45.833 0.00 0.00 0.00 2.85
3185 3461 8.481492 AATTGCCATCACCATCTTTCATAATA 57.519 30.769 0.00 0.00 0.00 0.98
3186 3462 7.894753 TTGCCATCACCATCTTTCATAATAA 57.105 32.000 0.00 0.00 0.00 1.40
3347 3921 9.589111 GTACCTTCTAAACTTCCTTATTCTCAG 57.411 37.037 0.00 0.00 0.00 3.35
3352 3926 9.635520 TTCTAAACTTCCTTATTCTCAGTAACG 57.364 33.333 0.00 0.00 0.00 3.18
3365 3939 3.019564 TCAGTAACGTACTAAGCCCTCC 58.980 50.000 0.00 0.00 37.23 4.30
3374 3948 7.186570 ACGTACTAAGCCCTCCTTTAATTAA 57.813 36.000 0.00 0.00 34.95 1.40
3487 4061 9.178758 GAGTATGTCCTGTTCATCCTTTTAAAT 57.821 33.333 0.00 0.00 0.00 1.40
3546 4120 0.594602 TGCTGATGCTTGTGCTCAAC 59.405 50.000 0.00 0.00 40.48 3.18
3572 4150 9.973450 CTTGACATCTAACTGTAATAGTAGCAT 57.027 33.333 0.00 0.00 39.18 3.79
3595 4173 7.853524 CATTGTATGCTCTCTTCTCAGAAATC 58.146 38.462 0.00 0.00 0.00 2.17
3604 4182 7.335422 GCTCTCTTCTCAGAAATCAAATTACCA 59.665 37.037 0.00 0.00 0.00 3.25
3665 4270 4.806247 CACAAGTAGTTACCATAGCTCAGC 59.194 45.833 0.00 0.00 0.00 4.26
3677 4282 4.445453 CATAGCTCAGCAACTGTAATGGA 58.555 43.478 0.00 0.00 32.61 3.41
3701 4306 7.934120 GGATCCGAGGCTAGCATTATATATTTT 59.066 37.037 18.24 0.00 0.00 1.82
3717 4322 9.989296 TTATATATTTTATATGGCCAGGCTTGT 57.011 29.630 13.05 0.00 0.00 3.16
3733 4338 1.393539 CTTGTTTGGCGAGTATGGTCG 59.606 52.381 0.00 0.00 43.08 4.79
3805 4420 1.227234 GCCAAAACAGTGCCACACC 60.227 57.895 0.00 0.00 34.49 4.16
3806 4421 1.954362 GCCAAAACAGTGCCACACCA 61.954 55.000 0.00 0.00 34.49 4.17
3807 4422 0.534412 CCAAAACAGTGCCACACCAA 59.466 50.000 0.00 0.00 34.49 3.67
3809 4424 2.270047 CAAAACAGTGCCACACCAAAG 58.730 47.619 0.00 0.00 34.49 2.77
3810 4425 0.175531 AAACAGTGCCACACCAAAGC 59.824 50.000 0.00 0.00 34.49 3.51
3811 4426 0.969917 AACAGTGCCACACCAAAGCA 60.970 50.000 0.00 0.00 34.49 3.91
3812 4427 0.756442 ACAGTGCCACACCAAAGCAT 60.756 50.000 0.00 0.00 39.04 3.79
3814 4429 1.200716 CAGTGCCACACCAAAGCATAG 59.799 52.381 0.00 0.00 39.04 2.23
3819 4437 3.133721 TGCCACACCAAAGCATAGTTTTT 59.866 39.130 0.00 0.00 0.00 1.94
3820 4438 3.494251 GCCACACCAAAGCATAGTTTTTG 59.506 43.478 0.00 0.00 34.79 2.44
3824 4442 5.809562 CACACCAAAGCATAGTTTTTGTTGA 59.190 36.000 2.28 0.00 32.90 3.18
3827 4445 6.925165 CACCAAAGCATAGTTTTTGTTGATCT 59.075 34.615 0.00 0.00 30.94 2.75
3868 4488 8.988064 TCTCTACATGTCTAACTTGTTGATTC 57.012 34.615 0.00 0.00 37.37 2.52
3869 4489 8.585018 TCTCTACATGTCTAACTTGTTGATTCA 58.415 33.333 0.00 0.00 37.37 2.57
3870 4490 8.763049 TCTACATGTCTAACTTGTTGATTCAG 57.237 34.615 0.00 0.00 37.59 3.02
3872 4492 9.208022 CTACATGTCTAACTTGTTGATTCAGAA 57.792 33.333 0.00 0.00 37.59 3.02
3874 4494 8.562892 ACATGTCTAACTTGTTGATTCAGAAAG 58.437 33.333 0.00 8.21 33.38 2.62
3875 4495 8.562892 CATGTCTAACTTGTTGATTCAGAAAGT 58.437 33.333 9.19 9.19 32.60 2.66
3924 4548 8.035984 AGTAATTACTTGTAGAGAAACTCTGCC 58.964 37.037 12.50 3.27 41.40 4.85
3992 4637 4.767409 GGAAATATTCCTGGGTATTGGAGC 59.233 45.833 1.86 0.00 46.57 4.70
4014 4660 5.782331 AGCTATGATTCTGCTGGGAAGTATA 59.218 40.000 0.00 0.00 35.54 1.47
4026 4672 6.096705 TGCTGGGAAGTATAATGACCATTTTG 59.903 38.462 0.17 0.00 32.50 2.44
4041 4695 8.231692 TGACCATTTTGTTGACTTCTTGAATA 57.768 30.769 0.00 0.00 0.00 1.75
4076 4731 2.375509 AGAACTGGGACCAAAAGTAGGG 59.624 50.000 0.00 0.00 0.00 3.53
4086 4741 5.299531 GGACCAAAAGTAGGGCAATTCTATC 59.700 44.000 0.00 0.00 35.15 2.08
4093 4748 1.212935 AGGGCAATTCTATCGGCAGTT 59.787 47.619 0.00 0.00 0.00 3.16
4094 4749 2.024414 GGGCAATTCTATCGGCAGTTT 58.976 47.619 0.00 0.00 0.00 2.66
4100 4755 5.523916 GCAATTCTATCGGCAGTTTCTCTTA 59.476 40.000 0.00 0.00 0.00 2.10
4127 4782 4.847757 CAGTCAGCAACGTTATTGACATTG 59.152 41.667 30.11 22.01 41.74 2.82
4128 4783 4.515191 AGTCAGCAACGTTATTGACATTGT 59.485 37.500 30.11 16.58 41.74 2.71
4345 5000 7.057149 TCTCTGTATTTAGTTTAAAGCGCAC 57.943 36.000 11.47 0.00 0.00 5.34
4360 5015 1.981533 GCGCACTGAGCAGAAAATTTC 59.018 47.619 0.30 0.00 46.13 2.17
4377 5032 9.171877 AGAAAATTTCCATGTTAGATCTGTCTC 57.828 33.333 5.18 0.00 35.87 3.36
4465 5121 6.170506 GTTGTCAGGTTTAGGTGATGTATGA 58.829 40.000 0.00 0.00 0.00 2.15
4468 5124 6.170506 GTCAGGTTTAGGTGATGTATGAACA 58.829 40.000 0.00 0.00 40.69 3.18
4524 5233 2.814336 GGGAGTCATTCACAACTCAACC 59.186 50.000 5.04 0.00 42.99 3.77
4616 5329 6.535508 GGTTTTGTATGGTTGCAAAGTAAACA 59.464 34.615 0.00 0.00 38.43 2.83
4629 5342 6.476380 TGCAAAGTAAACAAATGAAAGCTCTG 59.524 34.615 0.00 0.00 0.00 3.35
4660 5373 7.230849 ACATGATACATTGTCCACAAAATGT 57.769 32.000 0.00 6.32 46.15 2.71
4743 5459 7.283807 AGTTCCAAAGTAGGATTTTTAACACGT 59.716 33.333 0.00 0.00 37.56 4.49
4845 5561 6.096846 AGGTGGTGATATCAACAATTAAAGCC 59.903 38.462 24.74 18.48 46.28 4.35
