Multiple sequence alignment - TraesCS6B01G352400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G352400 chr6B 100.000 6741 0 0 1 6741 618124236 618130976 0.000000e+00 12449.0
1 TraesCS6B01G352400 chr6B 93.108 798 27 11 1 773 652000491 652001285 0.000000e+00 1144.0
2 TraesCS6B01G352400 chr6B 93.095 782 31 9 2 771 52371942 52371172 0.000000e+00 1123.0
3 TraesCS6B01G352400 chr6B 92.503 787 38 10 3 774 18271216 18271996 0.000000e+00 1107.0
4 TraesCS6B01G352400 chr6B 98.529 68 0 1 3876 3942 618128048 618128115 1.190000e-22 119.0
5 TraesCS6B01G352400 chr6B 98.529 68 0 1 3813 3880 618128111 618128177 1.190000e-22 119.0
6 TraesCS6B01G352400 chr6D 90.279 2469 124 50 3876 6306 411207690 411210080 0.000000e+00 3123.0
7 TraesCS6B01G352400 chr6D 94.484 1396 56 9 2494 3880 411206373 411207756 0.000000e+00 2132.0
8 TraesCS6B01G352400 chr6D 87.885 974 71 24 839 1783 411204630 411205585 0.000000e+00 1101.0
9 TraesCS6B01G352400 chr6D 87.872 437 34 5 2058 2494 411205897 411206314 4.700000e-136 496.0
10 TraesCS6B01G352400 chr6D 87.168 452 32 11 6304 6732 411210161 411210609 2.180000e-134 490.0
11 TraesCS6B01G352400 chr6D 89.407 236 14 2 1780 2013 411205673 411205899 3.080000e-73 287.0
12 TraesCS6B01G352400 chr6D 97.059 34 1 0 2012 2045 88889035 88889002 2.630000e-04 58.4
13 TraesCS6B01G352400 chr6A 92.963 2018 104 21 4185 6191 555971384 555973374 0.000000e+00 2905.0
14 TraesCS6B01G352400 chr6A 92.193 1345 51 13 2543 3880 555969896 555971193 0.000000e+00 1853.0
15 TraesCS6B01G352400 chr6A 85.178 985 84 27 839 1780 555967999 555968964 0.000000e+00 953.0
16 TraesCS6B01G352400 chr6A 86.765 544 45 13 6215 6732 555973451 555973993 1.260000e-161 580.0
17 TraesCS6B01G352400 chr6A 93.902 246 9 4 3876 4117 555971126 555971369 3.840000e-97 366.0
18 TraesCS6B01G352400 chr6A 90.625 224 20 1 2058 2281 555969282 555969504 5.110000e-76 296.0
19 TraesCS6B01G352400 chr6A 85.345 232 19 8 1780 2008 555969060 555969279 6.800000e-55 226.0
20 TraesCS6B01G352400 chr6A 92.593 81 6 0 2494 2574 555969815 555969895 4.270000e-22 117.0
21 TraesCS6B01G352400 chr3B 94.430 790 26 6 2 773 698605546 698606335 0.000000e+00 1199.0
22 TraesCS6B01G352400 chr3B 93.726 797 28 10 1 784 666212148 666212935 0.000000e+00 1175.0
23 TraesCS6B01G352400 chr3B 93.216 796 33 9 1 776 683599364 683600158 0.000000e+00 1151.0
24 TraesCS6B01G352400 chr1B 94.297 789 25 8 1 773 43314393 43315177 0.000000e+00 1190.0
25 TraesCS6B01G352400 chr1B 97.143 35 1 0 2012 2046 429763235 429763269 7.300000e-05 60.2
26 TraesCS6B01G352400 chrUn 93.043 805 26 15 1 777 38943043 38942241 0.000000e+00 1149.0
27 TraesCS6B01G352400 chr5B 92.597 797 42 7 1 783 563117919 563118712 0.000000e+00 1129.0
28 TraesCS6B01G352400 chr5B 97.368 38 1 0 2009 2046 877697 877660 1.570000e-06 65.8
29 TraesCS6B01G352400 chr5B 97.143 35 1 0 2012 2046 564512041 564512007 7.300000e-05 60.2
30 TraesCS6B01G352400 chr2B 92.803 792 33 8 1 773 35036483 35035697 0.000000e+00 1125.0
31 TraesCS6B01G352400 chr2B 90.967 786 28 11 1 774 318179379 318178625 0.000000e+00 1018.0
32 TraesCS6B01G352400 chr2B 92.857 588 26 5 1 576 736402985 736402402 0.000000e+00 839.0
33 TraesCS6B01G352400 chr2B 92.982 285 7 4 1 274 785955755 785955473 2.930000e-108 403.0
34 TraesCS6B01G352400 chr4B 92.376 787 35 8 3 776 374732051 374731277 0.000000e+00 1098.0
35 TraesCS6B01G352400 chr4B 86.585 82 7 4 6293 6370 615142850 615142769 3.350000e-13 87.9
36 TraesCS6B01G352400 chr4B 82.022 89 10 3 6271 6354 414269452 414269539 3.370000e-08 71.3
37 TraesCS6B01G352400 chr4B 97.143 35 1 0 2012 2046 246316492 246316526 7.300000e-05 60.2
38 TraesCS6B01G352400 chr7B 91.347 809 27 15 1 774 175894779 175895579 0.000000e+00 1066.0
39 TraesCS6B01G352400 chr7B 97.143 35 1 0 2011 2045 453124440 453124406 7.300000e-05 60.2
40 TraesCS6B01G352400 chr7D 84.000 100 10 3 6276 6370 63952325 63952227 2.590000e-14 91.6
41 TraesCS6B01G352400 chr7D 85.366 82 8 1 6288 6365 561703078 561702997 1.560000e-11 82.4
42 TraesCS6B01G352400 chr7D 86.667 75 6 2 6293 6363 30923544 30923470 5.600000e-11 80.5
43 TraesCS6B01G352400 chr7D 97.143 35 1 0 2012 2046 47415574 47415540 7.300000e-05 60.2
44 TraesCS6B01G352400 chr7D 97.059 34 1 0 2011 2044 457596135 457596168 2.630000e-04 58.4
45 TraesCS6B01G352400 chr7D 94.286 35 2 0 2008 2042 120529652 120529686 3.000000e-03 54.7
46 TraesCS6B01G352400 chr7D 100.000 28 0 0 2011 2038 467673064 467673037 1.200000e-02 52.8
47 TraesCS6B01G352400 chr4D 86.364 88 6 4 6288 6370 61904753 61904839 2.590000e-14 91.6
48 TraesCS6B01G352400 chr1A 86.207 87 8 1 6288 6370 68460683 68460769 2.590000e-14 91.6
49 TraesCS6B01G352400 chr1A 97.143 35 1 0 2012 2046 191861307 191861273 7.300000e-05 60.2
50 TraesCS6B01G352400 chr4A 83.673 98 11 5 6267 6363 692479436 692479343 3.350000e-13 87.9
51 TraesCS6B01G352400 chr4A 95.000 40 1 1 2008 2046 662287222 662287261 2.030000e-05 62.1
52 TraesCS6B01G352400 chr4A 95.000 40 1 1 2008 2046 662287688 662287727 2.030000e-05 62.1
53 TraesCS6B01G352400 chr1D 83.721 86 10 4 6288 6370 288548238 288548322 2.020000e-10 78.7
54 TraesCS6B01G352400 chr2D 80.000 105 15 4 6271 6370 542973870 542973973 9.380000e-09 73.1
55 TraesCS6B01G352400 chr2D 100.000 30 0 0 2017 2046 520649791 520649820 1.000000e-03 56.5
56 TraesCS6B01G352400 chr5A 97.222 36 1 0 2009 2044 3037692 3037727 2.030000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G352400 chr6B 618124236 618130976 6740 False 4229.0 12449 99.019333 1 6741 3 chr6B.!!$F3 6740
1 TraesCS6B01G352400 chr6B 652000491 652001285 794 False 1144.0 1144 93.108000 1 773 1 chr6B.!!$F2 772
2 TraesCS6B01G352400 chr6B 52371172 52371942 770 True 1123.0 1123 93.095000 2 771 1 chr6B.!!$R1 769
3 TraesCS6B01G352400 chr6B 18271216 18271996 780 False 1107.0 1107 92.503000 3 774 1 chr6B.!!$F1 771
4 TraesCS6B01G352400 chr6D 411204630 411210609 5979 False 1271.5 3123 89.515833 839 6732 6 chr6D.!!$F1 5893
5 TraesCS6B01G352400 chr6A 555967999 555973993 5994 False 912.0 2905 89.945500 839 6732 8 chr6A.!!$F1 5893
6 TraesCS6B01G352400 chr3B 698605546 698606335 789 False 1199.0 1199 94.430000 2 773 1 chr3B.!!$F3 771
7 TraesCS6B01G352400 chr3B 666212148 666212935 787 False 1175.0 1175 93.726000 1 784 1 chr3B.!!$F1 783
8 TraesCS6B01G352400 chr3B 683599364 683600158 794 False 1151.0 1151 93.216000 1 776 1 chr3B.!!$F2 775
9 TraesCS6B01G352400 chr1B 43314393 43315177 784 False 1190.0 1190 94.297000 1 773 1 chr1B.!!$F1 772
10 TraesCS6B01G352400 chrUn 38942241 38943043 802 True 1149.0 1149 93.043000 1 777 1 chrUn.!!$R1 776
