Multiple sequence alignment - TraesCS6B01G352000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G352000 chr6B 100.000 3139 0 0 1 3139 617183779 617186917 0.000000e+00 5797
1 TraesCS6B01G352000 chr6D 89.540 3155 152 72 1 3068 410405599 410408662 0.000000e+00 3834
2 TraesCS6B01G352000 chr6A 89.702 2350 122 55 40 2350 555736524 555738792 0.000000e+00 2889
3 TraesCS6B01G352000 chr6A 88.258 264 15 12 2376 2635 555738973 555739224 5.090000e-78 302


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G352000 chr6B 617183779 617186917 3138 False 5797.0 5797 100.00 1 3139 1 chr6B.!!$F1 3138
1 TraesCS6B01G352000 chr6D 410405599 410408662 3063 False 3834.0 3834 89.54 1 3068 1 chr6D.!!$F1 3067
2 TraesCS6B01G352000 chr6A 555736524 555739224 2700 False 1595.5 2889 88.98 40 2635 2 chr6A.!!$F1 2595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
440 458 0.108804 TCAAGACGTCGCCAGGATTC 60.109 55.0 10.46 0.0 0.0 2.52 F
781 830 0.949105 CGTTTTCTACAGGCGGTGCT 60.949 55.0 0.00 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1799 0.175760 CGATGGCGAGGAAGAAGGAA 59.824 55.0 0.0 0.0 40.82 3.36 R
2512 2790 0.037232 GCATAGCCGTCCCACTATCC 60.037 60.0 0.0 0.0 0.00 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.334691 CGTGCCGGGATTATGATAATGT 58.665 45.455 2.18 0.00 0.00 2.71
46 47 6.009589 TGCCGGGATTATGATAATGTCAATT 58.990 36.000 2.18 0.00 40.97 2.32
109 117 4.147322 GCATTCGCCACACGTCCG 62.147 66.667 0.00 0.00 44.19 4.79
194 205 2.698274 GACTCCTGAGATTCTTCTCCCC 59.302 54.545 0.22 0.00 46.67 4.81
247 258 1.679944 CCGATCAGCATTGGGACTTGT 60.680 52.381 0.00 0.00 30.18 3.16
275 286 1.202687 CCTCCCAAGATCGCATAGCAA 60.203 52.381 0.00 0.00 0.00 3.91
323 340 2.356125 GGCCTGGAGCTGACATAGAAAA 60.356 50.000 0.00 0.00 43.05 2.29
333 350 7.653311 GGAGCTGACATAGAAAAACAAAACAAT 59.347 33.333 0.00 0.00 0.00 2.71
440 458 0.108804 TCAAGACGTCGCCAGGATTC 60.109 55.000 10.46 0.00 0.00 2.52
461 479 2.076100 CAAGTTTCAGATGCTGCCGTA 58.924 47.619 0.00 0.00 0.00 4.02
481 499 1.996798 ACTCGAGAGTCAAGTTCCCA 58.003 50.000 21.68 0.00 36.92 4.37
523 546 1.217244 GGCTGGCCTTCAAAGCATG 59.783 57.895 13.50 0.00 38.73 4.06
590 613 0.998928 AACCCACATGCCCACATAGA 59.001 50.000 0.00 0.00 33.67 1.98
591 614 1.225373 ACCCACATGCCCACATAGAT 58.775 50.000 0.00 0.00 33.67 1.98
592 615 2.417652 ACCCACATGCCCACATAGATA 58.582 47.619 0.00 0.00 33.67 1.98
596 619 2.802247 CACATGCCCACATAGATACGTG 59.198 50.000 0.00 0.00 33.67 4.49
637 661 9.781834 TTATTTTTACTGAAATGCCGACATTAG 57.218 29.630 0.00 0.00 45.90 1.73
662 691 7.182206 AGTGTACTCAGTATACTTCCCCAAAAT 59.818 37.037 8.38 0.00 37.20 1.82
678 707 7.878495 TCCCCAAAATATTCTAGGAAAAGCTA 58.122 34.615 0.00 0.00 0.00 3.32
679 708 7.778382 TCCCCAAAATATTCTAGGAAAAGCTAC 59.222 37.037 0.00 0.00 0.00 3.58
680 709 7.014326 CCCCAAAATATTCTAGGAAAAGCTACC 59.986 40.741 0.00 0.00 0.00 3.18
723 765 1.089920 GCGCTGATCCATTGTTCACT 58.910 50.000 0.00 0.00 0.00 3.41
767 816 3.758023 TGCATCTCAATCATCACCGTTTT 59.242 39.130 0.00 0.00 0.00 2.43
781 830 0.949105 CGTTTTCTACAGGCGGTGCT 60.949 55.000 0.00 0.00 0.00 4.40
789 838 1.165270 ACAGGCGGTGCTAAACAATC 58.835 50.000 0.00 0.00 0.00 2.67
792 841 1.226295 GCGGTGCTAAACAATCGCC 60.226 57.895 0.00 0.00 43.28 5.54
837 886 2.240918 ATCCCAAAGCAGCTCCCCA 61.241 57.895 0.00 0.00 0.00 4.96
944 1002 1.227527 CACACGCCAAGACCAGACA 60.228 57.895 0.00 0.00 0.00 3.41
945 1003 1.227556 ACACGCCAAGACCAGACAC 60.228 57.895 0.00 0.00 0.00 3.67
946 1004 1.961277 CACGCCAAGACCAGACACC 60.961 63.158 0.00 0.00 0.00 4.16
947 1005 2.425592 CGCCAAGACCAGACACCA 59.574 61.111 0.00 0.00 0.00 4.17
957 1015 1.455849 CAGACACCACCACCACCAT 59.544 57.895 0.00 0.00 0.00 3.55
981 1039 3.227614 TCACCACCTTTTAAAAGCCTCC 58.772 45.455 20.45 0.00 34.69 4.30
