Multiple sequence alignment - TraesCS6B01G352800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G352800 chr6B 100.000 2492 0 0 1 2492 618665741 618668232 0.000000e+00 4602.0
1 TraesCS6B01G352800 chr6B 95.890 73 3 0 2282 2354 618859079 618859151 4.350000e-23 119.0
2 TraesCS6B01G352800 chr6B 89.831 59 6 0 1 59 693935058 693935000 2.660000e-10 76.8
3 TraesCS6B01G352800 chr6A 89.854 1301 78 29 616 1874 556033893 556035181 0.000000e+00 1622.0
4 TraesCS6B01G352800 chr6A 89.683 504 38 7 1881 2381 556035306 556035798 4.520000e-177 630.0
5 TraesCS6B01G352800 chr6D 92.037 967 47 19 616 1574 411467025 411467969 0.000000e+00 1332.0
6 TraesCS6B01G352800 chr6D 86.424 523 32 15 1583 2069 411468006 411468525 1.010000e-148 536.0
7 TraesCS6B01G352800 chr6D 91.438 292 16 7 2206 2492 411468648 411468935 2.320000e-105 392.0
8 TraesCS6B01G352800 chr6D 79.327 208 29 10 1 198 472967171 472967374 1.550000e-27 134.0
9 TraesCS6B01G352800 chr6D 95.122 41 2 0 2029 2069 411487558 411487598 5.750000e-07 65.8
10 TraesCS6B01G352800 chr4B 92.835 321 18 1 257 572 323790100 323789780 6.280000e-126 460.0
11 TraesCS6B01G352800 chr1B 91.239 331 23 2 245 569 458050912 458051242 1.760000e-121 446.0
12 TraesCS6B01G352800 chr1B 91.456 316 22 1 257 567 15435262 15434947 1.770000e-116 429.0
13 TraesCS6B01G352800 chr2B 91.139 316 23 3 257 567 767908484 767908169 8.240000e-115 424.0
14 TraesCS6B01G352800 chr2B 90.566 318 23 2 257 569 245007374 245007689 4.960000e-112 414.0
15 TraesCS6B01G352800 chrUn 90.566 318 25 2 257 569 158063545 158063862 1.380000e-112 416.0
16 TraesCS6B01G352800 chr3B 90.252 318 26 2 257 569 825003962 825004279 6.410000e-111 411.0
17 TraesCS6B01G352800 chr1D 90.000 320 25 3 257 570 443782612 443782294 8.300000e-110 407.0
18 TraesCS6B01G352800 chr5B 89.688 320 27 2 257 570 384026479 384026798 1.070000e-108 403.0
19 TraesCS6B01G352800 chr5B 86.207 58 7 1 12 69 6417618 6417562 7.440000e-06 62.1
20 TraesCS6B01G352800 chr4A 93.750 48 1 2 1 46 596086988 596087035 1.240000e-08 71.3
21 TraesCS6B01G352800 chr4D 93.182 44 2 1 1 43 1651380 1651337 2.070000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G352800 chr6B 618665741 618668232 2491 False 4602.000000 4602 100.000000 1 2492 1 chr6B.!!$F1 2491
1 TraesCS6B01G352800 chr6A 556033893 556035798 1905 False 1126.000000 1622 89.768500 616 2381 2 chr6A.!!$F1 1765
2 TraesCS6B01G352800 chr6D 411467025 411468935 1910 False 753.333333 1332 89.966333 616 2492 3 chr6D.!!$F3 1876

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
254 255 0.033642 GTCTATGAAGGCGTAGGGGC 59.966 60.0 0.0 0.0 42.69 5.8 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2141 2411 0.039618 AATGCGATTCCCACCCTGTT 59.96 50.0 0.0 0.0 0.0 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 7.715657 ACATTAGATGTTCTTGCAAAGTTTCA 58.284 30.769 0.00 0.00 41.63 2.69
29 30 7.864379 ACATTAGATGTTCTTGCAAAGTTTCAG 59.136 33.333 0.00 0.00 41.63 3.02
30 31 4.614946 AGATGTTCTTGCAAAGTTTCAGC 58.385 39.130 0.00 0.00 46.34 4.26
31 32 3.163630 TGTTCTTGCAAAGTTTCAGCC 57.836 42.857 0.00 0.00 46.34 4.85
32 33 2.495270 TGTTCTTGCAAAGTTTCAGCCA 59.505 40.909 0.00 0.00 46.34 4.75
33 34 2.860136 GTTCTTGCAAAGTTTCAGCCAC 59.140 45.455 0.00 0.00 46.34 5.01
34 35 2.098614 TCTTGCAAAGTTTCAGCCACA 58.901 42.857 0.00 0.00 46.34 4.17
35 36 2.495270 TCTTGCAAAGTTTCAGCCACAA 59.505 40.909 0.00 0.00 46.34 3.33
36 37 3.056250 TCTTGCAAAGTTTCAGCCACAAA 60.056 39.130 0.00 0.00 46.34 2.83
37 38 3.540314 TGCAAAGTTTCAGCCACAAAT 57.460 38.095 0.00 0.00 0.00 2.32
38 39 4.662468 TGCAAAGTTTCAGCCACAAATA 57.338 36.364 0.00 0.00 0.00 1.40
39 40 5.016051 TGCAAAGTTTCAGCCACAAATAA 57.984 34.783 0.00 0.00 0.00 1.40
40 41 5.423015 TGCAAAGTTTCAGCCACAAATAAA 58.577 33.333 0.00 0.00 0.00 1.40
41 42 6.054295 TGCAAAGTTTCAGCCACAAATAAAT 58.946 32.000 0.00 0.00 0.00 1.40
42 43 6.541641 TGCAAAGTTTCAGCCACAAATAAATT 59.458 30.769 0.00 0.00 0.00 1.82
43 44 7.066766 TGCAAAGTTTCAGCCACAAATAAATTT 59.933 29.630 0.00 0.00 0.00 1.82
44 45 7.914871 GCAAAGTTTCAGCCACAAATAAATTTT 59.085 29.630 0.00 0.00 0.00 1.82
45 46 9.224058 CAAAGTTTCAGCCACAAATAAATTTTG 57.776 29.630 0.00 0.00 33.49 2.44
46 47 8.729805 AAGTTTCAGCCACAAATAAATTTTGA 57.270 26.923 0.00 0.00 33.83 2.69
47 48 8.369218 AGTTTCAGCCACAAATAAATTTTGAG 57.631 30.769 0.00 0.00 33.83 3.02
48 49 7.442062 AGTTTCAGCCACAAATAAATTTTGAGG 59.558 33.333 9.34 9.34 41.20 3.86
49 50 6.662865 TCAGCCACAAATAAATTTTGAGGA 57.337 33.333 15.66 0.00 40.90 3.71
50 51 6.690530 TCAGCCACAAATAAATTTTGAGGAG 58.309 36.000 15.66 8.88 40.90 3.69
51 52 5.349543 CAGCCACAAATAAATTTTGAGGAGC 59.650 40.000 15.66 7.91 40.90 4.70
52 53 4.327087 GCCACAAATAAATTTTGAGGAGCG 59.673 41.667 15.66 0.00 40.90 5.03
53 54 4.327087 CCACAAATAAATTTTGAGGAGCGC 59.673 41.667 0.00 0.00 40.90 5.92
54 55 4.922692 CACAAATAAATTTTGAGGAGCGCA 59.077 37.500 11.47 0.00 33.83 6.09
55 56 4.923281 ACAAATAAATTTTGAGGAGCGCAC 59.077 37.500 11.47 1.97 33.83 5.34
56 57 4.782019 AATAAATTTTGAGGAGCGCACA 57.218 36.364 11.47 0.76 0.00 4.57
57 58 2.422276 AAATTTTGAGGAGCGCACAC 57.578 45.000 11.47 0.71 0.00 3.82
58 59 0.598065 AATTTTGAGGAGCGCACACC 59.402 50.000 11.47 10.37 0.00 4.16
59 60 0.537143 ATTTTGAGGAGCGCACACCA 60.537 50.000 11.47 1.77 0.00 4.17
60 61 0.749818 TTTTGAGGAGCGCACACCAA 60.750 50.000 11.47 8.60 0.00 3.67
61 62 0.749818 TTTGAGGAGCGCACACCAAA 60.750 50.000 11.47 14.23 0.00 3.28
62 63 0.537143 TTGAGGAGCGCACACCAAAT 60.537 50.000 11.47 0.00 0.00 2.32
63 64 0.323302 TGAGGAGCGCACACCAAATA 59.677 50.000 11.47 0.00 0.00 1.40
64 65 1.271108 TGAGGAGCGCACACCAAATAA 60.271 47.619 11.47 0.00 0.00 1.40
65 66 1.810151 GAGGAGCGCACACCAAATAAA 59.190 47.619 11.47 0.00 0.00 1.40
66 67 2.423538 GAGGAGCGCACACCAAATAAAT 59.576 45.455 11.47 0.00 0.00 1.40
67 68 2.423538 AGGAGCGCACACCAAATAAATC 59.576 45.455 11.47 0.00 0.00 2.17
68 69 2.163412 GGAGCGCACACCAAATAAATCA 59.837 45.455 11.47 0.00 0.00 2.57
69 70 3.181487 GGAGCGCACACCAAATAAATCAT 60.181 43.478 11.47 0.00 0.00 2.45
70 71 4.423732 GAGCGCACACCAAATAAATCATT 58.576 39.130 11.47 0.00 0.00 2.57
71 72 4.175516 AGCGCACACCAAATAAATCATTG 58.824 39.130 11.47 0.00 0.00 2.82
72 73 3.242059 GCGCACACCAAATAAATCATTGC 60.242 43.478 0.30 0.00 0.00 3.56
73 74 4.175516 CGCACACCAAATAAATCATTGCT 58.824 39.130 0.00 0.00 0.00 3.91
74 75 5.339177 CGCACACCAAATAAATCATTGCTA 58.661 37.500 0.00 0.00 0.00 3.49
75 76 5.804473 CGCACACCAAATAAATCATTGCTAA 59.196 36.000 0.00 0.00 0.00 3.09
76 77 6.309980 CGCACACCAAATAAATCATTGCTAAA 59.690 34.615 0.00 0.00 0.00 1.85
77 78 7.148672 CGCACACCAAATAAATCATTGCTAAAA 60.149 33.333 0.00 0.00 0.00 1.52
78 79 8.170553 GCACACCAAATAAATCATTGCTAAAAG 58.829 33.333 0.00 0.00 0.00 2.27
79 80 9.206870 CACACCAAATAAATCATTGCTAAAAGT 57.793 29.630 0.00 0.00 0.00 2.66
80 81 9.206870 ACACCAAATAAATCATTGCTAAAAGTG 57.793 29.630 0.00 0.00 0.00 3.16
81 82 8.170553 CACCAAATAAATCATTGCTAAAAGTGC 58.829 33.333 0.00 0.00 0.00 4.40
82 83 7.877097 ACCAAATAAATCATTGCTAAAAGTGCA 59.123 29.630 0.00 0.00 38.80 4.57
83 84 8.170553 CCAAATAAATCATTGCTAAAAGTGCAC 58.829 33.333 9.40 9.40 40.40 4.57
84 85 8.710551 CAAATAAATCATTGCTAAAAGTGCACA 58.289 29.630 21.04 0.00 40.40 4.57
85 86 9.439500 AAATAAATCATTGCTAAAAGTGCACAT 57.561 25.926 21.04 3.48 40.40 3.21
88 89 8.830201 AAATCATTGCTAAAAGTGCACATAAA 57.170 26.923 21.04 3.73 40.40 1.40
89 90 7.816945 ATCATTGCTAAAAGTGCACATAAAC 57.183 32.000 21.04 4.22 40.40 2.01
90 91 6.980593 TCATTGCTAAAAGTGCACATAAACT 58.019 32.000 21.04 0.00 40.40 2.66
91 92 7.432869 TCATTGCTAAAAGTGCACATAAACTT 58.567 30.769 21.04 0.00 40.40 2.66
92 93 7.594758 TCATTGCTAAAAGTGCACATAAACTTC 59.405 33.333 21.04 1.51 40.40 3.01
93 94 5.448438 TGCTAAAAGTGCACATAAACTTCG 58.552 37.500 21.04 0.00 35.60 3.79
94 95 5.237561 TGCTAAAAGTGCACATAAACTTCGA 59.762 36.000 21.04 0.00 35.60 3.71
95 96 6.140110 GCTAAAAGTGCACATAAACTTCGAA 58.860 36.000 21.04 0.00 35.60 3.71
96 97 6.801862 GCTAAAAGTGCACATAAACTTCGAAT 59.198 34.615 21.04 0.00 35.60 3.34
97 98 7.960738 GCTAAAAGTGCACATAAACTTCGAATA 59.039 33.333 21.04 0.00 35.60 1.75
98 99 9.478019 CTAAAAGTGCACATAAACTTCGAATAG 57.522 33.333 21.04 0.00 35.60 1.73
99 100 7.435068 AAAGTGCACATAAACTTCGAATAGT 57.565 32.000 21.04 0.00 35.60 2.12
100 101 6.408858 AGTGCACATAAACTTCGAATAGTG 57.591 37.500 21.04 3.18 0.00 2.74