11 TraesCS6B01G352400 chr5B 563117919 563118712 793 False 1129.0 1129 92.597000 1 783 1 chr5B.!!$F1 782
12 TraesCS6B01G352400 chr2B 35035697 35036483 786 True 1125.0 1125 92.803000 1 773 1 chr2B.!!$R1 772
13 TraesCS6B01G352400 chr2B 318178625 318179379 754 True 1018.0 1018 90.967000 1 774 1 chr2B.!!$R2 773
14 TraesCS6B01G352400 chr2B 736402402 736402985 583 True 839.0 839 92.857000 1 576 1 chr2B.!!$R3 575
15 TraesCS6B01G352400 chr4B 374731277 374732051 774 True 1098.0 1098 92.376000 3 776 1 chr4B.!!$R1 773
16 TraesCS6B01G352400 chr7B 175894779 175895579 800 False 1066.0 1066 91.347000 1 774 1 chr7B.!!$F1 773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1049 0.578211 GATCCGTCTCGACTCTCGAC 59.422 60.000 0.00 0.00 44.82 4.20 F
1951 2202 0.257616 GCATAGGTGCCCCCTTACAA 59.742 55.000 0.00 0.00 42.73 2.41 F
1952 2203 1.341581 GCATAGGTGCCCCCTTACAAA 60.342 52.381 0.00 0.00 42.73 2.83 F
3379 3831 1.272490 CTCGTCCACTTGAGGTAAGCA 59.728 52.381 0.00 0.00 40.16 3.91 F
3879 4334 2.652348 TGATTCCAGGGTTACCATTGGT 59.348 45.455 19.13 13.94 40.13 3.67 F
4878 5347 0.102844 TTGCACTGAACTTGGCTTGC 59.897 50.000 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2252 2515 0.754957 CTGTTGGGCCTTGTGTTCCA 60.755 55.000 4.53 0.00 0.00 3.53 R
3161 3613 1.355043 ACTCGAGTCTTAGACCACCCT 59.645 52.381 13.58 0.00 32.18 4.34 R
3924 4379 1.748732 TCACCATGGTAACCCTGGAA 58.251 50.000 19.28 0.00 34.74 3.53 R
4841 5310 2.664916 CAACACAAGCTAACATGGCAC 58.335 47.619 0.00 0.00 0.00 5.01 R
5704 6178 0.250553 TTTCCACGCCATCTTCGGTT 60.251 50.000 0.00 0.00 0.00 4.44 R
6490 7129 0.307760 CATTGGGCGCCGTAATTCTC 59.692 55.000 22.54 3.93 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
525 551 6.430616 TCTTATTCTCAATGATTGTGTGTGCA 59.569 34.615 4.93 0.00 0.00 4.57
586 646 4.216472 GTGTATGTGTGTGAGAGAGAGACA 59.784 45.833 0.00 0.00 0.00 3.41
779 861 6.145696 CACGGGCTCTTTTGCTAGTATATTAC 59.854 42.308 0.00 0.00 0.00 1.89
783 865 8.560374 GGGCTCTTTTGCTAGTATATTACAAAG 58.440 37.037 0.00 0.00 32.36 2.77
784 866 9.326413 GGCTCTTTTGCTAGTATATTACAAAGA 57.674 33.333 3.96 3.96 32.36 2.52
876 958 6.207928 TCCGCGATGTTTACGAGATTTATTA 58.792 36.000 8.23 0.00 32.88 0.98
877 959 6.864685 TCCGCGATGTTTACGAGATTTATTAT 59.135 34.615 8.23 0.00 32.88 1.28
882 964 7.148869 CGATGTTTACGAGATTTATTATGCCGA 60.149 37.037 0.00 0.00 0.00 5.54
889 971 6.128902 ACGAGATTTATTATGCCGATTCGTTC 60.129 38.462 5.20 0.00 34.35 3.95
891 973 5.411669 AGATTTATTATGCCGATTCGTTCCC 59.588 40.000 5.20 0.00 0.00 3.97
903 985 4.551892 CGATTCGTTCCCGTAAACAAAATG 59.448 41.667 0.00 0.00 35.01 2.32
906 988 5.594724 TCGTTCCCGTAAACAAAATGTAG 57.405 39.130 0.00 0.00 35.01 2.74
936 1043 1.818785 GACCGGATCCGTCTCGACT 60.819 63.158 31.22 5.58 37.81 4.18
937 1044 1.774046 GACCGGATCCGTCTCGACTC 61.774 65.000 31.22 10.68 37.81 3.36
938 1045 1.524165 CCGGATCCGTCTCGACTCT 60.524 63.158 31.22 0.00 37.81 3.24
939 1046 1.500512 CCGGATCCGTCTCGACTCTC 61.501 65.000 31.22 0.00 37.81 3.20
940 1047 1.823260 CGGATCCGTCTCGACTCTCG 61.823 65.000 26.35 0.00 36.54 4.04
942 1049 0.578211 GATCCGTCTCGACTCTCGAC 59.422 60.000 0.00 0.00 44.82 4.20
1138 1246 2.554365 CTTCGCGCTTCGGCTCAAAG 62.554 60.000 5.56 0.00 39.13 2.77
1172 1280 0.331616 CTCCTCCGGGGGAAACATTT 59.668 55.000 26.87 0.00 34.18 2.32
1176 1284 0.610785 TCCGGGGGAAACATTTGCTC 60.611 55.000 0.00 0.00 0.00 4.26
1180 1288 1.821136 GGGGGAAACATTTGCTCAGAG 59.179 52.381 0.00 0.00 29.58 3.35
1258 1366 1.915266 CTCTCCAGCCTGGTGGACA 60.915 63.158 13.80 3.67 41.99 4.02
1315 1423 2.360852 CTGCCCTGCCTGTTGGAG 60.361 66.667 0.00 0.00 34.57 3.86
1325 1434 0.319900 CCTGTTGGAGGTGACGACAG 60.320 60.000 5.96 5.96 37.02 3.51
1375 1499 2.171237 TGGGCAGATAGAGTGGTCATTG 59.829 50.000 0.00 0.00 0.00 2.82
1376 1500 2.216898 GGCAGATAGAGTGGTCATTGC 58.783 52.381 0.00 0.00 0.00 3.56
1383 1534 2.653726 AGAGTGGTCATTGCAACACAA 58.346 42.857 17.21 2.52 44.01 3.33
1388 1539 4.400884 AGTGGTCATTGCAACACAACTTTA 59.599 37.500 17.21 0.00 42.27 1.85
1399 1550 8.028540 TGCAACACAACTTTATAGTGATACAG 57.971 34.615 0.00 0.00 37.05 2.74
1400 1551 6.961554 GCAACACAACTTTATAGTGATACAGC 59.038 38.462 0.00 0.00 37.05 4.40
1401 1552 7.148407 GCAACACAACTTTATAGTGATACAGCT 60.148 37.037 0.00 0.00 37.05 4.24
1402 1553 8.721478 CAACACAACTTTATAGTGATACAGCTT 58.279 33.333 0.00 0.00 37.05 3.74
1403 1554 8.256611 ACACAACTTTATAGTGATACAGCTTG 57.743 34.615 0.00 0.00 37.05 4.01
1404 1555 8.094548 ACACAACTTTATAGTGATACAGCTTGA 58.905 33.333 0.00 0.00 37.05 3.02
1405 1556 8.383619 CACAACTTTATAGTGATACAGCTTGAC 58.616 37.037 0.00 0.00 35.33 3.18
1406 1557 7.549488 ACAACTTTATAGTGATACAGCTTGACC 59.451 37.037 0.00 0.00 34.01 4.02
1407 1558 6.583562 ACTTTATAGTGATACAGCTTGACCC 58.416 40.000 0.00 0.00 31.99 4.46
1408 1559 6.156256 ACTTTATAGTGATACAGCTTGACCCA 59.844 38.462 0.00 0.00 31.99 4.51
1409 1560 6.747414 TTATAGTGATACAGCTTGACCCAT 57.253 37.500 0.00 0.00 0.00 4.00
1410 1561 3.550437 AGTGATACAGCTTGACCCATC 57.450 47.619 0.00 0.00 0.00 3.51
1411 1562 2.840038 AGTGATACAGCTTGACCCATCA 59.160 45.455 0.00 0.00 0.00 3.07
1412 1563 3.264193 AGTGATACAGCTTGACCCATCAA 59.736 43.478 0.00 0.00 42.73 2.57
1413 1564 4.080129 AGTGATACAGCTTGACCCATCAAT 60.080 41.667 0.00 0.00 43.92 2.57
1414 1565 4.036027 GTGATACAGCTTGACCCATCAATG 59.964 45.833 0.00 0.00 43.92 2.82
1415 1566 1.843368 ACAGCTTGACCCATCAATGG 58.157 50.000 1.79 1.79 43.92 3.16
1460 1611 4.811557 GCTATCTTGGAGGAACACATGTAC 59.188 45.833 0.00 0.00 0.00 2.90
1461 1612 5.395768 GCTATCTTGGAGGAACACATGTACT 60.396 44.000 0.00 0.00 0.00 2.73
1462 1613 4.271696 TCTTGGAGGAACACATGTACTG 57.728 45.455 0.00 0.00 0.00 2.74
1463 1614 3.646162 TCTTGGAGGAACACATGTACTGT 59.354 43.478 0.00 0.00 39.20 3.55
1464 1615 4.836175 TCTTGGAGGAACACATGTACTGTA 59.164 41.667 0.00 0.00 35.91 2.74
1490 1641 2.948979 CCATCTTTTATGCCAACCGCTA 59.051 45.455 0.00 0.00 38.78 4.26
1494 1645 5.744666 TCTTTTATGCCAACCGCTATAAC 57.255 39.130 0.00 0.00 38.78 1.89
1495 1646 5.433526 TCTTTTATGCCAACCGCTATAACT 58.566 37.500 0.00 0.00 38.78 2.24
1496 1647 5.295787 TCTTTTATGCCAACCGCTATAACTG 59.704 40.000 0.00 0.00 38.78 3.16
1541 1693 7.703621 CAGTTTATTGATTGCCTTTATCCAGTG 59.296 37.037 0.00 0.00 0.00 3.66
1608 1760 8.321353 CCACATAGGGAGATATGTTTATTGCTA 58.679 37.037 0.00 0.00 42.40 3.49
1686 1838 2.577606 TGGGTGGTAGTGGTTCAATG 57.422 50.000 0.00 0.00 0.00 2.82
1775 1927 2.071540 CGATGAAAGAGAGCAGTGCAA 58.928 47.619 19.20 0.00 0.00 4.08
1789 2037 0.594796 GTGCAACAACGAGGGCTTTG 60.595 55.000 0.00 0.00 36.32 2.77
1949 2200 4.900815 GCATAGGTGCCCCCTTAC 57.099 61.111 0.00 0.00 42.73 2.34
1950 2201 1.919771 GCATAGGTGCCCCCTTACA 59.080 57.895 0.00 0.00 42.73 2.41