1271 1350 2.990479 CCCTTCAAGGTCGAGGGG 59.010 66.667 1.78 0.00 45.03 4.79
1545 1630 4.271049 CCATGTAGTAATCTTTGCAGTCCG 59.729 45.833 0.00 0.00 0.00 4.79
1577 1662 6.925718 CCACGTAGTACAGCATAGTAGTACTA 59.074 42.308 12.38 12.38 44.68 1.82
1653 1738 6.114187 TGTCTCATTACAGATGGTTTGACT 57.886 37.500 0.00 0.00 0.00 3.41
1738 1823 3.417275 CTTCCTCGCCATCGCTCGT 62.417 63.158 0.00 0.00 35.26 4.18
1745 1830 2.202919 CCATCGCTCGTGCCATGA 60.203 61.111 16.95 3.58 39.61 3.07
1755 1840 1.819632 GTGCCATGATCACCGGTCC 60.820 63.158 2.59 0.00 0.00 4.46
1791 1880 1.528309 CAGTCGTTTTGGGTGGCCT 60.528 57.895 3.32 0.00 0.00 5.19
1795 1884 0.893270 TCGTTTTGGGTGGCCTGATG 60.893 55.000 3.32 0.00 0.00 3.07
1825 1919 3.153919 GCTAGCTAGCTAGATGGACAGT 58.846 50.000 42.59 12.32 46.56 3.55
1826 1920 3.057596 GCTAGCTAGCTAGATGGACAGTG 60.058 52.174 42.59 21.54 46.56 3.66
1827 1921 3.025322 AGCTAGCTAGATGGACAGTGT 57.975 47.619 25.15 0.00 0.00 3.55
1828 1922 2.955660 AGCTAGCTAGATGGACAGTGTC 59.044 50.000 25.15 15.24 0.00 3.67
1857 1951 0.387622 GTCCATGTGTGTGCATGTGC 60.388 55.000 0.00 0.00 43.33 4.57
1888 1982 8.947055 AGCAAACAATTCTGTAATTTCACTTT 57.053 26.923 0.00 0.00 33.45 2.66
1926 2020 2.298610 TCATAAGTGATCCGCTCTCGT 58.701 47.619 0.00 0.00 0.00 4.18
1950 2044 2.202810 GCTAGCAGCTGTCCGTCC 60.203 66.667 16.64 0.00 38.45 4.79
1951 2045 3.006756 GCTAGCAGCTGTCCGTCCA 62.007 63.158 16.64 0.00 38.45 4.02
1953 2047 1.599606 CTAGCAGCTGTCCGTCCACT 61.600 60.000 16.64 3.46 0.00 4.00
1954 2048 0.323087 TAGCAGCTGTCCGTCCACTA 60.323 55.000 16.64 2.42 0.00 2.74
1955 2049 1.153745 GCAGCTGTCCGTCCACTAG 60.154 63.158 16.64 0.00 0.00 2.57
1957 2051 1.107114 CAGCTGTCCGTCCACTAGAT 58.893 55.000 5.25 0.00 0.00 1.98
1958 2052 1.066303 CAGCTGTCCGTCCACTAGATC 59.934 57.143 5.25 0.00 0.00 2.75
1959 2053 0.386113 GCTGTCCGTCCACTAGATCC 59.614 60.000 0.00 0.00 0.00 3.36
1977 2077 1.337384 CCGATCCCCATCACCTCACA 61.337 60.000 0.00 0.00 0.00 3.58
1978 2078 0.179073 CGATCCCCATCACCTCACAC 60.179 60.000 0.00 0.00 0.00 3.82
1979 2079 1.207791 GATCCCCATCACCTCACACT 58.792 55.000 0.00 0.00 0.00 3.55
1980 2080 1.561542 GATCCCCATCACCTCACACTT 59.438 52.381 0.00 0.00 0.00 3.16
1981 2081 0.984230 TCCCCATCACCTCACACTTC 59.016 55.000 0.00 0.00 0.00 3.01
1982 2082 0.987294 CCCCATCACCTCACACTTCT 59.013 55.000 0.00 0.00 0.00 2.85
1983 2083 1.065854 CCCCATCACCTCACACTTCTC 60.066 57.143 0.00 0.00 0.00 2.87
1984 2084 1.905215 CCCATCACCTCACACTTCTCT 59.095 52.381 0.00 0.00 0.00 3.10
1985 2085 2.093764 CCCATCACCTCACACTTCTCTC 60.094 54.545 0.00 0.00 0.00 3.20
1986 2086 2.830923 CCATCACCTCACACTTCTCTCT 59.169 50.000 0.00 0.00 0.00 3.10
1987 2087 3.260380 CCATCACCTCACACTTCTCTCTT 59.740 47.826 0.00 0.00 0.00 2.85
1988 2088 4.493547 CATCACCTCACACTTCTCTCTTC 58.506 47.826 0.00 0.00 0.00 2.87
1989 2089 3.838565 TCACCTCACACTTCTCTCTTCT 58.161 45.455 0.00 0.00 0.00 2.85
1990 2090 4.219115 TCACCTCACACTTCTCTCTTCTT 58.781 43.478 0.00 0.00 0.00 2.52
1991 2091 4.279671 TCACCTCACACTTCTCTCTTCTTC 59.720 45.833 0.00 0.00 0.00 2.87
1992 2092 4.280677 CACCTCACACTTCTCTCTTCTTCT 59.719 45.833 0.00 0.00 0.00 2.85
1993 2093 4.898861 ACCTCACACTTCTCTCTTCTTCTT 59.101 41.667 0.00 0.00 0.00 2.52
1994 2094 5.010617 ACCTCACACTTCTCTCTTCTTCTTC 59.989 44.000 0.00 0.00 0.00 2.87
1995 2095 5.243730 CCTCACACTTCTCTCTTCTTCTTCT 59.756 44.000 0.00 0.00 0.00 2.85
1996 2096 6.239289 CCTCACACTTCTCTCTTCTTCTTCTT 60.239 42.308 0.00 0.00 0.00 2.52
1997 2097 6.744112 TCACACTTCTCTCTTCTTCTTCTTC 58.256 40.000 0.00 0.00 0.00 2.87
1998 2098 6.549364 TCACACTTCTCTCTTCTTCTTCTTCT 59.451 38.462 0.00 0.00 0.00 2.85
1999 2099 7.069331 TCACACTTCTCTCTTCTTCTTCTTCTT 59.931 37.037 0.00 0.00 0.00 2.52
2000 2100 7.382218 CACACTTCTCTCTTCTTCTTCTTCTTC 59.618 40.741 0.00 0.00 0.00 2.87
