Multiple sequence alignment - TraesCS6B01G351600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G351600 chr6B 100.000 3464 0 0 1 3464 617037049 617040512 0.000000e+00 6397.0
1 TraesCS6B01G351600 chr6B 90.551 381 32 3 3085 3464 78317516 78317139 5.160000e-138 501.0
2 TraesCS6B01G351600 chr6B 90.263 380 35 1 3085 3464 78272949 78272572 2.400000e-136 496.0
3 TraesCS6B01G351600 chr6B 91.218 353 29 2 2730 3081 78317910 78317559 2.420000e-131 479.0
4 TraesCS6B01G351600 chr6B 90.252 318 18 7 136 450 616456959 616456652 1.500000e-108 403.0
5 TraesCS6B01G351600 chr6A 91.800 1000 62 9 1661 2659 555427016 555427996 0.000000e+00 1375.0
6 TraesCS6B01G351600 chr6A 89.091 1100 64 24 484 1556 555425862 555426932 0.000000e+00 1315.0
7 TraesCS6B01G351600 chr6A 87.413 286 29 5 1 285 555425481 555425760 4.310000e-84 322.0
8 TraesCS6B01G351600 chr6D 90.640 1015 79 6 1660 2659 410152966 410153979 0.000000e+00 1334.0
9 TraesCS6B01G351600 chr6D 91.962 846 50 9 826 1662 410152068 410152904 0.000000e+00 1170.0
10 TraesCS6B01G351600 chr6D 87.755 196 8 4 502 682 410151781 410151975 7.530000e-52 215.0
11 TraesCS6B01G351600 chr5D 83.404 946 110 22 1725 2627 563751188 563752129 0.000000e+00 833.0
12 TraesCS6B01G351600 chr5D 80.641 811 109 25 1717 2503 341035111 341035897 4.980000e-163 584.0
13 TraesCS6B01G351600 chr5D 89.085 284 25 3 1255 1535 563750820 563751100 7.120000e-92 348.0
14 TraesCS6B01G351600 chr5D 86.161 224 16 5 995 1206 563750284 563750504 9.670000e-56 228.0
15 TraesCS6B01G351600 chr5D 94.872 39 2 0 1648 1686 341054052 341054090 1.040000e-05 62.1
16 TraesCS6B01G351600 chr4A 82.019 951 121 19 1720 2627 608837541 608836598 0.000000e+00 763.0
17 TraesCS6B01G351600 chr4A 84.793 651 68 14 1818 2465 743111754 743112376 2.940000e-175 625.0
18 TraesCS6B01G351600 chr4A 83.393 560 61 12 998 1547 743111155 743111692 1.120000e-134 490.0
19 TraesCS6B01G351600 chr4A 88.214 280 27 3 1255 1531 608837917 608837641 2.580000e-86 329.0
20 TraesCS6B01G351600 chr4A 85.973 221 16 5 998 1206 608838383 608838166 4.500000e-54 222.0
21 TraesCS6B01G351600 chr7D 86.798 659 74 6 1818 2465 1184100 1184756 0.000000e+00 723.0
22 TraesCS6B01G351600 chr7D 94.118 357 20 1 2723 3078 180707105 180707461 3.040000e-150 542.0
23 TraesCS6B01G351600 chr7D 91.842 380 28 3 3085 3464 180707507 180707883 8.520000e-146 527.0
24 TraesCS6B01G351600 chr7A 84.581 668 86 12 1818 2471 1181576 1182240 0.000000e+00 647.0
25 TraesCS6B01G351600 chr5B 80.736 815 114 23 1711 2503 400450369 400451162 2.300000e-166 595.0
26 TraesCS6B01G351600 chr3D 92.632 380 27 1 3085 3464 14790271 14789893 2.350000e-151 545.0
27 TraesCS6B01G351600 chr3D 90.314 382 33 3 3085 3464 581722791 581722412 6.680000e-137 497.0
28 TraesCS6B01G351600 chr3D 91.268 355 30 1 2728 3081 581723189 581722835 1.870000e-132 483.0
29 TraesCS6B01G351600 chr7B 91.053 380 28 4 3085 3464 439562662 439562289 3.080000e-140 508.0
30 TraesCS6B01G351600 chr7B 91.597 357 26 4 2728 3081 71085745 71085390 1.120000e-134 490.0
31 TraesCS6B01G351600 chr7B 89.402 368 32 6 2718 3081 439563069 439562705 1.130000e-124 457.0
32 TraesCS6B01G351600 chr1B 90.052 382 36 2 3085 3464 30391645 30391264 8.640000e-136 494.0
33 TraesCS6B01G351600 chr3B 89.764 381 37 2 3086 3464 11864791 11865171 1.450000e-133 486.0
34 TraesCS6B01G351600 chr3B 89.764 381 36 3 3086 3464 739929157 739928778 5.200000e-133 484.0
35 TraesCS6B01G351600 chr3B 90.556 360 30 4 2722 3078 11864386 11864744 1.130000e-129 473.0
36 TraesCS6B01G351600 chr3B 90.556 360 30 4 2722 3078 817790925 817791283 1.130000e-129 473.0
37 TraesCS6B01G351600 chr3B 90.449 356 30 4 2729 3081 739929555 739929201 1.880000e-127 466.0
38 TraesCS6B01G351600 chr5A 90.960 354 28 4 2728 3078 616435206 616435558 1.130000e-129 473.0
39 TraesCS6B01G351600 chrUn 83.160 481 43 16 1089 1550 51489946 51489485 4.160000e-109 405.0
40 TraesCS6B01G351600 chrUn 90.323 62 4 1 293 352 356125233 356125172 2.870000e-11 80.5
41 TraesCS6B01G351600 chrUn 90.323 62 4 1 293 352 450902635 450902574 2.870000e-11 80.5
42 TraesCS6B01G351600 chrUn 90.323 62 4 1 293 352 457834063 457834002 2.870000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G351600 chr6B 617037049 617040512 3463 False 6397.000000 6397 100.000000 1 3464 1 chr6B.!!$F1 3463
1 TraesCS6B01G351600 chr6B 78317139 78317910 771 True 490.000000 501 90.884500 2730 3464 2 chr6B.!!$R3 734
2 TraesCS6B01G351600 chr6A 555425481 555427996 2515 False 1004.000000 1375 89.434667 1 2659 3 chr6A.!!$F1 2658
3 TraesCS6B01G351600 chr6D 410151781 410153979 2198 False 906.333333 1334 90.119000 502 2659 3 chr6D.!!$F1 2157
4 TraesCS6B01G351600 chr5D 341035111 341035897 786 False 584.000000 584 80.641000 1717 2503 1 chr5D.!!$F1 786
5 TraesCS6B01G351600 chr5D 563750284 563752129 1845 False 469.666667 833 86.216667 995 2627 3 chr5D.!!$F3 1632
6 TraesCS6B01G351600 chr4A 743111155 743112376 1221 False 557.500000 625 84.093000 998 2465 2 chr4A.!!$F1 1467
7 TraesCS6B01G351600 chr4A 608836598 608838383 1785 True 438.000000 763 85.402000 998 2627 3 chr4A.!!$R1 1629
8 TraesCS6B01G351600 chr7D 1184100 1184756 656 False 723.000000 723 86.798000 1818 2465 1 chr7D.!!$F1 647
9 TraesCS6B01G351600 chr7D 180707105 180707883 778 False 534.500000 542 92.980000 2723 3464 2 chr7D.!!$F2 741
10 TraesCS6B01G351600 chr7A 1181576 1182240 664 False 647.000000 647 84.581000 1818 2471 1 chr7A.!!$F1 653
11 TraesCS6B01G351600 chr5B 400450369 400451162 793 False 595.000000 595 80.736000 1711 2503 1 chr5B.!!$F1 792