101 102 6.163476 AGTGCACATAAACTTCGAATAGTGA 58.837 36.000 21.04 0.00 0.00 3.41
102 103 6.818644 AGTGCACATAAACTTCGAATAGTGAT 59.181 34.615 21.04 0.00 0.00 3.06
103 104 7.010552 AGTGCACATAAACTTCGAATAGTGATC 59.989 37.037 21.04 0.00 0.00 2.92
104 105 7.010552 GTGCACATAAACTTCGAATAGTGATCT 59.989 37.037 13.17 0.00 0.00 2.75
105 106 7.549134 TGCACATAAACTTCGAATAGTGATCTT 59.451 33.333 0.00 0.00 0.00 2.40
106 107 8.391106 GCACATAAACTTCGAATAGTGATCTTT 58.609 33.333 0.00 0.00 0.00 2.52
131 132 9.883142 TTTTTGTTGACTCCTGAAATGTTATTT 57.117 25.926 0.00 0.00 0.00 1.40
132 133 8.870160 TTTGTTGACTCCTGAAATGTTATTTG 57.130 30.769 0.00 0.00 0.00 2.32
133 134 7.581213 TGTTGACTCCTGAAATGTTATTTGT 57.419 32.000 0.00 0.00 0.00 2.83
134 135 7.424803 TGTTGACTCCTGAAATGTTATTTGTG 58.575 34.615 0.00 0.00 0.00 3.33
135 136 6.573664 TGACTCCTGAAATGTTATTTGTGG 57.426 37.500 0.00 0.00 0.00 4.17
136 137 6.303054 TGACTCCTGAAATGTTATTTGTGGA 58.697 36.000 0.00 0.00 0.00 4.02
137 138 6.947733 TGACTCCTGAAATGTTATTTGTGGAT 59.052 34.615 0.00 0.00 0.00 3.41
138 139 7.094248 TGACTCCTGAAATGTTATTTGTGGATG 60.094 37.037 0.00 0.00 0.00 3.51
139 140 6.947733 ACTCCTGAAATGTTATTTGTGGATGA 59.052 34.615 0.00 0.00 0.00 2.92
140 141 7.451255 ACTCCTGAAATGTTATTTGTGGATGAA 59.549 33.333 0.00 0.00 0.00 2.57
141 142 8.187913 TCCTGAAATGTTATTTGTGGATGAAA 57.812 30.769 0.00 0.00 0.00 2.69
142 143 8.087750 TCCTGAAATGTTATTTGTGGATGAAAC 58.912 33.333 0.00 0.00 0.00 2.78
143 144 8.090214 CCTGAAATGTTATTTGTGGATGAAACT 58.910 33.333 0.00 0.00 0.00 2.66
144 145 9.480053 CTGAAATGTTATTTGTGGATGAAACTT 57.520 29.630 0.00 0.00 0.00 2.66
145 146 9.829507 TGAAATGTTATTTGTGGATGAAACTTT 57.170 25.926 0.00 0.00 0.00 2.66
147 148 7.656707 ATGTTATTTGTGGATGAAACTTTGC 57.343 32.000 0.00 0.00 0.00 3.68
148 149 6.577103 TGTTATTTGTGGATGAAACTTTGCA 58.423 32.000 0.00 0.00 0.00 4.08
149 150 7.044181 TGTTATTTGTGGATGAAACTTTGCAA 58.956 30.769 0.00 0.00 0.00 4.08
150 151 7.224362 TGTTATTTGTGGATGAAACTTTGCAAG 59.776 33.333 0.00 0.00 0.00 4.01
151 152 4.998671 TTGTGGATGAAACTTTGCAAGA 57.001 36.364 0.00 0.00 0.00 3.02
152 153 4.572985 TGTGGATGAAACTTTGCAAGAG 57.427 40.909 0.00 3.23 0.00 2.85
153 154 3.243501 TGTGGATGAAACTTTGCAAGAGC 60.244 43.478 0.00 0.00 42.57 4.09
169 170 5.888105 GCAAGAGCATCAGTTTTATCATGT 58.112 37.500 0.00 0.00 41.58 3.21
170 171 6.327934 GCAAGAGCATCAGTTTTATCATGTT 58.672 36.000 0.00 0.00 41.58 2.71
171 172 6.810182 GCAAGAGCATCAGTTTTATCATGTTT 59.190 34.615 0.00 0.00 41.58 2.83
172 173 7.201410 GCAAGAGCATCAGTTTTATCATGTTTG 60.201 37.037 0.00 0.00 41.58 2.93
173 174 7.692460 AGAGCATCAGTTTTATCATGTTTGA 57.308 32.000 0.00 0.00 37.82 2.69
174 175 8.289939 AGAGCATCAGTTTTATCATGTTTGAT 57.710 30.769 0.00 0.00 41.27 2.57
175 176 8.188799 AGAGCATCAGTTTTATCATGTTTGATG 58.811 33.333 9.55 9.55 39.53 3.07
176 177 7.833786 AGCATCAGTTTTATCATGTTTGATGT 58.166 30.769 13.22 3.11 42.60 3.06
177 178 7.972277 AGCATCAGTTTTATCATGTTTGATGTC 59.028 33.333 13.22 8.30 42.60 3.06
178 179 7.221452 GCATCAGTTTTATCATGTTTGATGTCC 59.779 37.037 13.22 0.52 42.60 4.02
179 180 8.464404 CATCAGTTTTATCATGTTTGATGTCCT 58.536 33.333 7.02 0.00 42.60 3.85
180 181 9.685276 ATCAGTTTTATCATGTTTGATGTCCTA 57.315 29.630 0.00 0.00 42.60 2.94
181 182 8.946085 TCAGTTTTATCATGTTTGATGTCCTAC 58.054 33.333 0.00 0.00 42.60 3.18
182 183 8.729756 CAGTTTTATCATGTTTGATGTCCTACA 58.270 33.333 0.00 0.00 42.60 2.74
183 184 8.950210 AGTTTTATCATGTTTGATGTCCTACAG 58.050 33.333 0.00 0.00 42.60 2.74
184 185 8.730680 GTTTTATCATGTTTGATGTCCTACAGT 58.269 33.333 0.00 0.00 42.60 3.55
185 186 8.862325 TTTATCATGTTTGATGTCCTACAGTT 57.138 30.769 0.00 0.00 42.60 3.16
186 187 8.862325 TTATCATGTTTGATGTCCTACAGTTT 57.138 30.769 0.00 0.00 42.60 2.66
187 188 6.801539 TCATGTTTGATGTCCTACAGTTTC 57.198 37.500 0.00 0.00 0.00 2.78
188 189 5.408299 TCATGTTTGATGTCCTACAGTTTCG 59.592 40.000 0.00 0.00 0.00 3.46
189 190 4.062293 TGTTTGATGTCCTACAGTTTCGG 58.938 43.478 0.00 0.00 0.00 4.30
190 191 4.202274 TGTTTGATGTCCTACAGTTTCGGA 60.202 41.667 0.00 0.00 0.00 4.55
191 192 3.868757 TGATGTCCTACAGTTTCGGAG 57.131 47.619 0.00 0.00 0.00 4.63
192 193 3.162666 TGATGTCCTACAGTTTCGGAGT 58.837 45.455 0.00 0.00 0.00 3.85
193 194 3.576982 TGATGTCCTACAGTTTCGGAGTT 59.423 43.478 0.00 0.00 0.00 3.01
194 195 4.039973 TGATGTCCTACAGTTTCGGAGTTT 59.960 41.667 0.00 0.00 0.00 2.66
195 196 4.411256 TGTCCTACAGTTTCGGAGTTTT 57.589 40.909 0.00 0.00 0.00 2.43
196 197 4.773013 TGTCCTACAGTTTCGGAGTTTTT 58.227 39.130 0.00 0.00 0.00 1.94
246 247 7.792374 TTATTCATTCACTGTCTATGAAGGC 57.208 36.000 15.23 0.00 40.45 4.35
247 248 3.785486 TCATTCACTGTCTATGAAGGCG 58.215 45.455 0.00 0.00 39.36 5.52
248 249 3.195610 TCATTCACTGTCTATGAAGGCGT 59.804 43.478 0.00 0.00 39.36 5.68
249 250 4.401202 TCATTCACTGTCTATGAAGGCGTA 59.599 41.667 0.00 0.00 39.36 4.42
250 251 4.371855 TTCACTGTCTATGAAGGCGTAG 57.628 45.455 0.00 0.00 35.38 3.51
251 252 2.688446 TCACTGTCTATGAAGGCGTAGG 59.312 50.000 0.00 0.00 34.91 3.18
252 253 2.032620 ACTGTCTATGAAGGCGTAGGG 58.967 52.381 0.00 0.00 34.91 3.53
253 254 1.341531 CTGTCTATGAAGGCGTAGGGG 59.658 57.143 0.00 0.00 34.91 4.79
254 255 0.033642 GTCTATGAAGGCGTAGGGGC 59.966 60.000 0.00 0.00 42.69 5.80
255 256 0.397957 TCTATGAAGGCGTAGGGGCA 60.398 55.000 0.00 0.00 45.36 5.36
256 257 0.034059 CTATGAAGGCGTAGGGGCAG 59.966 60.000 0.00 0.00 45.36 4.85
257 258 1.407656 TATGAAGGCGTAGGGGCAGG 61.408 60.000 0.00 0.00 45.36 4.85
258 259 3.081409 GAAGGCGTAGGGGCAGGA 61.081 66.667 0.00 0.00 45.36 3.86
259 260 2.609610 AAGGCGTAGGGGCAGGAA 60.610 61.111 0.00 0.00 45.36 3.36
260 261 2.595009 GAAGGCGTAGGGGCAGGAAG 62.595 65.000 0.00 0.00 45.36 3.46
261 262 3.400054 GGCGTAGGGGCAGGAAGT 61.400 66.667 0.00 0.00 41.77 3.01
262 263 2.125106 GCGTAGGGGCAGGAAGTG 60.125 66.667 0.00 0.00 0.00 3.16
263 264 2.584608 CGTAGGGGCAGGAAGTGG 59.415 66.667 0.00 0.00 0.00 4.00
264 265 1.987855 CGTAGGGGCAGGAAGTGGA 60.988 63.158 0.00 0.00 0.00 4.02
265 266 1.338136 CGTAGGGGCAGGAAGTGGAT 61.338 60.000 0.00 0.00 0.00 3.41
266 267 0.470341 GTAGGGGCAGGAAGTGGATC 59.530 60.000 0.00 0.00 0.00 3.36
267 268 0.694444 TAGGGGCAGGAAGTGGATCC 60.694 60.000 4.20 4.20 39.96 3.36
279 280 6.043854 GGAAGTGGATCCTATAACATCCTC 57.956 45.833 14.23 7.14 39.62 3.71
280 281 5.544176 GGAAGTGGATCCTATAACATCCTCA 59.456 44.000 14.23 0.00 39.62 3.86
281 282 6.043243 GGAAGTGGATCCTATAACATCCTCAA 59.957 42.308 14.23 0.00 39.62 3.02
282 283 6.678568 AGTGGATCCTATAACATCCTCAAG 57.321 41.667 14.23 0.00 39.62 3.02
283 284 5.545723 AGTGGATCCTATAACATCCTCAAGG 59.454 44.000 14.23 0.00 39.62 3.61
284 285 4.846367 TGGATCCTATAACATCCTCAAGGG 59.154 45.833 14.23 0.00 39.62 3.95
293 294 3.374318 TCCTCAAGGGATGTCACGA 57.626 52.632 0.00 0.00 39.58 4.35
294 295 1.639722 TCCTCAAGGGATGTCACGAA 58.360 50.000 0.00 0.00 39.58 3.85
295 296 1.550524 TCCTCAAGGGATGTCACGAAG 59.449 52.381 0.00 0.00 39.58 3.79
296 297 1.363744 CTCAAGGGATGTCACGAAGC 58.636 55.000 0.00 0.00 0.00 3.86
297 298 0.976641 TCAAGGGATGTCACGAAGCT 59.023 50.000 0.00 0.00 0.00 3.74
298 299 2.166459 CTCAAGGGATGTCACGAAGCTA 59.834 50.000 0.00 0.00 0.00 3.32
299 300 2.094182 TCAAGGGATGTCACGAAGCTAC 60.094 50.000 0.00 0.00 0.00 3.58
300 301 1.557099 AGGGATGTCACGAAGCTACA 58.443 50.000 0.00 0.00 0.00 2.74
301 302 1.478510 AGGGATGTCACGAAGCTACAG 59.521 52.381 0.00 0.00 0.00 2.74
302 303 1.204941 GGGATGTCACGAAGCTACAGT 59.795 52.381 0.00 0.00 0.00 3.55
303 304 2.426024 GGGATGTCACGAAGCTACAGTA 59.574 50.000 0.00 0.00 0.00 2.74
304 305 3.119245 GGGATGTCACGAAGCTACAGTAA 60.119 47.826 0.00 0.00 0.00 2.24
305 306 4.491676 GGATGTCACGAAGCTACAGTAAA 58.508 43.478 0.00 0.00 0.00 2.01
306 307 4.927425 GGATGTCACGAAGCTACAGTAAAA 59.073 41.667 0.00 0.00 0.00 1.52
307 308 5.581085 GGATGTCACGAAGCTACAGTAAAAT 59.419 40.000 0.00 0.00 0.00 1.82
308 309 5.839262 TGTCACGAAGCTACAGTAAAATG 57.161 39.130 0.00 0.00 0.00 2.32
309 310 4.151689 TGTCACGAAGCTACAGTAAAATGC 59.848 41.667 0.00 0.00 0.00 3.56
310 311 4.151689 GTCACGAAGCTACAGTAAAATGCA 59.848 41.667 0.00 0.00 0.00 3.96
311 312 4.935205 TCACGAAGCTACAGTAAAATGCAT 59.065 37.500 0.00 0.00 0.00 3.96
312 313 5.023920 CACGAAGCTACAGTAAAATGCATG 58.976 41.667 0.00 0.00 0.00 4.06
313 314 4.695455 ACGAAGCTACAGTAAAATGCATGT 59.305 37.500 0.00 0.00 0.00 3.21
314 315 5.872617 ACGAAGCTACAGTAAAATGCATGTA 59.127 36.000 0.00 0.00 0.00 2.29