1951 2202 0.257616 GCATAGGTGCCCCCTTACAA 59.742 55.000 0.00 0.00 42.73 2.41
1952 2203 1.341581 GCATAGGTGCCCCCTTACAAA 60.342 52.381 0.00 0.00 42.73 2.83
1953 2204 2.654863 CATAGGTGCCCCCTTACAAAG 58.345 52.381 0.00 0.00 42.73 2.77
1954 2205 1.750022 TAGGTGCCCCCTTACAAAGT 58.250 50.000 0.00 0.00 42.73 2.66
2010 2272 3.189287 GCCTCCTCACATGTACTGTTTTG 59.811 47.826 0.00 0.00 35.29 2.44
2011 2273 4.389374 CCTCCTCACATGTACTGTTTTGT 58.611 43.478 0.00 0.00 35.29 2.83
2012 2274 5.547465 CCTCCTCACATGTACTGTTTTGTA 58.453 41.667 0.00 0.00 35.29 2.41
2013 2275 5.408604 CCTCCTCACATGTACTGTTTTGTAC 59.591 44.000 0.00 0.00 42.10 2.90
2014 2276 6.169557 TCCTCACATGTACTGTTTTGTACT 57.830 37.500 0.00 0.00 42.22 2.73
2015 2277 7.292713 TCCTCACATGTACTGTTTTGTACTA 57.707 36.000 0.00 0.00 42.22 1.82
2016 2278 7.149973 TCCTCACATGTACTGTTTTGTACTAC 58.850 38.462 0.00 0.00 42.22 2.73
2017 2279 6.367969 CCTCACATGTACTGTTTTGTACTACC 59.632 42.308 0.00 0.00 42.22 3.18
2018 2280 7.058023 TCACATGTACTGTTTTGTACTACCT 57.942 36.000 0.00 0.00 42.22 3.08
2019 2281 7.149973 TCACATGTACTGTTTTGTACTACCTC 58.850 38.462 0.00 0.00 42.22 3.85
2020 2282 7.014905 TCACATGTACTGTTTTGTACTACCTCT 59.985 37.037 0.00 0.00 42.22 3.69
2021 2283 7.116376 CACATGTACTGTTTTGTACTACCTCTG 59.884 40.741 0.00 0.00 42.22 3.35
2022 2284 6.720112 TGTACTGTTTTGTACTACCTCTGT 57.280 37.500 6.41 0.00 42.22 3.41
2023 2285 6.742109 TGTACTGTTTTGTACTACCTCTGTC 58.258 40.000 6.41 0.00 42.22 3.51
2024 2286 6.548622 TGTACTGTTTTGTACTACCTCTGTCT 59.451 38.462 6.41 0.00 42.22 3.41
2025 2287 6.086785 ACTGTTTTGTACTACCTCTGTCTC 57.913 41.667 0.00 0.00 0.00 3.36
2026 2288 5.597182 ACTGTTTTGTACTACCTCTGTCTCA 59.403 40.000 0.00 0.00 0.00 3.27
2027 2289 6.097839 ACTGTTTTGTACTACCTCTGTCTCAA 59.902 38.462 0.00 0.00 0.00 3.02
2028 2290 6.880484 TGTTTTGTACTACCTCTGTCTCAAA 58.120 36.000 0.00 0.00 0.00 2.69
2029 2291 7.332557 TGTTTTGTACTACCTCTGTCTCAAAA 58.667 34.615 0.00 0.00 33.60 2.44
2030 2292 7.990886 TGTTTTGTACTACCTCTGTCTCAAAAT 59.009 33.333 0.00 0.00 35.80 1.82
2031 2293 7.962964 TTTGTACTACCTCTGTCTCAAAATG 57.037 36.000 0.00 0.00 0.00 2.32
2032 2294 6.665992 TGTACTACCTCTGTCTCAAAATGT 57.334 37.500 0.00 0.00 0.00 2.71
2033 2295 7.770366 TGTACTACCTCTGTCTCAAAATGTA 57.230 36.000 0.00 0.00 0.00 2.29
2034 2296 8.185506 TGTACTACCTCTGTCTCAAAATGTAA 57.814 34.615 0.00 0.00 0.00 2.41
2035 2297 8.304596 TGTACTACCTCTGTCTCAAAATGTAAG 58.695 37.037 0.00 0.00 0.00 2.34
2036 2298 7.540474 ACTACCTCTGTCTCAAAATGTAAGA 57.460 36.000 0.00 0.00 0.00 2.10
2037 2299 7.379750 ACTACCTCTGTCTCAAAATGTAAGAC 58.620 38.462 0.00 0.00 39.87 3.01
2038 2300 6.174720 ACCTCTGTCTCAAAATGTAAGACA 57.825 37.500 4.55 4.55 45.26 3.41
2039 2301 6.773638 ACCTCTGTCTCAAAATGTAAGACAT 58.226 36.000 5.03 0.00 45.99 3.06
2123 2385 4.016444 TCCATGGAACTATCAAACTTGGC 58.984 43.478 13.46 0.00 0.00 4.52
2132 2394 7.719633 GGAACTATCAAACTTGGCCATATCTTA 59.280 37.037 6.09 0.00 0.00 2.10
2140 2402 9.071276 CAAACTTGGCCATATCTTAATACTCAT 57.929 33.333 6.09 0.00 0.00 2.90
2157 2419 8.853077 AATACTCATGAAGATGTTTTGAGACA 57.147 30.769 17.80 9.21 37.75 3.41
2190 2452 7.705325 GCATTTTGATCATCATAGAAAGTTGCT 59.295 33.333 0.00 0.00 0.00 3.91
2191 2453 9.582431 CATTTTGATCATCATAGAAAGTTGCTT 57.418 29.630 0.00 0.00 0.00 3.91
2217 2479 3.366396 TGTCCCCTTGCAACAAAAACTA 58.634 40.909 0.00 0.00 0.00 2.24
2252 2515 7.823745 ACTACATGGTTCAAGAAGTCATTTT 57.176 32.000 0.00 0.00 0.00 1.82
2267 2530 1.415659 CATTTTGGAACACAAGGCCCA 59.584 47.619 0.00 0.00 40.82 5.36
2284 2629 2.570302 GCCCAACAGGGAACTACTTCTA 59.430 50.000 4.37 0.00 46.20 2.10
2287 2632 5.104652 GCCCAACAGGGAACTACTTCTATTA 60.105 44.000 4.37 0.00 46.20 0.98
2390 2735 7.201803 GCTTTCATTTCAAGGAGATAGAATGCT 60.202 37.037 0.00 0.00 34.26 3.79
2391 2736 9.334947 CTTTCATTTCAAGGAGATAGAATGCTA 57.665 33.333 0.00 0.00 0.00 3.49
2392 2737 9.685276 TTTCATTTCAAGGAGATAGAATGCTAA 57.315 29.630 0.00 0.00 0.00 3.09
2393 2738 8.899427 TCATTTCAAGGAGATAGAATGCTAAG 57.101 34.615 0.00 0.00 0.00 2.18
2394 2739 8.708378 TCATTTCAAGGAGATAGAATGCTAAGA 58.292 33.333 0.00 0.00 0.00 2.10
2395 2740 9.334947 CATTTCAAGGAGATAGAATGCTAAGAA 57.665 33.333 0.00 0.00 0.00 2.52
2396 2741 9.911788 ATTTCAAGGAGATAGAATGCTAAGAAA 57.088 29.630 0.00 0.00 31.71 2.52
2397 2742 8.954950 TTCAAGGAGATAGAATGCTAAGAAAG 57.045 34.615 0.00 0.00 0.00 2.62
2428 2773 9.890629 AAGTGAGATAATGCTTGTATCAAAGTA 57.109 29.630 5.17 0.00 31.49 2.24
2521 2925 7.178274 TGGTGAAAATCAAGGCATACTTTATGT 59.822 33.333 0.00 0.00 37.29 2.29
2533 2937 6.349777 GGCATACTTTATGTTGTGCCTGTTAA 60.350 38.462 15.10 0.00 46.54 2.01
2534 2938 7.257722 GCATACTTTATGTTGTGCCTGTTAAT 58.742 34.615 0.00 0.00 38.43 1.40
2577 3013 6.149807 GTGGAAAATACGGTTGAATTGGTCTA 59.850 38.462 0.00 0.00 0.00 2.59
2751 3193 2.581216 AGTGTCTCCTCGTCTAACCA 57.419 50.000 0.00 0.00 0.00 3.67
2955 3398 7.279313 TGGTACCTGATTATTCTTTTTAGTCGC 59.721 37.037 14.36 0.00 0.00 5.19
2980 3423 5.627780 GGAACATTACATTCACAACGGAAAC 59.372 40.000 0.00 0.00 0.00 2.78
3025 3468 6.599638 ACTTTGTTAAGAGAAAAGAGCACACT 59.400 34.615 1.67 0.00 35.39 3.55
3126 3578 5.047021 TGTGAAGTAGAAGTCCCTTCTCATG 60.047 44.000 9.63 0.00 46.42 3.07
3133 3585 4.468153 AGAAGTCCCTTCTCATGAAGTACC 59.532 45.833 0.00 0.00 46.42 3.34
3147 3599 5.356882 TGAAGTACCGCATTTCTGAAAAG 57.643 39.130 6.95 3.90 0.00 2.27
3161 3613 7.490657 TTTCTGAAAAGTAGCCCATAGACTA 57.509 36.000 0.00 0.00 0.00 2.59
3243 3695 7.785033 TCACAACTGATGAGATAGATAAAGCA 58.215 34.615 0.00 0.00 0.00 3.91
3318 3770 2.105821 TGGATTCCCGAAGAGTGTTTGT 59.894 45.455 0.00 0.00 34.29 2.83
3379 3831 1.272490 CTCGTCCACTTGAGGTAAGCA 59.728 52.381 0.00 0.00 40.16 3.91
3506 3958 9.547753 GTCTATCTCAATGTAAGCCAAAGATAA 57.452 33.333 0.00 0.00 29.81 1.75
3601 4053 6.942532 AGAAACTGAAGTGCTTATTTGTGA 57.057 33.333 0.00 0.00 0.00 3.58
3720 4172 5.954150 AGAGAATGCAAAATCTATGTTGGGT 59.046 36.000 0.00 0.00 0.00 4.51
3842 4297 8.909423 ATCTAAATTGACCCATTCCCTTTTTA 57.091 30.769 0.00 0.00 0.00 1.52
3868 4323 5.416952 GGTCTATGCATATTTGATTCCAGGG 59.583 44.000 6.92 0.00 0.00 4.45
3869 4324 6.006449 GTCTATGCATATTTGATTCCAGGGT 58.994 40.000 6.92 0.00 0.00 4.34
3870 4325 6.491403 GTCTATGCATATTTGATTCCAGGGTT 59.509 38.462 6.92 0.00 0.00 4.11
3871 4326 7.665559 GTCTATGCATATTTGATTCCAGGGTTA 59.334 37.037 6.92 0.00 0.00 2.85
3872 4327 6.655078 ATGCATATTTGATTCCAGGGTTAC 57.345 37.500 0.00 0.00 0.00 2.50
3873 4328 4.892934 TGCATATTTGATTCCAGGGTTACC 59.107 41.667 0.00 0.00 0.00 2.85
3874 4329 4.892934 GCATATTTGATTCCAGGGTTACCA 59.107 41.667 2.98 0.00 40.13 3.25