12 TraesCS6B01G351600 chr3D 581722412 581723189 777 True 490.000000 497 90.791000 2728 3464 2 chr3D.!!$R2 736
13 TraesCS6B01G351600 chr7B 439562289 439563069 780 True 482.500000 508 90.227500 2718 3464 2 chr7B.!!$R2 746
14 TraesCS6B01G351600 chr3B 11864386 11865171 785 False 479.500000 486 90.160000 2722 3464 2 chr3B.!!$F2 742
15 TraesCS6B01G351600 chr3B 739928778 739929555 777 True 475.000000 484 90.106500 2729 3464 2 chr3B.!!$R1 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
655 672 0.231534 CGTCATGCATGATCTCACGC 59.768 55.0 30.89 15.66 39.3 5.34 F
1482 1839 1.261480 TGAGAGTGGAGCCAGAAGAC 58.739 55.0 0.00 0.00 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 2876 0.478072 TGTCATCCAGCAAACCAGGT 59.522 50.0 0.0 0.0 0.0 4.00 R
3420 3980 0.039326 ACCAGCTACCACCGACTACT 59.961 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.065600 CGGCACCACCACAAAACAG 59.934 57.895 0.00 0.00 39.03 3.16
27 28 0.385390 GGCACCACCACAAAACAGAG 59.615 55.000 0.00 0.00 38.86 3.35
29 30 1.065551 GCACCACCACAAAACAGAGAC 59.934 52.381 0.00 0.00 0.00 3.36
32 34 4.133820 CACCACCACAAAACAGAGACATA 58.866 43.478 0.00 0.00 0.00 2.29
99 101 6.264841 ACTTGCTTGAAGAGAATCCAATTC 57.735 37.500 0.00 0.00 36.00 2.17
165 167 6.371809 TTGAGTGGTAAACATTGACAGAAC 57.628 37.500 0.00 0.00 0.00 3.01
167 169 6.119536 TGAGTGGTAAACATTGACAGAACTT 58.880 36.000 0.00 0.00 0.00 2.66
183 185 5.308237 ACAGAACTTCAGACCATCTTAGGTT 59.692 40.000 0.00 0.00 43.38 3.50
201 203 4.284178 AGGTTAGGCATTGCATTCTGAAT 58.716 39.130 11.39 0.00 0.00 2.57
217 219 7.621426 GCATTCTGAATTTGTGAATTTCAGCTG 60.621 37.037 7.63 7.63 35.65 4.24
228 230 4.141756 TGAATTTCAGCTGAAAAGGGCAAA 60.142 37.500 37.81 18.89 45.81 3.68
237 239 4.440880 CTGAAAAGGGCAAACAACAATCA 58.559 39.130 0.00 0.00 0.00 2.57
244 246 2.340337 GCAAACAACAATCAGCATCCC 58.660 47.619 0.00 0.00 0.00 3.85
250 252 2.124151 AATCAGCATCCCCGCCAC 60.124 61.111 0.00 0.00 0.00 5.01
255 257 2.124151 GCATCCCCGCCACTGAAT 60.124 61.111 0.00 0.00 0.00 2.57
264 266 1.406069 CCGCCACTGAATAAGCTCTGT 60.406 52.381 0.00 0.00 0.00 3.41
265 267 2.350522 CGCCACTGAATAAGCTCTGTT 58.649 47.619 0.00 0.00 0.00 3.16
269 271 4.378874 GCCACTGAATAAGCTCTGTTTGAC 60.379 45.833 0.00 0.00 0.00 3.18
270 272 4.756642 CCACTGAATAAGCTCTGTTTGACA 59.243 41.667 0.00 0.00 0.00 3.58
302 304 5.874093 ACTTGTCAGGACTTCATCTGAAAT 58.126 37.500 0.65 0.00 41.07 2.17
304 306 7.453393 ACTTGTCAGGACTTCATCTGAAATAA 58.547 34.615 0.65 0.00 41.07 1.40
305 307 8.105829 ACTTGTCAGGACTTCATCTGAAATAAT 58.894 33.333 0.65 0.00 41.07 1.28
306 308 7.854557 TGTCAGGACTTCATCTGAAATAATG 57.145 36.000 0.65 0.00 41.07 1.90
307 309 7.623630 TGTCAGGACTTCATCTGAAATAATGA 58.376 34.615 0.65 0.00 41.07 2.57
308 310 8.270030 TGTCAGGACTTCATCTGAAATAATGAT 58.730 33.333 0.65 0.00 41.07 2.45
309 311 8.557864 GTCAGGACTTCATCTGAAATAATGATG 58.442 37.037 0.00 0.00 41.07 3.07
310 312 7.228108 TCAGGACTTCATCTGAAATAATGATGC 59.772 37.037 0.00 0.00 37.11 3.91
312 314 6.489361 GGACTTCATCTGAAATAATGATGCCT 59.511 38.462 0.00 0.00 37.91 4.75
313 315 7.273320 ACTTCATCTGAAATAATGATGCCTG 57.727 36.000 0.00 0.00 37.91 4.85
314 316 6.264744 ACTTCATCTGAAATAATGATGCCTGG 59.735 38.462 0.00 0.00 37.91 4.45
315 317 5.944135 TCATCTGAAATAATGATGCCTGGA 58.056 37.500 0.00 0.00 37.91 3.86
316 318 5.766670 TCATCTGAAATAATGATGCCTGGAC 59.233 40.000 0.00 0.00 37.91 4.02
317 319 5.114764 TCTGAAATAATGATGCCTGGACA 57.885 39.130 0.00 0.00 0.00 4.02
318 320 5.698104 TCTGAAATAATGATGCCTGGACAT 58.302 37.500 0.00 0.00 0.00 3.06
319 321 5.766670 TCTGAAATAATGATGCCTGGACATC 59.233 40.000 18.33 18.33 45.51 3.06
321 323 4.736611 AATAATGATGCCTGGACATCCT 57.263 40.909 20.74 12.82 44.84 3.24
322 324 4.736611 ATAATGATGCCTGGACATCCTT 57.263 40.909 20.74 19.27 44.84 3.36
323 325 2.653234 ATGATGCCTGGACATCCTTC 57.347 50.000 20.74 5.89 44.84 3.46
324 326 0.548031 TGATGCCTGGACATCCTTCC 59.452 55.000 20.74 4.97 44.84 3.46
325 327 0.842635 GATGCCTGGACATCCTTCCT 59.157 55.000 15.78 0.00 40.52 3.36
326 328 0.549950 ATGCCTGGACATCCTTCCTG 59.450 55.000 0.00 0.00 36.51 3.86
331 333 1.005215 CTGGACATCCTTCCTGCCTTT 59.995 52.381 0.00 0.00 36.51 3.11
332 334 1.428912 TGGACATCCTTCCTGCCTTTT 59.571 47.619 0.00 0.00 36.51 2.27
333 335 2.095461 GGACATCCTTCCTGCCTTTTC 58.905 52.381 0.00 0.00 32.24 2.29
334 336 1.740025 GACATCCTTCCTGCCTTTTCG 59.260 52.381 0.00 0.00 0.00 3.46
336 338 2.224769 ACATCCTTCCTGCCTTTTCGAA 60.225 45.455 0.00 0.00 0.00 3.71
338 340 2.227194 TCCTTCCTGCCTTTTCGAAAC 58.773 47.619 10.79 0.00 0.00 2.78
339 341 1.069227 CCTTCCTGCCTTTTCGAAACG 60.069 52.381 10.79 8.89 0.00 3.60
340 342 1.871039 CTTCCTGCCTTTTCGAAACGA 59.129 47.619 15.33 0.00 0.00 3.85
341 343 1.956297 TCCTGCCTTTTCGAAACGAA 58.044 45.000 15.33 2.48 44.28 3.85
342 344 2.500229 TCCTGCCTTTTCGAAACGAAT 58.500 42.857 15.33 0.00 45.28 3.34
343 345 3.666274 TCCTGCCTTTTCGAAACGAATA 58.334 40.909 15.33 0.00 45.28 1.75
346 348 4.628333 CCTGCCTTTTCGAAACGAATACTA 59.372 41.667 15.33 0.00 45.28 1.82
347 349 5.445540 CCTGCCTTTTCGAAACGAATACTAC 60.446 44.000 15.33 0.00 45.28 2.73
348 350 5.232463 TGCCTTTTCGAAACGAATACTACT 58.768 37.500 15.33 0.00 45.28 2.57
349 351 6.389091 TGCCTTTTCGAAACGAATACTACTA 58.611 36.000 15.33 0.00 45.28 1.82
350 352 7.037438 TGCCTTTTCGAAACGAATACTACTAT 58.963 34.615 15.33 0.00 45.28 2.12
351 353 8.190122 TGCCTTTTCGAAACGAATACTACTATA 58.810 33.333 15.33 0.00 45.28 1.31
352 354 8.475359 GCCTTTTCGAAACGAATACTACTATAC 58.525 37.037 15.33 0.00 45.28 1.47
353 355 9.727627 CCTTTTCGAAACGAATACTACTATACT 57.272 33.333 15.33 0.00 45.28 2.12