2046 2146 2.879103 TTTTCCTCCACCACCATCTC 57.121 50.000 0.00 0.00 0.00 2.75
2133 2233 2.428171 GCAATGATTAGCCTTTGCCAGA 59.572 45.455 0.00 0.00 39.70 3.86
2200 2300 3.719268 TGTAGGGATCATGCAACAGTT 57.281 42.857 0.00 0.00 0.00 3.16
2255 2355 1.148048 GCATGCTTCCTCCTCCTCC 59.852 63.158 11.37 0.00 0.00 4.30
2263 2363 1.454847 CCTCCTCCTCCTCCGTCTG 60.455 68.421 0.00 0.00 0.00 3.51
2347 2447 2.100410 GTGTGCGATCGAGCGAGA 59.900 61.111 29.29 9.43 40.67 4.04
2365 2471 3.492656 CGAGAGAGAGAGAGACGGAGATT 60.493 52.174 0.00 0.00 0.00 2.40
2369 2475 4.136796 AGAGAGAGAGACGGAGATTGATG 58.863 47.826 0.00 0.00 0.00 3.07
2370 2476 4.133820 GAGAGAGAGACGGAGATTGATGA 58.866 47.826 0.00 0.00 0.00 2.92
2383 2658 5.435291 GAGATTGATGAAGGGAACATGTCT 58.565 41.667 0.00 0.00 0.00 3.41
2439 2717 4.215185 GGCTAGATCGGTGTTAGTACTACC 59.785 50.000 0.91 2.43 0.00 3.18
2465 2743 5.342433 TCTTATTGTATTGGTCCGTACGTG 58.658 41.667 15.21 5.96 0.00 4.49
2466 2744 3.872511 ATTGTATTGGTCCGTACGTGA 57.127 42.857 15.21 8.40 0.00 4.35
2467 2745 2.925578 TGTATTGGTCCGTACGTGAG 57.074 50.000 15.21 0.00 0.00 3.51
2468 2746 1.135315 TGTATTGGTCCGTACGTGAGC 60.135 52.381 21.37 21.37 0.00 4.26
2469 2747 1.133790 GTATTGGTCCGTACGTGAGCT 59.866 52.381 25.41 15.17 0.00 4.09
2470 2748 0.108804 ATTGGTCCGTACGTGAGCTG 60.109 55.000 25.41 8.54 0.00 4.24
2471 2749 1.457823 TTGGTCCGTACGTGAGCTGT 61.458 55.000 25.41 0.00 0.00 4.40
2495 2773 1.112315 AAATGGTGCTCGGGTTTGCA 61.112 50.000 0.00 0.00 36.79 4.08
2513 2791 2.680577 GCACTTTGCAGGAGAAAATGG 58.319 47.619 6.21 0.00 44.26 3.16
2534 2820 2.076207 TAGTGGGACGGCTATGCTAA 57.924 50.000 0.00 0.00 0.00 3.09
2614 2901 5.913514 CGGTCGTAGTGGATTTGTATAAGAG 59.086 44.000 0.00 0.00 0.00 2.85
2620 2907 7.755822 CGTAGTGGATTTGTATAAGAGGATAGC 59.244 40.741 0.00 0.00 0.00 2.97
2631 2918 6.942163 ATAAGAGGATAGCAGGATAAGCAA 57.058 37.500 0.00 0.00 0.00 3.91
2654 2941 3.623848 CACAAGGTCCGTGGAATCA 57.376 52.632 9.75 0.00 0.00 2.57
2659 2946 1.463674 AGGTCCGTGGAATCAATTGC 58.536 50.000 0.00 0.00 0.00 3.56
2699 2986 2.750301 TTATCGTCGTCGGTCATGAG 57.250 50.000 0.00 0.00 37.69 2.90
2711 3019 2.076100 GGTCATGAGCGATTTGTGTCA 58.924 47.619 9.50 0.00 0.00 3.58
2714 3022 3.058983 GTCATGAGCGATTTGTGTCACAA 60.059 43.478 14.48 14.48 36.11 3.33
2728 3036 2.026729 TGTCACAACTCCTGGTGAAACA 60.027 45.455 2.23 0.00 44.83 2.83
2737 3045 2.158813 TCCTGGTGAAACAGAACTGTCC 60.159 50.000 7.93 5.82 44.13 4.02
2738 3046 2.222027 CTGGTGAAACAGAACTGTCCC 58.778 52.381 7.93 6.87 44.13 4.46
2739 3047 1.133915 TGGTGAAACAGAACTGTCCCC 60.134 52.381 7.93 6.57 44.13 4.81
2742 3050 1.420138 TGAAACAGAACTGTCCCCTCC 59.580 52.381 7.93 0.00 44.13 4.30
2763 3072 6.083098 TCCGAATCATTTTGCTTTTTCTGA 57.917 33.333 0.00 0.00 0.00 3.27
2818 3130 6.208599 GGAGGGTAACAGAAACAATGATCAAA 59.791 38.462 0.00 0.00 39.74 2.69
2848 3161 0.238553 GTTTGAAGACAAGAGGCCGC 59.761 55.000 0.00 0.00 37.32 6.53
2865 3178 2.926586 GCCGCTTGTTTTCCCTTTGATC 60.927 50.000 0.00 0.00 0.00 2.92
2885 3198 1.937223 CTGACCACGCACTTTGTAACA 59.063 47.619 0.00 0.00 0.00 2.41
2929 3242 2.947652 CAGTGATGGCATCTTGGTTAGG 59.052 50.000 26.49 5.73 0.00 2.69
2930 3243 2.846206 AGTGATGGCATCTTGGTTAGGA 59.154 45.455 26.49 1.68 0.00 2.94
2931 3244 3.461085 AGTGATGGCATCTTGGTTAGGAT 59.539 43.478 26.49 0.02 0.00 3.24
2935 3248 1.202940 GGCATCTTGGTTAGGATCCCC 60.203 57.143 8.55 2.99 0.00 4.81
2936 3249 1.494721 GCATCTTGGTTAGGATCCCCA 59.505 52.381 8.55 6.08 33.88 4.96
2937 3250 2.749800 GCATCTTGGTTAGGATCCCCAC 60.750 54.545 8.55 5.15 33.88 4.61
2938 3251 2.352561 TCTTGGTTAGGATCCCCACA 57.647 50.000 8.55 0.00 33.88 4.17
2966 3279 3.077359 CAAACTGTTCCCATCCTGAGAC 58.923 50.000 0.00 0.00 0.00 3.36
3011 3324 3.446161 CCAACCAGCATGTCAAGATCAAT 59.554 43.478 0.00 0.00 0.00 2.57