3875 4330 5.539955 GCATATTTGATTCCAGGGTTACCAT 59.460 40.000 2.98 0.00 40.13 3.55
3876 4331 6.041979 GCATATTTGATTCCAGGGTTACCATT 59.958 38.462 2.98 0.00 40.13 3.16
3877 4332 5.937975 ATTTGATTCCAGGGTTACCATTG 57.062 39.130 2.98 0.70 40.13 2.82
3878 4333 3.380471 TGATTCCAGGGTTACCATTGG 57.620 47.619 15.36 15.36 40.13 3.16
3879 4334 2.652348 TGATTCCAGGGTTACCATTGGT 59.348 45.455 19.13 13.94 40.13 3.67
3880 4335 3.853181 TGATTCCAGGGTTACCATTGGTA 59.147 43.478 19.13 11.62 40.13 3.25
3881 4336 4.480537 TGATTCCAGGGTTACCATTGGTAT 59.519 41.667 16.17 16.17 38.05 2.73
3882 4337 4.513406 TTCCAGGGTTACCATTGGTATC 57.487 45.455 16.17 14.64 38.05 2.24
3883 4338 3.743132 TCCAGGGTTACCATTGGTATCT 58.257 45.455 16.17 11.13 38.05 1.98
3884 4339 4.898268 TCCAGGGTTACCATTGGTATCTA 58.102 43.478 16.17 0.00 38.05 1.98
3885 4340 5.290335 TCCAGGGTTACCATTGGTATCTAA 58.710 41.667 16.17 0.44 38.05 2.10
3886 4341 5.732170 TCCAGGGTTACCATTGGTATCTAAA 59.268 40.000 16.17 0.05 38.05 1.85
3887 4342 6.391649 TCCAGGGTTACCATTGGTATCTAAAT 59.608 38.462 16.17 0.00 38.05 1.40
3888 4343 7.066781 CCAGGGTTACCATTGGTATCTAAATT 58.933 38.462 16.17 0.00 38.05 1.82
3889 4344 7.014230 CCAGGGTTACCATTGGTATCTAAATTG 59.986 40.741 16.17 8.64 38.05 2.32
3890 4345 7.777910 CAGGGTTACCATTGGTATCTAAATTGA 59.222 37.037 16.17 0.00 38.05 2.57
3891 4346 7.778382 AGGGTTACCATTGGTATCTAAATTGAC 59.222 37.037 16.17 7.96 38.05 3.18
3892 4347 7.013942 GGGTTACCATTGGTATCTAAATTGACC 59.986 40.741 16.17 15.45 38.05 4.02
3893 4348 7.013942 GGTTACCATTGGTATCTAAATTGACCC 59.986 40.741 16.17 0.00 38.05 4.46
3894 4349 6.086011 ACCATTGGTATCTAAATTGACCCA 57.914 37.500 6.54 0.00 32.11 4.51
3895 4350 6.682537 ACCATTGGTATCTAAATTGACCCAT 58.317 36.000 6.54 0.00 32.11 4.00
3896 4351 7.132128 ACCATTGGTATCTAAATTGACCCATT 58.868 34.615 6.54 0.00 32.11 3.16
3897 4352 7.287696 ACCATTGGTATCTAAATTGACCCATTC 59.712 37.037 6.54 0.00 32.11 2.67
3898 4353 7.255942 CCATTGGTATCTAAATTGACCCATTCC 60.256 40.741 0.00 0.00 0.00 3.01
3899 4354 5.701224 TGGTATCTAAATTGACCCATTCCC 58.299 41.667 0.00 0.00 0.00 3.97
3900 4355 5.435041 TGGTATCTAAATTGACCCATTCCCT 59.565 40.000 0.00 0.00 0.00 4.20
3901 4356 6.068498 TGGTATCTAAATTGACCCATTCCCTT 60.068 38.462 0.00 0.00 0.00 3.95
3902 4357 6.839134 GGTATCTAAATTGACCCATTCCCTTT 59.161 38.462 0.00 0.00 0.00 3.11
3903 4358 7.344612 GGTATCTAAATTGACCCATTCCCTTTT 59.655 37.037 0.00 0.00 0.00 2.27
3904 4359 7.813087 ATCTAAATTGACCCATTCCCTTTTT 57.187 32.000 0.00 0.00 0.00 1.94
3905 4360 8.909423 ATCTAAATTGACCCATTCCCTTTTTA 57.091 30.769 0.00 0.00 0.00 1.52
3906 4361 8.909423 TCTAAATTGACCCATTCCCTTTTTAT 57.091 30.769 0.00 0.00 0.00 1.40
3907 4362 8.757877 TCTAAATTGACCCATTCCCTTTTTATG 58.242 33.333 0.00 0.00 0.00 1.90
3908 4363 5.955961 ATTGACCCATTCCCTTTTTATGG 57.044 39.130 0.00 0.00 38.82 2.74
3909 4364 4.412060 TGACCCATTCCCTTTTTATGGT 57.588 40.909 0.00 0.00 37.67 3.55
3910 4365 4.349365 TGACCCATTCCCTTTTTATGGTC 58.651 43.478 0.00 0.00 37.67 4.02
3911 4366 4.045334 TGACCCATTCCCTTTTTATGGTCT 59.955 41.667 0.00 0.00 37.67 3.85
3912 4367 5.254267 TGACCCATTCCCTTTTTATGGTCTA 59.746 40.000 0.00 0.00 37.67 2.59
3913 4368 6.068498 TGACCCATTCCCTTTTTATGGTCTAT 60.068 38.462 0.00 0.00 37.67 1.98
3914 4369 6.136155 ACCCATTCCCTTTTTATGGTCTATG 58.864 40.000 0.00 0.00 37.67 2.23
3915 4370 5.011023 CCCATTCCCTTTTTATGGTCTATGC 59.989 44.000 0.00 0.00 37.67 3.14
3916 4371 5.598005 CCATTCCCTTTTTATGGTCTATGCA 59.402 40.000 0.00 0.00 35.23 3.96
3917 4372 6.268387 CCATTCCCTTTTTATGGTCTATGCAT 59.732 38.462 3.79 3.79 35.23 3.96
3918 4373 7.451255 CCATTCCCTTTTTATGGTCTATGCATA 59.549 37.037 6.20 6.20 35.23 3.14
3919 4374 9.028284 CATTCCCTTTTTATGGTCTATGCATAT 57.972 33.333 6.92 0.00 0.00 1.78
3920 4375 9.605951 ATTCCCTTTTTATGGTCTATGCATATT 57.394 29.630 6.92 0.00 0.00 1.28
3921 4376 9.432982 TTCCCTTTTTATGGTCTATGCATATTT 57.567 29.630 6.92 0.00 0.00 1.40
3922 4377 8.859090 TCCCTTTTTATGGTCTATGCATATTTG 58.141 33.333 6.92 0.00 0.00 2.32
3923 4378 8.859090 CCCTTTTTATGGTCTATGCATATTTGA 58.141 33.333 6.92 0.00 0.00 2.69
3928 4383 9.585369 TTTATGGTCTATGCATATTTGATTCCA 57.415 29.630 6.92 6.57 0.00 3.53
3929 4384 7.698506 ATGGTCTATGCATATTTGATTCCAG 57.301 36.000 6.92 0.00 0.00 3.86
3930 4385 6.005823 TGGTCTATGCATATTTGATTCCAGG 58.994 40.000 6.92 0.00 0.00 4.45
4126 4584 3.834489 ATGCCTGTACTCTCTTCCATG 57.166 47.619 0.00 0.00 0.00 3.66
4135 4594 7.878127 CCTGTACTCTCTTCCATGTTTTTCTTA 59.122 37.037 0.00 0.00 0.00 2.10
4168 4627 5.424757 TGTTGTACTTCCACAGGTATATGC 58.575 41.667 0.00 0.00 0.00 3.14
4259 4720 8.363390 TCTGGACATAATTTGTTTGCATGTTAA 58.637 29.630 0.00 0.00 39.18 2.01
4308 4769 5.902613 TTTTCAGTCAGATGGCAATAAGG 57.097 39.130 0.00 0.00 0.00 2.69
4317 4778 6.488006 GTCAGATGGCAATAAGGTCACATAAT 59.512 38.462 0.00 0.00 0.00 1.28
4399 4864 3.215975 TCTTTTTCCCAACCAGGTAACG 58.784 45.455 0.00 0.00 46.39 3.18
4701 5168 6.878389 AGAATGGTTGCTTGTTTTTGAAAAGA 59.122 30.769 0.00 0.00 0.00 2.52
4841 5310 1.338011 TGGGCCTAAACGTACTTTCCG 60.338 52.381 4.53 0.00 0.00 4.30
4878 5347 0.102844 TTGCACTGAACTTGGCTTGC 59.897 50.000 0.00 0.00 0.00 4.01
4907 5376 4.584638 TGGATATTTTGTGCCAGTACCT 57.415 40.909 0.00 0.00 0.00 3.08
4920 5389 3.429547 GCCAGTACCTGATACAGTGACAG 60.430 52.174 0.00 3.58 36.09 3.51
5056 5525 2.869801 TCGTCATTTCTTCAAACGCACT 59.130 40.909 0.00 0.00 33.58 4.40
5061 5530 4.213270 TCATTTCTTCAAACGCACTACCTG 59.787 41.667 0.00 0.00 0.00 4.00
5097 5566 4.246712 ACTTTGAAGGGATCATGCAGAT 57.753 40.909 0.00 0.00 38.03 2.90
5251 5720 5.363101 AGATATGGAATATATGTGCTGCCG 58.637 41.667 0.00 0.00 40.26 5.69
5364 5833 2.983136 CGCTACAGTCTATGCACATAGC 59.017 50.000 11.98 7.98 40.37 2.97
5389 5858 7.679638 GCGTGTCCTTATTTCAATAATCAGCTT 60.680 37.037 0.00 0.00 31.03 3.74
5423 5892 6.376299 AGAATCTGCATGCTTGTTAGATTGAA 59.624 34.615 26.15 0.85 38.18 2.69
5448 5917 9.851686 AAATAGATAAGATTGGCACACATTAGA 57.148 29.630 0.00 0.00 39.29 2.10
5507 5976 6.346477 TGTAGACATAGCTTCAGTCAAGTT 57.654 37.500 13.21 0.00 34.80 2.66
5570 6043 8.263640 AGAAGCATATGAACACTAACAGATTCT 58.736 33.333 6.97 0.00 0.00 2.40
5575 6048 6.611613 ATGAACACTAACAGATTCTCCTGA 57.388 37.500 0.00 0.00 37.59 3.86
5695 6169 1.819208 AGCGCAGTTTGAGCACACA 60.819 52.632 11.47 0.00 45.82 3.72
5704 6178 5.230182 CAGTTTGAGCACACACTACTGATA 58.770 41.667 2.52 0.00 35.24 2.15
5713 6187 5.651530 CACACACTACTGATAACCGAAGAT 58.348 41.667 0.00 0.00 0.00 2.40
5744 6218 4.617253 ATACTGACACAGTGTTAAGCCA 57.383 40.909 7.86 0.00 45.01 4.75
5752 6226 1.077716 GTGTTAAGCCAGGCCGGAT 60.078 57.895 16.53 8.12 36.56 4.18
5757 6231 0.468226 TAAGCCAGGCCGGATAACAG 59.532 55.000 16.53 0.00 36.56 3.16