361 363 9.558396 AAACGAATACTACTATACTCTAGCTGT 57.442 33.333 0.00 0.00 0.00 4.40
362 364 9.558396 AACGAATACTACTATACTCTAGCTGTT 57.442 33.333 0.00 0.00 0.00 3.16
369 371 8.266473 ACTACTATACTCTAGCTGTTACAGTGT 58.734 37.037 14.23 0.00 33.43 3.55
370 372 9.761504 CTACTATACTCTAGCTGTTACAGTGTA 57.238 37.037 14.23 0.00 33.43 2.90
373 375 9.496873 CTATACTCTAGCTGTTACAGTGTATCT 57.503 37.037 14.23 4.61 33.43 1.98
388 390 6.492254 CAGTGTATCTGTGTACGCTATACAA 58.508 40.000 24.25 13.51 41.97 2.41
389 391 7.139392 CAGTGTATCTGTGTACGCTATACAAT 58.861 38.462 24.25 22.13 41.97 2.71
390 392 7.113544 CAGTGTATCTGTGTACGCTATACAATG 59.886 40.741 27.86 27.86 41.97 2.82
391 393 6.916387 GTGTATCTGTGTACGCTATACAATGT 59.084 38.462 24.25 0.00 35.46 2.71
392 394 7.434307 GTGTATCTGTGTACGCTATACAATGTT 59.566 37.037 24.25 0.39 35.46 2.71
393 395 7.977293 TGTATCTGTGTACGCTATACAATGTTT 59.023 33.333 22.14 0.00 31.83 2.83
394 396 7.843490 ATCTGTGTACGCTATACAATGTTTT 57.157 32.000 8.10 0.00 29.24 2.43
395 397 7.661127 TCTGTGTACGCTATACAATGTTTTT 57.339 32.000 8.10 0.00 29.24 1.94
415 417 4.981806 TTTTTCCGCAAAGCTATGCTAT 57.018 36.364 0.00 0.00 44.21 2.97
417 419 5.418310 TTTTCCGCAAAGCTATGCTATAC 57.582 39.130 0.00 0.00 44.21 1.47
418 420 3.744238 TCCGCAAAGCTATGCTATACA 57.256 42.857 0.00 0.00 44.21 2.29
419 421 4.066646 TCCGCAAAGCTATGCTATACAA 57.933 40.909 0.00 0.00 44.21 2.41
420 422 4.641396 TCCGCAAAGCTATGCTATACAAT 58.359 39.130 0.00 0.00 44.21 2.71
421 423 4.452114 TCCGCAAAGCTATGCTATACAATG 59.548 41.667 0.00 0.00 44.21 2.82
422 424 4.214119 CCGCAAAGCTATGCTATACAATGT 59.786 41.667 0.00 0.00 44.21 2.71
423 425 5.408299 CCGCAAAGCTATGCTATACAATGTA 59.592 40.000 0.00 0.00 44.21 2.29
424 426 6.092670 CCGCAAAGCTATGCTATACAATGTAT 59.907 38.462 10.98 10.98 44.21 2.29
425 427 7.361201 CCGCAAAGCTATGCTATACAATGTATT 60.361 37.037 11.47 0.00 44.21 1.89
426 428 7.689812 CGCAAAGCTATGCTATACAATGTATTC 59.310 37.037 11.47 5.02 44.21 1.75
427 429 8.506437 GCAAAGCTATGCTATACAATGTATTCA 58.494 33.333 11.47 10.20 43.06 2.57
428 430 9.817365 CAAAGCTATGCTATACAATGTATTCAC 57.183 33.333 11.47 2.62 38.25 3.18
429 431 8.553459 AAGCTATGCTATACAATGTATTCACC 57.447 34.615 11.47 3.77 38.25 4.02
430 432 7.106239 AGCTATGCTATACAATGTATTCACCC 58.894 38.462 11.47 3.49 36.99 4.61
431 433 6.316390 GCTATGCTATACAATGTATTCACCCC 59.684 42.308 11.47 0.16 0.00 4.95
432 434 5.904984 TGCTATACAATGTATTCACCCCT 57.095 39.130 11.47 0.00 0.00 4.79
433 435 7.568128 ATGCTATACAATGTATTCACCCCTA 57.432 36.000 11.47 0.00 0.00 3.53
434 436 7.568128 TGCTATACAATGTATTCACCCCTAT 57.432 36.000 11.47 0.00 0.00 2.57
435 437 8.673456 TGCTATACAATGTATTCACCCCTATA 57.327 34.615 11.47 0.00 0.00 1.31
436 438 8.537016 TGCTATACAATGTATTCACCCCTATAC 58.463 37.037 11.47 0.00 0.00 1.47
437 439 8.537016 GCTATACAATGTATTCACCCCTATACA 58.463 37.037 11.47 0.00 40.42 2.29
440 442 6.964464 ACAATGTATTCACCCCTATACAACA 58.036 36.000 0.00 0.00 39.78 3.33
441 443 7.054124 ACAATGTATTCACCCCTATACAACAG 58.946 38.462 0.00 0.00 39.78 3.16
442 444 5.031066 TGTATTCACCCCTATACAACAGC 57.969 43.478 0.00 0.00 35.06 4.40
443 445 3.577805 ATTCACCCCTATACAACAGCC 57.422 47.619 0.00 0.00 0.00 4.85
444 446 0.828022 TCACCCCTATACAACAGCCG 59.172 55.000 0.00 0.00 0.00 5.52
445 447 0.539986 CACCCCTATACAACAGCCGT 59.460 55.000 0.00 0.00 0.00 5.68
446 448 1.065709 CACCCCTATACAACAGCCGTT 60.066 52.381 0.00 0.00 35.01 4.44
447 449 1.631898 ACCCCTATACAACAGCCGTTT 59.368 47.619 0.00 0.00 31.13 3.60
448 450 2.040679 ACCCCTATACAACAGCCGTTTT 59.959 45.455 0.00 0.00 31.13 2.43
449 451 3.263937 ACCCCTATACAACAGCCGTTTTA 59.736 43.478 0.00 0.00 31.13 1.52
450 452 4.263418 ACCCCTATACAACAGCCGTTTTAA 60.263 41.667 0.00 0.00 31.13 1.52
451 453 4.095334 CCCCTATACAACAGCCGTTTTAAC 59.905 45.833 0.00 0.00 31.13 2.01
452 454 4.939439 CCCTATACAACAGCCGTTTTAACT 59.061 41.667 0.00 0.00 31.13 2.24
453 455 5.413523 CCCTATACAACAGCCGTTTTAACTT 59.586 40.000 0.00 0.00 31.13 2.66
454 456 6.311723 CCTATACAACAGCCGTTTTAACTTG 58.688 40.000 0.00 0.00 31.13 3.16
455 457 3.430333 ACAACAGCCGTTTTAACTTGG 57.570 42.857 0.00 0.00 31.13 3.61
459 461 3.969995 GCCGTTTTAACTTGGCCAA 57.030 47.368 19.25 19.25 41.70 4.52
460 462 2.226602 GCCGTTTTAACTTGGCCAAA 57.773 45.000 20.91 1.03 41.70 3.28
461 463 2.552031 GCCGTTTTAACTTGGCCAAAA 58.448 42.857 20.91 8.43 41.70 2.44
462 464 2.937149 GCCGTTTTAACTTGGCCAAAAA 59.063 40.909 20.91 14.43 41.70 1.94
547 551 2.964464 TGGCACAATGAAACTGAATGGT 59.036 40.909 0.00 0.00 31.92 3.55
612 629 6.369059 AGTTGTGACTGACAAATCAAAGAG 57.631 37.500 0.00 0.00 46.30 2.85
634 651 1.023513 GTGGCATGGAGTGAGTGAGC 61.024 60.000 0.00 0.00 0.00 4.26
655 672 0.231534 CGTCATGCATGATCTCACGC 59.768 55.000 30.89 15.66 39.30 5.34
687 704 3.497332 AGGCACCTTCCTTTTTACCTTC 58.503 45.455 0.00 0.00 30.82 3.46
688 705 3.140332 AGGCACCTTCCTTTTTACCTTCT 59.860 43.478 0.00 0.00 30.82 2.85
689 706 3.895656 GGCACCTTCCTTTTTACCTTCTT 59.104 43.478 0.00 0.00 0.00 2.52
690 707 4.022242 GGCACCTTCCTTTTTACCTTCTTC 60.022 45.833 0.00 0.00 0.00 2.87
722 739 6.142320 GCGACAATTTTTACCTTCAACTTCAG 59.858 38.462 0.00 0.00 0.00 3.02
723 740 7.193595 CGACAATTTTTACCTTCAACTTCAGT 58.806 34.615 0.00 0.00 0.00 3.41
736 756 4.020218 TCAACTTCAGTAAGCAGGCAGTAT 60.020 41.667 0.00 0.00 36.05 2.12
753 773 4.100529 CAGTATTAGTAACCGGACACGTG 58.899 47.826 15.48 15.48 38.78 4.49
769 794 2.036733 CACGTGGTACCCAAGAAGAGAA 59.963 50.000 10.07 0.00 36.54 2.87
791 816 6.211584 AGAACACAGCTCCTATCTTCAACTTA 59.788 38.462 0.00 0.00 0.00 2.24
792 817 6.360370 ACACAGCTCCTATCTTCAACTTAA 57.640 37.500 0.00 0.00 0.00 1.85