315 316 6.538742 ACGAAGCTACAGTAAAATGCATGTAT 59.461 34.615 0.00 0.00 0.00 2.29
316 317 7.709182 ACGAAGCTACAGTAAAATGCATGTATA 59.291 33.333 0.00 0.00 0.00 1.47
317 318 8.547894 CGAAGCTACAGTAAAATGCATGTATAA 58.452 33.333 0.00 0.00 0.00 0.98
321 322 8.943925 GCTACAGTAAAATGCATGTATAAAACG 58.056 33.333 0.00 0.00 0.00 3.60
324 325 9.554724 ACAGTAAAATGCATGTATAAAACGAAG 57.445 29.630 0.00 0.00 0.00 3.79
325 326 9.767684 CAGTAAAATGCATGTATAAAACGAAGA 57.232 29.630 0.00 0.00 0.00 2.87
328 329 8.687824 AAAATGCATGTATAAAACGAAGAAGG 57.312 30.769 0.00 0.00 0.00 3.46
329 330 5.811399 TGCATGTATAAAACGAAGAAGGG 57.189 39.130 0.00 0.00 0.00 3.95
330 331 5.492895 TGCATGTATAAAACGAAGAAGGGA 58.507 37.500 0.00 0.00 0.00 4.20
331 332 6.119536 TGCATGTATAAAACGAAGAAGGGAT 58.880 36.000 0.00 0.00 0.00 3.85
332 333 6.038161 TGCATGTATAAAACGAAGAAGGGATG 59.962 38.462 0.00 0.00 0.00 3.51
333 334 6.038271 GCATGTATAAAACGAAGAAGGGATGT 59.962 38.462 0.00 0.00 0.00 3.06
334 335 7.630924 CATGTATAAAACGAAGAAGGGATGTC 58.369 38.462 0.00 0.00 0.00 3.06
335 336 6.703319 TGTATAAAACGAAGAAGGGATGTCA 58.297 36.000 0.00 0.00 0.00 3.58
336 337 6.816640 TGTATAAAACGAAGAAGGGATGTCAG 59.183 38.462 0.00 0.00 0.00 3.51
337 338 2.770164 AACGAAGAAGGGATGTCAGG 57.230 50.000 0.00 0.00 0.00 3.86
338 339 0.905357 ACGAAGAAGGGATGTCAGGG 59.095 55.000 0.00 0.00 0.00 4.45
339 340 0.905357 CGAAGAAGGGATGTCAGGGT 59.095 55.000 0.00 0.00 0.00 4.34
340 341 1.279271 CGAAGAAGGGATGTCAGGGTT 59.721 52.381 0.00 0.00 0.00 4.11
341 342 2.500098 CGAAGAAGGGATGTCAGGGTTA 59.500 50.000 0.00 0.00 0.00 2.85
342 343 3.134804 CGAAGAAGGGATGTCAGGGTTAT 59.865 47.826 0.00 0.00 0.00 1.89
343 344 4.384208 CGAAGAAGGGATGTCAGGGTTATT 60.384 45.833 0.00 0.00 0.00 1.40
344 345 5.163343 CGAAGAAGGGATGTCAGGGTTATTA 60.163 44.000 0.00 0.00 0.00 0.98
345 346 6.464465 CGAAGAAGGGATGTCAGGGTTATTAT 60.464 42.308 0.00 0.00 0.00 1.28
346 347 7.256190 CGAAGAAGGGATGTCAGGGTTATTATA 60.256 40.741 0.00 0.00 0.00 0.98
347 348 7.560796 AGAAGGGATGTCAGGGTTATTATAG 57.439 40.000 0.00 0.00 0.00 1.31
348 349 5.763876 AGGGATGTCAGGGTTATTATAGC 57.236 43.478 0.00 0.00 0.00 2.97
349 350 5.162637 AGGGATGTCAGGGTTATTATAGCA 58.837 41.667 0.00 0.00 0.00 3.49
350 351 5.610982 AGGGATGTCAGGGTTATTATAGCAA 59.389 40.000 0.00 0.00 0.00 3.91
351 352 5.705905 GGGATGTCAGGGTTATTATAGCAAC 59.294 44.000 0.00 0.00 0.00 4.17
352 353 5.705905 GGATGTCAGGGTTATTATAGCAACC 59.294 44.000 8.41 8.41 42.94 3.77
353 354 5.702065 TGTCAGGGTTATTATAGCAACCA 57.298 39.130 15.61 0.00 45.03 3.67
354 355 5.433526 TGTCAGGGTTATTATAGCAACCAC 58.566 41.667 15.61 8.65 45.03 4.16
355 356 5.190925 TGTCAGGGTTATTATAGCAACCACT 59.809 40.000 15.61 9.62 45.03 4.00
356 357 5.527582 GTCAGGGTTATTATAGCAACCACTG 59.472 44.000 15.61 17.07 45.03 3.66
357 358 5.190925 TCAGGGTTATTATAGCAACCACTGT 59.809 40.000 20.50 6.01 45.03 3.55
358 359 5.296780 CAGGGTTATTATAGCAACCACTGTG 59.703 44.000 15.61 0.00 45.03 3.66
359 360 4.036380 GGGTTATTATAGCAACCACTGTGC 59.964 45.833 15.61 0.00 45.03 4.57
360 361 4.260620 GGTTATTATAGCAACCACTGTGCG 60.261 45.833 1.29 0.00 43.13 5.34
361 362 1.732941 TTATAGCAACCACTGTGCGG 58.267 50.000 1.29 0.00 0.00 5.69
362 363 0.899019 TATAGCAACCACTGTGCGGA 59.101 50.000 1.29 0.00 0.00 5.54
363 364 0.253044 ATAGCAACCACTGTGCGGAT 59.747 50.000 1.29 0.00 0.00 4.18
364 365 0.036164 TAGCAACCACTGTGCGGATT 59.964 50.000 1.29 0.00 0.00 3.01
365 366 0.823356 AGCAACCACTGTGCGGATTT 60.823 50.000 1.29 0.00 0.00 2.17
366 367 0.878416 GCAACCACTGTGCGGATTTA 59.122 50.000 1.29 0.00 0.00 1.40
367 368 1.401018 GCAACCACTGTGCGGATTTAC 60.401 52.381 1.29 0.00 0.00 2.01
368 369 2.151202 CAACCACTGTGCGGATTTACT 58.849 47.619 1.29 0.00 0.00 2.24
369 370 1.808411 ACCACTGTGCGGATTTACTG 58.192 50.000 1.29 0.00 0.00 2.74
370 371 1.071699 ACCACTGTGCGGATTTACTGT 59.928 47.619 1.29 0.00 0.00 3.55
371 372 2.300723 ACCACTGTGCGGATTTACTGTA 59.699 45.455 1.29 0.00 0.00 2.74
372 373 3.055385 ACCACTGTGCGGATTTACTGTAT 60.055 43.478 1.29 0.00 0.00 2.29
373 374 4.160814 ACCACTGTGCGGATTTACTGTATA 59.839 41.667 1.29 0.00 0.00 1.47
374 375 4.506654 CCACTGTGCGGATTTACTGTATAC 59.493 45.833 1.29 0.00 0.00 1.47
375 376 5.106442 CACTGTGCGGATTTACTGTATACA 58.894 41.667 5.25 5.25 0.00 2.29
376 377 5.579119 CACTGTGCGGATTTACTGTATACAA 59.421 40.000 7.06 0.00 0.00 2.41
377 378 6.091577 CACTGTGCGGATTTACTGTATACAAA 59.908 38.462 7.06 0.00 0.00 2.83
378 379 6.651643 ACTGTGCGGATTTACTGTATACAAAA 59.348 34.615 7.06 6.13 0.00 2.44
379 380 7.173562 ACTGTGCGGATTTACTGTATACAAAAA 59.826 33.333 7.06 10.60 0.00 1.94
380 381 8.046294 TGTGCGGATTTACTGTATACAAAAAT 57.954 30.769 18.79 18.79 0.00 1.82
381 382 9.163899 TGTGCGGATTTACTGTATACAAAAATA 57.836 29.630 18.76 7.27 0.00 1.40
382 383 9.991388 GTGCGGATTTACTGTATACAAAAATAA 57.009 29.630 18.76 9.00 0.00 1.40
423 424 8.845413 ATTGCACCATAATTTTGTTTGTATGT 57.155 26.923 0.00 0.00 0.00 2.29
424 425 9.935241 ATTGCACCATAATTTTGTTTGTATGTA 57.065 25.926 0.00 0.00 0.00 2.29
425 426 9.764363 TTGCACCATAATTTTGTTTGTATGTAA 57.236 25.926 0.00 0.00 0.00 2.41
426 427 9.935241 TGCACCATAATTTTGTTTGTATGTAAT 57.065 25.926 0.00 0.00 0.00 1.89
518 519 7.307493 TGAATGTGAAGAAGAAATATCACGG 57.693 36.000 0.00 0.00 43.91 4.94
519 520 6.878923 TGAATGTGAAGAAGAAATATCACGGT 59.121 34.615 0.00 0.00 43.91 4.83
520 521 7.390440 TGAATGTGAAGAAGAAATATCACGGTT 59.610 33.333 0.00 0.00 43.91 4.44
521 522 8.786826 AATGTGAAGAAGAAATATCACGGTTA 57.213 30.769 0.00 0.00 43.91 2.85
522 523 7.591006 TGTGAAGAAGAAATATCACGGTTAC 57.409 36.000 0.00 0.00 43.91 2.50
523 524 7.383687 TGTGAAGAAGAAATATCACGGTTACT 58.616 34.615 0.00 0.00 43.91 2.24
524 525 8.525316 TGTGAAGAAGAAATATCACGGTTACTA 58.475 33.333 0.00 0.00 43.91 1.82
525 526 9.530633 GTGAAGAAGAAATATCACGGTTACTAT 57.469 33.333 0.00 0.00 33.62 2.12
528 529 9.694137 AAGAAGAAATATCACGGTTACTATAGC 57.306 33.333 0.00 0.00 0.00 2.97
529 530 9.080097 AGAAGAAATATCACGGTTACTATAGCT 57.920 33.333 0.00 0.00 0.00 3.32
530 531 9.694137 GAAGAAATATCACGGTTACTATAGCTT 57.306 33.333 0.00 0.00 0.00 3.74
533 534 8.961294 AAATATCACGGTTACTATAGCTTACG 57.039 34.615 0.00 2.97 0.00 3.18
534 535 7.678947 ATATCACGGTTACTATAGCTTACGT 57.321 36.000 0.00 3.61 0.00 3.57
537 538 5.162000 ACGGTTACTATAGCTTACGTGAC 57.838 43.478 0.00 0.00 31.60 3.67
538 539 4.635765 ACGGTTACTATAGCTTACGTGACA 59.364 41.667 0.00 0.00 31.60 3.58
539 540 5.297776 ACGGTTACTATAGCTTACGTGACAT 59.702 40.000 0.00 0.00 31.60 3.06
540 541 5.850128 CGGTTACTATAGCTTACGTGACATC 59.150 44.000 0.00 0.00 0.00 3.06
541 542 6.148264 GGTTACTATAGCTTACGTGACATCC 58.852 44.000 0.00 0.00 0.00 3.51
542 543 4.850347 ACTATAGCTTACGTGACATCCC 57.150 45.455 0.00 0.00 0.00 3.85
543 544 4.471548 ACTATAGCTTACGTGACATCCCT 58.528 43.478 0.00 0.00 0.00 4.20
544 545 4.894114 ACTATAGCTTACGTGACATCCCTT 59.106 41.667 0.00 0.00 0.00 3.95
545 546 2.386661 AGCTTACGTGACATCCCTTG 57.613 50.000 0.00 0.00 0.00 3.61
546 547 1.899814 AGCTTACGTGACATCCCTTGA 59.100 47.619 0.00 0.00 0.00 3.02
547 548 2.093973 AGCTTACGTGACATCCCTTGAG 60.094 50.000 0.00 0.00 0.00 3.02
548 549 2.094182 GCTTACGTGACATCCCTTGAGA 60.094 50.000 0.00 0.00 0.00 3.27
549 550 3.616560 GCTTACGTGACATCCCTTGAGAA 60.617 47.826 0.00 0.00 0.00 2.87
550 551 4.759782 CTTACGTGACATCCCTTGAGAAT 58.240 43.478 0.00 0.00 0.00 2.40
551 552 2.977914 ACGTGACATCCCTTGAGAATG 58.022 47.619 0.00 0.00 0.00 2.67
552 553 2.303022 ACGTGACATCCCTTGAGAATGT 59.697 45.455 0.00 0.00 0.00 2.71
553 554 3.244561 ACGTGACATCCCTTGAGAATGTT 60.245 43.478 0.00 0.00 0.00 2.71
554 555 4.020573 ACGTGACATCCCTTGAGAATGTTA 60.021 41.667 0.00 0.00 0.00 2.41
555 556 4.568359 CGTGACATCCCTTGAGAATGTTAG 59.432 45.833 0.00 0.00 0.00 2.34
556 557 5.624509 CGTGACATCCCTTGAGAATGTTAGA 60.625 44.000 0.00 0.00 0.00 2.10
557 558 5.814705 GTGACATCCCTTGAGAATGTTAGAG 59.185 44.000 0.00 0.00 0.00 2.43
558 559 5.104776 TGACATCCCTTGAGAATGTTAGAGG 60.105 44.000 0.00 0.00 0.00 3.69
559 560 5.032846 ACATCCCTTGAGAATGTTAGAGGA 58.967 41.667 0.00 0.00 0.00 3.71
560 561 5.669447 ACATCCCTTGAGAATGTTAGAGGAT 59.331 40.000 0.00 0.00 31.82 3.24
561 562 5.878406 TCCCTTGAGAATGTTAGAGGATC 57.122 43.478 0.00 0.00 0.00 3.36
562 563 4.656112 TCCCTTGAGAATGTTAGAGGATCC 59.344 45.833 2.48 2.48 33.66 3.36
563 564 4.502259 CCCTTGAGAATGTTAGAGGATCCG 60.502 50.000 5.98 0.00 33.66 4.18