5761 6235 0.105039 CCAGGCCGGATAACAGAGAC 59.895 60.000 5.05 0.00 36.56 3.36
5784 6258 4.517285 GTCAATGAGTGAAAGGCTGGATA 58.483 43.478 0.00 0.00 38.23 2.59
5814 6293 2.301009 AGAAGCTGCAATTTTTCTGGGG 59.699 45.455 1.02 0.00 0.00 4.96
5817 6296 1.942586 GCTGCAATTTTTCTGGGGCTG 60.943 52.381 0.00 0.00 0.00 4.85
5823 6302 0.968405 TTTTTCTGGGGCTGCACATC 59.032 50.000 3.46 0.00 0.00 3.06
5837 6316 2.483877 TGCACATCGTCCAATCAAACTC 59.516 45.455 0.00 0.00 0.00 3.01
5897 6376 4.465632 ACGTCAGTAGGTTGATGCATAA 57.534 40.909 0.00 0.00 37.56 1.90
5898 6377 5.023533 ACGTCAGTAGGTTGATGCATAAT 57.976 39.130 0.00 0.00 37.56 1.28
5899 6378 6.156748 ACGTCAGTAGGTTGATGCATAATA 57.843 37.500 0.00 0.00 37.56 0.98
5900 6379 6.216569 ACGTCAGTAGGTTGATGCATAATAG 58.783 40.000 0.00 0.00 37.56 1.73
5901 6380 6.040504 ACGTCAGTAGGTTGATGCATAATAGA 59.959 38.462 0.00 0.00 37.56 1.98
5902 6381 7.093354 CGTCAGTAGGTTGATGCATAATAGAT 58.907 38.462 0.00 0.00 0.00 1.98
5903 6382 7.600375 CGTCAGTAGGTTGATGCATAATAGATT 59.400 37.037 0.00 0.00 0.00 2.40
5904 6383 9.929180 GTCAGTAGGTTGATGCATAATAGATTA 57.071 33.333 0.00 0.00 0.00 1.75
6078 6557 1.863267 CCGCATTTGTTGGCAGAAAA 58.137 45.000 0.00 0.00 0.00 2.29
6079 6558 2.208431 CCGCATTTGTTGGCAGAAAAA 58.792 42.857 1.48 0.00 0.00 1.94
6155 6635 4.365899 TGATGCTGCTTCATCAATCAAC 57.634 40.909 13.50 0.00 46.84 3.18
6179 6690 0.392706 TTCTGCTGTCGCTCTCCAAA 59.607 50.000 0.00 0.00 36.97 3.28
6180 6691 0.392706 TCTGCTGTCGCTCTCCAAAA 59.607 50.000 0.00 0.00 36.97 2.44
6182 6693 0.179059 TGCTGTCGCTCTCCAAAACA 60.179 50.000 0.00 0.00 36.97 2.83
6183 6694 0.944386 GCTGTCGCTCTCCAAAACAA 59.056 50.000 0.00 0.00 0.00 2.83
6185 6696 2.483876 CTGTCGCTCTCCAAAACAAGA 58.516 47.619 0.00 0.00 0.00 3.02
6186 6697 2.478134 CTGTCGCTCTCCAAAACAAGAG 59.522 50.000 0.00 0.00 41.62 2.85
6187 6698 1.801178 GTCGCTCTCCAAAACAAGAGG 59.199 52.381 1.94 0.00 39.54 3.69
6188 6699 1.160137 CGCTCTCCAAAACAAGAGGG 58.840 55.000 2.63 2.63 43.38 4.30
6190 6701 1.888391 GCTCTCCAAAACAAGAGGGGG 60.888 57.143 1.94 0.00 39.54 5.40
6191 6702 1.425448 CTCTCCAAAACAAGAGGGGGT 59.575 52.381 0.00 0.00 36.24 4.95
6193 6704 3.057586 TCTCCAAAACAAGAGGGGGTTA 58.942 45.455 0.00 0.00 0.00 2.85
6194 6705 3.464080 TCTCCAAAACAAGAGGGGGTTAA 59.536 43.478 0.00 0.00 0.00 2.01
6195 6706 4.079096 TCTCCAAAACAAGAGGGGGTTAAA 60.079 41.667 0.00 0.00 0.00 1.52
6196 6707 4.621769 TCCAAAACAAGAGGGGGTTAAAA 58.378 39.130 0.00 0.00 0.00 1.52
6197 6708 5.220521 TCCAAAACAAGAGGGGGTTAAAAT 58.779 37.500 0.00 0.00 0.00 1.82
6198 6709 5.071115 TCCAAAACAAGAGGGGGTTAAAATG 59.929 40.000 0.00 0.00 0.00 2.32
6200 6711 3.184382 ACAAGAGGGGGTTAAAATGGG 57.816 47.619 0.00 0.00 0.00 4.00
6204 6715 1.927371 GAGGGGGTTAAAATGGGAGGA 59.073 52.381 0.00 0.00 0.00 3.71
6205 6716 2.518407 GAGGGGGTTAAAATGGGAGGAT 59.482 50.000 0.00 0.00 0.00 3.24
6206 6717 2.247372 AGGGGGTTAAAATGGGAGGATG 59.753 50.000 0.00 0.00 0.00 3.51
6207 6718 2.023404 GGGGGTTAAAATGGGAGGATGT 60.023 50.000 0.00 0.00 0.00 3.06
6208 6719 3.567886 GGGGGTTAAAATGGGAGGATGTT 60.568 47.826 0.00 0.00 0.00 2.71
6209 6720 4.101114 GGGGTTAAAATGGGAGGATGTTT 58.899 43.478 0.00 0.00 0.00 2.83
6210 6721 4.081142 GGGGTTAAAATGGGAGGATGTTTG 60.081 45.833 0.00 0.00 0.00 2.93
6211 6722 4.503910 GGTTAAAATGGGAGGATGTTTGC 58.496 43.478 0.00 0.00 0.00 3.68
6213 6724 5.420739 GGTTAAAATGGGAGGATGTTTGCTA 59.579 40.000 0.00 0.00 0.00 3.49
6237 6770 0.250234 CTCCATGGAGCTCGGTTTCA 59.750 55.000 28.45 0.00 35.31 2.69
6250 6783 7.545615 GGAGCTCGGTTTCAAAATATCATTTTT 59.454 33.333 7.83 0.00 0.00 1.94
6345 6961 7.333174 TCCATAACATTATACATATGTGGCGTG 59.667 37.037 18.81 13.47 0.00 5.34
6346 6962 5.356882 AACATTATACATATGTGGCGTGC 57.643 39.130 18.81 0.00 0.00 5.34
6413 7048 5.476945 TGTGTTCTGCTCTATTCTGTCTGTA 59.523 40.000 0.00 0.00 0.00 2.74
6490 7129 4.918810 ACTTGTTCTGCTAAAAGTTGGG 57.081 40.909 0.00 0.00 28.57 4.12
6531 7170 0.249398 AACCATCCACGTAGCTCCAC 59.751 55.000 0.00 0.00 0.00 4.02
6581 7222 3.958147 ATCTGCCACAACCGCTCGG 62.958 63.158 6.79 6.79 42.03 4.63
6625 7266 0.868406 GTCGGCAGTTCTTTCACTGG 59.132 55.000 3.15 0.00 43.94 4.00
6630 7271 1.269257 GCAGTTCTTTCACTGGCAACC 60.269 52.381 3.15 0.00 43.94 3.77
6726 7367 1.347050 CTCCACCCTCCATGCTATCTG 59.653 57.143 0.00 0.00 0.00 2.90
6732 7373 1.269988 CCTCCATGCTATCTGTCCACG 60.270 57.143 0.00 0.00 0.00 4.94
6733 7374 1.683385 CTCCATGCTATCTGTCCACGA 59.317 52.381 0.00 0.00 0.00 4.35
6734 7375 1.683385 TCCATGCTATCTGTCCACGAG 59.317 52.381 0.00 0.00 0.00 4.18
6735 7376 1.495878 CATGCTATCTGTCCACGAGC 58.504 55.000 0.00 0.00 0.00 5.03
6736 7377 1.068281 CATGCTATCTGTCCACGAGCT 59.932 52.381 0.00 0.00 34.19 4.09
6737 7378 1.186200 TGCTATCTGTCCACGAGCTT 58.814 50.000 0.00 0.00 34.19 3.74
6738 7379 1.550524 TGCTATCTGTCCACGAGCTTT 59.449 47.619 0.00 0.00 34.19 3.51
6739 7380 1.929836 GCTATCTGTCCACGAGCTTTG 59.070 52.381 0.00 0.00 0.00 2.77
6740 7381 1.929836 CTATCTGTCCACGAGCTTTGC 59.070 52.381 0.00 0.00 0.00 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 21 5.226396 CGGGTTGATTTCAATAAACTGCAA 58.774 37.500 0.00 0.00 38.24 4.08
85 91 5.550403 ACCTAAAATCTCAGGGGTGTTTCTA 59.450 40.000 0.00 0.00 36.15 2.10
165 176 2.572209 CGAAAGGTCAGGGGGTTTTA 57.428 50.000 0.00 0.00 0.00 1.52
536 562 2.093799 CACACATACACGCGTGCG 59.906 61.111 37.35 27.19 46.03 5.34
537 563 1.154672 CACACACATACACGCGTGC 60.155 57.895 37.35 0.00 36.57 5.34
538 564 0.111310 CACACACACATACACGCGTG 60.111 55.000 35.99 35.99 39.10 5.34
539 565 0.528901 ACACACACACATACACGCGT 60.529 50.000 5.58 5.58 0.00 6.01
547 597 4.397730 ACATACACACAAACACACACACAT 59.602 37.500 0.00 0.00 0.00 3.21
586 646 4.819105 TGAATGTCGTCAATCCTAAGGT 57.181 40.909 0.00 0.00 0.00 3.50
830 912 9.525409 GCGGAAGTTCTTACTTTATGAATAGTA 57.475 33.333 2.25 0.00 44.51 1.82
831 913 7.222224 CGCGGAAGTTCTTACTTTATGAATAGT 59.778 37.037 0.00 0.00 44.51 2.12
832 914 7.434307 TCGCGGAAGTTCTTACTTTATGAATAG 59.566 37.037 6.13 0.00 44.51 1.73
833 915 7.259882 TCGCGGAAGTTCTTACTTTATGAATA 58.740 34.615 6.13 0.00 44.51 1.75
834 916 6.103997 TCGCGGAAGTTCTTACTTTATGAAT 58.896 36.000 6.13 0.00 44.51 2.57
835 917 5.472148 TCGCGGAAGTTCTTACTTTATGAA 58.528 37.500 6.13 0.00 44.51 2.57
836 918 5.063180 TCGCGGAAGTTCTTACTTTATGA 57.937 39.130 6.13 0.00 44.51 2.15
837 919 5.291128 ACATCGCGGAAGTTCTTACTTTATG 59.709 40.000 6.13 0.00 44.51 1.90
840 922 3.660865 ACATCGCGGAAGTTCTTACTTT 58.339 40.909 6.13 0.00 44.51 2.66
852 934 2.572191 AATCTCGTAAACATCGCGGA 57.428 45.000 6.13 0.00 0.00 5.54
854 936 6.458592 GCATAATAAATCTCGTAAACATCGCG 59.541 38.462 0.00 0.00 0.00 5.87
889 971 4.092383 CGTCTCCTACATTTTGTTTACGGG 59.908 45.833 0.00 0.00 0.00 5.28