793 818 6.402222 ACACAGCTCCTATCTTCAACTTAAG 58.598 40.000 0.00 0.00 0.00 1.85
794 819 6.014156 ACACAGCTCCTATCTTCAACTTAAGT 60.014 38.462 1.12 1.12 0.00 2.24
795 820 7.178628 ACACAGCTCCTATCTTCAACTTAAGTA 59.821 37.037 8.92 0.00 0.00 2.24
796 821 8.035394 CACAGCTCCTATCTTCAACTTAAGTAA 58.965 37.037 8.92 0.00 0.00 2.24
797 822 8.254508 ACAGCTCCTATCTTCAACTTAAGTAAG 58.745 37.037 8.92 9.97 39.18 2.34
798 823 7.223777 CAGCTCCTATCTTCAACTTAAGTAAGC 59.776 40.741 8.92 5.68 36.79 3.09
799 824 7.042335 GCTCCTATCTTCAACTTAAGTAAGCA 58.958 38.462 8.92 1.50 36.79 3.91
800 825 7.010645 GCTCCTATCTTCAACTTAAGTAAGCAC 59.989 40.741 8.92 0.00 36.79 4.40
801 826 7.328737 TCCTATCTTCAACTTAAGTAAGCACC 58.671 38.462 8.92 0.00 36.79 5.01
802 827 7.038587 TCCTATCTTCAACTTAAGTAAGCACCA 60.039 37.037 8.92 0.00 36.79 4.17
803 828 7.278868 CCTATCTTCAACTTAAGTAAGCACCAG 59.721 40.741 8.92 2.55 36.79 4.00
804 829 5.925509 TCTTCAACTTAAGTAAGCACCAGT 58.074 37.500 8.92 0.00 36.79 4.00
805 830 7.058023 TCTTCAACTTAAGTAAGCACCAGTA 57.942 36.000 8.92 0.00 36.79 2.74
806 831 6.927381 TCTTCAACTTAAGTAAGCACCAGTAC 59.073 38.462 8.92 0.00 36.79 2.73
807 832 6.415206 TCAACTTAAGTAAGCACCAGTACT 57.585 37.500 8.92 0.00 36.79 2.73
808 833 7.528996 TCAACTTAAGTAAGCACCAGTACTA 57.471 36.000 8.92 0.00 36.79 1.82
809 834 7.373493 TCAACTTAAGTAAGCACCAGTACTAC 58.627 38.462 8.92 0.00 36.79 2.73
810 835 7.232127 TCAACTTAAGTAAGCACCAGTACTACT 59.768 37.037 8.92 0.00 36.79 2.57
811 836 7.536159 ACTTAAGTAAGCACCAGTACTACTT 57.464 36.000 6.26 9.31 36.79 2.24
819 844 9.178427 GTAAGCACCAGTACTACTTTATTATCG 57.822 37.037 0.00 0.00 0.00 2.92
866 891 4.563140 ACACGTTGGTACCCAAGATTAT 57.437 40.909 10.07 0.00 44.82 1.28
891 916 2.750141 TATACTGCCGTCTTCCCTCT 57.250 50.000 0.00 0.00 0.00 3.69
902 927 3.436243 GTCTTCCCTCTTCTCTCCTTCA 58.564 50.000 0.00 0.00 0.00 3.02
905 930 4.016666 TCTTCCCTCTTCTCTCCTTCATCT 60.017 45.833 0.00 0.00 0.00 2.90
906 931 4.344938 TCCCTCTTCTCTCCTTCATCTT 57.655 45.455 0.00 0.00 0.00 2.40
907 932 4.285863 TCCCTCTTCTCTCCTTCATCTTC 58.714 47.826 0.00 0.00 0.00 2.87
926 951 2.188817 TCCTCTCCAAGTTTAGCTCCC 58.811 52.381 0.00 0.00 0.00 4.30
948 973 5.521068 CCCCTTACATATAGACCTCCATCCT 60.521 48.000 0.00 0.00 0.00 3.24
989 1014 3.558931 TGTCACAGTGACCAAGAACAT 57.441 42.857 27.51 0.00 46.40 2.71
1173 1219 3.706373 GAGGCCCACAAGCTCCGA 61.706 66.667 0.00 0.00 0.00 4.55
1206 1252 2.121506 TGGGGCCTCTTCCTGGTT 60.122 61.111 3.07 0.00 0.00 3.67
1248 1586 8.579863 AGCTAAAACTATTCAACTTTTGCTGAT 58.420 29.630 2.39 0.00 38.06 2.90
1419 1776 4.220602 GGCTATGGAAATGACAAAGTGGTT 59.779 41.667 0.00 0.00 0.00 3.67
1421 1778 6.404734 GGCTATGGAAATGACAAAGTGGTTAG 60.405 42.308 0.00 0.00 0.00 2.34
1482 1839 1.261480 TGAGAGTGGAGCCAGAAGAC 58.739 55.000 0.00 0.00 0.00 3.01
1515 1872 2.776526 AAGTGGCCCACTCACCCA 60.777 61.111 18.56 0.00 44.62 4.51
1516 1873 3.133365 AAGTGGCCCACTCACCCAC 62.133 63.158 18.56 0.94 44.62 4.61
1561 1923 4.020128 ACTCCCTTACCTTCATTCAGTGTC 60.020 45.833 0.00 0.00 0.00 3.67
1576 1938 6.525121 TTCAGTGTCGTTTCACATTTCTAG 57.475 37.500 9.70 0.00 40.37 2.43
1583 1945 5.575995 GTCGTTTCACATTTCTAGTACTCCC 59.424 44.000 0.00 0.00 0.00 4.30
1584 1946 5.479375 TCGTTTCACATTTCTAGTACTCCCT 59.521 40.000 0.00 0.00 0.00 4.20
1586 1948 6.750963 CGTTTCACATTTCTAGTACTCCCTAC 59.249 42.308 0.00 0.00 0.00 3.18
1634 1996 5.658468 TGTGAGCTTCTCTTGATGATGTAG 58.342 41.667 0.00 0.00 0.00 2.74
1636 1998 5.978919 GTGAGCTTCTCTTGATGATGTAGAG 59.021 44.000 0.00 0.00 37.37 2.43
1638 2000 6.830838 TGAGCTTCTCTTGATGATGTAGAGTA 59.169 38.462 0.00 0.00 37.33 2.59
1641 2003 7.341769 AGCTTCTCTTGATGATGTAGAGTAGTT 59.658 37.037 0.00 0.00 36.43 2.24
1644 2006 9.645059 TTCTCTTGATGATGTAGAGTAGTTTTG 57.355 33.333 0.00 0.00 37.33 2.44
1657 2019 5.924825 AGAGTAGTTTTGTAGTTACTTGCGG 59.075 40.000 0.00 0.00 0.00 5.69
1752 2187 9.736414 AATGGATATTCAGAGTGAATTCATAGG 57.264 33.333 12.12 2.47 44.03 2.57
1763 2198 9.829507 AGAGTGAATTCATAGGAACTGAATAAG 57.170 33.333 12.12 0.00 41.33 1.73
1873 2316 9.716556 AGAACCAAGAGAATAAGAGACCTTATA 57.283 33.333 0.00 0.00 42.97 0.98
2438 2929 6.823497 CAAGATATGGAAAATTCAAGGCCAT 58.177 36.000 5.01 0.00 41.81 4.40
2474 2971 4.124238 TCTTTCGACTGAACATTTCCGTT 58.876 39.130 0.00 0.00 32.71 4.44
2479 2976 7.180866 TTTCGACTGAACATTTCCGTTAAGGA 61.181 38.462 0.00 0.00 39.80 3.36
2504 3001 2.234908 AGATTCACCGAGACCCTGAAAG 59.765 50.000 0.00 0.00 0.00 2.62
2508 3005 1.067071 CACCGAGACCCTGAAAGTACC 60.067 57.143 0.00 0.00 0.00 3.34
2516 3013 4.351111 AGACCCTGAAAGTACCAGTTCAAT 59.649 41.667 5.92 0.00 33.52 2.57
2538 3046 9.727859 TCAATGTATTAACTAGTTGGCTTGTAA 57.272 29.630 18.56 2.82 30.84 2.41
2551 3059 6.823689 AGTTGGCTTGTAATAGTGATTACCTG 59.176 38.462 5.59 1.02 44.71 4.00
2574 3082 8.954350 CCTGCATATGGAGAATAATTAAAGAGG 58.046 37.037 24.39 0.64 35.31 3.69
2604 3112 5.365605 TCTCTTCTGTGAGTGGGTTTTCTAA 59.634 40.000 0.00 0.00 35.68 2.10
2640 3155 3.620821 GCCTTTCTTAGCAGTGATCAGTC 59.379 47.826 0.00 0.00 0.00 3.51
2662 3177 8.678593 AGTCGAAGATTGAGTCATATACTACA 57.321 34.615 0.00 0.00 37.47 2.74
2663 3178 9.290988 AGTCGAAGATTGAGTCATATACTACAT 57.709 33.333 0.00 0.00 37.47 2.29
2664 3179 9.900710 GTCGAAGATTGAGTCATATACTACATT 57.099 33.333 0.00 0.00 37.47 2.71
2695 3210 9.705290 TTATATTGGGAAAGACAAAGCTTTTTC 57.295 29.630 16.01 16.01 38.16 2.29
2696 3211 5.413309 TTGGGAAAGACAAAGCTTTTTCA 57.587 34.783 23.53 3.56 38.16 2.69
2697 3212 5.413309 TGGGAAAGACAAAGCTTTTTCAA 57.587 34.783 23.53 9.15 38.16 2.69
2698 3213 5.418676 TGGGAAAGACAAAGCTTTTTCAAG 58.581 37.500 23.53 9.57 38.16 3.02