564 565 4.502259 CCTTGAGAATGTTAGAGGATCCGG 60.502 50.000 5.98 0.00 33.66 5.14
565 566 3.643237 TGAGAATGTTAGAGGATCCGGT 58.357 45.455 5.98 0.00 33.66 5.28
566 567 4.030913 TGAGAATGTTAGAGGATCCGGTT 58.969 43.478 5.98 0.00 33.66 4.44
567 568 4.099573 TGAGAATGTTAGAGGATCCGGTTC 59.900 45.833 5.98 1.67 33.66 3.62
568 569 3.388350 AGAATGTTAGAGGATCCGGTTCC 59.612 47.826 22.05 22.05 33.66 3.62
569 570 2.241281 TGTTAGAGGATCCGGTTCCA 57.759 50.000 29.14 9.82 38.32 3.53
570 571 2.759355 TGTTAGAGGATCCGGTTCCAT 58.241 47.619 29.14 20.37 38.32 3.41
571 572 3.918566 TGTTAGAGGATCCGGTTCCATA 58.081 45.455 29.14 19.47 38.32 2.74
572 573 3.640029 TGTTAGAGGATCCGGTTCCATAC 59.360 47.826 29.14 20.45 38.32 2.39
573 574 1.329256 AGAGGATCCGGTTCCATACG 58.671 55.000 29.14 0.00 38.32 3.06
578 579 2.512974 CCGGTTCCATACGGCACC 60.513 66.667 0.00 0.00 44.59 5.01
579 580 2.512974 CGGTTCCATACGGCACCC 60.513 66.667 0.00 0.00 45.20 4.61
591 592 4.954933 GCACCCGCCTTTCTCATA 57.045 55.556 0.00 0.00 0.00 2.15
592 593 3.168773 GCACCCGCCTTTCTCATAA 57.831 52.632 0.00 0.00 0.00 1.90
593 594 1.017387 GCACCCGCCTTTCTCATAAG 58.983 55.000 0.00 0.00 0.00 1.73
594 595 1.668419 CACCCGCCTTTCTCATAAGG 58.332 55.000 0.00 0.00 46.14 2.69
595 596 1.209504 CACCCGCCTTTCTCATAAGGA 59.790 52.381 6.59 0.00 46.28 3.36
596 597 2.127708 ACCCGCCTTTCTCATAAGGAT 58.872 47.619 6.59 0.00 46.28 3.24
597 598 2.104963 ACCCGCCTTTCTCATAAGGATC 59.895 50.000 6.59 0.00 46.28 3.36
598 599 2.370189 CCCGCCTTTCTCATAAGGATCT 59.630 50.000 6.59 0.00 46.28 2.75
599 600 3.181450 CCCGCCTTTCTCATAAGGATCTT 60.181 47.826 6.59 0.00 46.28 2.40
600 601 4.061596 CCGCCTTTCTCATAAGGATCTTC 58.938 47.826 6.59 0.00 46.28 2.87
601 602 3.738282 CGCCTTTCTCATAAGGATCTTCG 59.262 47.826 6.59 0.00 46.28 3.79
602 603 4.061596 GCCTTTCTCATAAGGATCTTCGG 58.938 47.826 6.59 0.00 46.28 4.30
603 604 4.202264 GCCTTTCTCATAAGGATCTTCGGA 60.202 45.833 6.59 0.00 46.28 4.55
604 605 5.537188 CCTTTCTCATAAGGATCTTCGGAG 58.463 45.833 0.00 0.00 46.28 4.63
605 606 5.303078 CCTTTCTCATAAGGATCTTCGGAGA 59.697 44.000 0.00 0.00 46.28 3.71
606 607 6.398234 TTTCTCATAAGGATCTTCGGAGAG 57.602 41.667 0.00 0.00 38.43 3.20
607 608 4.402829 TCTCATAAGGATCTTCGGAGAGG 58.597 47.826 0.00 0.00 38.43 3.69
608 609 3.501349 TCATAAGGATCTTCGGAGAGGG 58.499 50.000 0.00 0.00 38.43 4.30
609 610 3.117093 TCATAAGGATCTTCGGAGAGGGT 60.117 47.826 0.00 0.00 38.43 4.34
610 611 2.255770 AAGGATCTTCGGAGAGGGTT 57.744 50.000 0.00 0.00 38.43 4.11
611 612 3.399952 AAGGATCTTCGGAGAGGGTTA 57.600 47.619 0.00 0.00 38.43 2.85
612 613 3.621682 AGGATCTTCGGAGAGGGTTAT 57.378 47.619 0.00 0.00 38.43 1.89
613 614 3.502356 AGGATCTTCGGAGAGGGTTATC 58.498 50.000 0.00 0.00 38.43 1.75
614 615 2.563620 GGATCTTCGGAGAGGGTTATCC 59.436 54.545 0.00 0.00 38.43 2.59
615 616 2.840640 TCTTCGGAGAGGGTTATCCA 57.159 50.000 0.00 0.00 38.43 3.41
616 617 3.330126 TCTTCGGAGAGGGTTATCCAT 57.670 47.619 0.00 0.00 38.43 3.41
617 618 3.654273 TCTTCGGAGAGGGTTATCCATT 58.346 45.455 0.00 0.00 38.43 3.16
618 619 3.388024 TCTTCGGAGAGGGTTATCCATTG 59.612 47.826 0.00 0.00 38.43 2.82
619 620 3.040655 TCGGAGAGGGTTATCCATTGA 57.959 47.619 0.00 0.00 34.21 2.57
620 621 3.587498 TCGGAGAGGGTTATCCATTGAT 58.413 45.455 0.00 0.00 34.21 2.57
801 804 1.786579 CGCCAAGTAAAGCAAAGCAAC 59.213 47.619 0.00 0.00 0.00 4.17
830 833 2.034221 AAGCGTCCCTTTCCCAGC 59.966 61.111 0.00 0.00 0.00 4.85
835 838 3.009115 TCCCTTTCCCAGCCTCCG 61.009 66.667 0.00 0.00 0.00 4.63
886 889 1.536943 ATAATCCTCCGCTCCTCGCC 61.537 60.000 0.00 0.00 36.73 5.54
941 947 2.853963 GAGACGTCGAGGAAAGAGAAC 58.146 52.381 12.85 0.00 0.00 3.01
942 948 1.197264 AGACGTCGAGGAAAGAGAACG 59.803 52.381 12.85 0.00 0.00 3.95
969 980 2.551912 AAAGCCGCGGGTTTCTGTG 61.552 57.895 41.11 9.18 41.23 3.66
984 995 0.792640 CTGTGGAGTTCATGTGACGC 59.207 55.000 0.00 0.00 0.00 5.19
985 996 0.943835 TGTGGAGTTCATGTGACGCG 60.944 55.000 3.53 3.53 0.00 6.01
986 997 2.027073 TGGAGTTCATGTGACGCGC 61.027 57.895 5.73 0.00 0.00 6.86
987 998 2.391821 GAGTTCATGTGACGCGCG 59.608 61.111 30.96 30.96 0.00 6.86
988 999 3.686392 GAGTTCATGTGACGCGCGC 62.686 63.158 32.58 23.91 0.00 6.86
1063 1083 1.156645 CGGCTACGGCTACTCGTACT 61.157 60.000 0.00 0.00 43.59 2.73
1071 1091 1.426621 CTACTCGTACTCGCGGCAA 59.573 57.895 6.13 0.00 36.96 4.52
1299 1334 0.664466 ACTCGTACTCGTCGTCGTCA 60.664 55.000 1.33 0.00 38.33 4.35
1428 1463 3.826754 CTGGCGCTCGTCCTGCTA 61.827 66.667 7.64 0.00 0.00 3.49
1566 1612 0.672401 CATTTGGTCACGTACGGGCT 60.672 55.000 21.06 0.00 0.00 5.19
1574 1620 0.039437 CACGTACGGGCTATGCTAGG 60.039 60.000 21.06 0.00 0.00 3.02
1601 1675 7.604545 CTAGCTAACTAGGCAAGGAAATTATCC 59.395 40.741 0.00 0.00 44.09 2.59
1645 1721 3.259064 GCTGCTTAAACCGTCAGATGTA 58.741 45.455 0.00 0.00 0.00 2.29
1651 1727 5.753921 GCTTAAACCGTCAGATGTATTAGCT 59.246 40.000 0.00 0.00 0.00 3.32
1671 1747 6.597832 AGCTGTCAGAAAACTATCACTAGT 57.402 37.500 3.32 0.00 39.97 2.57
1706 1782 8.630054 AGGATGTAAACTGCAATAAACTGTTA 57.370 30.769 0.00 0.00 0.00 2.41
1833 1918 7.224362 ACACTACTCGTACTGTACTGTATCATC 59.776 40.741 14.73 2.79 0.00 2.92
1836 1921 7.712264 ACTCGTACTGTACTGTATCATCTAC 57.288 40.000 14.73 3.35 0.00 2.59
1924 2129 2.613595 AGAACGAAACCGGTTAACCAAC 59.386 45.455 22.60 10.84 35.14 3.77
1944 2160 7.940850 ACCAACGTACTACTTTGAGTACTTTA 58.059 34.615 10.94 0.00 46.47 1.85
1982 2198 9.346725 CTTTGAATAAATTTTCTCTCCCGAAAG 57.653 33.333 0.00 0.00 34.67 2.62
2008 2224 8.625786 GGAACCAAAGGACAATAAGTTACTAA 57.374 34.615 0.00 0.00 0.00 2.24
2069 2285 6.596106 TGCTGCCAGTTAACTAATCGAAATTA 59.404 34.615 8.04 0.00 0.00 1.40
2070 2286 7.126398 GCTGCCAGTTAACTAATCGAAATTAG 58.874 38.462 8.04 4.58 46.62 1.73
2071 2287 7.011828 TGCCAGTTAACTAATCGAAATTAGC 57.988 36.000 8.04 0.00 45.60 3.09
2072 2288 6.821665 TGCCAGTTAACTAATCGAAATTAGCT 59.178 34.615 8.04 0.00 45.60 3.32
2089 2343 5.917541 TTAGCTAGTGAAAAACGTGGAAG 57.082 39.130 0.00 0.00 0.00 3.46
2095 2349 0.028902 GAAAAACGTGGAAGCGCTGT 59.971 50.000 12.58 0.00 34.88 4.40
2097 2351 0.865769 AAAACGTGGAAGCGCTGTAG 59.134 50.000 12.58 3.66 34.88 2.74
2103 2357 0.036388 TGGAAGCGCTGTAGGAAAGG 60.036 55.000 12.58 0.00 0.00 3.11
2131 2401 9.905171 AGAAAGAAAGAAAGAGAAATGCAATAC 57.095 29.630 0.00 0.00 0.00 1.89
2132 2402 9.683069 GAAAGAAAGAAAGAGAAATGCAATACA 57.317 29.630 0.00 0.00 0.00 2.29
2133 2403 9.688592 AAAGAAAGAAAGAGAAATGCAATACAG 57.311 29.630 0.00 0.00 0.00 2.74
2134 2404 8.401490 AGAAAGAAAGAGAAATGCAATACAGT 57.599 30.769 0.00 0.00 0.00 3.55
2135 2405 9.507329 AGAAAGAAAGAGAAATGCAATACAGTA 57.493 29.630 0.00 0.00 0.00 2.74
2141 2411 9.890629 AAAGAGAAATGCAATACAGTATACAGA 57.109 29.630 5.50 0.00 0.00 3.41
2149 2419 5.523916 GCAATACAGTATACAGAACAGGGTG 59.476 44.000 5.50 0.00 0.00 4.61
2222 2493 4.739195 CGATCTCTTTCTTCTCTTTCGGT 58.261 43.478 0.00 0.00 0.00 4.69
2264 2535 3.243434 GCACCTTTCTGCGCTACTAGATA 60.243 47.826 9.73 0.00 0.00 1.98
2327 2599 4.572389 CCCAAGTATTCCAGATTCTTGTCG 59.428 45.833 0.00 0.00 35.26 4.35
2355 2627 6.472016 TCTGTATGTGACATTTCTTGGCTTA 58.528 36.000 2.29 0.00 37.45 3.09
2395 2669 2.094700 CGGAATCTCACGGAGAAGTTCA 60.095 50.000 5.50 0.00 42.27 3.18
2409 2683 1.163420 AGTTCATGTTGGCGTCGCAA 61.163 50.000 20.50 4.36 0.00 4.85
2428 2702 1.068250 GGGCTCGATTTCTCGGAGG 59.932 63.158 4.96 0.00 45.10 4.30
2429 2703 1.392710 GGGCTCGATTTCTCGGAGGA 61.393 60.000 4.96 0.00 45.10 3.71
2430 2704 0.031449 GGCTCGATTTCTCGGAGGAG 59.969 60.000 4.96 4.66 45.10 3.69
2433 2707 2.796735 GCTCGATTTCTCGGAGGAGTTC 60.797 54.545 4.96 0.00 45.10 3.01
2448 2722 5.048434 GGAGGAGTTCCATTTTCTTTCAGTG 60.048 44.000 0.28 0.00 46.01 3.66
2455 2729 3.070015 CCATTTTCTTTCAGTGGCACCTT 59.930 43.478 15.27 0.00 0.00 3.50
2457 2731 1.593196 TTCTTTCAGTGGCACCTTCG 58.407 50.000 15.27 0.49 0.00 3.79
2459 2733 1.228124 TTTCAGTGGCACCTTCGGG 60.228 57.895 15.27 0.00 41.87 5.14
2460 2734 1.701031 TTTCAGTGGCACCTTCGGGA 61.701 55.000 15.27 0.00 38.77 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 7.148853 GCTGAAACTTTGCAAGAACATCTAATG 60.149 37.037 0.00 0.00 0.00 1.90
5 6 6.865205 GCTGAAACTTTGCAAGAACATCTAAT 59.135 34.615 0.00 0.00 0.00 1.73
6 7 6.208644 GCTGAAACTTTGCAAGAACATCTAA 58.791 36.000 0.00 0.00 0.00 2.10
7 8 5.278463 GGCTGAAACTTTGCAAGAACATCTA 60.278 40.000 0.00 0.00 0.00 1.98
8 9 4.500375 GGCTGAAACTTTGCAAGAACATCT 60.500 41.667 0.00 0.00 0.00 2.90