4949 5665 6.582295 AGCGTGATTGCACAATTACTTTTTAG 59.418 34.615 14.10 2.04 45.41 1.85
4968 5684 6.814954 TTTAGGATAAGCTTGAGAGTCCAT 57.185 37.500 9.86 0.00 0.00 3.41
4973 5689 6.041523 AGGATAAGCTTGAGAGTCCATTAGAC 59.958 42.308 9.86 0.00 46.71 2.59
5007 5723 4.966965 TTTCACTTACGCTTTGTTTGGA 57.033 36.364 0.00 0.00 0.00 3.53
5008 5724 5.508200 TTTCACTTACGCTTTGTTTGGAT 57.492 34.783 0.00 0.00 0.00 3.41
5009 5725 4.481930 TCACTTACGCTTTGTTTGGATG 57.518 40.909 0.00 0.00 0.00 3.51
5010 5726 3.880490 TCACTTACGCTTTGTTTGGATGT 59.120 39.130 0.00 0.00 0.00 3.06
5011 5727 4.024387 TCACTTACGCTTTGTTTGGATGTC 60.024 41.667 0.00 0.00 0.00 3.06
5012 5728 3.252458 ACTTACGCTTTGTTTGGATGTCC 59.748 43.478 0.00 0.00 0.00 4.02
5013 5729 0.591170 ACGCTTTGTTTGGATGTCCG 59.409 50.000 0.00 0.00 39.43 4.79
5014 5730 0.591170 CGCTTTGTTTGGATGTCCGT 59.409 50.000 0.00 0.00 39.43 4.69
5015 5731 1.801771 CGCTTTGTTTGGATGTCCGTA 59.198 47.619 0.00 0.00 39.43 4.02
5016 5732 2.418628 CGCTTTGTTTGGATGTCCGTAT 59.581 45.455 0.00 0.00 39.43 3.06
5017 5733 3.119990 CGCTTTGTTTGGATGTCCGTATT 60.120 43.478 0.00 0.00 39.43 1.89
5018 5734 4.165779 GCTTTGTTTGGATGTCCGTATTG 58.834 43.478 0.00 0.00 39.43 1.90
5019 5735 4.732784 CTTTGTTTGGATGTCCGTATTGG 58.267 43.478 0.00 0.00 39.43 3.16
5039 5755 3.217626 GGAGCACTCCCTATTGAATTGG 58.782 50.000 5.30 0.00 43.94 3.16
5040 5756 3.117888 GGAGCACTCCCTATTGAATTGGA 60.118 47.826 7.23 1.99 43.94 3.53
5041 5757 4.526970 GAGCACTCCCTATTGAATTGGAA 58.473 43.478 7.23 0.00 0.00 3.53
5042 5758 5.134725 AGCACTCCCTATTGAATTGGAAT 57.865 39.130 7.23 0.00 0.00 3.01
5043 5759 6.266131 AGCACTCCCTATTGAATTGGAATA 57.734 37.500 7.23 0.00 0.00 1.75
5044 5760 6.302269 AGCACTCCCTATTGAATTGGAATAG 58.698 40.000 7.23 4.61 34.44 1.73
5045 5761 6.101734 AGCACTCCCTATTGAATTGGAATAGA 59.898 38.462 7.23 0.00 36.03 1.98
5046 5762 6.772716 GCACTCCCTATTGAATTGGAATAGAA 59.227 38.462 7.23 3.73 36.03 2.10
5047 5763 7.449704 GCACTCCCTATTGAATTGGAATAGAAT 59.550 37.037 7.23 0.00 36.03 2.40
5048 5764 9.359653 CACTCCCTATTGAATTGGAATAGAATT 57.640 33.333 7.23 0.00 36.03 2.17
5049 5765 9.579932 ACTCCCTATTGAATTGGAATAGAATTC 57.420 33.333 7.23 0.00 39.36 2.17
5050 5766 9.804977 CTCCCTATTGAATTGGAATAGAATTCT 57.195 33.333 13.56 13.56 39.55 2.40
5062 5778 9.618890 TTGGAATAGAATTCTAATTCAGTGAGG 57.381 33.333 18.79 0.00 45.59 3.86
5063 5779 8.992349 TGGAATAGAATTCTAATTCAGTGAGGA 58.008 33.333 18.79 0.00 45.59 3.71
5064 5780 9.838339 GGAATAGAATTCTAATTCAGTGAGGAA 57.162 33.333 18.79 0.00 45.59 3.36
5068 5784 8.558973 AGAATTCTAATTCAGTGAGGAAACTG 57.441 34.615 6.06 0.00 45.59 3.16
5078 5794 3.809832 AGTGAGGAAACTGAAATGACACG 59.190 43.478 0.00 0.00 44.43 4.49
5079 5795 3.807622 GTGAGGAAACTGAAATGACACGA 59.192 43.478 0.00 0.00 44.43 4.35
5080 5796 4.272504 GTGAGGAAACTGAAATGACACGAA 59.727 41.667 0.00 0.00 44.43 3.85
5081 5797 5.049405 GTGAGGAAACTGAAATGACACGAAT 60.049 40.000 0.00 0.00 44.43 3.34
5082 5798 6.147164 GTGAGGAAACTGAAATGACACGAATA 59.853 38.462 0.00 0.00 44.43 1.75
5083 5799 6.147164 TGAGGAAACTGAAATGACACGAATAC 59.853 38.462 0.00 0.00 44.43 1.89
5084 5800 5.120208 AGGAAACTGAAATGACACGAATACG 59.880 40.000 0.00 0.00 41.13 3.06
5085 5801 5.119588 GGAAACTGAAATGACACGAATACGA 59.880 40.000 0.00 0.00 42.66 3.43
5086 5802 6.347079 GGAAACTGAAATGACACGAATACGAA 60.347 38.462 0.00 0.00 42.66 3.85
5087 5803 6.721571 AACTGAAATGACACGAATACGAAT 57.278 33.333 0.00 0.00 42.66 3.34
5088 5804 6.721571 ACTGAAATGACACGAATACGAATT 57.278 33.333 0.00 0.00 42.66 2.17
5089 5805 6.762108 ACTGAAATGACACGAATACGAATTC 58.238 36.000 0.00 0.00 42.66 2.17
5100 5816 5.526010 GAATACGAATTCGACTGTTTGGT 57.474 39.130 33.05 10.69 43.02 3.67
5101 5817 5.923665 GAATACGAATTCGACTGTTTGGTT 58.076 37.500 33.05 9.96 43.02 3.67
5102 5818 3.602390 ACGAATTCGACTGTTTGGTTG 57.398 42.857 33.05 0.71 43.02 3.77
5103 5819 2.940410 ACGAATTCGACTGTTTGGTTGT 59.060 40.909 33.05 3.85 43.02 3.32
5104 5820 3.375922 ACGAATTCGACTGTTTGGTTGTT 59.624 39.130 33.05 3.39 43.02 2.83
5105 5821 3.966218 CGAATTCGACTGTTTGGTTGTTC 59.034 43.478 23.29 0.00 43.02 3.18
5106 5822 4.495019 CGAATTCGACTGTTTGGTTGTTCA 60.495 41.667 23.29 0.00 43.02 3.18
5107 5823 3.750639 TTCGACTGTTTGGTTGTTCAC 57.249 42.857 0.00 0.00 0.00 3.18
5108 5824 2.980568 TCGACTGTTTGGTTGTTCACT 58.019 42.857 0.00 0.00 0.00 3.41
5109 5825 2.675844 TCGACTGTTTGGTTGTTCACTG 59.324 45.455 0.00 0.00 0.00 3.66
5110 5826 2.675844 CGACTGTTTGGTTGTTCACTGA 59.324 45.455 0.00 0.00 0.00 3.41
5111 5827 3.126171 CGACTGTTTGGTTGTTCACTGAA 59.874 43.478 0.00 0.00 0.00 3.02
5112 5828 4.201910 CGACTGTTTGGTTGTTCACTGAAT 60.202 41.667 0.00 0.00 0.00 2.57