2699 3214 5.186797 TGGGAAAGACAAAGCTTTTTCAAGA 59.813 36.000 23.53 5.48 38.16 3.02
2700 3215 5.520288 GGGAAAGACAAAGCTTTTTCAAGAC 59.480 40.000 23.53 12.64 38.16 3.01
2701 3216 5.230097 GGAAAGACAAAGCTTTTTCAAGACG 59.770 40.000 23.53 7.58 38.16 4.18
2702 3217 3.695816 AGACAAAGCTTTTTCAAGACGC 58.304 40.909 23.53 0.00 30.57 5.19
2703 3218 3.128589 AGACAAAGCTTTTTCAAGACGCA 59.871 39.130 23.53 0.00 30.57 5.24
2704 3219 3.438360 ACAAAGCTTTTTCAAGACGCAG 58.562 40.909 9.53 0.00 30.57 5.18
2705 3220 3.128589 ACAAAGCTTTTTCAAGACGCAGA 59.871 39.130 9.53 0.00 30.57 4.26
2706 3221 4.104776 CAAAGCTTTTTCAAGACGCAGAA 58.895 39.130 9.53 0.00 30.57 3.02
2707 3222 4.370364 AAGCTTTTTCAAGACGCAGAAA 57.630 36.364 0.00 0.00 30.57 2.52
2708 3223 4.574599 AGCTTTTTCAAGACGCAGAAAT 57.425 36.364 0.00 0.00 34.10 2.17
2709 3224 4.936891 AGCTTTTTCAAGACGCAGAAATT 58.063 34.783 0.00 0.00 34.10 1.82
2710 3225 5.351458 AGCTTTTTCAAGACGCAGAAATTT 58.649 33.333 0.00 0.00 34.10 1.82
2711 3226 5.812127 AGCTTTTTCAAGACGCAGAAATTTT 59.188 32.000 0.00 0.00 34.10 1.82
2712 3227 6.313658 AGCTTTTTCAAGACGCAGAAATTTTT 59.686 30.769 0.00 0.00 34.10 1.94
2713 3228 7.491048 AGCTTTTTCAAGACGCAGAAATTTTTA 59.509 29.630 0.00 0.00 34.10 1.52
2714 3229 8.275632 GCTTTTTCAAGACGCAGAAATTTTTAT 58.724 29.630 0.00 0.00 34.10 1.40
2715 3230 9.783425 CTTTTTCAAGACGCAGAAATTTTTATC 57.217 29.630 0.00 0.00 34.10 1.75
2716 3231 8.864069 TTTTCAAGACGCAGAAATTTTTATCA 57.136 26.923 0.00 0.00 34.10 2.15
2717 3232 7.851822 TTCAAGACGCAGAAATTTTTATCAC 57.148 32.000 0.00 0.00 0.00 3.06
2718 3233 7.202016 TCAAGACGCAGAAATTTTTATCACT 57.798 32.000 0.00 0.00 0.00 3.41
2719 3234 7.298122 TCAAGACGCAGAAATTTTTATCACTC 58.702 34.615 0.00 0.00 0.00 3.51
2720 3235 6.183309 AGACGCAGAAATTTTTATCACTCC 57.817 37.500 0.00 0.00 0.00 3.85
2726 3241 6.153510 GCAGAAATTTTTATCACTCCTCCCTT 59.846 38.462 0.00 0.00 0.00 3.95
2808 3325 3.075005 TCCCGCCTCCTTTCTCCG 61.075 66.667 0.00 0.00 0.00 4.63
2844 3361 2.282674 CCTCCAGCAGGCAAAGCA 60.283 61.111 0.00 0.00 34.56 3.91
3078 3595 1.231296 CGATCTGGATCCTCGCGAGA 61.231 60.000 36.59 22.30 34.40 4.04
3081 3598 0.179018 TCTGGATCCTCGCGAGATGA 60.179 55.000 36.59 25.55 40.84 2.92
3083 3600 0.179018 TGGATCCTCGCGAGATGAGA 60.179 55.000 36.59 24.46 38.15 3.27
3149 3706 4.903010 GTGTCGTGGTGGTGCCGT 62.903 66.667 0.00 0.00 41.21 5.68
3152 3709 3.542676 TCGTGGTGGTGCCGTCTT 61.543 61.111 0.00 0.00 41.21 3.01
3192 3750 2.725312 GGATCTGGCAGCTCGTCCA 61.725 63.158 10.34 0.00 0.00 4.02
3248 3806 1.762957 CTCGGGATTCCTCTTTGGCTA 59.237 52.381 2.01 0.00 35.26 3.93
3392 3952 2.046892 CGGCCAGAGTGAGGTTGG 60.047 66.667 2.24 0.00 35.06 3.77
3408 3968 3.721706 GGTCTCAGCAGGGGTGGG 61.722 72.222 0.00 0.00 32.15 4.61
3420 3980 3.261677 GGTGGGGGTTGGTAGGCA 61.262 66.667 0.00 0.00 0.00 4.75
3423 3983 1.161355 TGGGGGTTGGTAGGCAGTA 59.839 57.895 0.00 0.00 0.00 2.74
3432 3992 0.969409 GGTAGGCAGTAGTCGGTGGT 60.969 60.000 0.00 0.00 0.00 4.16
3433 3993 1.683011 GGTAGGCAGTAGTCGGTGGTA 60.683 57.143 0.00 0.00 0.00 3.25
3440 4000 0.893447 GTAGTCGGTGGTAGCTGGTT 59.107 55.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.385390 CTCTGTTTTGTGGTGGTGCC 59.615 55.000 0.00 0.00 37.90 5.01
32 34 4.672587 ATCGGCTACATACATGTCTTGT 57.327 40.909 16.05 16.05 41.97 3.16
66 68 5.070446 TCTCTTCAAGCAAGTAGGTCAAGAA 59.930 40.000 0.00 0.00 33.27 2.52
70 72 4.955811 TTCTCTTCAAGCAAGTAGGTCA 57.044 40.909 0.00 0.00 33.27 4.02
74 76 6.998968 ATTGGATTCTCTTCAAGCAAGTAG 57.001 37.500 0.00 0.00 33.27 2.57
77 79 6.263516 TGAATTGGATTCTCTTCAAGCAAG 57.736 37.500 2.74 0.00 39.96 4.01
78 80 6.434965 TCATGAATTGGATTCTCTTCAAGCAA 59.565 34.615 0.00 0.00 39.96 3.91
79 81 5.947566 TCATGAATTGGATTCTCTTCAAGCA 59.052 36.000 0.00 0.00 39.96 3.91
80 82 6.446781 TCATGAATTGGATTCTCTTCAAGC 57.553 37.500 0.00 0.00 39.96 4.01
122 124 9.081997 CACTCAATAATCTTCAAGTAGTCACTC 57.918 37.037 0.00 0.00 32.29 3.51
165 167 4.162320 TGCCTAACCTAAGATGGTCTGAAG 59.838 45.833 0.00 0.00 39.83 3.02
167 169 3.719871 TGCCTAACCTAAGATGGTCTGA 58.280 45.455 0.00 0.00 39.83 3.27
183 185 5.185442 TCACAAATTCAGAATGCAATGCCTA 59.815 36.000 1.53 0.00 34.76 3.93
201 203 5.358922 CCCTTTTCAGCTGAAATTCACAAA 58.641 37.500 35.66 21.15 42.83 2.83
217 219 3.248363 GCTGATTGTTGTTTGCCCTTTTC 59.752 43.478 0.00 0.00 0.00 2.29
228 230 1.315257 GCGGGGATGCTGATTGTTGT 61.315 55.000 0.00 0.00 0.00 3.32
237 239 1.344953 TATTCAGTGGCGGGGATGCT 61.345 55.000 0.00 0.00 34.52 3.79
244 246 1.293924 CAGAGCTTATTCAGTGGCGG 58.706 55.000 0.00 0.00 0.00 6.13
250 252 6.728200 TGTTTGTCAAACAGAGCTTATTCAG 58.272 36.000 24.05 0.00 45.79 3.02
281 283 8.102676 TCATTATTTCAGATGAAGTCCTGACAA 58.897 33.333 0.00 0.00 38.95 3.18
285 287 7.361127 GCATCATTATTTCAGATGAAGTCCTG 58.639 38.462 5.88 0.00 41.18 3.86
286 288 6.489361 GGCATCATTATTTCAGATGAAGTCCT 59.511 38.462 5.88 0.00 41.18 3.85
287 289 6.489361 AGGCATCATTATTTCAGATGAAGTCC 59.511 38.462 5.88 0.00 41.18 3.85
288 290 7.361127 CAGGCATCATTATTTCAGATGAAGTC 58.639 38.462 5.88 0.00 41.18 3.01
289 291 6.264744 CCAGGCATCATTATTTCAGATGAAGT 59.735 38.462 5.88 0.00 41.18 3.01
290 292 6.489022 TCCAGGCATCATTATTTCAGATGAAG 59.511 38.462 5.88 0.00 41.18 3.02
291 293 6.263842 GTCCAGGCATCATTATTTCAGATGAA 59.736 38.462 5.88 0.00 41.18 2.57
302 304 3.181440 GGAAGGATGTCCAGGCATCATTA 60.181 47.826 18.02 0.00 45.86 1.90
304 306 1.144503 GGAAGGATGTCCAGGCATCAT 59.855 52.381 19.55 13.15 45.11 2.45
305 307 0.548031 GGAAGGATGTCCAGGCATCA 59.452 55.000 19.55 4.33 45.11 3.07
306 308 0.842635 AGGAAGGATGTCCAGGCATC 59.157 55.000 12.95 12.95 43.22 3.91
307 309 0.549950 CAGGAAGGATGTCCAGGCAT 59.450 55.000 1.30 0.00 40.48 4.40