891 973 4.687483 ACCGTCTCCTACATTTTGTTTACG 59.313 41.667 0.00 0.00 0.00 3.18
903 985 2.491291 GGTCCAGACCGTCTCCTAC 58.509 63.158 0.05 0.00 42.29 3.18
936 1043 3.579685 CGAGAGCTGTGGTCGAGA 58.420 61.111 0.00 0.00 35.70 4.04
1118 1225 3.858868 TTGAGCCGAAGCGCGAAGT 62.859 57.895 12.10 0.00 46.67 3.01
1172 1280 3.443925 CGAGCCGTCCTCTGAGCA 61.444 66.667 0.00 0.00 38.49 4.26
1176 1284 3.827898 GACCCGAGCCGTCCTCTG 61.828 72.222 0.00 0.00 38.49 3.35
1315 1423 2.656560 AATCTAGTGCTGTCGTCACC 57.343 50.000 0.00 0.00 35.14 4.02
1325 1434 1.135867 GCTCGCAGCTAATCTAGTGC 58.864 55.000 0.00 0.00 38.45 4.40
1375 1499 6.961554 GCTGTATCACTATAAAGTTGTGTTGC 59.038 38.462 0.00 0.00 35.45 4.17
1376 1500 8.256611 AGCTGTATCACTATAAAGTTGTGTTG 57.743 34.615 0.00 0.00 35.45 3.33
1383 1534 6.156256 TGGGTCAAGCTGTATCACTATAAAGT 59.844 38.462 0.00 0.00 35.91 2.66
1388 1539 4.655649 TGATGGGTCAAGCTGTATCACTAT 59.344 41.667 0.00 0.00 0.00 2.12
1399 1550 2.549754 CGTATCCATTGATGGGTCAAGC 59.450 50.000 10.00 0.00 46.75 4.01
1400 1551 3.808728 ACGTATCCATTGATGGGTCAAG 58.191 45.455 10.00 1.50 46.75 3.02
1407 1558 4.154737 CAGGCCATTACGTATCCATTGATG 59.845 45.833 5.01 0.00 32.18 3.07
1408 1559 4.041567 TCAGGCCATTACGTATCCATTGAT 59.958 41.667 5.01 0.00 34.87 2.57
1409 1560 3.389656 TCAGGCCATTACGTATCCATTGA 59.610 43.478 5.01 0.00 0.00 2.57
1410 1561 3.738982 TCAGGCCATTACGTATCCATTG 58.261 45.455 5.01 0.00 0.00 2.82
1411 1562 4.640771 ATCAGGCCATTACGTATCCATT 57.359 40.909 5.01 0.00 0.00 3.16
1412 1563 4.640771 AATCAGGCCATTACGTATCCAT 57.359 40.909 5.01 0.00 0.00 3.41
1413 1564 4.431416 AAATCAGGCCATTACGTATCCA 57.569 40.909 5.01 0.00 0.00 3.41
1414 1565 4.023193 CCAAAATCAGGCCATTACGTATCC 60.023 45.833 5.01 0.00 0.00 2.59
1415 1566 4.556699 GCCAAAATCAGGCCATTACGTATC 60.557 45.833 5.01 0.00 46.50 2.24
1416 1567 3.317993 GCCAAAATCAGGCCATTACGTAT 59.682 43.478 5.01 0.00 46.50 3.06
1417 1568 2.685897 GCCAAAATCAGGCCATTACGTA 59.314 45.455 5.01 0.00 46.50 3.57
1418 1569 1.476488 GCCAAAATCAGGCCATTACGT 59.524 47.619 5.01 0.00 46.50 3.57
1419 1570 2.208326 GCCAAAATCAGGCCATTACG 57.792 50.000 5.01 0.00 46.50 3.18
1460 1611 6.713762 TGGCATAAAAGATGGGAAATACAG 57.286 37.500 0.00 0.00 0.00 2.74
1461 1612 6.127196 GGTTGGCATAAAAGATGGGAAATACA 60.127 38.462 0.00 0.00 0.00 2.29
1462 1613 6.280643 GGTTGGCATAAAAGATGGGAAATAC 58.719 40.000 0.00 0.00 0.00 1.89
1463 1614 5.068460 CGGTTGGCATAAAAGATGGGAAATA 59.932 40.000 0.00 0.00 0.00 1.40
1464 1615 4.141959 CGGTTGGCATAAAAGATGGGAAAT 60.142 41.667 0.00 0.00 0.00 2.17
1480 1631 1.583054 CTCCAGTTATAGCGGTTGGC 58.417 55.000 0.00 0.00 44.05 4.52
1541 1693 1.824230 TGTGGATTTGGGTTGCTATGC 59.176 47.619 0.00 0.00 0.00 3.14
1608 1760 0.332972 GGGAGCCCCTGAAATCAACT 59.667 55.000 3.16 0.00 41.34 3.16
1631 1783 1.050204 CCAATGCATGGTATTGGGGG 58.950 55.000 15.61 0.00 46.91 5.40
1651 1803 2.621526 CACCCAAACCTTAACGAAGCTT 59.378 45.455 0.00 0.00 0.00 3.74
1670 1822 2.621055 TGTTGCATTGAACCACTACCAC 59.379 45.455 0.00 0.00 0.00 4.16
1686 1838 7.097342 GCAACTGCATATATGTAAATGTTGC 57.903 36.000 27.36 27.36 46.40 4.17
1714 1866 4.513198 TTTCTTTTAAGTTGCCCGATGG 57.487 40.909 0.00 0.00 0.00 3.51
1995 2257 7.116376 CAGAGGTAGTACAAAACAGTACATGTG 59.884 40.741 9.11 0.00 45.25 3.21
2010 2272 8.521176 TCTTACATTTTGAGACAGAGGTAGTAC 58.479 37.037 0.00 0.00 0.00 2.73
2011 2273 8.521176 GTCTTACATTTTGAGACAGAGGTAGTA 58.479 37.037 0.00 0.00 39.59 1.82
2012 2274 7.015292 TGTCTTACATTTTGAGACAGAGGTAGT 59.985 37.037 1.60 0.00 43.38 2.73
2013 2275 7.378966 TGTCTTACATTTTGAGACAGAGGTAG 58.621 38.462 1.60 0.00 43.38 3.18
2014 2276 7.297936 TGTCTTACATTTTGAGACAGAGGTA 57.702 36.000 1.60 0.00 43.38 3.08
2015 2277 6.174720 TGTCTTACATTTTGAGACAGAGGT 57.825 37.500 1.60 0.00 43.38 3.85
2016 2278 7.678947 AATGTCTTACATTTTGAGACAGAGG 57.321 36.000 10.64 0.00 45.80 3.69
2040 2302 7.038870 TCACACATACTACCTAGCCTACAAAAA 60.039 37.037 0.00 0.00 0.00 1.94
2041 2303 6.438108 TCACACATACTACCTAGCCTACAAAA 59.562 38.462 0.00 0.00 0.00 2.44
2042 2304 5.953548 TCACACATACTACCTAGCCTACAAA 59.046 40.000 0.00 0.00 0.00 2.83
2043 2305 5.512298 TCACACATACTACCTAGCCTACAA 58.488 41.667 0.00 0.00 0.00 2.41
2044 2306 5.120054 TCACACATACTACCTAGCCTACA 57.880 43.478 0.00 0.00 0.00 2.74
2045 2307 5.131784 ACTCACACATACTACCTAGCCTAC 58.868 45.833 0.00 0.00 0.00 3.18
2046 2308 5.384145 ACTCACACATACTACCTAGCCTA 57.616 43.478 0.00 0.00 0.00 3.93
2047 2309 4.252570 ACTCACACATACTACCTAGCCT 57.747 45.455 0.00 0.00 0.00 4.58
2048 2310 4.277921 GGTACTCACACATACTACCTAGCC 59.722 50.000 0.00 0.00 0.00 3.93
2049 2311 4.024218 CGGTACTCACACATACTACCTAGC 60.024 50.000 0.00 0.00 0.00 3.42
2050 2312 5.363101 TCGGTACTCACACATACTACCTAG 58.637 45.833 0.00 0.00 0.00 3.02
2051 2313 5.357742 TCGGTACTCACACATACTACCTA 57.642 43.478 0.00 0.00 0.00 3.08
2052 2314 4.226427 TCGGTACTCACACATACTACCT 57.774 45.455 0.00 0.00 0.00 3.08
2053 2315 4.577693 TGATCGGTACTCACACATACTACC 59.422 45.833 0.00 0.00 0.00 3.18
2054 2316 5.277876 CCTGATCGGTACTCACACATACTAC 60.278 48.000 0.00 0.00 0.00 2.73
2055 2317 4.820173 CCTGATCGGTACTCACACATACTA 59.180 45.833 0.00 0.00 0.00 1.82
2056 2318 3.632604 CCTGATCGGTACTCACACATACT 59.367 47.826 0.00 0.00 0.00 2.12
2118 2380 8.853077 TTCATGAGTATTAAGATATGGCCAAG 57.147 34.615 10.96 0.00 0.00 3.61
2132 2394 8.725148 GTGTCTCAAAACATCTTCATGAGTATT 58.275 33.333 0.00 0.00 38.83 1.89
2156 2418 8.296713 TCTATGATGATCAAAATGCATGATGTG 58.703 33.333 6.02 0.00 37.64 3.21
2157 2419 8.404107 TCTATGATGATCAAAATGCATGATGT 57.596 30.769 6.02 0.00 37.64 3.06
2190 2452 6.672266 TTTTGTTGCAAGGGGACATTATAA 57.328 33.333 0.00 0.00 0.00 0.98
2191 2453 6.268847 AGTTTTTGTTGCAAGGGGACATTATA 59.731 34.615 0.00 0.00 0.00 0.98
2217 2479 3.191888 ACCATGTAGTTCACCCTCTCT 57.808 47.619 0.00 0.00 0.00 3.10
2241 2503 4.202151 GCCTTGTGTTCCAAAATGACTTCT 60.202 41.667 0.00 0.00 31.20 2.85
2252 2515 0.754957 CTGTTGGGCCTTGTGTTCCA 60.755 55.000 4.53 0.00 0.00 3.53
2267 2530 8.822805 TGTTGATAATAGAAGTAGTTCCCTGTT 58.177 33.333 6.68 0.00 32.48 3.16
2348 2693 2.514205 AAGCACCACAGCAATGTTTC 57.486 45.000 0.00 0.00 36.85 2.78
2356 2701 2.798976 TGAAATGAAAGCACCACAGC 57.201 45.000 0.00 0.00 0.00 4.40
2391 2736 9.732130 AAGCATTATCTCACTTCTTACTTTCTT 57.268 29.630 0.00 0.00 0.00 2.52
2392 2737 9.160496 CAAGCATTATCTCACTTCTTACTTTCT 57.840 33.333 0.00 0.00 0.00 2.52
2393 2738 8.940952 ACAAGCATTATCTCACTTCTTACTTTC 58.059 33.333 0.00 0.00 0.00 2.62
2394 2739 8.854614 ACAAGCATTATCTCACTTCTTACTTT 57.145 30.769 0.00 0.00 0.00 2.66
2396 2741 9.757227 GATACAAGCATTATCTCACTTCTTACT 57.243 33.333 0.00 0.00 0.00 2.24