5113 5829 5.650543 GACTGTTTGGTTGTTCACTGAATT 58.349 37.500 0.00 0.00 0.00 2.17
5114 5830 5.410067 ACTGTTTGGTTGTTCACTGAATTG 58.590 37.500 0.00 0.00 0.00 2.32
5115 5831 5.184864 ACTGTTTGGTTGTTCACTGAATTGA 59.815 36.000 0.00 0.00 0.00 2.57
5116 5832 5.406649 TGTTTGGTTGTTCACTGAATTGAC 58.593 37.500 0.00 0.00 0.00 3.18
5117 5833 4.647424 TTGGTTGTTCACTGAATTGACC 57.353 40.909 11.44 11.44 0.00 4.02
5118 5834 2.955660 TGGTTGTTCACTGAATTGACCC 59.044 45.455 14.00 4.78 0.00 4.46
5119 5835 3.222603 GGTTGTTCACTGAATTGACCCT 58.777 45.455 0.00 0.00 0.00 4.34
5120 5836 3.636764 GGTTGTTCACTGAATTGACCCTT 59.363 43.478 0.00 0.00 0.00 3.95
5121 5837 4.499696 GGTTGTTCACTGAATTGACCCTTG 60.500 45.833 0.00 0.00 0.00 3.61
5122 5838 4.163441 TGTTCACTGAATTGACCCTTGA 57.837 40.909 0.00 0.00 0.00 3.02
5123 5839 4.531854 TGTTCACTGAATTGACCCTTGAA 58.468 39.130 0.00 0.00 0.00 2.69
5124 5840 4.952957 TGTTCACTGAATTGACCCTTGAAA 59.047 37.500 0.00 0.00 0.00 2.69
5125 5841 5.598005 TGTTCACTGAATTGACCCTTGAAAT 59.402 36.000 0.00 0.00 0.00 2.17
5126 5842 5.710513 TCACTGAATTGACCCTTGAAATG 57.289 39.130 0.00 0.00 0.00 2.32
5127 5843 4.022068 TCACTGAATTGACCCTTGAAATGC 60.022 41.667 0.00 0.00 0.00 3.56
5128 5844 3.259123 ACTGAATTGACCCTTGAAATGCC 59.741 43.478 0.00 0.00 0.00 4.40
5129 5845 3.509442 TGAATTGACCCTTGAAATGCCT 58.491 40.909 0.00 0.00 0.00 4.75
5130 5846 3.903090 TGAATTGACCCTTGAAATGCCTT 59.097 39.130 0.00 0.00 0.00 4.35
5131 5847 4.347583 TGAATTGACCCTTGAAATGCCTTT 59.652 37.500 0.00 0.00 0.00 3.11
5132 5848 3.749665 TTGACCCTTGAAATGCCTTTG 57.250 42.857 0.00 0.00 0.00 2.77
5133 5849 2.956132 TGACCCTTGAAATGCCTTTGA 58.044 42.857 0.00 0.00 0.00 2.69
5134 5850 2.892852 TGACCCTTGAAATGCCTTTGAG 59.107 45.455 0.00 0.00 0.00 3.02
5135 5851 2.232208 GACCCTTGAAATGCCTTTGAGG 59.768 50.000 0.00 0.00 38.80 3.86
5136 5852 2.250924 CCCTTGAAATGCCTTTGAGGT 58.749 47.619 10.56 0.00 37.80 3.85
5137 5853 2.634453 CCCTTGAAATGCCTTTGAGGTT 59.366 45.455 10.56 0.00 37.80 3.50
5138 5854 3.071457 CCCTTGAAATGCCTTTGAGGTTT 59.929 43.478 10.56 0.00 37.80 3.27
5139 5855 4.309933 CCTTGAAATGCCTTTGAGGTTTC 58.690 43.478 0.00 0.46 37.80 2.78
5140 5856 4.202243 CCTTGAAATGCCTTTGAGGTTTCA 60.202 41.667 8.05 8.05 38.09 2.69
5141 5857 5.350504 TTGAAATGCCTTTGAGGTTTCAA 57.649 34.783 15.73 15.73 42.79 2.69
5142 5858 5.549742 TGAAATGCCTTTGAGGTTTCAAT 57.450 34.783 9.17 0.00 42.60 2.57
5143 5859 6.662865 TGAAATGCCTTTGAGGTTTCAATA 57.337 33.333 9.17 0.00 42.60 1.90
5144 5860 6.454795 TGAAATGCCTTTGAGGTTTCAATAC 58.545 36.000 9.17 0.00 42.60 1.89
5145 5861 5.405935 AATGCCTTTGAGGTTTCAATACC 57.594 39.130 0.00 0.00 42.60 2.73
5146 5862 3.838565 TGCCTTTGAGGTTTCAATACCA 58.161 40.909 0.00 0.00 42.60 3.25
5147 5863 4.219115 TGCCTTTGAGGTTTCAATACCAA 58.781 39.130 0.00 0.00 42.60 3.67
5148 5864 4.651503 TGCCTTTGAGGTTTCAATACCAAA 59.348 37.500 0.00 0.00 42.60 3.28
5149 5865 5.306678 TGCCTTTGAGGTTTCAATACCAAAT 59.693 36.000 0.00 0.00 42.60 2.32
5150 5866 5.869344 GCCTTTGAGGTTTCAATACCAAATC 59.131 40.000 0.00 0.00 42.60 2.17
5151 5867 6.295292 GCCTTTGAGGTTTCAATACCAAATCT 60.295 38.462 0.00 0.00 42.60 2.40
5152 5868 7.670364 CCTTTGAGGTTTCAATACCAAATCTT 58.330 34.615 0.00 0.00 42.60 2.40
5153 5869 7.599998 CCTTTGAGGTTTCAATACCAAATCTTG 59.400 37.037 0.00 0.00 42.60 3.02
5154 5870 7.595819 TTGAGGTTTCAATACCAAATCTTGT 57.404 32.000 0.00 0.00 40.82 3.16
5155 5871 7.595819 TGAGGTTTCAATACCAAATCTTGTT 57.404 32.000 0.00 0.00 40.82 2.83
5156 5872 8.017418 TGAGGTTTCAATACCAAATCTTGTTT 57.983 30.769 0.00 0.00 40.82 2.83
5157 5873 7.925483 TGAGGTTTCAATACCAAATCTTGTTTG 59.075 33.333 0.00 0.00 40.82 2.93
5176 5892 5.930837 TTTGGATGACAAACTTTGGACTT 57.069 34.783 6.47 0.00 43.81 3.01
5177 5893 4.916983 TGGATGACAAACTTTGGACTTG 57.083 40.909 6.47 0.00 34.12 3.16
5178 5894 3.068024 TGGATGACAAACTTTGGACTTGC 59.932 43.478 6.47 4.62 34.12 4.01
5179 5895 3.068024 GGATGACAAACTTTGGACTTGCA 59.932 43.478 6.47 0.00 34.12 4.08
5180 5896 4.262164 GGATGACAAACTTTGGACTTGCAT 60.262 41.667 6.47 0.00 34.12 3.96
5181 5897 5.048083 GGATGACAAACTTTGGACTTGCATA 60.048 40.000 6.47 0.00 34.12 3.14
5182 5898 5.437289 TGACAAACTTTGGACTTGCATAG 57.563 39.130 6.47 0.00 34.12 2.23
5183 5899 4.229876 GACAAACTTTGGACTTGCATAGC 58.770 43.478 6.47 0.00 34.12 2.97
5184 5900 3.891366 ACAAACTTTGGACTTGCATAGCT 59.109 39.130 6.47 0.00 34.12 3.32
5185 5901 5.070001 ACAAACTTTGGACTTGCATAGCTA 58.930 37.500 6.47 0.00 34.12 3.32
5186 5902 5.048713 ACAAACTTTGGACTTGCATAGCTAC 60.049 40.000 0.00 0.00 34.12 3.58
5187 5903 4.286297 ACTTTGGACTTGCATAGCTACA 57.714 40.909 0.00 0.00 0.00 2.74
5188 5904 4.848357 ACTTTGGACTTGCATAGCTACAT 58.152 39.130 0.00 0.00 0.00 2.29