308 310 1.993653 CAGGAAGGATGTCCAGGCA 59.006 57.895 1.30 0.00 40.48 4.75
309 311 1.452833 GCAGGAAGGATGTCCAGGC 60.453 63.158 1.30 0.00 40.48 4.85
310 312 1.225704 GGCAGGAAGGATGTCCAGG 59.774 63.158 1.30 0.00 40.48 4.45
312 314 1.075601 AAAGGCAGGAAGGATGTCCA 58.924 50.000 1.30 0.00 40.48 4.02
313 315 2.095461 GAAAAGGCAGGAAGGATGTCC 58.905 52.381 0.00 0.00 38.03 4.02
314 316 1.740025 CGAAAAGGCAGGAAGGATGTC 59.260 52.381 0.00 0.00 0.00 3.06
315 317 1.351017 TCGAAAAGGCAGGAAGGATGT 59.649 47.619 0.00 0.00 0.00 3.06
316 318 2.113860 TCGAAAAGGCAGGAAGGATG 57.886 50.000 0.00 0.00 0.00 3.51
317 319 2.820197 GTTTCGAAAAGGCAGGAAGGAT 59.180 45.455 13.10 0.00 0.00 3.24
318 320 2.227194 GTTTCGAAAAGGCAGGAAGGA 58.773 47.619 13.10 0.00 0.00 3.36
319 321 1.069227 CGTTTCGAAAAGGCAGGAAGG 60.069 52.381 13.10 0.00 0.00 3.46
321 323 1.956297 TCGTTTCGAAAAGGCAGGAA 58.044 45.000 21.08 0.84 31.06 3.36
322 324 1.956297 TTCGTTTCGAAAAGGCAGGA 58.044 45.000 21.08 4.74 43.00 3.86
332 334 8.920665 GCTAGAGTATAGTAGTATTCGTTTCGA 58.079 37.037 0.00 0.00 0.00 3.71
333 335 8.924691 AGCTAGAGTATAGTAGTATTCGTTTCG 58.075 37.037 0.00 0.00 0.00 3.46
336 338 9.558396 AACAGCTAGAGTATAGTAGTATTCGTT 57.442 33.333 0.00 0.00 0.00 3.85
342 344 9.761504 CACTGTAACAGCTAGAGTATAGTAGTA 57.238 37.037 0.00 0.00 32.46 1.82
343 345 8.266473 ACACTGTAACAGCTAGAGTATAGTAGT 58.734 37.037 0.00 0.00 32.46 2.73
346 348 9.275398 GATACACTGTAACAGCTAGAGTATAGT 57.725 37.037 0.00 0.00 32.46 2.12
347 349 9.496873 AGATACACTGTAACAGCTAGAGTATAG 57.503 37.037 0.00 0.00 32.46 1.31
348 350 9.274206 CAGATACACTGTAACAGCTAGAGTATA 57.726 37.037 0.00 0.00 41.30 1.47
349 351 8.160521 CAGATACACTGTAACAGCTAGAGTAT 57.839 38.462 0.00 3.95 41.30 2.12
350 352 7.555306 CAGATACACTGTAACAGCTAGAGTA 57.445 40.000 0.00 0.00 41.30 2.59
351 353 6.443934 CAGATACACTGTAACAGCTAGAGT 57.556 41.667 0.00 0.00 41.30 3.24
366 368 6.916387 ACATTGTATAGCGTACACAGATACAC 59.084 38.462 7.70 0.00 33.80 2.90
367 369 7.034685 ACATTGTATAGCGTACACAGATACA 57.965 36.000 4.74 5.15 32.55 2.29
369 371 8.936070 AAAACATTGTATAGCGTACACAGATA 57.064 30.769 4.74 0.00 0.00 1.98
370 372 7.843490 AAAACATTGTATAGCGTACACAGAT 57.157 32.000 4.74 0.00 0.00 2.90
401 403 8.506437 TGAATACATTGTATAGCATAGCTTTGC 58.494 33.333 20.07 20.07 40.44 3.68
402 404 9.817365 GTGAATACATTGTATAGCATAGCTTTG 57.183 33.333 9.67 0.00 40.44 2.77
403 405 9.003658 GGTGAATACATTGTATAGCATAGCTTT 57.996 33.333 9.67 0.00 40.44 3.51
404 406 7.607991 GGGTGAATACATTGTATAGCATAGCTT 59.392 37.037 9.67 0.00 40.44 3.74
405 407 7.106239 GGGTGAATACATTGTATAGCATAGCT 58.894 38.462 9.67 0.00 43.41 3.32
406 408 6.316390 GGGGTGAATACATTGTATAGCATAGC 59.684 42.308 9.67 5.06 0.00 2.97
407 409 7.624549 AGGGGTGAATACATTGTATAGCATAG 58.375 38.462 9.67 0.00 0.00 2.23
408 410 7.568128 AGGGGTGAATACATTGTATAGCATA 57.432 36.000 9.67 0.00 0.00 3.14
409 411 6.454223 AGGGGTGAATACATTGTATAGCAT 57.546 37.500 9.67 0.00 0.00 3.79
410 412 5.904984 AGGGGTGAATACATTGTATAGCA 57.095 39.130 9.67 8.54 0.00 3.49
411 413 8.537016 TGTATAGGGGTGAATACATTGTATAGC 58.463 37.037 9.67 5.22 0.00 2.97
414 416 8.719596 TGTTGTATAGGGGTGAATACATTGTAT 58.280 33.333 3.40 3.40 30.71 2.29
415 417 8.091952 TGTTGTATAGGGGTGAATACATTGTA 57.908 34.615 0.00 0.00 30.71 2.41
416 418 6.964464 TGTTGTATAGGGGTGAATACATTGT 58.036 36.000 0.00 0.00 30.71 2.71
417 419 6.017109 GCTGTTGTATAGGGGTGAATACATTG 60.017 42.308 0.00 0.00 30.71 2.82
418 420 6.062095 GCTGTTGTATAGGGGTGAATACATT 58.938 40.000 0.00 0.00 30.71 2.71
419 421 5.456186 GGCTGTTGTATAGGGGTGAATACAT 60.456 44.000 0.00 0.00 30.71 2.29
420 422 4.141574 GGCTGTTGTATAGGGGTGAATACA 60.142 45.833 0.00 0.00 0.00 2.29
421 423 4.386711 GGCTGTTGTATAGGGGTGAATAC 58.613 47.826 0.00 0.00 0.00 1.89
422 424 3.070446 CGGCTGTTGTATAGGGGTGAATA 59.930 47.826 0.00 0.00 0.00 1.75
423 425 2.158813 CGGCTGTTGTATAGGGGTGAAT 60.159 50.000 0.00 0.00 0.00 2.57
424 426 1.208535 CGGCTGTTGTATAGGGGTGAA 59.791 52.381 0.00 0.00 0.00 3.18
425 427 0.828022 CGGCTGTTGTATAGGGGTGA 59.172 55.000 0.00 0.00 0.00 4.02
426 428 0.539986 ACGGCTGTTGTATAGGGGTG 59.460 55.000 0.00 0.00 0.00 4.61
427 429 1.282382 AACGGCTGTTGTATAGGGGT 58.718 50.000 10.90 0.00 36.81 4.95
428 430 2.413310 AAACGGCTGTTGTATAGGGG 57.587 50.000 12.68 0.00 38.62 4.79
429 431 4.939439 AGTTAAAACGGCTGTTGTATAGGG 59.061 41.667 12.68 0.00 38.62 3.53
430 432 6.311723 CAAGTTAAAACGGCTGTTGTATAGG 58.688 40.000 12.68 0.00 38.62 2.57
431 433 6.311723 CCAAGTTAAAACGGCTGTTGTATAG 58.688 40.000 12.68 1.48 38.62 1.31
432 434 5.335035 GCCAAGTTAAAACGGCTGTTGTATA 60.335 40.000 12.68 3.28 41.50 1.47
433 435 4.557895 GCCAAGTTAAAACGGCTGTTGTAT 60.558 41.667 12.68 4.30 41.50 2.29
434 436 3.243134 GCCAAGTTAAAACGGCTGTTGTA 60.243 43.478 12.68 8.12 41.50 2.41
435 437 2.480587 GCCAAGTTAAAACGGCTGTTGT 60.481 45.455 12.68 9.34 41.50 3.32
436 438 2.124122 GCCAAGTTAAAACGGCTGTTG 58.876 47.619 12.68 0.00 41.50 3.33
437 439 1.067974 GGCCAAGTTAAAACGGCTGTT 59.932 47.619 4.68 4.68 44.27 3.16
438 440 0.671796 GGCCAAGTTAAAACGGCTGT 59.328 50.000 0.00 0.00 44.27 4.40
439 441 0.671251 TGGCCAAGTTAAAACGGCTG 59.329 50.000 0.61 0.00 44.27 4.85
440 442 1.404843 TTGGCCAAGTTAAAACGGCT 58.595 45.000 16.05 0.00 44.27 5.52
441 443 2.226602 TTTGGCCAAGTTAAAACGGC 57.773 45.000 19.48 3.86 44.10 5.68
464 466 9.850198 AGTATCTACGGTTAGTCTCTCTTTATT 57.150 33.333 0.00 0.00 0.00 1.40
465 467 9.275398 CAGTATCTACGGTTAGTCTCTCTTTAT 57.725 37.037 0.00 0.00 0.00 1.40
466 468 7.226325 GCAGTATCTACGGTTAGTCTCTCTTTA 59.774 40.741 0.00 0.00 0.00 1.85