2397 2742 9.534565 TGATACAAGCATTATCTCACTTCTTAC 57.465 33.333 0.00 0.00 0.00 2.34
2428 2773 7.826690 ACGGTGCTTCAAATATTGTTTATCTT 58.173 30.769 0.00 0.00 0.00 2.40
2472 2817 7.127955 ACCATAAGATCAGTAAACTCAGGGAAT 59.872 37.037 0.00 0.00 0.00 3.01
2557 2961 5.067283 GGCATAGACCAATTCAACCGTATTT 59.933 40.000 0.00 0.00 0.00 1.40
2577 3013 6.112927 ACAATGGACACAATTTAAAGGCAT 57.887 33.333 0.00 0.00 0.00 4.40
2751 3193 2.289694 GCCGCTGTATATGACTGGGAAT 60.290 50.000 5.51 0.00 40.95 3.01
2929 3371 7.279313 GCGACTAAAAAGAATAATCAGGTACCA 59.721 37.037 15.94 0.00 0.00 3.25
2953 3396 3.160545 GTTGTGAATGTAATGTTCCGCG 58.839 45.455 0.00 0.00 0.00 6.46
2955 3398 3.433957 TCCGTTGTGAATGTAATGTTCCG 59.566 43.478 0.00 0.00 0.00 4.30
2980 3423 7.069085 ACAAAGTATTGGATGAATGGAATGAGG 59.931 37.037 0.00 0.00 41.01 3.86
3025 3468 1.918262 ACCAGAGGATCCATTTGCTCA 59.082 47.619 15.82 0.00 36.61 4.26
3066 3518 7.672983 AGGTGTCTAAAATGTGTATCAGTTG 57.327 36.000 0.00 0.00 34.50 3.16
3067 3519 8.691661 AAAGGTGTCTAAAATGTGTATCAGTT 57.308 30.769 0.00 0.00 35.81 3.16
3068 3520 8.691661 AAAAGGTGTCTAAAATGTGTATCAGT 57.308 30.769 0.00 0.00 0.00 3.41
3074 3526 9.623000 ACTACTTAAAAGGTGTCTAAAATGTGT 57.377 29.630 0.00 0.00 0.00 3.72
3126 3578 5.358298 ACTTTTCAGAAATGCGGTACTTC 57.642 39.130 8.38 0.00 0.00 3.01
3133 3585 2.487762 TGGGCTACTTTTCAGAAATGCG 59.512 45.455 8.38 2.64 0.00 4.73
3161 3613 1.355043 ACTCGAGTCTTAGACCACCCT 59.645 52.381 13.58 0.00 32.18 4.34
3243 3695 7.173218 CCGTTATCTATTATCATTTGGTGCACT 59.827 37.037 17.98 0.00 0.00 4.40
3318 3770 6.175471 ACAGATGCATTCATTCACTGAAGTA 58.825 36.000 14.26 0.00 46.71 2.24
3506 3958 5.891198 AGTCAGCTCAGGAGATGTATAGAT 58.109 41.667 13.59 0.00 44.55 1.98
3523 3975 3.927142 ACAGCGACTTAACAATAGTCAGC 59.073 43.478 0.00 0.00 41.64 4.26
3713 4165 1.955778 CAACTGAATCTGCACCCAACA 59.044 47.619 0.00 0.00 0.00 3.33
3796 4250 6.696411 AGATACCAACTATAGCTTCAGCATC 58.304 40.000 0.00 0.00 45.16 3.91
3842 4297 6.662234 CCTGGAATCAAATATGCATAGACCAT 59.338 38.462 12.79 0.00 0.00 3.55
3868 4323 7.558444 TGGGTCAATTTAGATACCAATGGTAAC 59.442 37.037 16.90 13.86 41.85 2.50
3869 4324 7.644062 TGGGTCAATTTAGATACCAATGGTAA 58.356 34.615 16.90 1.21 41.85 2.85
3870 4325 7.214460 TGGGTCAATTTAGATACCAATGGTA 57.786 36.000 15.24 15.24 42.80 3.25
3871 4326 6.086011 TGGGTCAATTTAGATACCAATGGT 57.914 37.500 10.81 10.81 40.16 3.55
3872 4327 7.255942 GGAATGGGTCAATTTAGATACCAATGG 60.256 40.741 0.00 0.00 33.23 3.16
3873 4328 7.255942 GGGAATGGGTCAATTTAGATACCAATG 60.256 40.741 0.00 0.00 33.23 2.82
3874 4329 6.782494 GGGAATGGGTCAATTTAGATACCAAT 59.218 38.462 0.00 0.00 33.23 3.16
3875 4330 6.068498 AGGGAATGGGTCAATTTAGATACCAA 60.068 38.462 0.00 0.00 33.23 3.67
3876 4331 5.435041 AGGGAATGGGTCAATTTAGATACCA 59.565 40.000 0.00 0.00 33.46 3.25
3877 4332 5.953571 AGGGAATGGGTCAATTTAGATACC 58.046 41.667 0.00 0.00 0.00 2.73
3878 4333 7.898014 AAAGGGAATGGGTCAATTTAGATAC 57.102 36.000 0.00 0.00 0.00 2.24
3879 4334 8.909423 AAAAAGGGAATGGGTCAATTTAGATA 57.091 30.769 0.00 0.00 0.00 1.98
3880 4335 7.813087 AAAAAGGGAATGGGTCAATTTAGAT 57.187 32.000 0.00 0.00 0.00 1.98
3881 4336 8.757877 CATAAAAAGGGAATGGGTCAATTTAGA 58.242 33.333 0.00 0.00 0.00 2.10
3882 4337 7.986889 CCATAAAAAGGGAATGGGTCAATTTAG 59.013 37.037 0.00 0.00 37.17 1.85
3883 4338 7.459444 ACCATAAAAAGGGAATGGGTCAATTTA 59.541 33.333 5.63 0.00 43.73 1.40
3884 4339 6.274436 ACCATAAAAAGGGAATGGGTCAATTT 59.726 34.615 5.63 0.00 43.73 1.82
3885 4340 5.790096 ACCATAAAAAGGGAATGGGTCAATT 59.210 36.000 5.63 0.00 43.73 2.32
3886 4341 5.349690 ACCATAAAAAGGGAATGGGTCAAT 58.650 37.500 5.63 0.00 43.73 2.57
3887 4342 4.757692 ACCATAAAAAGGGAATGGGTCAA 58.242 39.130 5.63 0.00 43.73 3.18
3888 4343 4.045334 AGACCATAAAAAGGGAATGGGTCA 59.955 41.667 9.82 0.00 43.73 4.02
3889 4344 4.610333 AGACCATAAAAAGGGAATGGGTC 58.390 43.478 0.00 0.00 43.73 4.46
3890 4345 4.692523 AGACCATAAAAAGGGAATGGGT 57.307 40.909 5.63 0.00 43.73 4.51
3891 4346 5.011023 GCATAGACCATAAAAAGGGAATGGG 59.989 44.000 5.63 0.00 43.73 4.00
3892 4347 5.598005 TGCATAGACCATAAAAAGGGAATGG 59.402 40.000 0.00 0.00 44.76 3.16
3893 4348 6.713762 TGCATAGACCATAAAAAGGGAATG 57.286 37.500 0.00 0.00 0.00 2.67
3894 4349 9.605951 AATATGCATAGACCATAAAAAGGGAAT 57.394 29.630 12.79 0.00 0.00 3.01
3895 4350 9.432982 AAATATGCATAGACCATAAAAAGGGAA 57.567 29.630 12.79 0.00 0.00 3.97
3896 4351 8.859090 CAAATATGCATAGACCATAAAAAGGGA 58.141 33.333 12.79 0.00 0.00 4.20
3897 4352 8.859090 TCAAATATGCATAGACCATAAAAAGGG 58.141 33.333 12.79 0.00 0.00 3.95
3902 4357 9.585369 TGGAATCAAATATGCATAGACCATAAA 57.415 29.630 12.79 0.00 0.00 1.40
3903 4358 9.234827 CTGGAATCAAATATGCATAGACCATAA 57.765 33.333 12.79 0.00 0.00 1.90
3904 4359 7.830697 CCTGGAATCAAATATGCATAGACCATA 59.169 37.037 12.79 0.00 0.00 2.74
3905 4360 6.662234 CCTGGAATCAAATATGCATAGACCAT 59.338 38.462 12.79 0.00 0.00 3.55
3906 4361 6.005823 CCTGGAATCAAATATGCATAGACCA 58.994 40.000 12.79 11.29 0.00 4.02
3907 4362 5.416952 CCCTGGAATCAAATATGCATAGACC 59.583 44.000 12.79 7.78 0.00 3.85
3908 4363 6.006449 ACCCTGGAATCAAATATGCATAGAC 58.994 40.000 12.79 0.00 0.00 2.59
3909 4364 6.204852 ACCCTGGAATCAAATATGCATAGA 57.795 37.500 12.79 4.62 0.00 1.98
3910 4365 6.906157 AACCCTGGAATCAAATATGCATAG 57.094 37.500 12.79 0.00 0.00 2.23
3911 4366 6.719370 GGTAACCCTGGAATCAAATATGCATA 59.281 38.462 9.27 9.27 0.00 3.14
3912 4367 5.539955 GGTAACCCTGGAATCAAATATGCAT 59.460 40.000 3.79 3.79 0.00 3.96
3913 4368 4.892934 GGTAACCCTGGAATCAAATATGCA 59.107 41.667 0.00 0.00 0.00 3.96
3914 4369 4.892934 TGGTAACCCTGGAATCAAATATGC 59.107 41.667 0.00 0.00 0.00 3.14
3915 4370 6.015180 CCATGGTAACCCTGGAATCAAATATG 60.015 42.308 2.57 0.00 33.33 1.78
3916 4371 6.077322 CCATGGTAACCCTGGAATCAAATAT 58.923 40.000 2.57 0.00 33.33 1.28
3917 4372 5.043732 ACCATGGTAACCCTGGAATCAAATA 60.044 40.000 18.10 0.00 34.74 1.40
3918 4373 4.264804 ACCATGGTAACCCTGGAATCAAAT 60.265 41.667 18.10 0.00 34.74 2.32
3919 4374 3.076785 ACCATGGTAACCCTGGAATCAAA 59.923 43.478 18.10 0.00 34.74 2.69
3920 4375 2.652348 ACCATGGTAACCCTGGAATCAA 59.348 45.455 18.10 0.00 34.74 2.57
3921 4376 2.025416 CACCATGGTAACCCTGGAATCA 60.025 50.000 19.28 0.00 34.74 2.57
3922 4377 2.241176 TCACCATGGTAACCCTGGAATC 59.759 50.000 19.28 0.00 34.74 2.52
3923 4378 2.283834 TCACCATGGTAACCCTGGAAT 58.716 47.619 19.28 0.00 34.74 3.01
3924 4379 1.748732 TCACCATGGTAACCCTGGAA 58.251 50.000 19.28 0.00 34.74 3.53
3925 4380 1.979809 ATCACCATGGTAACCCTGGA 58.020 50.000 19.28 9.30 34.74 3.86
3926 4381 2.507886 TGTATCACCATGGTAACCCTGG 59.492 50.000 19.28 3.08 35.99 4.45
3927 4382 3.924114 TGTATCACCATGGTAACCCTG 57.076 47.619 19.28 3.99 0.00 4.45