5189 5905 5.256474 ACTTTGGACTTGCATAGCTACATT 58.744 37.500 0.00 0.00 0.00 2.71
5190 5906 6.414732 ACTTTGGACTTGCATAGCTACATTA 58.585 36.000 0.00 0.00 0.00 1.90
5191 5907 6.540189 ACTTTGGACTTGCATAGCTACATTAG 59.460 38.462 0.00 0.00 0.00 1.73
5237 5953 9.142515 TGTACATGATTGAAAAATGAAATCTGC 57.857 29.630 0.00 0.00 32.63 4.26
5238 5954 9.362539 GTACATGATTGAAAAATGAAATCTGCT 57.637 29.630 0.00 0.00 32.63 4.24
5239 5955 8.475331 ACATGATTGAAAAATGAAATCTGCTC 57.525 30.769 0.00 0.00 32.63 4.26
5240 5956 8.092068 ACATGATTGAAAAATGAAATCTGCTCA 58.908 29.630 0.00 0.00 32.63 4.26
5241 5957 7.878477 TGATTGAAAAATGAAATCTGCTCAC 57.122 32.000 0.00 0.00 32.63 3.51
5242 5958 7.435305 TGATTGAAAAATGAAATCTGCTCACA 58.565 30.769 0.00 0.00 32.63 3.58
5243 5959 8.092068 TGATTGAAAAATGAAATCTGCTCACAT 58.908 29.630 0.00 0.00 32.63 3.21
5244 5960 7.646446 TTGAAAAATGAAATCTGCTCACATG 57.354 32.000 0.00 0.00 0.00 3.21
5245 5961 6.751157 TGAAAAATGAAATCTGCTCACATGT 58.249 32.000 0.00 0.00 0.00 3.21
5246 5962 7.884257 TGAAAAATGAAATCTGCTCACATGTA 58.116 30.769 0.00 0.00 0.00 2.29
5247 5963 8.525316 TGAAAAATGAAATCTGCTCACATGTAT 58.475 29.630 0.00 0.00 0.00 2.29
5248 5964 8.922058 AAAAATGAAATCTGCTCACATGTATC 57.078 30.769 0.00 0.00 0.00 2.24
5249 5965 7.876936 AAATGAAATCTGCTCACATGTATCT 57.123 32.000 0.00 0.00 0.00 1.98
5250 5966 8.969260 AAATGAAATCTGCTCACATGTATCTA 57.031 30.769 0.00 0.00 0.00 1.98
5251 5967 9.570468 AAATGAAATCTGCTCACATGTATCTAT 57.430 29.630 0.00 0.00 0.00 1.98
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.662596 CAGGAGCAGCCGGTGTTA 59.337 61.111 1.90 0.00 43.43 2.41
87 88 0.249955 TGATCTGATGAACGGCTGCA 59.750 50.000 0.50 0.00 0.00 4.41
345 348 5.918608 ACGGAGTATAAACAGAGCATCAAT 58.081 37.500 0.00 0.00 41.94 2.57
366 369 2.160219 AGCACACATCATAAGCACAACG 59.840 45.455 0.00 0.00 0.00 4.10
402 405 4.288626 TCTTTGGCTAGTTGGTGAGGTTAT 59.711 41.667 0.00 0.00 0.00 1.89
431 434 0.038599 ATGCAAGGCCTGATGTGTGA 59.961 50.000 5.69 0.00 0.00 3.58
486 489 2.884012 CTGGTGTTTGGTTGTCTGCATA 59.116 45.455 0.00 0.00 0.00 3.14
493 496 0.324275 ACTGCCTGGTGTTTGGTTGT 60.324 50.000 0.00 0.00 0.00 3.32
660 666 2.753452 TCCACCACGTCTTCATCTCTAC 59.247 50.000 0.00 0.00 0.00 2.59
661 667 3.081710 TCCACCACGTCTTCATCTCTA 57.918 47.619 0.00 0.00 0.00 2.43
662 668 1.924731 TCCACCACGTCTTCATCTCT 58.075 50.000 0.00 0.00 0.00 3.10
663 669 2.482142 GGATCCACCACGTCTTCATCTC 60.482 54.545 6.95 0.00 38.79 2.75
664 670 1.482593 GGATCCACCACGTCTTCATCT 59.517 52.381 6.95 0.00 38.79 2.90
665 671 1.473434 GGGATCCACCACGTCTTCATC 60.473 57.143 15.23 0.00 41.20 2.92
666 672 0.541863 GGGATCCACCACGTCTTCAT 59.458 55.000 15.23 0.00 41.20 2.57
667 673 1.884075 CGGGATCCACCACGTCTTCA 61.884 60.000 15.23 0.00 41.20 3.02
668 674 1.153628 CGGGATCCACCACGTCTTC 60.154 63.158 15.23 0.00 41.20 2.87
669 675 1.608336 TCGGGATCCACCACGTCTT 60.608 57.895 15.23 0.00 41.20 3.01
670 676 2.036731 TCGGGATCCACCACGTCT 59.963 61.111 15.23 0.00 41.20 4.18
671 677 2.183555 GTCGGGATCCACCACGTC 59.816 66.667 15.23 1.80 41.20 4.34
672 678 3.387947 GGTCGGGATCCACCACGT 61.388 66.667 15.23 0.00 41.20 4.49
673 679 4.157120 GGGTCGGGATCCACCACG 62.157 72.222 20.06 11.86 41.20 4.94
674 680 3.006728 TGGGTCGGGATCCACCAC 61.007 66.667 20.06 10.27 36.49 4.16
675 681 2.687200 CTGGGTCGGGATCCACCA 60.687 66.667 20.06 16.81 36.49 4.17
676 682 3.480133 CCTGGGTCGGGATCCACC 61.480 72.222 15.23 13.43 36.49 4.61
680 686 3.090532 AAGCCCTGGGTCGGGATC 61.091 66.667 15.56 0.00 43.42 3.36
684 690 0.834612 TATTACAAGCCCTGGGTCGG 59.165 55.000 15.56 6.36 0.00 4.79
685 691 2.702592 TTATTACAAGCCCTGGGTCG 57.297 50.000 15.56 5.62 0.00 4.79
686 692 4.159693 CCTTTTTATTACAAGCCCTGGGTC 59.840 45.833 15.56 6.83 0.00 4.46
687 693 4.093743 CCTTTTTATTACAAGCCCTGGGT 58.906 43.478 15.56 0.00 0.00 4.51
688 694 3.450817 CCCTTTTTATTACAAGCCCTGGG 59.549 47.826 8.86 8.86 0.00 4.45
689 695 3.118775 GCCCTTTTTATTACAAGCCCTGG 60.119 47.826 0.00 0.00 0.00 4.45
690 696 3.513515 TGCCCTTTTTATTACAAGCCCTG 59.486 43.478 0.00 0.00 0.00 4.45
691 697 3.785364 TGCCCTTTTTATTACAAGCCCT 58.215 40.909 0.00 0.00 0.00 5.19
692 698 4.020573 AGTTGCCCTTTTTATTACAAGCCC 60.021 41.667 0.00 0.00 0.00 5.19
693 699 5.147330 AGTTGCCCTTTTTATTACAAGCC 57.853 39.130 0.00 0.00 0.00 4.35
694 700 6.071560 AGGTAGTTGCCCTTTTTATTACAAGC 60.072 38.462 0.00 0.00 0.00 4.01
695 701 7.462571 AGGTAGTTGCCCTTTTTATTACAAG 57.537 36.000 0.00 0.00 0.00 3.16
696 702 7.726738 AGAAGGTAGTTGCCCTTTTTATTACAA 59.273 33.333 0.00 0.00 42.37 2.41
697 703 7.235804 AGAAGGTAGTTGCCCTTTTTATTACA 58.764 34.615 0.00 0.00 42.37 2.41