467 469 6.038492 GCAGTATCTACGGTTAGTCTCTCTTT 59.962 42.308 0.00 0.00 0.00 2.52
468 470 5.528320 GCAGTATCTACGGTTAGTCTCTCTT 59.472 44.000 0.00 0.00 0.00 2.85
469 471 5.058490 GCAGTATCTACGGTTAGTCTCTCT 58.942 45.833 0.00 0.00 0.00 3.10
470 472 4.213906 GGCAGTATCTACGGTTAGTCTCTC 59.786 50.000 0.00 0.00 0.00 3.20
471 473 4.136051 GGCAGTATCTACGGTTAGTCTCT 58.864 47.826 0.00 0.00 0.00 3.10
472 474 3.881688 TGGCAGTATCTACGGTTAGTCTC 59.118 47.826 0.00 0.00 0.00 3.36
473 475 3.631227 GTGGCAGTATCTACGGTTAGTCT 59.369 47.826 0.00 0.00 0.00 3.24
474 476 3.631227 AGTGGCAGTATCTACGGTTAGTC 59.369 47.826 0.00 0.00 0.00 2.59
475 477 3.380637 CAGTGGCAGTATCTACGGTTAGT 59.619 47.826 0.00 0.00 0.00 2.24
476 478 3.243434 CCAGTGGCAGTATCTACGGTTAG 60.243 52.174 0.00 0.00 0.00 2.34
477 479 2.691526 CCAGTGGCAGTATCTACGGTTA 59.308 50.000 0.00 0.00 0.00 2.85
478 480 1.480954 CCAGTGGCAGTATCTACGGTT 59.519 52.381 0.00 0.00 0.00 4.44
479 481 1.112113 CCAGTGGCAGTATCTACGGT 58.888 55.000 0.00 0.00 0.00 4.83
480 482 0.389391 CCCAGTGGCAGTATCTACGG 59.611 60.000 2.61 0.00 0.00 4.02
481 483 1.399714 TCCCAGTGGCAGTATCTACG 58.600 55.000 2.61 0.00 0.00 3.51
482 484 3.643792 AGAATCCCAGTGGCAGTATCTAC 59.356 47.826 2.61 0.00 0.00 2.59
547 551 4.235360 GTTGCGACTAAGCTAAGACTTGA 58.765 43.478 0.00 0.00 38.13 3.02
579 596 5.343249 TGTCAGTCACAACTCATATCATCG 58.657 41.667 0.00 0.00 31.71 3.84
612 629 0.392193 CACTCACTCCATGCCACTCC 60.392 60.000 0.00 0.00 0.00 3.85
634 651 0.231534 GTGAGATCATGCATGACGCG 59.768 55.000 30.92 3.53 46.97 6.01
655 672 2.369394 GAAGGTGCCTTCCCTACATTG 58.631 52.381 17.77 0.00 44.76 2.82
722 739 4.743644 CGGTTACTAATACTGCCTGCTTAC 59.256 45.833 0.00 0.00 0.00 2.34
723 740 4.202182 CCGGTTACTAATACTGCCTGCTTA 60.202 45.833 0.00 0.00 0.00 3.09
736 756 1.327303 ACCACGTGTCCGGTTACTAA 58.673 50.000 15.65 0.00 38.78 2.24
769 794 4.899352 AAGTTGAAGATAGGAGCTGTGT 57.101 40.909 0.00 0.00 0.00 3.72
793 818 9.178427 CGATAATAAAGTAGTACTGGTGCTTAC 57.822 37.037 5.39 0.00 0.00 2.34
794 819 9.123902 TCGATAATAAAGTAGTACTGGTGCTTA 57.876 33.333 5.39 0.00 0.00 3.09
795 820 8.004087 TCGATAATAAAGTAGTACTGGTGCTT 57.996 34.615 5.39 2.10 0.00 3.91
796 821 7.578310 TCGATAATAAAGTAGTACTGGTGCT 57.422 36.000 5.39 0.00 0.00 4.40
797 822 8.638685 TTTCGATAATAAAGTAGTACTGGTGC 57.361 34.615 5.39 0.00 0.00 5.01
866 891 6.952358 AGAGGGAAGACGGCAGTATATAATTA 59.048 38.462 0.00 0.00 0.00 1.40
885 910 4.285863 GAAGATGAAGGAGAGAAGAGGGA 58.714 47.826 0.00 0.00 0.00 4.20
891 916 4.264577 TGGAGAGGAAGATGAAGGAGAGAA 60.265 45.833 0.00 0.00 0.00 2.87
902 927 4.163268 GGAGCTAAACTTGGAGAGGAAGAT 59.837 45.833 0.00 0.00 0.00 2.40
905 930 2.572104 GGGAGCTAAACTTGGAGAGGAA 59.428 50.000 0.00 0.00 0.00 3.36
906 931 2.188817 GGGAGCTAAACTTGGAGAGGA 58.811 52.381 0.00 0.00 0.00 3.71
907 932 1.210722 GGGGAGCTAAACTTGGAGAGG 59.789 57.143 0.00 0.00 0.00 3.69
926 951 6.127591 CGAAGGATGGAGGTCTATATGTAAGG 60.128 46.154 0.00 0.00 0.00 2.69
948 973 1.219664 CTTGCCGTGGTATCCCGAA 59.780 57.895 0.00 0.00 0.00 4.30
989 1014 2.490148 CGCACCATCGAGGGAGCTA 61.490 63.158 30.46 0.00 43.89 3.32
1173 1219 1.208165 CCCAGGTTTGTAGGGCCTCT 61.208 60.000 10.74 0.00 35.44 3.69
1185 1231 2.211279 AGGAAGAGGCCCCAGGTT 59.789 61.111 0.00 0.00 0.00 3.50
1248 1586 3.068873 GGTTGGTGACCTGCATAAAAACA 59.931 43.478 2.11 0.00 45.55 2.83
1359 1713 1.246649 TGCCGTCGTCTACCAAGTTA 58.753 50.000 0.00 0.00 0.00 2.24
1366 1720 0.666577 AAGTGCTTGCCGTCGTCTAC 60.667 55.000 0.00 0.00 0.00 2.59
1419 1776 2.290393 CCCTGATCCTGGGGGCTA 59.710 66.667 11.86 0.00 38.71 3.93
1482 1839 2.095059 CCACTTGGCAAAATTCCTCTCG 60.095 50.000 0.00 0.00 0.00 4.04
1561 1923 5.721232 AGGGAGTACTAGAAATGTGAAACG 58.279 41.667 0.00 0.00 42.39 3.60
1576 1938 3.194116 TCATGTTGGAACGTAGGGAGTAC 59.806 47.826 0.00 0.00 0.00 2.73
1583 1945 3.813166 ACACCTTTCATGTTGGAACGTAG 59.187 43.478 0.00 0.00 0.00 3.51
1584 1946 3.811083 ACACCTTTCATGTTGGAACGTA 58.189 40.909 0.00 0.00 0.00 3.57
1586 1948 3.813166 AGTACACCTTTCATGTTGGAACG 59.187 43.478 0.00 0.00 0.00 3.95
1634 1996 5.693555 ACCGCAAGTAACTACAAAACTACTC 59.306 40.000 0.00 0.00 0.00 2.59
1636 1998 5.234972 ACACCGCAAGTAACTACAAAACTAC 59.765 40.000 0.00 0.00 0.00 2.73
1638 2000 4.193865 ACACCGCAAGTAACTACAAAACT 58.806 39.130 0.00 0.00 0.00 2.66
1641 2003 4.947645 ACTACACCGCAAGTAACTACAAA 58.052 39.130 0.00 0.00 0.00 2.83
1644 2006 5.234972 ACAAAACTACACCGCAAGTAACTAC 59.765 40.000 0.00 0.00 0.00 2.73
1646 2008 4.034742 CACAAAACTACACCGCAAGTAACT 59.965 41.667 0.00 0.00 0.00 2.24
1650 2012 2.634600 TCACAAAACTACACCGCAAGT 58.365 42.857 0.00 0.00 0.00 3.16
1728 2160 8.496534 TCCTATGAATTCACTCTGAATATCCA 57.503 34.615 11.07 0.00 45.57 3.41
1741 2173 9.973661 TTTCCTTATTCAGTTCCTATGAATTCA 57.026 29.630 11.26 11.26 43.20 2.57
1795 2230 7.450074 TGTACACAGAAACACTCCAGAATTAT 58.550 34.615 0.00 0.00 0.00 1.28
1822 2265 6.627243 TGATGCGTACTTAAGTAACACATCT 58.373 36.000 30.22 16.13 37.31 2.90
1829 2272 6.457355 TGGTTCTTGATGCGTACTTAAGTAA 58.543 36.000 16.82 2.47 31.52 2.24
1835 2278 3.997021 CTCTTGGTTCTTGATGCGTACTT 59.003 43.478 0.00 0.00 0.00 2.24
1873 2316 4.649692 AGATCTTGGCTATTGATCGCAAT 58.350 39.130 0.00 0.00 46.11 3.56
2229 2709 4.970662 ATTTGCATACAAGTCAGCGAAT 57.029 36.364 0.00 0.00 37.04 3.34
2321 2812 2.353208 CCCAGTGAAAGTCTCTCCTTCG 60.353 54.545 0.00 0.00 0.00 3.79
2385 2876 0.478072 TGTCATCCAGCAAACCAGGT 59.522 50.000 0.00 0.00 0.00 4.00
2424 2915 4.506758 CGAAATCCATGGCCTTGAATTTT 58.493 39.130 19.85 14.49 0.00 1.82
2438 2929 4.577283 AGTCGAAAGAAAAACCGAAATCCA 59.423 37.500 0.00 0.00 45.01 3.41
2474 2971 4.159879 GGTCTCGGTGAATCTCTTTCCTTA 59.840 45.833 0.00 0.00 33.04 2.69