3928 4383 4.103153 CAGATGTATCACCATGGTAACCCT 59.897 45.833 19.28 12.32 0.00 4.34
3929 4384 4.389374 CAGATGTATCACCATGGTAACCC 58.611 47.826 19.28 6.95 0.00 4.11
3930 4385 3.815401 GCAGATGTATCACCATGGTAACC 59.185 47.826 19.28 6.57 0.00 2.85
4102 4560 4.546674 TGGAAGAGAGTACAGGCATATCA 58.453 43.478 0.00 0.00 0.00 2.15
4146 4605 4.814771 GGCATATACCTGTGGAAGTACAAC 59.185 45.833 0.00 0.00 0.00 3.32
4168 4627 5.293079 GCTTAAAGATGCAAGAGAGTACAGG 59.707 44.000 0.00 0.00 0.00 4.00
4173 4632 4.904241 ACTGCTTAAAGATGCAAGAGAGT 58.096 39.130 0.00 0.00 38.81 3.24
4210 4671 7.777910 CAGATTACATTGGTACTTATTCCCCAA 59.222 37.037 0.00 0.00 40.95 4.12
4230 4691 8.530311 ACATGCAAACAAATTATGTCCAGATTA 58.470 29.630 0.00 0.00 42.99 1.75
4399 4864 8.900983 ATATAGCCTTGTCAAGAGATTCTTTC 57.099 34.615 14.42 0.00 33.78 2.62
4628 5093 9.573166 CCAAGAAAATGGGTACTATCAATATCA 57.427 33.333 0.00 0.00 36.79 2.15
4629 5094 9.793259 TCCAAGAAAATGGGTACTATCAATATC 57.207 33.333 0.00 0.00 41.05 1.63
4630 5095 9.574516 GTCCAAGAAAATGGGTACTATCAATAT 57.425 33.333 0.00 0.00 41.05 1.28
4631 5096 8.778059 AGTCCAAGAAAATGGGTACTATCAATA 58.222 33.333 0.00 0.00 41.05 1.90
4632 5097 7.643123 AGTCCAAGAAAATGGGTACTATCAAT 58.357 34.615 0.00 0.00 41.05 2.57
4841 5310 2.664916 CAACACAAGCTAACATGGCAC 58.335 47.619 0.00 0.00 0.00 5.01
4878 5347 7.775120 ACTGGCACAAAATATCCAAATTCTAG 58.225 34.615 0.00 0.00 38.70 2.43
4920 5389 3.681593 ACTCAGTCTACCTCTGTCAGTC 58.318 50.000 0.00 0.00 34.86 3.51
5056 5525 7.773224 TCAAAGTTTGAAATCTTCAGTCAGGTA 59.227 33.333 15.92 0.00 41.38 3.08
5364 5833 7.251704 AGCTGATTATTGAAATAAGGACACG 57.748 36.000 0.00 0.00 34.62 4.49
5389 5858 4.539726 AGCATGCAGATTCTTTAATCCCA 58.460 39.130 21.98 0.00 42.20 4.37
5570 6043 3.558931 ATTGACACACAACAGTCAGGA 57.441 42.857 0.00 0.00 44.65 3.86
5575 6048 3.313526 GCTCTGAATTGACACACAACAGT 59.686 43.478 0.00 0.00 41.52 3.55
5675 6149 1.819208 TGTGCTCAAACTGCGCTGT 60.819 52.632 14.78 14.78 41.05 4.40
5695 6169 3.243434 CGCCATCTTCGGTTATCAGTAGT 60.243 47.826 0.00 0.00 0.00 2.73
5704 6178 0.250553 TTTCCACGCCATCTTCGGTT 60.251 50.000 0.00 0.00 0.00 4.44
5713 6187 1.070914 TGTGTCAGTATTTCCACGCCA 59.929 47.619 0.00 0.00 0.00 5.69
5744 6218 0.683504 ACGTCTCTGTTATCCGGCCT 60.684 55.000 0.00 0.00 0.00 5.19
5752 6226 5.447624 TTCACTCATTGACGTCTCTGTTA 57.552 39.130 17.92 0.00 32.26 2.41
5757 6231 2.413453 GCCTTTCACTCATTGACGTCTC 59.587 50.000 17.92 0.00 32.26 3.36
5761 6235 1.466167 CCAGCCTTTCACTCATTGACG 59.534 52.381 0.00 0.00 32.26 4.35
5795 6269 1.271001 GCCCCAGAAAAATTGCAGCTT 60.271 47.619 0.00 0.00 0.00 3.74
5803 6277 1.551883 GATGTGCAGCCCCAGAAAAAT 59.448 47.619 0.00 0.00 0.00 1.82
5814 6293 0.804364 TTGATTGGACGATGTGCAGC 59.196 50.000 0.00 0.00 34.96 5.25
5817 6296 2.159517 GGAGTTTGATTGGACGATGTGC 60.160 50.000 0.00 0.00 0.00 4.57
5823 6302 2.226437 CACTTGGGAGTTTGATTGGACG 59.774 50.000 0.00 0.00 32.54 4.79
5864 6343 7.228108 TCAACCTACTGACGTATCGAGATAAAT 59.772 37.037 0.00 0.00 0.00 1.40
5865 6344 6.539826 TCAACCTACTGACGTATCGAGATAAA 59.460 38.462 0.00 0.00 0.00 1.40
5866 6345 6.051074 TCAACCTACTGACGTATCGAGATAA 58.949 40.000 0.00 0.00 0.00 1.75
5912 6391 4.187694 TCCCAACAACAATGCAAAACTTC 58.812 39.130 0.00 0.00 0.00 3.01
6079 6558 9.498176 AATAAAGCAAAGCAGATCTTCATTTTT 57.502 25.926 0.00 0.00 32.88 1.94
6080 6559 8.932791 CAATAAAGCAAAGCAGATCTTCATTTT 58.067 29.630 0.00 0.00 32.88 1.82
6179 6690 3.143168 TCCCATTTTAACCCCCTCTTGTT 59.857 43.478 0.00 0.00 0.00 2.83
6180 6691 2.725227 TCCCATTTTAACCCCCTCTTGT 59.275 45.455 0.00 0.00 0.00 3.16
6182 6693 2.314852 CCTCCCATTTTAACCCCCTCTT 59.685 50.000 0.00 0.00 0.00 2.85
6183 6694 1.930204 CCTCCCATTTTAACCCCCTCT 59.070 52.381 0.00 0.00 0.00 3.69
6185 6696 2.084121 TCCTCCCATTTTAACCCCCT 57.916 50.000 0.00 0.00 0.00 4.79
6186 6697 2.023404 ACATCCTCCCATTTTAACCCCC 60.023 50.000 0.00 0.00 0.00 5.40
6187 6698 3.398318 ACATCCTCCCATTTTAACCCC 57.602 47.619 0.00 0.00 0.00 4.95
6188 6699 4.622933 GCAAACATCCTCCCATTTTAACCC 60.623 45.833 0.00 0.00 0.00 4.11
6190 6701 5.405935 AGCAAACATCCTCCCATTTTAAC 57.594 39.130 0.00 0.00 0.00 2.01
6191 6702 6.894654 TCATAGCAAACATCCTCCCATTTTAA 59.105 34.615 0.00 0.00 0.00 1.52
6193 6704 5.271598 TCATAGCAAACATCCTCCCATTTT 58.728 37.500 0.00 0.00 0.00 1.82
6194 6705 4.870636 TCATAGCAAACATCCTCCCATTT 58.129 39.130 0.00 0.00 0.00 2.32
6195 6706 4.467769 CTCATAGCAAACATCCTCCCATT 58.532 43.478 0.00 0.00 0.00 3.16
6196 6707 3.749954 GCTCATAGCAAACATCCTCCCAT 60.750 47.826 0.00 0.00 41.89 4.00
6197 6708 2.421952 GCTCATAGCAAACATCCTCCCA 60.422 50.000 0.00 0.00 41.89 4.37
6198 6709 2.158696 AGCTCATAGCAAACATCCTCCC 60.159 50.000 1.22 0.00 45.56 4.30
6200 6711 3.137533 GGAGCTCATAGCAAACATCCTC 58.862 50.000 17.19 0.00 45.56 3.71
6204 6715 3.117776 TCCATGGAGCTCATAGCAAACAT 60.118 43.478 17.19 4.01 45.56 2.71
6205 6716 2.239402 TCCATGGAGCTCATAGCAAACA 59.761 45.455 17.19 1.44 45.56 2.83
6206 6717 2.877168 CTCCATGGAGCTCATAGCAAAC 59.123 50.000 28.45 0.00 45.56 2.93
6207 6718 3.204306 CTCCATGGAGCTCATAGCAAA 57.796 47.619 28.45 0.00 45.56 3.68
6208 6719 2.924757 CTCCATGGAGCTCATAGCAA 57.075 50.000 28.45 0.00 45.56 3.91
6320 6936 7.463544 CACGCCACATATGTATAATGTTATGG 58.536 38.462 8.32 2.74 0.00 2.74
6387 7003 6.153510 ACAGACAGAATAGAGCAGAACACATA 59.846 38.462 0.00 0.00 0.00 2.29
6388 7004 5.046735 ACAGACAGAATAGAGCAGAACACAT 60.047 40.000 0.00 0.00 0.00 3.21
6390 7006 4.815269 ACAGACAGAATAGAGCAGAACAC 58.185 43.478 0.00 0.00 0.00 3.32
6391 7007 6.590234 TTACAGACAGAATAGAGCAGAACA 57.410 37.500 0.00 0.00 0.00 3.18
6392 7008 9.243637 CTAATTACAGACAGAATAGAGCAGAAC 57.756 37.037 0.00 0.00 0.00 3.01
6394 7010 8.753497 TCTAATTACAGACAGAATAGAGCAGA 57.247 34.615 0.00 0.00 0.00 4.26
6395 7011 9.979578 ATTCTAATTACAGACAGAATAGAGCAG 57.020 33.333 0.00 0.00 36.28 4.24
6467 7102 6.303839 TCCCAACTTTTAGCAGAACAAGTAT 58.696 36.000 0.00 0.00 0.00 2.12
6468 7103 5.686753 TCCCAACTTTTAGCAGAACAAGTA 58.313 37.500 0.00 0.00 0.00 2.24
6469 7104 4.532834 TCCCAACTTTTAGCAGAACAAGT 58.467 39.130 0.00 0.00 0.00 3.16
6470 7105 4.821805 TCTCCCAACTTTTAGCAGAACAAG 59.178 41.667 0.00 0.00 0.00 3.16
6471 7106 4.787551 TCTCCCAACTTTTAGCAGAACAA 58.212 39.130 0.00 0.00 0.00 2.83
6490 7129 0.307760 CATTGGGCGCCGTAATTCTC 59.692 55.000 22.54 3.93 0.00 2.87
6514 7153 1.144057 GGTGGAGCTACGTGGATGG 59.856 63.158 1.81 0.00 0.00 3.51
6516 7155 0.755698 ATCGGTGGAGCTACGTGGAT 60.756 55.000 1.81 0.00 0.00 3.41
6531 7170 1.603172 GGTGAGATTACAGCGGATCGG 60.603 57.143 0.00 0.00 0.00 4.18
6593 7234 3.179265 CCGACAACGCGTAGGCTG 61.179 66.667 14.46 10.09 33.24 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.