3029 3342 0.969409 ATGGCCAGCTCTTTTGAGGC 60.969 55.000 13.05 0.40 46.30 4.70
3037 3350 2.027745 AGCTCTTTTGAGGCGATTCTCA 60.028 45.455 0.00 0.00 46.30 3.27
3068 3381 4.174009 GTCTCGAGAATCAACAATCGGAA 58.826 43.478 18.55 0.00 35.91 4.30
3069 3382 4.625742 GTCTCGAGAATCAACAATCGGAAA 59.374 41.667 18.55 0.00 35.91 3.13
3070 3383 5.120208 GTCTCGAGAATCAACAATCGGAAAA 59.880 40.000 18.55 0.00 35.91 2.29
3071 3384 5.348724 TCTCGAGAATCAACAATCGGAAAAG 59.651 40.000 14.01 0.00 35.91 2.27
3072 3385 5.234752 TCGAGAATCAACAATCGGAAAAGA 58.765 37.500 0.00 0.00 35.91 2.52
3073 3386 5.699001 TCGAGAATCAACAATCGGAAAAGAA 59.301 36.000 0.00 0.00 35.91 2.52
3074 3387 6.017933 CGAGAATCAACAATCGGAAAAGAAG 58.982 40.000 0.00 0.00 33.17 2.85
3075 3388 6.347725 CGAGAATCAACAATCGGAAAAGAAGT 60.348 38.462 0.00 0.00 33.17 3.01
3076 3389 6.903419 AGAATCAACAATCGGAAAAGAAGTC 58.097 36.000 0.00 0.00 0.00 3.01
3077 3390 4.725556 TCAACAATCGGAAAAGAAGTCG 57.274 40.909 0.00 0.00 0.00 4.18
3078 3391 4.373527 TCAACAATCGGAAAAGAAGTCGA 58.626 39.130 0.00 0.00 36.07 4.20
3079 3392 4.994852 TCAACAATCGGAAAAGAAGTCGAT 59.005 37.500 0.00 0.00 43.06 3.59
3081 3394 5.532025 ACAATCGGAAAAGAAGTCGATTC 57.468 39.130 6.80 0.00 46.31 2.52
3082 3395 4.091509 ACAATCGGAAAAGAAGTCGATTCG 59.908 41.667 0.00 0.00 46.31 3.34
3083 3396 3.564235 TCGGAAAAGAAGTCGATTCGA 57.436 42.857 4.29 4.29 43.16 3.71
3084 3397 4.106029 TCGGAAAAGAAGTCGATTCGAT 57.894 40.909 12.54 0.00 43.16 3.59
3085 3398 4.491676 TCGGAAAAGAAGTCGATTCGATT 58.508 39.130 12.54 5.01 43.16 3.34
3086 3399 5.643664 TCGGAAAAGAAGTCGATTCGATTA 58.356 37.500 12.54 0.00 43.16 1.75
3087 3400 6.270815 TCGGAAAAGAAGTCGATTCGATTAT 58.729 36.000 12.54 1.57 43.16 1.28
3088 3401 6.417044 TCGGAAAAGAAGTCGATTCGATTATC 59.583 38.462 12.54 10.60 43.16 1.75
3089 3402 6.345882 CGGAAAAGAAGTCGATTCGATTATCC 60.346 42.308 12.54 11.51 43.16 2.59
3090 3403 6.479001 GGAAAAGAAGTCGATTCGATTATCCA 59.521 38.462 12.54 0.00 43.16 3.41
3091 3404 7.011109 GGAAAAGAAGTCGATTCGATTATCCAA 59.989 37.037 12.54 0.00 43.16 3.53
3092 3405 7.843490 AAAGAAGTCGATTCGATTATCCAAA 57.157 32.000 12.54 0.00 43.16 3.28
3093 3406 7.843490 AAGAAGTCGATTCGATTATCCAAAA 57.157 32.000 12.54 0.00 43.16 2.44
3094 3407 7.235430 AGAAGTCGATTCGATTATCCAAAAC 57.765 36.000 12.54 0.00 43.16 2.43
3095 3408 6.816640 AGAAGTCGATTCGATTATCCAAAACA 59.183 34.615 12.54 0.00 43.16 2.83
3096 3409 6.589830 AGTCGATTCGATTATCCAAAACAG 57.410 37.500 12.54 0.00 38.42 3.16
3097 3410 6.106673 AGTCGATTCGATTATCCAAAACAGT 58.893 36.000 12.54 0.00 38.42 3.55
3098 3411 7.262772 AGTCGATTCGATTATCCAAAACAGTA 58.737 34.615 12.54 0.00 38.42 2.74
3099 3412 7.926555 AGTCGATTCGATTATCCAAAACAGTAT 59.073 33.333 12.54 0.00 38.42 2.12
3100 3413 8.004344 GTCGATTCGATTATCCAAAACAGTATG 58.996 37.037 12.54 0.00 39.59 2.39
3101 3414 7.923878 TCGATTCGATTATCCAAAACAGTATGA 59.076 33.333 4.29 0.00 39.69 2.15
3102 3415 8.217115 CGATTCGATTATCCAAAACAGTATGAG 58.783 37.037 0.00 0.00 39.69 2.90
3103 3416 9.261180 GATTCGATTATCCAAAACAGTATGAGA 57.739 33.333 0.00 0.00 39.69 3.27
3104 3417 9.613428 ATTCGATTATCCAAAACAGTATGAGAA 57.387 29.630 0.00 0.00 39.69 2.87
3105 3418 9.613428 TTCGATTATCCAAAACAGTATGAGAAT 57.387 29.630 0.00 0.00 39.69 2.40
3106 3419 9.261180 TCGATTATCCAAAACAGTATGAGAATC 57.739 33.333 0.00 0.00 39.69 2.52
3107 3420 8.217115 CGATTATCCAAAACAGTATGAGAATCG 58.783 37.037 11.49 11.49 39.69 3.34
3108 3421 9.261180 GATTATCCAAAACAGTATGAGAATCGA 57.739 33.333 0.00 0.00 39.69 3.59
3109 3422 9.784531 ATTATCCAAAACAGTATGAGAATCGAT 57.215 29.630 0.00 0.00 39.69 3.59
3111 3424 8.824159 ATCCAAAACAGTATGAGAATCGATAG 57.176 34.615 0.00 0.00 39.69 2.08
3112 3425 7.782049 TCCAAAACAGTATGAGAATCGATAGT 58.218 34.615 0.00 0.00 39.69 2.12