707 713 4.825634 GTGTTTTTAGAAGGTAGTTGCCCT 59.174 41.667 0.00 0.00 0.00 5.19
823 831 2.034221 GTCGCTTGAAGGGGGCTT 59.966 61.111 9.46 0.00 0.00 4.35
853 861 2.603776 GAGTGGGGACTGGTCGGT 60.604 66.667 0.00 0.00 0.00 4.69
855 863 2.214216 TTGGAGTGGGGACTGGTCG 61.214 63.158 0.00 0.00 0.00 4.79
924 934 1.118356 TTGGCGCCAATTCCAAACCT 61.118 50.000 37.30 0.00 39.22 3.50
967 979 0.392595 GAGGCGGAAACCCTAGGTTG 60.393 60.000 8.29 0.00 46.20 3.77
969 981 0.976590 GAGAGGCGGAAACCCTAGGT 60.977 60.000 8.29 0.00 37.65 3.08
1242 1258 5.029807 TCACTGTAAGATGTCACCAAACA 57.970 39.130 0.00 0.00 37.43 2.83
1292 1308 2.226149 AAACCCACCAACCCGTCCAA 62.226 55.000 0.00 0.00 0.00 3.53
1326 1343 2.503765 ACCGAATCCACACACCATATCA 59.496 45.455 0.00 0.00 0.00 2.15
1395 1412 0.321653 GCCCCAGCTATATGGAACCG 60.322 60.000 0.00 0.00 43.57 4.44
1477 1527 9.638239 CAGGTAACATTAAACATGTAAATTGCT 57.362 29.630 0.00 0.00 41.41 3.91
1511 1561 3.122948 CACACGGAAACTAATTCTCACCG 59.877 47.826 0.00 0.00 43.61 4.94
1692 1757 4.946784 AAGAGACATGCGGAAATTACAC 57.053 40.909 0.00 0.00 0.00 2.90
1788 1855 0.389948 GGTGGACCGTAGAGCAACAG 60.390 60.000 0.00 0.00 0.00 3.16
2037 2108 2.124507 AATGGACACCACTCACCCCG 62.125 60.000 0.00 0.00 35.80 5.73
2099 2171 9.987272 CAGTCCACATTAGAACAATGATAGATA 57.013 33.333 4.10 0.00 0.00 1.98
2140 2227 3.562557 ACACACGACCTCATGTTAAAACC 59.437 43.478 0.00 0.00 0.00 3.27
2258 2467 0.322187 AACCATACGAGCAACCCCAC 60.322 55.000 0.00 0.00 0.00 4.61
2317 2539 6.006449 AGCCTTGTGAAGAAGTGAACAATAT 58.994 36.000 0.00 0.00 32.47 1.28
2492 2716 6.355397 CTGCAAGTAGGATCAGTGTTAATG 57.645 41.667 0.00 0.00 0.00 1.90
2767 2994 3.389925 TTGTAAGTCCCAACACGGTAG 57.610 47.619 0.00 0.00 0.00 3.18
2950 3189 7.487484 TCAGCTCATGAAAACAAAACAATGTA 58.513 30.769 0.00 0.00 34.02 2.29
2991 3267 4.789012 AAAAGGCAATGTATGTCAGTGG 57.211 40.909 0.00 0.00 41.66 4.00
3057 3333 1.298859 CCGTGCAAAGGTAGACAGCC 61.299 60.000 0.00 0.00 0.00 4.85
3185 3461 6.371271 GCATTAGGCACACAATTAAACCATTT 59.629 34.615 0.00 0.00 43.97 2.32
3186 3462 5.874261 GCATTAGGCACACAATTAAACCATT 59.126 36.000 0.00 0.00 43.97 3.16
3310 3589 2.322339 AGAAGGTACGAAAGGGAGGT 57.678 50.000 0.00 0.00 0.00 3.85
3347 3921 4.462508 AAAGGAGGGCTTAGTACGTTAC 57.537 45.455 0.00 0.00 0.00 2.50
3350 3924 5.688814 AATTAAAGGAGGGCTTAGTACGT 57.311 39.130 0.00 0.00 0.00 3.57
3352 3926 9.623000 TGAATTAATTAAAGGAGGGCTTAGTAC 57.377 33.333 1.21 0.00 0.00 2.73
3374 3948 8.776470 CACAAACCTGCAAGAAATTAATTGAAT 58.224 29.630 0.39 0.00 34.07 2.57
3535 4109 5.468072 AGTTAGATGTCAAGTTGAGCACAAG 59.532 40.000 5.62 0.00 36.64 3.16
3538 4112 4.752101 ACAGTTAGATGTCAAGTTGAGCAC 59.248 41.667 5.62 0.62 0.00 4.40
3546 4120 9.973450 ATGCTACTATTACAGTTAGATGTCAAG 57.027 33.333 0.00 0.00 38.80 3.02
3572 4150 6.939622 TGATTTCTGAGAAGAGAGCATACAA 58.060 36.000 0.00 0.00 0.00 2.41
3607 4185 9.719355 AATGAGTACTGTGACATAATACACAAA 57.281 29.630 0.00 0.00 44.50 2.83
3665 4270 2.158900 AGCCTCGGATCCATTACAGTTG 60.159 50.000 13.41 0.00 0.00 3.16
3701 4306 2.665165 CCAAACAAGCCTGGCCATATA 58.335 47.619 16.57 0.00 0.00 0.86
3715 4320 0.319083 ACGACCATACTCGCCAAACA 59.681 50.000 0.00 0.00 37.15 2.83
3717 4322 1.673626 GGAACGACCATACTCGCCAAA 60.674 52.381 0.00 0.00 37.15 3.28
3733 4338 7.611079 TCCTAGTTGACTAAAGTCTAGAGGAAC 59.389 40.741 16.24 9.93 44.99 3.62
3757 4372 6.922957 TGATTTGTGTGACTAATTGCTTTTCC 59.077 34.615 0.00 0.00 0.00 3.13
3805 4420 9.683069 AAGTAGATCAACAAAAACTATGCTTTG 57.317 29.630 0.00 0.00 38.29 2.77
3806 4421 9.899226 GAAGTAGATCAACAAAAACTATGCTTT 57.101 29.630 0.00 0.00 0.00 3.51
3807 4422 8.515414 GGAAGTAGATCAACAAAAACTATGCTT 58.485 33.333 0.00 0.00 0.00 3.91
3809 4424 7.094377 TGGGAAGTAGATCAACAAAAACTATGC 60.094 37.037 0.00 0.00 0.00 3.14
3810 4425 8.335532 TGGGAAGTAGATCAACAAAAACTATG 57.664 34.615 0.00 0.00 0.00 2.23
3811 4426 8.960591 CATGGGAAGTAGATCAACAAAAACTAT 58.039 33.333 0.00 0.00 0.00 2.12
3812 4427 7.942341 ACATGGGAAGTAGATCAACAAAAACTA 59.058 33.333 0.00 0.00 0.00 2.24
3814 4429 6.863126 CACATGGGAAGTAGATCAACAAAAAC 59.137 38.462 0.00 0.00 0.00 2.43
3819 4437 5.497464 TTCACATGGGAAGTAGATCAACA 57.503 39.130 6.21 0.00 0.00 3.33
3820 4438 6.825721 AGAATTCACATGGGAAGTAGATCAAC 59.174 38.462 16.88 0.00 0.00 3.18
3824 4442 6.821616 AGAGAATTCACATGGGAAGTAGAT 57.178 37.500 16.88 3.17 0.00 1.98
3827 4445 6.867519 TGTAGAGAATTCACATGGGAAGTA 57.132 37.500 16.88 0.00 0.00 2.24
3868 4488 6.632834 CGAAACTACCATGTTTTCACTTTCTG 59.367 38.462 0.00 0.00 39.86 3.02
3869 4489 6.540914 TCGAAACTACCATGTTTTCACTTTCT 59.459 34.615 0.00 0.00 39.86 2.52
3870 4490 6.721321 TCGAAACTACCATGTTTTCACTTTC 58.279 36.000 0.00 0.00 39.86 2.62