9 10 3.737774 GGCTGAAACTTTGCAAGAACATC 59.262 43.478 0.00 0.00 0.00 3.06
10 11 3.132646 TGGCTGAAACTTTGCAAGAACAT 59.867 39.130 0.00 0.00 0.00 2.71
11 12 2.495270 TGGCTGAAACTTTGCAAGAACA 59.505 40.909 0.00 0.00 0.00 3.18
12 13 2.860136 GTGGCTGAAACTTTGCAAGAAC 59.140 45.455 0.00 0.00 0.00 3.01
13 14 2.495270 TGTGGCTGAAACTTTGCAAGAA 59.505 40.909 0.00 0.00 0.00 2.52
14 15 2.098614 TGTGGCTGAAACTTTGCAAGA 58.901 42.857 0.00 0.00 0.00 3.02
15 16 2.582728 TGTGGCTGAAACTTTGCAAG 57.417 45.000 0.00 0.00 0.00 4.01
16 17 3.325293 TTTGTGGCTGAAACTTTGCAA 57.675 38.095 0.00 0.00 0.00 4.08
17 18 3.540314 ATTTGTGGCTGAAACTTTGCA 57.460 38.095 0.00 0.00 0.00 4.08
18 19 5.982465 TTTATTTGTGGCTGAAACTTTGC 57.018 34.783 0.00 0.00 0.00 3.68
19 20 9.224058 CAAAATTTATTTGTGGCTGAAACTTTG 57.776 29.630 0.00 0.00 0.00 2.77
20 21 9.171877 TCAAAATTTATTTGTGGCTGAAACTTT 57.828 25.926 0.00 0.00 0.00 2.66
21 22 8.729805 TCAAAATTTATTTGTGGCTGAAACTT 57.270 26.923 0.00 0.00 0.00 2.66
22 23 7.442062 CCTCAAAATTTATTTGTGGCTGAAACT 59.558 33.333 8.54 0.00 36.61 2.66
23 24 7.440856 TCCTCAAAATTTATTTGTGGCTGAAAC 59.559 33.333 14.15 0.00 40.76 2.78
24 25 7.504403 TCCTCAAAATTTATTTGTGGCTGAAA 58.496 30.769 14.15 0.00 40.76 2.69
25 26 7.060383 TCCTCAAAATTTATTTGTGGCTGAA 57.940 32.000 14.15 0.00 40.76 3.02
26 27 6.662865 TCCTCAAAATTTATTTGTGGCTGA 57.337 33.333 14.15 1.18 40.76 4.26
27 28 5.349543 GCTCCTCAAAATTTATTTGTGGCTG 59.650 40.000 14.15 11.17 40.76 4.85
28 29 5.482006 GCTCCTCAAAATTTATTTGTGGCT 58.518 37.500 14.15 0.00 40.76 4.75
29 30 4.327087 CGCTCCTCAAAATTTATTTGTGGC 59.673 41.667 14.15 5.95 40.76 5.01
30 31 4.327087 GCGCTCCTCAAAATTTATTTGTGG 59.673 41.667 13.20 13.20 41.73 4.17
31 32 4.922692 TGCGCTCCTCAAAATTTATTTGTG 59.077 37.500 9.73 0.00 0.00 3.33
32 33 4.923281 GTGCGCTCCTCAAAATTTATTTGT 59.077 37.500 9.73 0.00 0.00 2.83
33 34 4.922692 TGTGCGCTCCTCAAAATTTATTTG 59.077 37.500 9.73 0.00 0.00 2.32
34 35 4.923281 GTGTGCGCTCCTCAAAATTTATTT 59.077 37.500 9.73 0.00 0.00 1.40
35 36 4.485163 GTGTGCGCTCCTCAAAATTTATT 58.515 39.130 9.73 0.00 0.00 1.40
36 37 3.119495 GGTGTGCGCTCCTCAAAATTTAT 60.119 43.478 9.73 0.00 0.00 1.40
37 38 2.227865 GGTGTGCGCTCCTCAAAATTTA 59.772 45.455 9.73 0.00 0.00 1.40
38 39 1.000274 GGTGTGCGCTCCTCAAAATTT 60.000 47.619 9.73 0.00 0.00 1.82
39 40 0.598065 GGTGTGCGCTCCTCAAAATT 59.402 50.000 9.73 0.00 0.00 1.82
40 41 0.537143 TGGTGTGCGCTCCTCAAAAT 60.537 50.000 18.48 0.00 0.00 1.82
41 42 0.749818 TTGGTGTGCGCTCCTCAAAA 60.750 50.000 18.48 2.67 0.00 2.44
42 43 0.749818 TTTGGTGTGCGCTCCTCAAA 60.750 50.000 18.48 14.84 0.00 2.69
43 44 0.537143 ATTTGGTGTGCGCTCCTCAA 60.537 50.000 18.48 9.56 0.00 3.02
44 45 0.323302 TATTTGGTGTGCGCTCCTCA 59.677 50.000 18.48 3.21 0.00 3.86
45 46 1.448985 TTATTTGGTGTGCGCTCCTC 58.551 50.000 18.48 0.83 0.00 3.71
46 47 1.904287 TTTATTTGGTGTGCGCTCCT 58.096 45.000 18.48 2.19 0.00 3.69
47 48 2.163412 TGATTTATTTGGTGTGCGCTCC 59.837 45.455 9.73 11.44 0.00 4.70
48 49 3.485947 TGATTTATTTGGTGTGCGCTC 57.514 42.857 9.73 5.51 0.00 5.03
49 50 4.175516 CAATGATTTATTTGGTGTGCGCT 58.824 39.130 9.73 0.00 0.00 5.92
50 51 3.242059 GCAATGATTTATTTGGTGTGCGC 60.242 43.478 0.00 0.00 0.00 6.09
51 52 4.175516 AGCAATGATTTATTTGGTGTGCG 58.824 39.130 0.00 0.00 0.00 5.34
52 53 7.593875 TTTAGCAATGATTTATTTGGTGTGC 57.406 32.000 0.00 0.00 0.00 4.57
53 54 9.206870 ACTTTTAGCAATGATTTATTTGGTGTG 57.793 29.630 0.00 0.00 0.00 3.82
54 55 9.206870 CACTTTTAGCAATGATTTATTTGGTGT 57.793 29.630 0.00 0.00 0.00 4.16
55 56 8.170553 GCACTTTTAGCAATGATTTATTTGGTG 58.829 33.333 0.00 0.00 0.00 4.17
56 57 7.877097 TGCACTTTTAGCAATGATTTATTTGGT 59.123 29.630 0.00 0.00 39.39 3.67
57 58 8.170553 GTGCACTTTTAGCAATGATTTATTTGG 58.829 33.333 10.32 0.00 44.64 3.28
58 59 8.710551 TGTGCACTTTTAGCAATGATTTATTTG 58.289 29.630 19.41 0.00 44.64 2.32
59 60 8.830201 TGTGCACTTTTAGCAATGATTTATTT 57.170 26.923 19.41 0.00 44.64 1.40
62 63 9.920133 TTTATGTGCACTTTTAGCAATGATTTA 57.080 25.926 19.41 0.00 44.64 1.40
63 64 8.711457 GTTTATGTGCACTTTTAGCAATGATTT 58.289 29.630 19.41 0.00 44.64 2.17
64 65 8.090214 AGTTTATGTGCACTTTTAGCAATGATT 58.910 29.630 19.41 0.00 44.64 2.57
65 66 7.605449 AGTTTATGTGCACTTTTAGCAATGAT 58.395 30.769 19.41 0.63 44.64 2.45
66 67 6.980593 AGTTTATGTGCACTTTTAGCAATGA 58.019 32.000 19.41 0.00 44.64 2.57
67 68 7.409661 CGAAGTTTATGTGCACTTTTAGCAATG 60.410 37.037 19.41 0.00 44.64 2.82
68 69 6.582295 CGAAGTTTATGTGCACTTTTAGCAAT 59.418 34.615 19.41 2.72 44.64 3.56
69 70 5.912396 CGAAGTTTATGTGCACTTTTAGCAA 59.088 36.000 19.41 0.00 44.64 3.91
70 71 5.237561 TCGAAGTTTATGTGCACTTTTAGCA 59.762 36.000 19.41 0.00 40.19 3.49
71 72 5.685841 TCGAAGTTTATGTGCACTTTTAGC 58.314 37.500 19.41 5.93 33.22 3.09
72 73 9.478019 CTATTCGAAGTTTATGTGCACTTTTAG 57.522 33.333 19.41 3.81 33.22 1.85
73 74 8.995220 ACTATTCGAAGTTTATGTGCACTTTTA 58.005 29.630 19.41 4.56 33.22 1.52
74 75 7.803189 CACTATTCGAAGTTTATGTGCACTTTT 59.197 33.333 19.41 2.66 33.22 2.27
75 76 7.172532 TCACTATTCGAAGTTTATGTGCACTTT 59.827 33.333 19.41 8.24 33.22 2.66
76 77 6.649141 TCACTATTCGAAGTTTATGTGCACTT 59.351 34.615 19.41 14.68 35.88 3.16
77 78 6.163476 TCACTATTCGAAGTTTATGTGCACT 58.837 36.000 19.41 6.22 0.00 4.40
78 79 6.403333 TCACTATTCGAAGTTTATGTGCAC 57.597 37.500 10.75 10.75 0.00 4.57
79 80 7.041721 AGATCACTATTCGAAGTTTATGTGCA 58.958 34.615 3.35 0.00 0.00 4.57
80 81 7.470289 AGATCACTATTCGAAGTTTATGTGC 57.530 36.000 3.35 0.00 0.00 4.57
105 106 9.883142 AAATAACATTTCAGGAGTCAACAAAAA 57.117 25.926 0.00 0.00 0.00 1.94
106 107 9.311916 CAAATAACATTTCAGGAGTCAACAAAA 57.688 29.630 0.00 0.00 0.00 2.44
107 108 8.474025 ACAAATAACATTTCAGGAGTCAACAAA 58.526 29.630 0.00 0.00 0.00 2.83
108 109 7.920151 CACAAATAACATTTCAGGAGTCAACAA 59.080 33.333 0.00 0.00 0.00 2.83
109 110 7.424803 CACAAATAACATTTCAGGAGTCAACA 58.575 34.615 0.00 0.00 0.00 3.33
110 111 6.863126 CCACAAATAACATTTCAGGAGTCAAC 59.137 38.462 0.00 0.00 0.00 3.18
111 112 6.775142 TCCACAAATAACATTTCAGGAGTCAA 59.225 34.615 0.00 0.00 0.00 3.18
112 113 6.303054 TCCACAAATAACATTTCAGGAGTCA 58.697 36.000 0.00 0.00 0.00 3.41
113 114 6.817765 TCCACAAATAACATTTCAGGAGTC 57.182 37.500 0.00 0.00 0.00 3.36
114 115 6.947733 TCATCCACAAATAACATTTCAGGAGT 59.052 34.615 0.00 0.00 0.00 3.85
115 116 7.395190 TCATCCACAAATAACATTTCAGGAG 57.605 36.000 0.00 0.00 0.00 3.69
116 117 7.773489 TTCATCCACAAATAACATTTCAGGA 57.227 32.000 0.00 0.00 0.00 3.86
117 118 8.090214 AGTTTCATCCACAAATAACATTTCAGG 58.910 33.333 0.00 0.00 0.00 3.86
118 119 9.480053 AAGTTTCATCCACAAATAACATTTCAG 57.520 29.630 0.00 0.00 0.00 3.02
119 120 9.829507 AAAGTTTCATCCACAAATAACATTTCA 57.170 25.926 0.00 0.00 0.00 2.69
121 122 8.558700 GCAAAGTTTCATCCACAAATAACATTT 58.441 29.630 0.00 0.00 0.00 2.32
122 123 7.714377 TGCAAAGTTTCATCCACAAATAACATT 59.286 29.630 0.00 0.00 0.00 2.71
123 124 7.215789 TGCAAAGTTTCATCCACAAATAACAT 58.784 30.769 0.00 0.00 0.00 2.71
124 125 6.577103 TGCAAAGTTTCATCCACAAATAACA 58.423 32.000 0.00 0.00 0.00 2.41
125 126 7.437862 TCTTGCAAAGTTTCATCCACAAATAAC 59.562 33.333 0.00 0.00 46.34 1.89
126 127 7.495901 TCTTGCAAAGTTTCATCCACAAATAA 58.504 30.769 0.00 0.00 46.34 1.40
127 128 7.048629 TCTTGCAAAGTTTCATCCACAAATA 57.951 32.000 0.00 0.00 46.34 1.40
128 129 5.916318 TCTTGCAAAGTTTCATCCACAAAT 58.084 33.333 0.00 0.00 46.34 2.32
129 130 5.336150 TCTTGCAAAGTTTCATCCACAAA 57.664 34.783 0.00 0.00 46.34 2.83
130 131 4.737352 GCTCTTGCAAAGTTTCATCCACAA 60.737 41.667 0.00 0.00 46.34 3.33
131 132 3.243501 GCTCTTGCAAAGTTTCATCCACA 60.244 43.478 0.00 0.00 46.34 4.17
132 133 3.311966 GCTCTTGCAAAGTTTCATCCAC 58.688 45.455 0.00 0.00 46.34 4.02
133 134 3.648339 GCTCTTGCAAAGTTTCATCCA 57.352 42.857 0.00 0.00 46.34 3.41
146 147 5.888105 ACATGATAAAACTGATGCTCTTGC 58.112 37.500 0.00 0.00 40.20 4.01
147 148 8.024865 TCAAACATGATAAAACTGATGCTCTTG 58.975 33.333 0.00 0.00 0.00 3.02
148 149 8.114331 TCAAACATGATAAAACTGATGCTCTT 57.886 30.769 0.00 0.00 0.00 2.85
149 150 7.692460 TCAAACATGATAAAACTGATGCTCT 57.308 32.000 0.00 0.00 0.00 4.09
150 151 7.972277 ACATCAAACATGATAAAACTGATGCTC 59.028 33.333 12.12 0.00 41.40 4.26
151 152 7.833786 ACATCAAACATGATAAAACTGATGCT 58.166 30.769 12.12 1.59 41.40 3.79
152 153 7.221452 GGACATCAAACATGATAAAACTGATGC 59.779 37.037 12.12 7.17 41.40 3.91
153 154 8.464404 AGGACATCAAACATGATAAAACTGATG 58.536 33.333 0.00 6.38 42.69 3.07