2479 2976 2.234908 CAGGGTCTCGGTGAATCTCTTT 59.765 50.000 0.00 0.00 0.00 2.52
2490 2987 1.204941 CTGGTACTTTCAGGGTCTCGG 59.795 57.143 0.00 0.00 0.00 4.63
2508 3005 8.268850 AGCCAACTAGTTAATACATTGAACTG 57.731 34.615 8.04 0.00 35.17 3.16
2538 3046 7.559335 TTCTCCATATGCAGGTAATCACTAT 57.441 36.000 0.00 0.00 0.00 2.12
2551 3059 8.734386 CCACCTCTTTAATTATTCTCCATATGC 58.266 37.037 0.00 0.00 0.00 3.14
2574 3082 3.134458 CCACTCACAGAAGAGAAACCAC 58.866 50.000 0.00 0.00 38.98 4.16
2629 3144 4.742417 ACTCAATCTTCGACTGATCACTG 58.258 43.478 0.00 0.00 0.00 3.66
2669 3184 9.705290 GAAAAAGCTTTGTCTTTCCCAATATAA 57.295 29.630 20.24 0.00 35.41 0.98
2670 3185 8.865090 TGAAAAAGCTTTGTCTTTCCCAATATA 58.135 29.630 25.99 2.76 35.41 0.86
2671 3186 7.734942 TGAAAAAGCTTTGTCTTTCCCAATAT 58.265 30.769 25.99 0.00 35.41 1.28
2672 3187 7.118496 TGAAAAAGCTTTGTCTTTCCCAATA 57.882 32.000 25.99 3.90 35.41 1.90
2673 3188 5.988287 TGAAAAAGCTTTGTCTTTCCCAAT 58.012 33.333 25.99 0.00 35.41 3.16
2674 3189 5.413309 TGAAAAAGCTTTGTCTTTCCCAA 57.587 34.783 25.99 5.24 35.41 4.12
2675 3190 5.186797 TCTTGAAAAAGCTTTGTCTTTCCCA 59.813 36.000 25.99 6.52 35.41 4.37
2676 3191 5.520288 GTCTTGAAAAAGCTTTGTCTTTCCC 59.480 40.000 25.99 9.88 35.41 3.97
2677 3192 5.230097 CGTCTTGAAAAAGCTTTGTCTTTCC 59.770 40.000 25.99 12.99 35.41 3.13
2678 3193 5.275927 GCGTCTTGAAAAAGCTTTGTCTTTC 60.276 40.000 25.99 19.00 35.41 2.62
2679 3194 4.562789 GCGTCTTGAAAAAGCTTTGTCTTT 59.437 37.500 25.99 11.65 37.86 2.52
2680 3195 4.105486 GCGTCTTGAAAAAGCTTTGTCTT 58.895 39.130 25.99 12.00 0.00 3.01
2681 3196 3.128589 TGCGTCTTGAAAAAGCTTTGTCT 59.871 39.130 25.99 9.30 0.00 3.41
2682 3197 3.434637 TGCGTCTTGAAAAAGCTTTGTC 58.565 40.909 20.63 20.63 0.00 3.18
2683 3198 3.128589 TCTGCGTCTTGAAAAAGCTTTGT 59.871 39.130 13.54 7.12 0.00 2.83
2684 3199 3.694734 TCTGCGTCTTGAAAAAGCTTTG 58.305 40.909 13.54 0.00 0.00 2.77
2685 3200 4.370364 TTCTGCGTCTTGAAAAAGCTTT 57.630 36.364 5.69 5.69 0.00 3.51
2686 3201 4.370364 TTTCTGCGTCTTGAAAAAGCTT 57.630 36.364 0.00 0.00 30.41 3.74
2687 3202 4.574599 ATTTCTGCGTCTTGAAAAAGCT 57.425 36.364 0.00 0.00 36.06 3.74
2688 3203 5.641777 AAATTTCTGCGTCTTGAAAAAGC 57.358 34.783 0.00 0.00 36.06 3.51
2689 3204 9.783425 GATAAAAATTTCTGCGTCTTGAAAAAG 57.217 29.630 0.00 0.00 36.06 2.27
2690 3205 9.307121 TGATAAAAATTTCTGCGTCTTGAAAAA 57.693 25.926 0.00 0.00 36.06 1.94
2691 3206 8.751335 GTGATAAAAATTTCTGCGTCTTGAAAA 58.249 29.630 0.00 0.00 36.06 2.29
2692 3207 8.134895 AGTGATAAAAATTTCTGCGTCTTGAAA 58.865 29.630 0.00 0.00 36.74 2.69
2693 3208 7.648142 AGTGATAAAAATTTCTGCGTCTTGAA 58.352 30.769 0.00 0.00 0.00 2.69
2694 3209 7.202016 AGTGATAAAAATTTCTGCGTCTTGA 57.798 32.000 0.00 0.00 0.00 3.02
2695 3210 6.524586 GGAGTGATAAAAATTTCTGCGTCTTG 59.475 38.462 0.00 0.00 0.00 3.02
2696 3211 6.431234 AGGAGTGATAAAAATTTCTGCGTCTT 59.569 34.615 0.00 0.00 0.00 3.01
2697 3212 5.940470 AGGAGTGATAAAAATTTCTGCGTCT 59.060 36.000 0.00 0.00 0.00 4.18
2698 3213 6.183309 AGGAGTGATAAAAATTTCTGCGTC 57.817 37.500 0.00 0.00 0.00 5.19
2699 3214 5.123979 GGAGGAGTGATAAAAATTTCTGCGT 59.876 40.000 0.00 0.00 0.00 5.24
2700 3215 5.449177 GGGAGGAGTGATAAAAATTTCTGCG 60.449 44.000 0.00 0.00 0.00 5.18
2701 3216 5.654209 AGGGAGGAGTGATAAAAATTTCTGC 59.346 40.000 0.00 0.00 0.00 4.26
2702 3217 7.148000 GGAAGGGAGGAGTGATAAAAATTTCTG 60.148 40.741 0.00 0.00 0.00 3.02
2703 3218 6.892456 GGAAGGGAGGAGTGATAAAAATTTCT 59.108 38.462 0.00 0.00 0.00 2.52
2704 3219 6.096987 GGGAAGGGAGGAGTGATAAAAATTTC 59.903 42.308 0.00 0.00 0.00 2.17
2705 3220 5.958380 GGGAAGGGAGGAGTGATAAAAATTT 59.042 40.000 0.00 0.00 0.00 1.82
2706 3221 5.519808 GGGAAGGGAGGAGTGATAAAAATT 58.480 41.667 0.00 0.00 0.00 1.82
2707 3222 4.079154 GGGGAAGGGAGGAGTGATAAAAAT 60.079 45.833 0.00 0.00 0.00 1.82
2708 3223 3.268595 GGGGAAGGGAGGAGTGATAAAAA 59.731 47.826 0.00 0.00 0.00 1.94
2709 3224 2.850568 GGGGAAGGGAGGAGTGATAAAA 59.149 50.000 0.00 0.00 0.00 1.52
2710 3225 2.488836 GGGGAAGGGAGGAGTGATAAA 58.511 52.381 0.00 0.00 0.00 1.40
2711 3226 1.345112 GGGGGAAGGGAGGAGTGATAA 60.345 57.143 0.00 0.00 0.00 1.75
2712 3227 0.267960 GGGGGAAGGGAGGAGTGATA 59.732 60.000 0.00 0.00 0.00 2.15
2713 3228 1.004891 GGGGGAAGGGAGGAGTGAT 59.995 63.158 0.00 0.00 0.00 3.06
2714 3229 2.454941 GGGGGAAGGGAGGAGTGA 59.545 66.667 0.00 0.00 0.00 3.41
2715 3230 3.083997 CGGGGGAAGGGAGGAGTG 61.084 72.222 0.00 0.00 0.00 3.51
2957 3474 4.680537 ACCTCCTCCACCGCGAGT 62.681 66.667 8.23 0.00 0.00 4.18
3078 3595 3.790437 CGCAGCAGGGGGTCTCAT 61.790 66.667 0.00 0.00 0.00 2.90
3149 3706 0.878523 CCGTCAGCCGAAACACAAGA 60.879 55.000 0.00 0.00 39.56 3.02
3152 3709 2.280524 CCCGTCAGCCGAAACACA 60.281 61.111 0.00 0.00 39.56 3.72
3303 3862 1.581954 CGCCGCACCACCAAATTTA 59.418 52.632 0.00 0.00 0.00 1.40
3305 3864 3.679738 CCGCCGCACCACCAAATT 61.680 61.111 0.00 0.00 0.00 1.82
3329 3889 3.238497 CACACACCACCTCCCCGA 61.238 66.667 0.00 0.00 0.00 5.14
3380 3940 0.972883 GCTGAGACCAACCTCACTCT 59.027 55.000 0.00 0.00 38.18 3.24
3392 3952 3.721706 CCCCACCCCTGCTGAGAC 61.722 72.222 0.00 0.00 0.00 3.36
3408 3968 0.175073 CGACTACTGCCTACCAACCC 59.825 60.000 0.00 0.00 0.00 4.11
3420 3980 0.039326 ACCAGCTACCACCGACTACT 59.961 55.000 0.00 0.00 0.00 2.57
3423 3983 1.119574 ACAACCAGCTACCACCGACT 61.120 55.000 0.00 0.00 0.00 4.18
3432 3992 3.523087 TTGCGCCGACAACCAGCTA 62.523 57.895 4.18 0.00 0.00 3.32
3433 3993 4.927782 TTGCGCCGACAACCAGCT 62.928 61.111 4.18 0.00 0.00 4.24
3440 4000 4.680237 CCTGGAGTTGCGCCGACA 62.680 66.667 4.18 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.