3872 4492 6.485313 TCATCGAAACTACCATGTTTTCACTT 59.515 34.615 0.00 0.00 39.86 3.16
3874 4494 6.236017 TCATCGAAACTACCATGTTTTCAC 57.764 37.500 0.00 0.00 39.86 3.18
3875 4495 6.485313 ACTTCATCGAAACTACCATGTTTTCA 59.515 34.615 0.00 0.00 39.86 2.69
3881 4504 9.314321 AGTAATTACTTCATCGAAACTACCATG 57.686 33.333 12.50 0.00 31.13 3.66
3882 4505 9.886132 AAGTAATTACTTCATCGAAACTACCAT 57.114 29.630 22.49 0.00 42.52 3.55
3914 4537 6.765915 AAATTTCCAGATAGGCAGAGTTTC 57.234 37.500 0.00 0.00 37.29 2.78
3917 4540 6.830838 CCTAAAAATTTCCAGATAGGCAGAGT 59.169 38.462 0.00 0.00 37.29 3.24
3924 4548 8.674607 GTGTACCACCTAAAAATTTCCAGATAG 58.325 37.037 0.00 0.00 0.00 2.08
3988 4633 1.696336 TCCCAGCAGAATCATAGCTCC 59.304 52.381 0.00 0.00 36.26 4.70
3992 4637 8.316946 TCATTATACTTCCCAGCAGAATCATAG 58.683 37.037 0.00 0.00 0.00 2.23
4014 4660 7.111247 TCAAGAAGTCAACAAAATGGTCATT 57.889 32.000 0.00 0.00 0.00 2.57
4041 4695 6.126739 GGTCCCAGTTCTTCAGGAATATAACT 60.127 42.308 0.00 0.00 36.24 2.24
4052 4706 3.662759 ACTTTTGGTCCCAGTTCTTCA 57.337 42.857 0.00 0.00 0.00 3.02
4057 4711 1.203013 GCCCTACTTTTGGTCCCAGTT 60.203 52.381 0.00 0.00 0.00 3.16
4076 4731 3.873952 AGAGAAACTGCCGATAGAATTGC 59.126 43.478 0.00 0.00 39.76 3.56
4086 4741 4.272504 TGACTGTTTTAAGAGAAACTGCCG 59.727 41.667 7.12 0.00 40.18 5.69
4093 4748 4.873827 ACGTTGCTGACTGTTTTAAGAGAA 59.126 37.500 0.00 0.00 0.00 2.87
4094 4749 4.439057 ACGTTGCTGACTGTTTTAAGAGA 58.561 39.130 0.00 0.00 0.00 3.10
4100 4755 5.163703 TGTCAATAACGTTGCTGACTGTTTT 60.164 36.000 29.29 0.54 39.15 2.43
4127 4782 9.760660 CTGCACAGAAAACAAAAGAGTATATAC 57.239 33.333 4.60 4.60 0.00 1.47
4128 4783 8.946085 CCTGCACAGAAAACAAAAGAGTATATA 58.054 33.333 0.00 0.00 0.00 0.86
4138 4793 3.252215 CCGATACCTGCACAGAAAACAAA 59.748 43.478 0.00 0.00 0.00 2.83
4139 4794 2.811431 CCGATACCTGCACAGAAAACAA 59.189 45.455 0.00 0.00 0.00 2.83
4226 4881 0.461870 CAGCAGCAACCATAGCCGTA 60.462 55.000 0.00 0.00 0.00 4.02
4345 5000 7.149569 TCTAACATGGAAATTTTCTGCTCAG 57.850 36.000 8.93 0.00 0.00 3.35
4360 5015 4.341806 AGCAGAGAGACAGATCTAACATGG 59.658 45.833 0.00 0.00 34.34 3.66
4377 5032 1.585002 GCTAGCACGTCGAGCAGAG 60.585 63.158 16.93 13.44 42.16 3.35
4465 5121 5.827267 TGTATTGTAGCATGCACCATATGTT 59.173 36.000 21.98 0.00 0.00 2.71
4468 5124 7.449395 AGAAATGTATTGTAGCATGCACCATAT 59.551 33.333 21.98 12.98 0.00 1.78
4524 5233 4.342772 GACAATACTGCGCAACCTAATTG 58.657 43.478 13.05 17.56 41.69 2.32
4566 5279 7.650903 CCTAATAGCTGATCAAAAAGAATTGCC 59.349 37.037 0.00 0.00 0.00 4.52
4629 5342 5.801947 GTGGACAATGTATCATGTTCAAAGC 59.198 40.000 0.00 0.00 36.83 3.51
4743 5459 0.036388 GGTTCCTTCAGCATCACGGA 60.036 55.000 0.00 0.00 0.00 4.69
4949 5665 6.220201 GTCTAATGGACTCTCAAGCTTATCC 58.780 44.000 0.00 2.37 41.46 2.59
4989 5705 4.219033 GACATCCAAACAAAGCGTAAGTG 58.781 43.478 0.00 0.00 41.68 3.16
4990 5706 3.252458 GGACATCCAAACAAAGCGTAAGT 59.748 43.478 0.00 0.00 36.13 2.24
4991 5707 3.666902 CGGACATCCAAACAAAGCGTAAG 60.667 47.826 0.00 0.00 35.14 2.34
4992 5708 2.224549 CGGACATCCAAACAAAGCGTAA 59.775 45.455 0.00 0.00 35.14 3.18
4994 5710 0.591170 CGGACATCCAAACAAAGCGT 59.409 50.000 0.00 0.00 35.14 5.07
4995 5711 0.591170 ACGGACATCCAAACAAAGCG 59.409 50.000 0.00 0.00 35.14 4.68
4996 5712 4.165779 CAATACGGACATCCAAACAAAGC 58.834 43.478 0.00 0.00 35.14 3.51
4997 5713 4.457603 TCCAATACGGACATCCAAACAAAG 59.542 41.667 0.00 0.00 39.64 2.77
4998 5714 4.399219 TCCAATACGGACATCCAAACAAA 58.601 39.130 0.00 0.00 39.64 2.83
4999 5715 4.006989 CTCCAATACGGACATCCAAACAA 58.993 43.478 0.00 0.00 39.64 2.83
5000 5716 3.605634 CTCCAATACGGACATCCAAACA 58.394 45.455 0.00 0.00 39.64 2.83
5001 5717 2.354821 GCTCCAATACGGACATCCAAAC 59.645 50.000 0.00 0.00 39.64 2.93
5002 5718 2.026729 TGCTCCAATACGGACATCCAAA 60.027 45.455 0.00 0.00 39.64 3.28
5003 5719 1.557371 TGCTCCAATACGGACATCCAA 59.443 47.619 0.00 0.00 39.64 3.53
5004 5720 1.134521 GTGCTCCAATACGGACATCCA 60.135 52.381 0.00 0.00 39.64 3.41
5005 5721 1.139058 AGTGCTCCAATACGGACATCC 59.861 52.381 0.00 0.00 39.64 3.51
5006 5722 2.474816 GAGTGCTCCAATACGGACATC 58.525 52.381 0.00 0.00 39.64 3.06
5007 5723 2.604046 GAGTGCTCCAATACGGACAT 57.396 50.000 0.00 0.00 39.64 3.06
5019 5735 4.156455 TCCAATTCAATAGGGAGTGCTC 57.844 45.455 0.00 0.00 0.00 4.26
5020 5736 4.591321 TTCCAATTCAATAGGGAGTGCT 57.409 40.909 0.00 0.00 0.00 4.40
5021 5737 6.299141 TCTATTCCAATTCAATAGGGAGTGC 58.701 40.000 11.39 0.00 35.38 4.40
5022 5738 8.930846 ATTCTATTCCAATTCAATAGGGAGTG 57.069 34.615 11.39 0.00 35.38 3.51
5023 5739 9.579932 GAATTCTATTCCAATTCAATAGGGAGT 57.420 33.333 11.39 0.00 39.24 3.85
5024 5740 9.804977 AGAATTCTATTCCAATTCAATAGGGAG 57.195 33.333 6.06 0.00 41.08 4.30