154 155 8.585471 AGGACATCAAACATGATAAAACTGAT 57.415 30.769 0.00 0.00 0.00 2.90
155 156 8.946085 GTAGGACATCAAACATGATAAAACTGA 58.054 33.333 0.00 0.00 0.00 3.41
156 157 8.729756 TGTAGGACATCAAACATGATAAAACTG 58.270 33.333 0.00 0.00 0.00 3.16
157 158 8.862325 TGTAGGACATCAAACATGATAAAACT 57.138 30.769 0.00 0.00 0.00 2.66
158 159 8.730680 ACTGTAGGACATCAAACATGATAAAAC 58.269 33.333 0.00 0.00 0.00 2.43
159 160 8.862325 ACTGTAGGACATCAAACATGATAAAA 57.138 30.769 0.00 0.00 0.00 1.52
160 161 8.862325 AACTGTAGGACATCAAACATGATAAA 57.138 30.769 0.00 0.00 0.00 1.40
161 162 8.862325 AAACTGTAGGACATCAAACATGATAA 57.138 30.769 0.00 0.00 0.00 1.75
162 163 7.277760 CGAAACTGTAGGACATCAAACATGATA 59.722 37.037 0.00 0.00 0.00 2.15
163 164 6.092670 CGAAACTGTAGGACATCAAACATGAT 59.907 38.462 0.00 0.00 0.00 2.45
164 165 5.408299 CGAAACTGTAGGACATCAAACATGA 59.592 40.000 0.00 0.00 0.00 3.07
165 166 5.390885 CCGAAACTGTAGGACATCAAACATG 60.391 44.000 0.00 0.00 0.00 3.21
166 167 4.695455 CCGAAACTGTAGGACATCAAACAT 59.305 41.667 0.00 0.00 0.00 2.71
167 168 4.062293 CCGAAACTGTAGGACATCAAACA 58.938 43.478 0.00 0.00 0.00 2.83
168 169 4.312443 TCCGAAACTGTAGGACATCAAAC 58.688 43.478 0.00 0.00 0.00 2.93
169 170 4.039973 ACTCCGAAACTGTAGGACATCAAA 59.960 41.667 0.00 0.00 0.00 2.69
170 171 3.576982 ACTCCGAAACTGTAGGACATCAA 59.423 43.478 0.00 0.00 0.00 2.57
171 172 3.162666 ACTCCGAAACTGTAGGACATCA 58.837 45.455 0.00 0.00 0.00 3.07
172 173 3.870633 ACTCCGAAACTGTAGGACATC 57.129 47.619 0.00 0.00 0.00 3.06
173 174 4.618920 AAACTCCGAAACTGTAGGACAT 57.381 40.909 0.00 0.00 0.00 3.06
174 175 4.411256 AAAACTCCGAAACTGTAGGACA 57.589 40.909 0.00 0.00 0.00 4.02
220 221 8.677300 GCCTTCATAGACAGTGAATGAATAAAA 58.323 33.333 15.56 1.15 38.55 1.52
221 222 7.011389 CGCCTTCATAGACAGTGAATGAATAAA 59.989 37.037 15.56 1.40 38.55 1.40
222 223 6.479990 CGCCTTCATAGACAGTGAATGAATAA 59.520 38.462 15.56 1.65 38.55 1.40
223 224 5.985530 CGCCTTCATAGACAGTGAATGAATA 59.014 40.000 15.56 2.15 38.55 1.75
224 225 4.813161 CGCCTTCATAGACAGTGAATGAAT 59.187 41.667 15.56 0.00 38.55 2.57
225 226 4.183865 CGCCTTCATAGACAGTGAATGAA 58.816 43.478 14.87 14.87 37.30 2.57
226 227 3.195610 ACGCCTTCATAGACAGTGAATGA 59.804 43.478 0.00 0.21 35.26 2.57
227 228 3.525537 ACGCCTTCATAGACAGTGAATG 58.474 45.455 0.00 0.00 35.26 2.67
228 229 3.895232 ACGCCTTCATAGACAGTGAAT 57.105 42.857 0.00 0.00 35.26 2.57
229 230 3.130516 CCTACGCCTTCATAGACAGTGAA 59.869 47.826 0.00 0.00 34.63 3.18
230 231 2.688446 CCTACGCCTTCATAGACAGTGA 59.312 50.000 0.00 0.00 0.00 3.41
231 232 2.223829 CCCTACGCCTTCATAGACAGTG 60.224 54.545 0.00 0.00 0.00 3.66
232 233 2.032620 CCCTACGCCTTCATAGACAGT 58.967 52.381 0.00 0.00 0.00 3.55
233 234 1.341531 CCCCTACGCCTTCATAGACAG 59.658 57.143 0.00 0.00 0.00 3.51
234 235 1.410004 CCCCTACGCCTTCATAGACA 58.590 55.000 0.00 0.00 0.00 3.41
235 236 0.033642 GCCCCTACGCCTTCATAGAC 59.966 60.000 0.00 0.00 0.00 2.59
236 237 0.397957 TGCCCCTACGCCTTCATAGA 60.398 55.000 0.00 0.00 0.00 1.98
237 238 0.034059 CTGCCCCTACGCCTTCATAG 59.966 60.000 0.00 0.00 0.00 2.23
238 239 1.407656 CCTGCCCCTACGCCTTCATA 61.408 60.000 0.00 0.00 0.00 2.15
239 240 2.746375 CCTGCCCCTACGCCTTCAT 61.746 63.158 0.00 0.00 0.00 2.57
240 241 3.399181 CCTGCCCCTACGCCTTCA 61.399 66.667 0.00 0.00 0.00 3.02
241 242 2.595009 CTTCCTGCCCCTACGCCTTC 62.595 65.000 0.00 0.00 0.00 3.46
242 243 2.609610 TTCCTGCCCCTACGCCTT 60.610 61.111 0.00 0.00 0.00 4.35
243 244 3.083997 CTTCCTGCCCCTACGCCT 61.084 66.667 0.00 0.00 0.00 5.52
244 245 3.400054 ACTTCCTGCCCCTACGCC 61.400 66.667 0.00 0.00 0.00 5.68
245 246 2.125106 CACTTCCTGCCCCTACGC 60.125 66.667 0.00 0.00 0.00 4.42
246 247 1.338136 ATCCACTTCCTGCCCCTACG 61.338 60.000 0.00 0.00 0.00 3.51
247 248 0.470341 GATCCACTTCCTGCCCCTAC 59.530 60.000 0.00 0.00 0.00 3.18
248 249 0.694444 GGATCCACTTCCTGCCCCTA 60.694 60.000 6.95 0.00 32.68 3.53
249 250 2.003548 GGATCCACTTCCTGCCCCT 61.004 63.158 6.95 0.00 32.68 4.79
250 251 0.694444 TAGGATCCACTTCCTGCCCC 60.694 60.000 15.82 0.00 45.85 5.80
251 252 1.439543 ATAGGATCCACTTCCTGCCC 58.560 55.000 15.82 0.00 45.85 5.36
252 253 3.391296 TGTTATAGGATCCACTTCCTGCC 59.609 47.826 15.82 0.00 45.85 4.85
253 254 4.689612 TGTTATAGGATCCACTTCCTGC 57.310 45.455 15.82 0.00 45.85 4.85
254 255 5.545723 AGGATGTTATAGGATCCACTTCCTG 59.454 44.000 25.12 0.00 45.85 3.86
256 257 5.544176 TGAGGATGTTATAGGATCCACTTCC 59.456 44.000 19.63 19.63 40.72 3.46
257 258 6.672266 TGAGGATGTTATAGGATCCACTTC 57.328 41.667 15.82 10.44 40.72 3.01
258 259 6.043706 CCTTGAGGATGTTATAGGATCCACTT 59.956 42.308 15.82 1.03 40.72 3.16
259 260 5.545723 CCTTGAGGATGTTATAGGATCCACT 59.454 44.000 15.82 2.63 40.72 4.00
260 261 5.280215 CCCTTGAGGATGTTATAGGATCCAC 60.280 48.000 15.82 3.51 40.72 4.02
261 262 4.846367 CCCTTGAGGATGTTATAGGATCCA 59.154 45.833 15.82 0.00 40.72 3.41
262 263 5.094387 TCCCTTGAGGATGTTATAGGATCC 58.906 45.833 2.48 2.48 40.93 3.36
276 277 2.009042 GCTTCGTGACATCCCTTGAGG 61.009 57.143 0.00 0.00 0.00 3.86
277 278 1.066573 AGCTTCGTGACATCCCTTGAG 60.067 52.381 0.00 0.00 0.00 3.02
278 279 0.976641 AGCTTCGTGACATCCCTTGA 59.023 50.000 0.00 0.00 0.00 3.02
279 280 2.271800 GTAGCTTCGTGACATCCCTTG 58.728 52.381 0.00 0.00 0.00 3.61
280 281 1.899814 TGTAGCTTCGTGACATCCCTT 59.100 47.619 0.00 0.00 0.00 3.95
281 282 1.478510 CTGTAGCTTCGTGACATCCCT 59.521 52.381 0.00 0.00 0.00 4.20
282 283 1.204941 ACTGTAGCTTCGTGACATCCC 59.795 52.381 0.00 0.00 0.00 3.85
283 284 2.656560 ACTGTAGCTTCGTGACATCC 57.343 50.000 0.00 0.00 0.00 3.51
284 285 6.470160 CATTTTACTGTAGCTTCGTGACATC 58.530 40.000 0.00 0.00 0.00 3.06
285 286 5.163854 GCATTTTACTGTAGCTTCGTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
286 287 4.151689 GCATTTTACTGTAGCTTCGTGACA 59.848 41.667 0.00 0.00 0.00 3.58
287 288 4.151689 TGCATTTTACTGTAGCTTCGTGAC 59.848 41.667 0.00 0.00 0.00 3.67
288 289 4.311606 TGCATTTTACTGTAGCTTCGTGA 58.688 39.130 0.00 0.00 0.00 4.35
289 290 4.661993 TGCATTTTACTGTAGCTTCGTG 57.338 40.909 0.00 0.00 0.00 4.35
290 291 4.695455 ACATGCATTTTACTGTAGCTTCGT 59.305 37.500 0.00 0.00 0.00 3.85
291 292 5.221891 ACATGCATTTTACTGTAGCTTCG 57.778 39.130 0.00 0.00 0.00 3.79
295 296 8.943925 CGTTTTATACATGCATTTTACTGTAGC 58.056 33.333 0.00 0.00 0.00 3.58
298 299 9.554724 CTTCGTTTTATACATGCATTTTACTGT 57.445 29.630 0.00 0.00 0.00 3.55
299 300 9.767684 TCTTCGTTTTATACATGCATTTTACTG 57.232 29.630 0.00 0.00 0.00 2.74
302 303 9.781834 CCTTCTTCGTTTTATACATGCATTTTA 57.218 29.630 0.00 0.00 0.00 1.52
303 304 7.759433 CCCTTCTTCGTTTTATACATGCATTTT 59.241 33.333 0.00 0.00 0.00 1.82
304 305 7.122055 TCCCTTCTTCGTTTTATACATGCATTT 59.878 33.333 0.00 0.00 0.00 2.32
305 306 6.601613 TCCCTTCTTCGTTTTATACATGCATT 59.398 34.615 0.00 0.00 0.00 3.56
306 307 6.119536 TCCCTTCTTCGTTTTATACATGCAT 58.880 36.000 0.00 0.00 0.00 3.96
307 308 5.492895 TCCCTTCTTCGTTTTATACATGCA 58.507 37.500 0.00 0.00 0.00 3.96
308 309 6.038271 ACATCCCTTCTTCGTTTTATACATGC 59.962 38.462 0.00 0.00 0.00 4.06
309 310 7.279981 TGACATCCCTTCTTCGTTTTATACATG 59.720 37.037 0.00 0.00 0.00 3.21
310 311 7.335627 TGACATCCCTTCTTCGTTTTATACAT 58.664 34.615 0.00 0.00 0.00 2.29
311 312 6.703319 TGACATCCCTTCTTCGTTTTATACA 58.297 36.000 0.00 0.00 0.00 2.29
312 313 6.258068 CCTGACATCCCTTCTTCGTTTTATAC 59.742 42.308 0.00 0.00 0.00 1.47
313 314 6.346096 CCTGACATCCCTTCTTCGTTTTATA 58.654 40.000 0.00 0.00 0.00 0.98
314 315 5.186198 CCTGACATCCCTTCTTCGTTTTAT 58.814 41.667 0.00 0.00 0.00 1.40
315 316 4.564821 CCCTGACATCCCTTCTTCGTTTTA 60.565 45.833 0.00 0.00 0.00 1.52
316 317 3.412386 CCTGACATCCCTTCTTCGTTTT 58.588 45.455 0.00 0.00 0.00 2.43
317 318 2.290323 CCCTGACATCCCTTCTTCGTTT 60.290 50.000 0.00 0.00 0.00 3.60
318 319 1.279271 CCCTGACATCCCTTCTTCGTT 59.721 52.381 0.00 0.00 0.00 3.85
319 320 0.905357 CCCTGACATCCCTTCTTCGT 59.095 55.000 0.00 0.00 0.00 3.85
320 321 0.905357 ACCCTGACATCCCTTCTTCG 59.095 55.000 0.00 0.00 0.00 3.79
321 322 4.779993 ATAACCCTGACATCCCTTCTTC 57.220 45.455 0.00 0.00 0.00 2.87
322 323 6.848562 ATAATAACCCTGACATCCCTTCTT 57.151 37.500 0.00 0.00 0.00 2.52
323 324 6.013293 GCTATAATAACCCTGACATCCCTTCT 60.013 42.308 0.00 0.00 0.00 2.85
324 325 6.174049 GCTATAATAACCCTGACATCCCTTC 58.826 44.000 0.00 0.00 0.00 3.46
325 326 5.610982 TGCTATAATAACCCTGACATCCCTT 59.389 40.000 0.00 0.00 0.00 3.95