3113 3426 7.706607 TCCAAAACAGTATGAGAATCGATAGTG 59.293 37.037 0.00 0.00 39.69 2.74
3114 3427 7.340699 CAAAACAGTATGAGAATCGATAGTGC 58.659 38.462 0.00 0.00 39.69 4.40
3115 3428 5.774498 ACAGTATGAGAATCGATAGTGCA 57.226 39.130 0.00 0.00 39.69 4.57
3116 3429 6.149129 ACAGTATGAGAATCGATAGTGCAA 57.851 37.500 0.00 0.00 39.69 4.08
3117 3430 6.753180 ACAGTATGAGAATCGATAGTGCAAT 58.247 36.000 0.00 0.00 39.69 3.56
3118 3431 6.644181 ACAGTATGAGAATCGATAGTGCAATG 59.356 38.462 0.00 0.00 39.69 2.82
3119 3432 6.090493 CAGTATGAGAATCGATAGTGCAATGG 59.910 42.308 0.00 0.00 39.69 3.16
3120 3433 4.670896 TGAGAATCGATAGTGCAATGGA 57.329 40.909 0.00 0.00 38.61 3.41
3121 3434 5.022282 TGAGAATCGATAGTGCAATGGAA 57.978 39.130 0.00 0.00 38.61 3.53
3122 3435 5.427378 TGAGAATCGATAGTGCAATGGAAA 58.573 37.500 0.00 0.00 38.61 3.13
3123 3436 5.525012 TGAGAATCGATAGTGCAATGGAAAG 59.475 40.000 0.00 0.00 38.61 2.62
3124 3437 5.674525 AGAATCGATAGTGCAATGGAAAGA 58.325 37.500 0.00 0.00 37.40 2.52
3125 3438 5.525378 AGAATCGATAGTGCAATGGAAAGAC 59.475 40.000 0.00 0.00 37.40 3.01
3126 3439 4.200838 TCGATAGTGCAATGGAAAGACA 57.799 40.909 0.00 0.00 37.40 3.41
3127 3440 3.932710 TCGATAGTGCAATGGAAAGACAC 59.067 43.478 0.00 0.00 37.40 3.67
3128 3441 3.063997 CGATAGTGCAATGGAAAGACACC 59.936 47.826 0.00 0.00 31.58 4.16
3129 3442 2.664402 AGTGCAATGGAAAGACACCT 57.336 45.000 0.00 0.00 31.58 4.00
3130 3443 2.233271 AGTGCAATGGAAAGACACCTG 58.767 47.619 0.00 0.00 31.58 4.00
3131 3444 1.270550 GTGCAATGGAAAGACACCTGG 59.729 52.381 0.00 0.00 0.00 4.45
3132 3445 0.890683 GCAATGGAAAGACACCTGGG 59.109 55.000 0.00 0.00 0.00 4.45
3133 3446 1.547675 GCAATGGAAAGACACCTGGGA 60.548 52.381 0.00 0.00 0.00 4.37
3134 3447 2.875296 CAATGGAAAGACACCTGGGAA 58.125 47.619 0.00 0.00 0.00 3.97
3135 3448 2.558359 CAATGGAAAGACACCTGGGAAC 59.442 50.000 0.00 0.00 0.00 3.62
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
109 117 0.670546 TGGAAGCGTGCTAGTTGCTC 60.671 55.000 0.00 0.00 43.37 4.26
247 258 2.828520 GCGATCTTGGGAGGATAGATCA 59.171 50.000 0.00 0.00 42.74 2.92
323 340 6.687081 TCTGGAACGAACTATTGTTTTGTT 57.313 33.333 9.93 9.93 37.58 2.83
431 449 2.795329 TCTGAAACTTGGAATCCTGGC 58.205 47.619 0.00 0.00 0.00 4.85
440 458 0.169672 CGGCAGCATCTGAAACTTGG 59.830 55.000 0.00 0.00 32.44 3.61
481 499 6.169094 CACTCATCTGTCATTACCTGAAACT 58.831 40.000 0.00 0.00 35.07 2.66
523 546 2.695359 TGGTCATGGCTTTTCGTAGTC 58.305 47.619 0.00 0.00 0.00 2.59
636 660 5.202746 TGGGGAAGTATACTGAGTACACT 57.797 43.478 6.06 0.00 25.80 3.55
637 661 5.927281 TTGGGGAAGTATACTGAGTACAC 57.073 43.478 6.06 0.00 0.00 2.90
662 691 9.129532 GTAGTAGTGGTAGCTTTTCCTAGAATA 57.870 37.037 0.00 0.00 0.00 1.75
678 707 7.069578 CCATAGGTGAAATACAGTAGTAGTGGT 59.930 40.741 9.78 0.00 32.86 4.16
679 708 7.434492 CCATAGGTGAAATACAGTAGTAGTGG 58.566 42.308 9.78 0.00 32.86 4.00
680 709 6.924060 GCCATAGGTGAAATACAGTAGTAGTG 59.076 42.308 3.30 3.30 32.86 2.74
723 765 0.884704 GCGAGCTGTTTTCTCCACCA 60.885 55.000 0.00 0.00 0.00 4.17
767 816 0.970640 TGTTTAGCACCGCCTGTAGA 59.029 50.000 0.00 0.00 0.00 2.59
781 830 1.640210 ATGTGCGCGGCGATTGTTTA 61.640 50.000 28.54 4.49 0.00 2.01
792 841 1.956170 GGGTAGATGGATGTGCGCG 60.956 63.158 0.00 0.00 0.00 6.86
837 886 7.128883 GGTTATATAGAGAGGAGAGGAGAGGAT 59.871 44.444 0.00 0.00 0.00 3.24
944 1002 0.038166 GTGATGATGGTGGTGGTGGT 59.962 55.000 0.00 0.00 0.00 4.16
945 1003 0.680921 GGTGATGATGGTGGTGGTGG 60.681 60.000 0.00 0.00 0.00 4.61
946 1004 0.038021 TGGTGATGATGGTGGTGGTG 59.962 55.000 0.00 0.00 0.00 4.17
947 1005 0.038166 GTGGTGATGATGGTGGTGGT 59.962 55.000 0.00 0.00 0.00 4.16
957 1015 4.479158 AGGCTTTTAAAAGGTGGTGATGA 58.521 39.130 25.40 0.00 36.53 2.92
1600 1685 5.645067 TCACTTCATCCAACAGCTCTAATTG 59.355 40.000 0.00 0.00 0.00 2.32