5036 5752 9.618890 CCTCACTGAATTAGAATTCTATTCCAA 57.381 33.333 15.82 3.10 43.97 3.53
5037 5753 8.992349 TCCTCACTGAATTAGAATTCTATTCCA 58.008 33.333 15.82 11.94 43.97 3.53
5038 5754 9.838339 TTCCTCACTGAATTAGAATTCTATTCC 57.162 33.333 15.82 8.38 43.97 3.01
5042 5758 9.658799 CAGTTTCCTCACTGAATTAGAATTCTA 57.341 33.333 11.24 11.24 46.29 2.10
5043 5759 8.558973 CAGTTTCCTCACTGAATTAGAATTCT 57.441 34.615 13.56 13.56 46.29 2.40
5055 5771 4.319046 CGTGTCATTTCAGTTTCCTCACTG 60.319 45.833 0.00 0.00 44.96 3.66
5056 5772 3.809832 CGTGTCATTTCAGTTTCCTCACT 59.190 43.478 0.00 0.00 0.00 3.41
5057 5773 3.807622 TCGTGTCATTTCAGTTTCCTCAC 59.192 43.478 0.00 0.00 0.00 3.51
5058 5774 4.066646 TCGTGTCATTTCAGTTTCCTCA 57.933 40.909 0.00 0.00 0.00 3.86
5059 5775 5.613358 ATTCGTGTCATTTCAGTTTCCTC 57.387 39.130 0.00 0.00 0.00 3.71
5060 5776 5.120208 CGTATTCGTGTCATTTCAGTTTCCT 59.880 40.000 0.00 0.00 0.00 3.36
5061 5777 5.119588 TCGTATTCGTGTCATTTCAGTTTCC 59.880 40.000 0.00 0.00 38.33 3.13
5062 5778 6.148270 TCGTATTCGTGTCATTTCAGTTTC 57.852 37.500 0.00 0.00 38.33 2.78
5063 5779 6.533819 TTCGTATTCGTGTCATTTCAGTTT 57.466 33.333 0.00 0.00 38.33 2.66
5064 5780 6.721571 ATTCGTATTCGTGTCATTTCAGTT 57.278 33.333 0.00 0.00 38.33 3.16
5065 5781 6.721571 AATTCGTATTCGTGTCATTTCAGT 57.278 33.333 0.00 0.00 38.33 3.41
5078 5794 5.526010 ACCAAACAGTCGAATTCGTATTC 57.474 39.130 25.93 14.99 40.80 1.75
5079 5795 5.237779 ACAACCAAACAGTCGAATTCGTATT 59.762 36.000 25.93 13.62 40.80 1.89
5080 5796 4.753107 ACAACCAAACAGTCGAATTCGTAT 59.247 37.500 25.93 13.81 40.80 3.06
5081 5797 4.121317 ACAACCAAACAGTCGAATTCGTA 58.879 39.130 25.93 11.29 40.80 3.43
5082 5798 2.940410 ACAACCAAACAGTCGAATTCGT 59.060 40.909 25.93 6.44 40.80 3.85
5083 5799 3.602390 ACAACCAAACAGTCGAATTCG 57.398 42.857 21.78 21.78 41.45 3.34
5084 5800 4.733405 GTGAACAACCAAACAGTCGAATTC 59.267 41.667 0.00 0.00 0.00 2.17
5085 5801 4.398044 AGTGAACAACCAAACAGTCGAATT 59.602 37.500 0.00 0.00 0.00 2.17
5086 5802 3.945285 AGTGAACAACCAAACAGTCGAAT 59.055 39.130 0.00 0.00 0.00 3.34
5087 5803 3.126171 CAGTGAACAACCAAACAGTCGAA 59.874 43.478 0.00 0.00 0.00 3.71
5088 5804 2.675844 CAGTGAACAACCAAACAGTCGA 59.324 45.455 0.00 0.00 0.00 4.20
5089 5805 2.675844 TCAGTGAACAACCAAACAGTCG 59.324 45.455 0.00 0.00 0.00 4.18
5090 5806 4.695217 TTCAGTGAACAACCAAACAGTC 57.305 40.909 0.08 0.00 0.00 3.51
5091 5807 5.184864 TCAATTCAGTGAACAACCAAACAGT 59.815 36.000 7.96 0.00 0.00 3.55
5092 5808 5.516339 GTCAATTCAGTGAACAACCAAACAG 59.484 40.000 7.96 0.00 0.00 3.16
5093 5809 5.406649 GTCAATTCAGTGAACAACCAAACA 58.593 37.500 7.96 0.00 0.00 2.83
5094 5810 4.803613 GGTCAATTCAGTGAACAACCAAAC 59.196 41.667 20.40 8.92 35.17 2.93
5095 5811 4.142049 GGGTCAATTCAGTGAACAACCAAA 60.142 41.667 23.97 0.00 36.92 3.28
5096 5812 3.383185 GGGTCAATTCAGTGAACAACCAA 59.617 43.478 23.97 0.00 36.92 3.67
5097 5813 2.955660 GGGTCAATTCAGTGAACAACCA 59.044 45.455 23.97 0.00 36.92 3.67
5098 5814 3.222603 AGGGTCAATTCAGTGAACAACC 58.777 45.455 18.42 18.42 36.92 3.77
5099 5815 4.338118 TCAAGGGTCAATTCAGTGAACAAC 59.662 41.667 7.96 6.64 36.92 3.32
5100 5816 4.531854 TCAAGGGTCAATTCAGTGAACAA 58.468 39.130 7.96 0.00 36.92 2.83
5101 5817 4.163441 TCAAGGGTCAATTCAGTGAACA 57.837 40.909 7.96 0.00 36.92 3.18
5102 5818 5.514274 TTTCAAGGGTCAATTCAGTGAAC 57.486 39.130 7.96 0.00 34.24 3.18
5103 5819 5.509501 GCATTTCAAGGGTCAATTCAGTGAA 60.510 40.000 8.27 8.27 0.00 3.18
5104 5820 4.022068 GCATTTCAAGGGTCAATTCAGTGA 60.022 41.667 0.00 0.00 0.00 3.41
5105 5821 4.240096 GCATTTCAAGGGTCAATTCAGTG 58.760 43.478 0.00 0.00 0.00 3.66
5106 5822 3.259123 GGCATTTCAAGGGTCAATTCAGT 59.741 43.478 0.00 0.00 0.00 3.41
5107 5823 3.512724 AGGCATTTCAAGGGTCAATTCAG 59.487 43.478 0.00 0.00 0.00 3.02
5108 5824 3.509442 AGGCATTTCAAGGGTCAATTCA 58.491 40.909 0.00 0.00 0.00 2.57
5109 5825 4.541973 AAGGCATTTCAAGGGTCAATTC 57.458 40.909 0.00 0.00 0.00 2.17
5110 5826 4.347583 TCAAAGGCATTTCAAGGGTCAATT 59.652 37.500 0.00 0.00 0.00 2.32
5111 5827 3.903090 TCAAAGGCATTTCAAGGGTCAAT 59.097 39.130 0.00 0.00 0.00 2.57
5112 5828 3.303938 TCAAAGGCATTTCAAGGGTCAA 58.696 40.909 0.00 0.00 0.00 3.18
5113 5829 2.892852 CTCAAAGGCATTTCAAGGGTCA 59.107 45.455 0.00 0.00 0.00 4.02
5114 5830 2.232208 CCTCAAAGGCATTTCAAGGGTC 59.768 50.000 12.05 0.00 29.96 4.46
5115 5831 2.250924 CCTCAAAGGCATTTCAAGGGT 58.749 47.619 12.05 0.00 29.96 4.34
5116 5832 2.250924 ACCTCAAAGGCATTTCAAGGG 58.749 47.619 20.17 11.16 39.63 3.95
5117 5833 4.202243 TGAAACCTCAAAGGCATTTCAAGG 60.202 41.667 16.42 16.42 37.40 3.61
5118 5834 4.947645 TGAAACCTCAAAGGCATTTCAAG 58.052 39.130 8.52 0.00 37.40 3.02