326 327 5.162637 TGCTATAATAACCCTGACATCCCT 58.837 41.667 0.00 0.00 0.00 4.20
327 328 5.499004 TGCTATAATAACCCTGACATCCC 57.501 43.478 0.00 0.00 0.00 3.85
328 329 5.705905 GGTTGCTATAATAACCCTGACATCC 59.294 44.000 6.55 0.00 40.31 3.51
329 330 6.204882 GTGGTTGCTATAATAACCCTGACATC 59.795 42.308 12.75 0.00 44.48 3.06
330 331 6.062095 GTGGTTGCTATAATAACCCTGACAT 58.938 40.000 12.75 0.00 44.48 3.06
331 332 5.190925 AGTGGTTGCTATAATAACCCTGACA 59.809 40.000 12.75 0.00 44.48 3.58
332 333 5.527582 CAGTGGTTGCTATAATAACCCTGAC 59.472 44.000 18.89 11.15 44.48 3.51
333 334 5.190925 ACAGTGGTTGCTATAATAACCCTGA 59.809 40.000 24.19 7.30 44.48 3.86
334 335 5.296780 CACAGTGGTTGCTATAATAACCCTG 59.703 44.000 20.31 20.31 44.48 4.45
335 336 5.437060 CACAGTGGTTGCTATAATAACCCT 58.563 41.667 12.75 8.27 44.48 4.34
336 337 4.036380 GCACAGTGGTTGCTATAATAACCC 59.964 45.833 1.84 6.71 44.48 4.11
337 338 4.260620 CGCACAGTGGTTGCTATAATAACC 60.261 45.833 1.84 9.73 45.15 2.85
338 339 4.260620 CCGCACAGTGGTTGCTATAATAAC 60.261 45.833 1.84 0.00 0.00 1.89
339 340 3.874543 CCGCACAGTGGTTGCTATAATAA 59.125 43.478 1.84 0.00 0.00 1.40
340 341 3.133183 TCCGCACAGTGGTTGCTATAATA 59.867 43.478 1.84 0.00 34.40 0.98
341 342 2.093181 TCCGCACAGTGGTTGCTATAAT 60.093 45.455 1.84 0.00 34.40 1.28
342 343 1.276705 TCCGCACAGTGGTTGCTATAA 59.723 47.619 1.84 0.00 34.40 0.98
343 344 0.899019 TCCGCACAGTGGTTGCTATA 59.101 50.000 1.84 0.00 34.40 1.31
344 345 0.253044 ATCCGCACAGTGGTTGCTAT 59.747 50.000 1.84 0.00 34.40 2.97
345 346 0.036164 AATCCGCACAGTGGTTGCTA 59.964 50.000 1.84 0.00 34.40 3.49
346 347 0.823356 AAATCCGCACAGTGGTTGCT 60.823 50.000 1.84 0.00 34.40 3.91
347 348 0.878416 TAAATCCGCACAGTGGTTGC 59.122 50.000 1.84 0.00 34.40 4.17
348 349 2.095768 CAGTAAATCCGCACAGTGGTTG 60.096 50.000 1.84 0.00 34.40 3.77
349 350 2.151202 CAGTAAATCCGCACAGTGGTT 58.849 47.619 1.84 0.00 34.40 3.67
350 351 1.071699 ACAGTAAATCCGCACAGTGGT 59.928 47.619 1.84 0.00 34.40 4.16
351 352 1.808411 ACAGTAAATCCGCACAGTGG 58.192 50.000 1.84 0.00 33.99 4.00
352 353 5.106442 TGTATACAGTAAATCCGCACAGTG 58.894 41.667 0.08 0.00 0.00 3.66
353 354 5.333299 TGTATACAGTAAATCCGCACAGT 57.667 39.130 0.08 0.00 0.00 3.55
354 355 6.656314 TTTGTATACAGTAAATCCGCACAG 57.344 37.500 5.56 0.00 0.00 3.66
355 356 7.436430 TTTTTGTATACAGTAAATCCGCACA 57.564 32.000 5.56 0.00 0.00 4.57
356 357 9.991388 TTATTTTTGTATACAGTAAATCCGCAC 57.009 29.630 21.60 0.00 0.00 5.34
397 398 9.935241 ACATACAAACAAAATTATGGTGCAATA 57.065 25.926 0.00 0.00 0.00 1.90
398 399 8.845413 ACATACAAACAAAATTATGGTGCAAT 57.155 26.923 0.00 0.00 0.00 3.56
399 400 9.764363 TTACATACAAACAAAATTATGGTGCAA 57.236 25.926 0.00 0.00 0.00 4.08
400 401 9.935241 ATTACATACAAACAAAATTATGGTGCA 57.065 25.926 0.00 0.00 0.00 4.57
492 493 9.045223 CCGTGATATTTCTTCTTCACATTCATA 57.955 33.333 0.00 0.00 38.68 2.15
493 494 7.554118 ACCGTGATATTTCTTCTTCACATTCAT 59.446 33.333 0.00 0.00 38.68 2.57
494 495 6.878923 ACCGTGATATTTCTTCTTCACATTCA 59.121 34.615 0.00 0.00 38.68 2.57
495 496 7.308782 ACCGTGATATTTCTTCTTCACATTC 57.691 36.000 0.00 0.00 38.68 2.67
496 497 7.687941 AACCGTGATATTTCTTCTTCACATT 57.312 32.000 0.00 0.00 38.68 2.71
497 498 8.041323 AGTAACCGTGATATTTCTTCTTCACAT 58.959 33.333 0.00 0.00 38.68 3.21
498 499 7.383687 AGTAACCGTGATATTTCTTCTTCACA 58.616 34.615 0.00 0.00 38.68 3.58
499 500 7.829378 AGTAACCGTGATATTTCTTCTTCAC 57.171 36.000 0.00 0.00 36.09 3.18
502 503 9.694137 GCTATAGTAACCGTGATATTTCTTCTT 57.306 33.333 0.84 0.00 0.00 2.52
503 504 9.080097 AGCTATAGTAACCGTGATATTTCTTCT 57.920 33.333 0.84 0.00 0.00 2.85
504 505 9.694137 AAGCTATAGTAACCGTGATATTTCTTC 57.306 33.333 0.84 0.00 0.00 2.87
507 508 9.059485 CGTAAGCTATAGTAACCGTGATATTTC 57.941 37.037 0.84 0.00 0.00 2.17
508 509 8.571336 ACGTAAGCTATAGTAACCGTGATATTT 58.429 33.333 0.84 0.00 45.62 1.40
509 510 8.019669 CACGTAAGCTATAGTAACCGTGATATT 58.980 37.037 21.69 0.00 45.09 1.28
510 511 7.388776 TCACGTAAGCTATAGTAACCGTGATAT 59.611 37.037 23.35 0.00 45.62 1.63
511 512 6.705825 TCACGTAAGCTATAGTAACCGTGATA 59.294 38.462 23.35 11.73 45.62 2.15
512 513 5.528690 TCACGTAAGCTATAGTAACCGTGAT 59.471 40.000 23.35 0.57 45.62 3.06
513 514 5.160699 CACGTAAGCTATAGTAACCGTGA 57.839 43.478 21.69 0.00 45.09 4.35
514 515 4.966366 GTCACGTAAGCTATAGTAACCGTG 59.034 45.833 20.87 20.87 44.03 4.94
515 516 4.635765 TGTCACGTAAGCTATAGTAACCGT 59.364 41.667 0.84 3.10 45.62 4.83
516 517 5.160699 TGTCACGTAAGCTATAGTAACCG 57.839 43.478 0.84 2.50 45.62 4.44
517 518 6.148264 GGATGTCACGTAAGCTATAGTAACC 58.852 44.000 0.84 0.00 45.62 2.85
518 519 6.016443 AGGGATGTCACGTAAGCTATAGTAAC 60.016 42.308 0.84 0.00 45.62 2.50
519 520 6.066690 AGGGATGTCACGTAAGCTATAGTAA 58.933 40.000 0.84 0.00 45.62 2.24
520 521 5.628130 AGGGATGTCACGTAAGCTATAGTA 58.372 41.667 0.84 0.00 45.62 1.82
521 522 4.471548 AGGGATGTCACGTAAGCTATAGT 58.528 43.478 0.84 0.00 45.62 2.12
522 523 5.009710 TCAAGGGATGTCACGTAAGCTATAG 59.990 44.000 0.00 0.00 45.62 1.31
523 524 4.891168 TCAAGGGATGTCACGTAAGCTATA 59.109 41.667 0.00 0.00 45.62 1.31
524 525 3.704566 TCAAGGGATGTCACGTAAGCTAT 59.295 43.478 0.00 0.00 45.62 2.97
525 526 3.093814 TCAAGGGATGTCACGTAAGCTA 58.906 45.455 0.00 0.00 45.62 3.32
526 527 1.899814 TCAAGGGATGTCACGTAAGCT 59.100 47.619 0.00 0.00 45.62 3.74
527 528 2.094182 TCTCAAGGGATGTCACGTAAGC 60.094 50.000 0.00 0.00 45.62 3.09
529 530 4.020573 ACATTCTCAAGGGATGTCACGTAA 60.021 41.667 0.00 0.00 0.00 3.18
530 531 3.513912 ACATTCTCAAGGGATGTCACGTA 59.486 43.478 0.00 0.00 0.00 3.57
531 532 2.303022 ACATTCTCAAGGGATGTCACGT 59.697 45.455 0.00 0.00 0.00 4.49
532 533 2.977914 ACATTCTCAAGGGATGTCACG 58.022 47.619 0.00 0.00 0.00 4.35
533 534 5.734720 TCTAACATTCTCAAGGGATGTCAC 58.265 41.667 0.00 0.00 0.00 3.67
534 535 5.104776 CCTCTAACATTCTCAAGGGATGTCA 60.105 44.000 0.00 0.00 0.00 3.58
535 536 5.129485 TCCTCTAACATTCTCAAGGGATGTC 59.871 44.000 0.00 0.00 0.00 3.06
536 537 5.032846 TCCTCTAACATTCTCAAGGGATGT 58.967 41.667 0.00 0.00 0.00 3.06
537 538 5.620738 TCCTCTAACATTCTCAAGGGATG 57.379 43.478 0.00 0.00 0.00 3.51
538 539 5.309282 GGATCCTCTAACATTCTCAAGGGAT 59.691 44.000 3.84 0.00 34.29 3.85
539 540 4.656112 GGATCCTCTAACATTCTCAAGGGA 59.344 45.833 3.84 0.00 0.00 4.20
540 541 4.502259 CGGATCCTCTAACATTCTCAAGGG 60.502 50.000 10.75 0.00 0.00 3.95
541 542 4.502259 CCGGATCCTCTAACATTCTCAAGG 60.502 50.000 10.75 0.00 0.00 3.61
542 543 4.100189 ACCGGATCCTCTAACATTCTCAAG 59.900 45.833 9.46 0.00 0.00 3.02
543 544 4.030913 ACCGGATCCTCTAACATTCTCAA 58.969 43.478 9.46 0.00 0.00 3.02
544 545 3.643237 ACCGGATCCTCTAACATTCTCA 58.357 45.455 9.46 0.00 0.00 3.27
545 546 4.501743 GGAACCGGATCCTCTAACATTCTC 60.502 50.000 22.87 0.00 36.50 2.87
546 547 3.388350 GGAACCGGATCCTCTAACATTCT 59.612 47.826 22.87 0.00 36.50 2.40
547 548 3.134081 TGGAACCGGATCCTCTAACATTC 59.866 47.826 28.84 8.25 40.35 2.67
548 549 3.112263 TGGAACCGGATCCTCTAACATT 58.888 45.455 28.84 0.00 40.35 2.71
549 550 2.759355 TGGAACCGGATCCTCTAACAT 58.241 47.619 28.84 0.00 40.35 2.71
550 551 2.241281 TGGAACCGGATCCTCTAACA 57.759 50.000 28.84 7.20 40.35 2.41
551 552 3.305199 CGTATGGAACCGGATCCTCTAAC 60.305 52.174 28.84 19.33 40.35 2.34
552 553 2.889045 CGTATGGAACCGGATCCTCTAA 59.111 50.000 28.84 11.38 40.35 2.10
553 554 2.511659 CGTATGGAACCGGATCCTCTA 58.488 52.381 28.84 18.09 40.35 2.43
554 555 1.329256 CGTATGGAACCGGATCCTCT 58.671 55.000 28.84 19.02 40.35 3.69
555 556 3.888093 CGTATGGAACCGGATCCTC 57.112 57.895 28.84 18.17 40.35 3.71
574 575 1.017387 CTTATGAGAAAGGCGGGTGC 58.983 55.000 0.00 0.00 41.71 5.01
575 576 1.209504 TCCTTATGAGAAAGGCGGGTG 59.790 52.381 0.00 0.00 44.89 4.61
576 577 1.580059 TCCTTATGAGAAAGGCGGGT 58.420 50.000 0.00 0.00 44.89 5.28
577 578 2.370189 AGATCCTTATGAGAAAGGCGGG 59.630 50.000 0.00 0.00 44.89 6.13
578 579 3.760580 AGATCCTTATGAGAAAGGCGG 57.239 47.619 0.00 0.00 44.89 6.13
579 580 3.738282 CGAAGATCCTTATGAGAAAGGCG 59.262 47.826 0.00 0.00 44.89 5.52
580 581 4.061596 CCGAAGATCCTTATGAGAAAGGC 58.938 47.826 0.00 0.00 44.89 4.35
581 582 5.303078 TCTCCGAAGATCCTTATGAGAAAGG 59.697 44.000 0.00 0.00 46.35 3.11
582 583 6.398234 TCTCCGAAGATCCTTATGAGAAAG 57.602 41.667 0.00 0.00 0.00 2.62
583 584 5.303078 CCTCTCCGAAGATCCTTATGAGAAA 59.697 44.000 0.00 0.00 0.00 2.52
584 585 4.830046 CCTCTCCGAAGATCCTTATGAGAA 59.170 45.833 0.00 0.00 0.00 2.87