1601 1686 5.809001 TCACTTCATCCAACAGCTCTAATT 58.191 37.500 0.00 0.00 0.00 1.40
1602 1687 5.426689 TCACTTCATCCAACAGCTCTAAT 57.573 39.130 0.00 0.00 0.00 1.73
1603 1688 4.890158 TCACTTCATCCAACAGCTCTAA 57.110 40.909 0.00 0.00 0.00 2.10
1604 1689 5.069648 CCTATCACTTCATCCAACAGCTCTA 59.930 44.000 0.00 0.00 0.00 2.43
1714 1799 0.175760 CGATGGCGAGGAAGAAGGAA 59.824 55.000 0.00 0.00 40.82 3.36
1738 1823 1.971505 GAGGACCGGTGATCATGGCA 61.972 60.000 14.63 0.00 0.00 4.92
1745 1830 1.698506 GATGAGAGAGGACCGGTGAT 58.301 55.000 14.63 0.00 0.00 3.06
1755 1840 0.729690 TGACGAGCACGATGAGAGAG 59.270 55.000 11.40 0.00 42.66 3.20
1791 1880 2.187685 CTAGCACGCAGGCCATCA 59.812 61.111 5.01 0.00 0.00 3.07
1795 1884 2.279784 CTAGCTAGCACGCAGGCC 60.280 66.667 18.83 0.00 0.00 5.19
1821 1915 1.003580 GGACATGGACATGGACACTGT 59.996 52.381 15.94 2.75 42.91 3.55
1825 1919 1.634973 ACATGGACATGGACATGGACA 59.365 47.619 25.79 13.56 46.60 4.02
1826 1920 2.019249 CACATGGACATGGACATGGAC 58.981 52.381 25.79 8.88 46.60 4.02
1827 1921 1.634973 ACACATGGACATGGACATGGA 59.365 47.619 25.79 1.10 46.60 3.41
1828 1922 1.746787 CACACATGGACATGGACATGG 59.253 52.381 25.79 19.31 46.60 3.66
1830 1924 2.439409 CACACACATGGACATGGACAT 58.561 47.619 15.94 0.00 42.91 3.06
1857 1951 8.807667 AAATTACAGAATTGTTTGCTCTTCAG 57.192 30.769 0.00 0.00 38.76 3.02
1897 1991 4.509600 GCGGATCACTTATGAAAGAAGGAG 59.490 45.833 0.00 0.00 38.69 3.69
1898 1992 4.162320 AGCGGATCACTTATGAAAGAAGGA 59.838 41.667 0.00 0.00 38.69 3.36
1899 1993 4.446371 AGCGGATCACTTATGAAAGAAGG 58.554 43.478 0.00 0.00 38.69 3.46
1902 1996 4.498177 CGAGAGCGGATCACTTATGAAAGA 60.498 45.833 0.00 0.00 38.69 2.52
1947 2041 1.258676 GGGGATCGGATCTAGTGGAC 58.741 60.000 16.96 0.00 0.00 4.02
1948 2042 0.857675 TGGGGATCGGATCTAGTGGA 59.142 55.000 16.96 0.00 0.00 4.02
1949 2043 1.827969 GATGGGGATCGGATCTAGTGG 59.172 57.143 16.96 0.00 0.00 4.00
1950 2044 2.232452 GTGATGGGGATCGGATCTAGTG 59.768 54.545 16.96 0.00 0.00 2.74
1951 2045 2.530701 GTGATGGGGATCGGATCTAGT 58.469 52.381 16.96 2.33 0.00 2.57
1953 2047 1.433199 AGGTGATGGGGATCGGATCTA 59.567 52.381 16.96 5.47 0.00 1.98
1954 2048 0.192064 AGGTGATGGGGATCGGATCT 59.808 55.000 16.96 0.00 0.00 2.75
1955 2049 0.610687 GAGGTGATGGGGATCGGATC 59.389 60.000 9.54 9.54 0.00 3.36
1957 2051 1.048724 GTGAGGTGATGGGGATCGGA 61.049 60.000 0.00 0.00 0.00 4.55
1958 2052 1.337384 TGTGAGGTGATGGGGATCGG 61.337 60.000 0.00 0.00 0.00 4.18
1959 2053 0.179073 GTGTGAGGTGATGGGGATCG 60.179 60.000 0.00 0.00 0.00 3.69
1977 2077 7.839680 AGAAGAAGAAGAAGAAGAGAGAAGT 57.160 36.000 0.00 0.00 0.00 3.01
1978 2078 8.579863 AGAAGAAGAAGAAGAAGAAGAGAGAAG 58.420 37.037 0.00 0.00 0.00 2.85
1979 2079 8.477419 AGAAGAAGAAGAAGAAGAAGAGAGAA 57.523 34.615 0.00 0.00 0.00 2.87
1980 2080 8.477419 AAGAAGAAGAAGAAGAAGAAGAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
1981 2081 8.579863 AGAAGAAGAAGAAGAAGAAGAAGAGAG 58.420 37.037 0.00 0.00 0.00 3.20
1982 2082 8.477419 AGAAGAAGAAGAAGAAGAAGAAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
1983 2083 9.196552 GAAGAAGAAGAAGAAGAAGAAGAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
1984 2084 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1985 2085 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1986 2086 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1987 2087 8.923270 AGAAGAAGAAGAAGAAGAAGAAGAAGA 58.077 33.333 0.00 0.00 0.00 2.87
1988 2088 9.546428 AAGAAGAAGAAGAAGAAGAAGAAGAAG 57.454 33.333 0.00 0.00 0.00 2.85
1989 2089 9.541143 GAAGAAGAAGAAGAAGAAGAAGAAGAA 57.459 33.333 0.00 0.00 0.00 2.52
1990 2090 8.147704 GGAAGAAGAAGAAGAAGAAGAAGAAGA 58.852 37.037 0.00 0.00 0.00 2.87
1991 2091 7.930865 TGGAAGAAGAAGAAGAAGAAGAAGAAG 59.069 37.037 0.00 0.00 0.00 2.85