5119 5835 5.350504 TTGAAACCTCAAAGGCATTTCAA 57.649 34.783 15.25 15.25 42.79 2.69
5120 5836 5.549742 ATTGAAACCTCAAAGGCATTTCA 57.450 34.783 0.00 7.37 44.64 2.69
5121 5837 5.869344 GGTATTGAAACCTCAAAGGCATTTC 59.131 40.000 0.00 0.00 44.64 2.17
5122 5838 5.306678 TGGTATTGAAACCTCAAAGGCATTT 59.693 36.000 0.00 0.00 44.64 2.32
5123 5839 4.837860 TGGTATTGAAACCTCAAAGGCATT 59.162 37.500 0.00 0.00 44.64 3.56
5124 5840 4.415596 TGGTATTGAAACCTCAAAGGCAT 58.584 39.130 0.00 0.00 44.64 4.40
5125 5841 3.838565 TGGTATTGAAACCTCAAAGGCA 58.161 40.909 0.00 0.00 44.64 4.75
5126 5842 4.864704 TTGGTATTGAAACCTCAAAGGC 57.135 40.909 0.00 0.00 44.64 4.35
5127 5843 7.232118 AGATTTGGTATTGAAACCTCAAAGG 57.768 36.000 0.00 0.00 44.64 3.11
5128 5844 8.143835 ACAAGATTTGGTATTGAAACCTCAAAG 58.856 33.333 0.00 0.00 38.90 2.77
5129 5845 8.017418 ACAAGATTTGGTATTGAAACCTCAAA 57.983 30.769 0.00 0.00 38.90 2.69
5130 5846 7.595819 ACAAGATTTGGTATTGAAACCTCAA 57.404 32.000 0.00 0.00 40.44 3.02
5131 5847 7.595819 AACAAGATTTGGTATTGAAACCTCA 57.404 32.000 0.00 0.00 40.44 3.86
5132 5848 7.384932 CCAAACAAGATTTGGTATTGAAACCTC 59.615 37.037 9.78 0.00 42.92 3.85
5133 5849 7.070571 TCCAAACAAGATTTGGTATTGAAACCT 59.929 33.333 16.03 0.00 46.75 3.50
5134 5850 7.213678 TCCAAACAAGATTTGGTATTGAAACC 58.786 34.615 16.03 0.00 46.75 3.27
5135 5851 8.711457 CATCCAAACAAGATTTGGTATTGAAAC 58.289 33.333 16.03 0.00 46.75 2.78
5136 5852 8.646004 TCATCCAAACAAGATTTGGTATTGAAA 58.354 29.630 16.03 0.00 46.75 2.69
5137 5853 8.087750 GTCATCCAAACAAGATTTGGTATTGAA 58.912 33.333 16.03 0.00 46.75 2.69
5138 5854 7.232330 TGTCATCCAAACAAGATTTGGTATTGA 59.768 33.333 16.03 14.17 46.75 2.57
5139 5855 7.377398 TGTCATCCAAACAAGATTTGGTATTG 58.623 34.615 16.03 12.60 46.75 1.90
5140 5856 7.537596 TGTCATCCAAACAAGATTTGGTATT 57.462 32.000 16.03 2.94 46.75 1.89
5141 5857 7.537596 TTGTCATCCAAACAAGATTTGGTAT 57.462 32.000 16.03 7.58 46.75 2.73
5142 5858 6.968263 TTGTCATCCAAACAAGATTTGGTA 57.032 33.333 16.03 5.88 46.75 3.25
5143 5859 5.867903 TTGTCATCCAAACAAGATTTGGT 57.132 34.783 16.03 3.75 46.75 3.67
5154 5870 5.659463 CAAGTCCAAAGTTTGTCATCCAAA 58.341 37.500 14.36 0.00 40.71 3.28
5155 5871 4.441356 GCAAGTCCAAAGTTTGTCATCCAA 60.441 41.667 14.36 0.00 0.00 3.53
5156 5872 3.068024 GCAAGTCCAAAGTTTGTCATCCA 59.932 43.478 14.36 0.00 0.00 3.41
5157 5873 3.068024 TGCAAGTCCAAAGTTTGTCATCC 59.932 43.478 14.36 0.00 0.00 3.51
5158 5874 4.305989 TGCAAGTCCAAAGTTTGTCATC 57.694 40.909 14.36 2.45 0.00 2.92
5159 5875 4.942761 ATGCAAGTCCAAAGTTTGTCAT 57.057 36.364 14.36 5.26 0.00 3.06
5160 5876 4.261572 GCTATGCAAGTCCAAAGTTTGTCA 60.262 41.667 14.36 0.00 0.00 3.58
5161 5877 4.022849 AGCTATGCAAGTCCAAAGTTTGTC 60.023 41.667 14.36 7.28 0.00 3.18
5162 5878 3.891366 AGCTATGCAAGTCCAAAGTTTGT 59.109 39.130 14.36 0.00 0.00 2.83
5163 5879 4.510038 AGCTATGCAAGTCCAAAGTTTG 57.490 40.909 8.73 8.73 0.00 2.93
5164 5880 5.070001 TGTAGCTATGCAAGTCCAAAGTTT 58.930 37.500 0.00 0.00 0.00 2.66
5165 5881 4.651778 TGTAGCTATGCAAGTCCAAAGTT 58.348 39.130 0.00 0.00 0.00 2.66
5166 5882 4.286297 TGTAGCTATGCAAGTCCAAAGT 57.714 40.909 0.00 0.00 0.00 2.66
5167 5883 5.824904 AATGTAGCTATGCAAGTCCAAAG 57.175 39.130 0.00 0.00 0.00 2.77
5168 5884 6.925610 CTAATGTAGCTATGCAAGTCCAAA 57.074 37.500 0.00 0.00 0.00 3.28
5190 5906 9.836864 TGTACAACAAGATATAATCTTCATGCT 57.163 29.630 0.00 0.00 46.17 3.79
5211 5927 9.142515 GCAGATTTCATTTTTCAATCATGTACA 57.857 29.630 0.00 0.00 30.51 2.90
5212 5928 9.362539 AGCAGATTTCATTTTTCAATCATGTAC 57.637 29.630 0.00 0.00 30.51 2.90
5213 5929 9.577110 GAGCAGATTTCATTTTTCAATCATGTA 57.423 29.630 0.00 0.00 30.51 2.29
5214 5930 8.092068 TGAGCAGATTTCATTTTTCAATCATGT 58.908 29.630 0.00 0.00 30.51 3.21
5215 5931 8.380644 GTGAGCAGATTTCATTTTTCAATCATG 58.619 33.333 0.00 0.00 30.51 3.07
5216 5932 8.092068 TGTGAGCAGATTTCATTTTTCAATCAT 58.908 29.630 0.00 0.00 30.51 2.45
5217 5933 7.435305 TGTGAGCAGATTTCATTTTTCAATCA 58.565 30.769 0.00 0.00 30.51 2.57
5218 5934 7.878477 TGTGAGCAGATTTCATTTTTCAATC 57.122 32.000 0.00 0.00 0.00 2.67
5219 5935 7.876068 ACATGTGAGCAGATTTCATTTTTCAAT 59.124 29.630 0.00 0.00 0.00 2.57
5220 5936 7.211573 ACATGTGAGCAGATTTCATTTTTCAA 58.788 30.769 0.00 0.00 0.00 2.69
5221 5937 6.751157 ACATGTGAGCAGATTTCATTTTTCA 58.249 32.000 0.00 0.00 0.00 2.69
5222 5938 8.922058 ATACATGTGAGCAGATTTCATTTTTC 57.078 30.769 9.11 0.00 0.00 2.29
5223 5939 8.746530 AGATACATGTGAGCAGATTTCATTTTT 58.253 29.630 9.11 0.00 0.00 1.94
5224 5940 8.289939 AGATACATGTGAGCAGATTTCATTTT 57.710 30.769 9.11 0.00 0.00 1.82
5225 5941 7.876936 AGATACATGTGAGCAGATTTCATTT 57.123 32.000 9.11 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.