585 586 4.402829 CCTCTCCGAAGATCCTTATGAGA 58.597 47.826 0.00 0.00 0.00 3.27
586 587 3.509575 CCCTCTCCGAAGATCCTTATGAG 59.490 52.174 0.00 0.00 0.00 2.90
587 588 3.117093 ACCCTCTCCGAAGATCCTTATGA 60.117 47.826 0.00 0.00 0.00 2.15
588 589 3.235200 ACCCTCTCCGAAGATCCTTATG 58.765 50.000 0.00 0.00 0.00 1.90
589 590 3.621682 ACCCTCTCCGAAGATCCTTAT 57.378 47.619 0.00 0.00 0.00 1.73
590 591 3.399952 AACCCTCTCCGAAGATCCTTA 57.600 47.619 0.00 0.00 0.00 2.69
591 592 2.255770 AACCCTCTCCGAAGATCCTT 57.744 50.000 0.00 0.00 0.00 3.36
592 593 3.502356 GATAACCCTCTCCGAAGATCCT 58.498 50.000 0.00 0.00 0.00 3.24
593 594 2.563620 GGATAACCCTCTCCGAAGATCC 59.436 54.545 0.00 0.00 0.00 3.36
594 595 3.231818 TGGATAACCCTCTCCGAAGATC 58.768 50.000 0.00 0.00 34.05 2.75
595 596 3.330126 TGGATAACCCTCTCCGAAGAT 57.670 47.619 0.00 0.00 34.05 2.40
596 597 2.840640 TGGATAACCCTCTCCGAAGA 57.159 50.000 0.00 0.00 34.05 2.87
597 598 3.388024 TCAATGGATAACCCTCTCCGAAG 59.612 47.826 0.00 0.00 34.05 3.79
598 599 3.380393 TCAATGGATAACCCTCTCCGAA 58.620 45.455 0.00 0.00 34.05 4.30
599 600 3.040655 TCAATGGATAACCCTCTCCGA 57.959 47.619 0.00 0.00 34.05 4.55
600 601 3.668447 CATCAATGGATAACCCTCTCCG 58.332 50.000 0.00 0.00 34.05 4.63
601 602 3.416156 GCATCAATGGATAACCCTCTCC 58.584 50.000 0.00 0.00 35.38 3.71
602 603 3.416156 GGCATCAATGGATAACCCTCTC 58.584 50.000 0.00 0.00 35.38 3.20
603 604 2.224621 CGGCATCAATGGATAACCCTCT 60.225 50.000 0.00 0.00 35.38 3.69
604 605 2.154462 CGGCATCAATGGATAACCCTC 58.846 52.381 0.00 0.00 35.38 4.30
605 606 1.774254 TCGGCATCAATGGATAACCCT 59.226 47.619 0.00 0.00 35.38 4.34
606 607 1.880027 GTCGGCATCAATGGATAACCC 59.120 52.381 0.00 0.00 34.81 4.11
607 608 1.531149 CGTCGGCATCAATGGATAACC 59.469 52.381 0.00 0.00 30.87 2.85
608 609 2.032894 CACGTCGGCATCAATGGATAAC 60.033 50.000 0.00 0.00 30.87 1.89
609 610 2.209273 CACGTCGGCATCAATGGATAA 58.791 47.619 0.00 0.00 30.87 1.75
610 611 1.138069 ACACGTCGGCATCAATGGATA 59.862 47.619 0.00 0.00 30.87 2.59
611 612 0.107703 ACACGTCGGCATCAATGGAT 60.108 50.000 0.00 0.00 0.00 3.41
612 613 0.321210 AACACGTCGGCATCAATGGA 60.321 50.000 0.00 0.00 0.00 3.41
613 614 0.096976 GAACACGTCGGCATCAATGG 59.903 55.000 0.00 0.00 0.00 3.16
614 615 0.247262 CGAACACGTCGGCATCAATG 60.247 55.000 0.00 0.00 46.45 2.82
615 616 2.078226 CGAACACGTCGGCATCAAT 58.922 52.632 0.00 0.00 46.45 2.57
616 617 3.544728 CGAACACGTCGGCATCAA 58.455 55.556 0.00 0.00 46.45 2.57
730 731 4.410400 GAGGGGGTGAAGGTGCGG 62.410 72.222 0.00 0.00 0.00 5.69
732 733 3.637273 ACGAGGGGGTGAAGGTGC 61.637 66.667 0.00 0.00 0.00 5.01
823 826 4.332543 AGGGACGGAGGCTGGGAA 62.333 66.667 0.00 0.00 0.00 3.97
830 833 0.470833 ATCATGGAGAGGGACGGAGG 60.471 60.000 0.00 0.00 0.00 4.30
835 838 2.105649 GGAAGGAATCATGGAGAGGGAC 59.894 54.545 0.00 0.00 0.00 4.46
923 927 1.604396 CGTTCTCTTTCCTCGACGTC 58.396 55.000 5.18 5.18 0.00 4.34
969 980 2.778679 GCGCGTCACATGAACTCC 59.221 61.111 8.43 0.00 0.00 3.85
984 995 2.797028 ATGATCGATCGTCGCGCG 60.797 61.111 26.76 26.76 40.21 6.86
985 996 2.710971 CCATGATCGATCGTCGCGC 61.711 63.158 17.27 0.00 40.21 6.86
986 997 2.710971 GCCATGATCGATCGTCGCG 61.711 63.158 19.24 10.50 40.21 5.87
987 998 2.710971 CGCCATGATCGATCGTCGC 61.711 63.158 22.69 22.69 40.21 5.19
988 999 1.062336 CTCGCCATGATCGATCGTCG 61.062 60.000 17.27 17.67 42.10 5.12
989 1000 1.340657 GCTCGCCATGATCGATCGTC 61.341 60.000 17.27 12.28 35.25 4.20
990 1001 1.372251 GCTCGCCATGATCGATCGT 60.372 57.895 20.03 17.37 35.25 3.73
1020 1040 2.044650 TCGCCGTGGTAGTAGCCT 60.045 61.111 0.00 0.00 0.00 4.58
1279 1308 0.246680 GACGACGACGAGTACGAGTG 60.247 60.000 15.32 0.00 42.66 3.51
1318 1353 2.506217 CCACGACATCACCGACGG 60.506 66.667 13.61 13.61 0.00 4.79
1321 1356 3.001902 GCTCCCACGACATCACCGA 62.002 63.158 0.00 0.00 0.00 4.69
1327 1362 2.267006 CTGCTGCTCCCACGACAT 59.733 61.111 0.00 0.00 0.00 3.06
1428 1463 2.370349 CACGACTGGTAGGAGATGAGT 58.630 52.381 0.00 0.00 0.00 3.41
1574 1620 3.821421 TTCCTTGCCTAGTTAGCTAGC 57.179 47.619 6.62 6.62 42.51 3.42
1575 1621 7.604545 GGATAATTTCCTTGCCTAGTTAGCTAG 59.395 40.741 6.64 6.64 41.78 3.42
1576 1622 7.450903 GGATAATTTCCTTGCCTAGTTAGCTA 58.549 38.462 0.00 0.00 41.78 3.32
1577 1623 6.299922 GGATAATTTCCTTGCCTAGTTAGCT 58.700 40.000 0.00 0.00 41.78 3.32
1578 1624 5.179555 CGGATAATTTCCTTGCCTAGTTAGC 59.820 44.000 5.50 0.00 42.99 3.09
1579 1625 5.179555 GCGGATAATTTCCTTGCCTAGTTAG 59.820 44.000 5.50 0.00 42.99 2.34
1592 1666 4.494855 GCTCTGTCAACTGCGGATAATTTC 60.495 45.833 0.00 0.00 0.00 2.17
1601 1675 0.390866 ATCCTGCTCTGTCAACTGCG 60.391 55.000 0.00 0.00 0.00 5.18
1605 1679 2.938869 GCAAAATCCTGCTCTGTCAAC 58.061 47.619 0.00 0.00 39.34 3.18
1628 1702 6.757010 ACAGCTAATACATCTGACGGTTTAAG 59.243 38.462 0.00 0.00 0.00 1.85
1629 1703 6.636705 ACAGCTAATACATCTGACGGTTTAA 58.363 36.000 0.00 0.00 0.00 1.52
1645 1721 8.754080 ACTAGTGATAGTTTTCTGACAGCTAAT 58.246 33.333 0.00 0.00 0.00 1.73
1651 1727 6.665992 ACCACTAGTGATAGTTTTCTGACA 57.334 37.500 24.68 0.00 0.00 3.58
1671 1747 4.947388 GCAGTTTACATCCTCCAAATACCA 59.053 41.667 0.00 0.00 0.00 3.25
1727 1812 6.684555 GCGAAATACAAGAATAGTGCTCTTTG 59.315 38.462 0.00 0.00 30.58 2.77
1770 1855 5.532406 AGAGCAATTTGTCAGCTAAAAGACA 59.468 36.000 0.69 0.69 42.55 3.41
1833 1918 8.365399 TCATAGAGAACCAAATTTATGCGTAG 57.635 34.615 0.00 0.00 0.00 3.51
1836 1921 6.662616 CCTCATAGAGAACCAAATTTATGCG 58.337 40.000 0.00 0.00 0.00 4.73
1908 2113 3.130633 AGTACGTTGGTTAACCGGTTTC 58.869 45.455 27.64 18.30 39.43 2.78
1982 2198 6.008331 AGTAACTTATTGTCCTTTGGTTCCC 58.992 40.000 0.00 0.00 0.00 3.97
1993 2209 8.075593 TCGGTGTTTGTTAGTAACTTATTGTC 57.924 34.615 14.00 0.21 0.00 3.18
2000 2216 4.682860 CGTGATCGGTGTTTGTTAGTAACT 59.317 41.667 14.00 0.00 0.00 2.24
2008 2224 0.319083 TAGGCGTGATCGGTGTTTGT 59.681 50.000 0.00 0.00 37.56 2.83
2036 2252 4.874970 AGTTAACTGGCAGCAAAATCAAG 58.125 39.130 15.89 0.00 0.00 3.02
2069 2285 2.548480 GCTTCCACGTTTTTCACTAGCT 59.452 45.455 0.00 0.00 0.00 3.32
2070 2286 2.661979 CGCTTCCACGTTTTTCACTAGC 60.662 50.000 0.00 0.00 0.00 3.42
2071 2287 2.661979 GCGCTTCCACGTTTTTCACTAG 60.662 50.000 0.00 0.00 34.88 2.57
2072 2288 1.262151 GCGCTTCCACGTTTTTCACTA 59.738 47.619 0.00 0.00 34.88 2.74
2079 2333 0.949105 CCTACAGCGCTTCCACGTTT 60.949 55.000 7.50 0.00 34.88 3.60
2089 2343 2.094762 TTCTTCCTTTCCTACAGCGC 57.905 50.000 0.00 0.00 0.00 5.92
2095 2349 8.714906 TCTCTTTCTTTCTTTCTTCCTTTCCTA 58.285 33.333 0.00 0.00 0.00 2.94
2097 2351 7.809546 TCTCTTTCTTTCTTTCTTCCTTTCC 57.190 36.000 0.00 0.00 0.00 3.13
2103 2357 8.862550 TTGCATTTCTCTTTCTTTCTTTCTTC 57.137 30.769 0.00 0.00 0.00 2.87
2131 2401 3.104512 TCCCACCCTGTTCTGTATACTG 58.895 50.000 4.17 3.79 0.00 2.74
2132 2402 3.484953 TCCCACCCTGTTCTGTATACT 57.515 47.619 4.17 0.00 0.00 2.12
2133 2403 4.704965 GATTCCCACCCTGTTCTGTATAC 58.295 47.826 0.00 0.00 0.00 1.47
2134 2404 3.386726 CGATTCCCACCCTGTTCTGTATA 59.613 47.826 0.00 0.00 0.00 1.47
2135 2405 2.170607 CGATTCCCACCCTGTTCTGTAT 59.829 50.000 0.00 0.00 0.00 2.29
2136 2406 1.553248 CGATTCCCACCCTGTTCTGTA 59.447 52.381 0.00 0.00 0.00 2.74
2137 2407 0.324943 CGATTCCCACCCTGTTCTGT 59.675 55.000 0.00 0.00 0.00 3.41
2141 2411 0.039618 AATGCGATTCCCACCCTGTT 59.960 50.000 0.00 0.00 0.00 3.16
2165 2435 7.136822 TCTGTATACTATCATGGCCAAAAGT 57.863 36.000 10.96 13.44 0.00 2.66
2222 2493 2.673043 GCTTTTACTCGTCCATCACCGA 60.673 50.000 0.00 0.00 0.00 4.69
2327 2599 3.878778 AGAAATGTCACATACAGAGGGC 58.121 45.455 0.00 0.00 42.70 5.19
2355 2627 0.976590 GGTCGCTAGGAAGGGAAGGT 60.977 60.000 0.00 0.00 45.31 3.50
2389 2663 1.163420 TGCGACGCCAACATGAACTT 61.163 50.000 18.69 0.00 0.00 2.66
2395 2669 3.055719 CCCTTGCGACGCCAACAT 61.056 61.111 18.69 0.00 0.00 2.71
2409 2683 1.395826 CCTCCGAGAAATCGAGCCCT 61.396 60.000 0.00 0.00 34.64 5.19
2428 2702 4.037923 TGCCACTGAAAGAAAATGGAACTC 59.962 41.667 0.00 0.00 37.43 3.01
2429 2703 3.960102 TGCCACTGAAAGAAAATGGAACT 59.040 39.130 0.00 0.00 37.43 3.01
2430 2704 4.051237 GTGCCACTGAAAGAAAATGGAAC 58.949 43.478 0.00 0.00 37.43 3.62
2433 2707 2.629617 AGGTGCCACTGAAAGAAAATGG 59.370 45.455 0.00 0.00 37.43 3.16
2435 2709 3.004734 CGAAGGTGCCACTGAAAGAAAAT 59.995 43.478 0.00 0.00 37.43 1.82
2466 2740 6.158598 GCAGAAAAATCTGGAGCACATTAAA 58.841 36.000 7.84 0.00 38.14 1.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.