1992 2092 7.796054 TGGAAGAAGAAGAAGAAGAAGAAGAA 58.204 34.615 0.00 0.00 0.00 2.52
1993 2093 7.366847 TGGAAGAAGAAGAAGAAGAAGAAGA 57.633 36.000 0.00 0.00 0.00 2.87
1994 2094 7.307930 GCTTGGAAGAAGAAGAAGAAGAAGAAG 60.308 40.741 0.00 0.00 0.00 2.85
1995 2095 6.484977 GCTTGGAAGAAGAAGAAGAAGAAGAA 59.515 38.462 0.00 0.00 0.00 2.52
1996 2096 5.994668 GCTTGGAAGAAGAAGAAGAAGAAGA 59.005 40.000 0.00 0.00 0.00 2.87
1997 2097 5.997129 AGCTTGGAAGAAGAAGAAGAAGAAG 59.003 40.000 0.00 0.00 0.00 2.85
1998 2098 5.934781 AGCTTGGAAGAAGAAGAAGAAGAA 58.065 37.500 0.00 0.00 0.00 2.52
1999 2099 5.559148 AGCTTGGAAGAAGAAGAAGAAGA 57.441 39.130 0.00 0.00 0.00 2.87
2000 2100 6.039159 ACAAAGCTTGGAAGAAGAAGAAGAAG 59.961 38.462 8.15 0.00 34.12 2.85
2200 2300 0.884704 GCAAGGTGACAAAGGAGCGA 60.885 55.000 0.00 0.00 0.00 4.93
2331 2431 2.041366 CTCTCTCGCTCGATCGCACA 62.041 60.000 11.09 0.00 0.00 4.57
2347 2447 3.924114 TCAATCTCCGTCTCTCTCTCT 57.076 47.619 0.00 0.00 0.00 3.10
2365 2471 4.582869 CAGAAGACATGTTCCCTTCATCA 58.417 43.478 21.36 0.00 38.89 3.07
2369 2475 2.485814 GTGCAGAAGACATGTTCCCTTC 59.514 50.000 14.81 14.81 37.23 3.46
2370 2476 2.508526 GTGCAGAAGACATGTTCCCTT 58.491 47.619 0.00 0.00 0.00 3.95
2439 2717 6.477688 ACGTACGGACCAATACAATAAGATTG 59.522 38.462 21.06 0.00 33.63 2.67
2456 2734 1.873863 CTCACAGCTCACGTACGGA 59.126 57.895 21.06 12.72 0.00 4.69
2495 2773 5.416952 CACTATCCATTTTCTCCTGCAAAGT 59.583 40.000 0.00 0.00 0.00 2.66
2512 2790 0.037232 GCATAGCCGTCCCACTATCC 60.037 60.000 0.00 0.00 0.00 2.59
2513 2791 0.969894 AGCATAGCCGTCCCACTATC 59.030 55.000 0.00 0.00 0.00 2.08
2614 2901 2.810852 GTGCTTGCTTATCCTGCTATCC 59.189 50.000 0.00 0.00 0.00 2.59
2620 2907 1.825090 TGTGGTGCTTGCTTATCCTG 58.175 50.000 0.00 0.00 0.00 3.86
2659 2946 2.620112 CCCGTCAAAGTGCTGCCAG 61.620 63.158 0.00 0.00 0.00 4.85
2704 3012 1.557371 TCACCAGGAGTTGTGACACAA 59.443 47.619 17.02 17.02 36.62 3.33
2711 3019 3.054361 AGTTCTGTTTCACCAGGAGTTGT 60.054 43.478 0.00 0.00 33.14 3.32
2714 3022 2.505819 ACAGTTCTGTTTCACCAGGAGT 59.494 45.455 0.00 0.00 33.14 3.85
2728 3036 1.196012 GATTCGGAGGGGACAGTTCT 58.804 55.000 0.00 0.00 0.00 3.01
2737 3045 3.874392 AAAGCAAAATGATTCGGAGGG 57.126 42.857 0.00 0.00 0.00 4.30
2738 3046 5.346822 CAGAAAAAGCAAAATGATTCGGAGG 59.653 40.000 0.00 0.00 0.00 4.30
2739 3047 6.151691 TCAGAAAAAGCAAAATGATTCGGAG 58.848 36.000 0.00 0.00 0.00 4.63
2742 3050 6.142161 TCGTTCAGAAAAAGCAAAATGATTCG 59.858 34.615 0.00 0.00 0.00 3.34
2763 3072 0.322975 AGCACTCTTGATGGCTCGTT 59.677 50.000 0.00 0.00 28.71 3.85
2818 3130 1.746787 GTCTTCAAACCAACCCGTTGT 59.253 47.619 6.81 0.00 38.85 3.32
2848 3161 4.584325 TGGTCAGATCAAAGGGAAAACAAG 59.416 41.667 0.00 0.00 0.00 3.16
2865 3178 1.937223 TGTTACAAAGTGCGTGGTCAG 59.063 47.619 0.00 0.00 0.00 3.51
2929 3242 6.096673 ACAGTTTGTATTTTTGTGGGGATC 57.903 37.500 0.00 0.00 0.00 3.36
2930 3243 6.463755 GGAACAGTTTGTATTTTTGTGGGGAT 60.464 38.462 0.00 0.00 0.00 3.85
2931 3244 5.163395 GGAACAGTTTGTATTTTTGTGGGGA 60.163 40.000 0.00 0.00 0.00 4.81
2938 3251 7.255942 CTCAGGATGGGAACAGTTTGTATTTTT 60.256 37.037 0.00 0.00 41.11 1.94
3011 3324 1.604593 GCCTCAAAAGAGCTGGCCA 60.605 57.895 4.71 4.71 37.81 5.36
3029 3342 0.093026 GACGCGGTTGTTGAGAATCG 59.907 55.000 12.47 0.00 38.61 3.34
3037 3350 0.038526 ATTCTCGAGACGCGGTTGTT 60.039 50.000 16.36 0.00 41.33 2.83
3068 3381 7.843490 TTTGGATAATCGAATCGACTTCTTT 57.157 32.000 7.77 0.05 39.18 2.52
3069 3382 7.333423 TGTTTTGGATAATCGAATCGACTTCTT 59.667 33.333 7.77 0.46 39.18 2.52
3070 3383 6.816640 TGTTTTGGATAATCGAATCGACTTCT 59.183 34.615 7.77 0.00 39.18 2.85
3071 3384 7.000575 TGTTTTGGATAATCGAATCGACTTC 57.999 36.000 7.77 5.17 39.18 3.01
3072 3385 6.594159 ACTGTTTTGGATAATCGAATCGACTT 59.406 34.615 7.77 6.53 39.18 3.01
3073 3386 6.106673 ACTGTTTTGGATAATCGAATCGACT 58.893 36.000 7.77 0.00 39.18 4.18
3074 3387 6.345920 ACTGTTTTGGATAATCGAATCGAC 57.654 37.500 7.77 0.00 39.18 4.20
3075 3388 7.923878 TCATACTGTTTTGGATAATCGAATCGA 59.076 33.333 8.12 8.12 41.13 3.59
3076 3389 8.072238 TCATACTGTTTTGGATAATCGAATCG 57.928 34.615 0.00 0.00 0.00 3.34
3077 3390 9.261180 TCTCATACTGTTTTGGATAATCGAATC 57.739 33.333 0.00 0.00 0.00 2.52
3078 3391 9.613428 TTCTCATACTGTTTTGGATAATCGAAT 57.387 29.630 0.00 0.00 0.00 3.34
3079 3392 9.613428 ATTCTCATACTGTTTTGGATAATCGAA 57.387 29.630 0.00 0.00 0.00 3.71
3080 3393 9.261180 GATTCTCATACTGTTTTGGATAATCGA 57.739 33.333 0.00 0.00 0.00 3.59
3081 3394 8.217115 CGATTCTCATACTGTTTTGGATAATCG 58.783 37.037 0.00 0.00 36.17 3.34
3082 3395 9.261180 TCGATTCTCATACTGTTTTGGATAATC 57.739 33.333 0.00 0.00 0.00 1.75
3083 3396 9.784531 ATCGATTCTCATACTGTTTTGGATAAT 57.215 29.630 0.00 0.00 0.00 1.28
3085 3398 9.914131 CTATCGATTCTCATACTGTTTTGGATA 57.086 33.333 1.71 0.00 0.00 2.59
3086 3399 8.424918 ACTATCGATTCTCATACTGTTTTGGAT 58.575 33.333 1.71 0.00 0.00 3.41
3087 3400 7.706607 CACTATCGATTCTCATACTGTTTTGGA 59.293 37.037 1.71 0.00 0.00 3.53
3088 3401 7.517417 GCACTATCGATTCTCATACTGTTTTGG 60.517 40.741 1.71 0.00 0.00 3.28
3089 3402 7.010460 TGCACTATCGATTCTCATACTGTTTTG 59.990 37.037 1.71 0.00 0.00 2.44
3090 3403 7.041721 TGCACTATCGATTCTCATACTGTTTT 58.958 34.615 1.71 0.00 0.00 2.43
3091 3404 6.573434 TGCACTATCGATTCTCATACTGTTT 58.427 36.000 1.71 0.00 0.00 2.83
3092 3405 6.149129 TGCACTATCGATTCTCATACTGTT 57.851 37.500 1.71 0.00 0.00 3.16
3093 3406 5.774498 TGCACTATCGATTCTCATACTGT 57.226 39.130 1.71 0.00 0.00 3.55
3094 3407 6.090493 CCATTGCACTATCGATTCTCATACTG 59.910 42.308 1.71 0.00 0.00 2.74
3095 3408 6.015095 TCCATTGCACTATCGATTCTCATACT 60.015 38.462 1.71 0.00 0.00 2.12
3096 3409 6.159293 TCCATTGCACTATCGATTCTCATAC 58.841 40.000 1.71 0.00 0.00 2.39
3097 3410 6.345096 TCCATTGCACTATCGATTCTCATA 57.655 37.500 1.71 0.00 0.00 2.15
3098 3411 5.219343 TCCATTGCACTATCGATTCTCAT 57.781 39.130 1.71 0.00 0.00 2.90
3099 3412 4.670896 TCCATTGCACTATCGATTCTCA 57.329 40.909 1.71 0.00 0.00 3.27
3100 3413 5.755375 TCTTTCCATTGCACTATCGATTCTC 59.245 40.000 1.71 0.00 0.00 2.87
3101 3414 5.525378 GTCTTTCCATTGCACTATCGATTCT 59.475 40.000 1.71 0.00 0.00 2.40
3102 3415 5.294306 TGTCTTTCCATTGCACTATCGATTC 59.706 40.000 1.71 0.00 0.00 2.52
3103 3416 5.065218 GTGTCTTTCCATTGCACTATCGATT 59.935 40.000 1.71 0.00 0.00 3.34
3104 3417 4.572389 GTGTCTTTCCATTGCACTATCGAT 59.428 41.667 2.16 2.16 0.00 3.59
3105 3418 3.932710 GTGTCTTTCCATTGCACTATCGA 59.067 43.478 0.00 0.00 0.00 3.59
3106 3419 3.063997 GGTGTCTTTCCATTGCACTATCG 59.936 47.826 0.00 0.00 0.00 2.92
3107 3420 4.095483 CAGGTGTCTTTCCATTGCACTATC 59.905 45.833 0.00 0.00 0.00 2.08
3108 3421 4.012374 CAGGTGTCTTTCCATTGCACTAT 58.988 43.478 0.00 0.00 0.00 2.12
3109 3422 3.411446 CAGGTGTCTTTCCATTGCACTA 58.589 45.455 0.00 0.00 0.00 2.74
3110 3423 2.233271 CAGGTGTCTTTCCATTGCACT 58.767 47.619 0.00 0.00 0.00 4.40
3111 3424 1.270550 CCAGGTGTCTTTCCATTGCAC 59.729 52.381 0.00 0.00 0.00 4.57
3112 3425 1.619654 CCAGGTGTCTTTCCATTGCA 58.380 50.000 0.00 0.00 0.00 4.08
3113 3426 0.890683 CCCAGGTGTCTTTCCATTGC 59.109 55.000 0.00 0.00 0.00 3.56
3114 3427 2.558359 GTTCCCAGGTGTCTTTCCATTG 59.442 50.000 0.00 0.00 0.00 2.82
3115 3428 2.490902 GGTTCCCAGGTGTCTTTCCATT 60.491 50.000 0.00 0.00 0.00 3.16
3116 3429 1.075536 GGTTCCCAGGTGTCTTTCCAT 59.924 52.381 0.00 0.00 0.00 3.41
3117 3430 0.476771 GGTTCCCAGGTGTCTTTCCA 59.523 55.000 0.00 0.00 0.00 3.53
3118 3431 0.476771 TGGTTCCCAGGTGTCTTTCC 59.523 55.000 0.00 0.00 0.00 3.13
3119 3432 2.586648 ATGGTTCCCAGGTGTCTTTC 57.413 50.000 0.00 0.00 36.75 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.