Multiple sequence alignment - TraesCS6B01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G351400 chr6B 100.000 3506 0 0 1 3506 616943471 616946976 0.000000e+00 6475.0
1 TraesCS6B01G351400 chr6B 94.954 654 32 1 2688 3340 702355117 702354464 0.000000e+00 1024.0
2 TraesCS6B01G351400 chr6B 92.157 102 8 0 3332 3433 702336253 702336152 1.010000e-30 145.0
3 TraesCS6B01G351400 chr6B 93.333 75 2 3 14 86 616936839 616936766 1.330000e-19 108.0
4 TraesCS6B01G351400 chr6B 97.561 41 1 0 200 240 29735333 29735293 1.750000e-08 71.3
5 TraesCS6B01G351400 chr6D 89.262 2440 183 48 239 2627 410113402 410110991 0.000000e+00 2981.0
6 TraesCS6B01G351400 chr6D 80.702 399 35 14 1051 1444 463226899 463226538 4.460000e-69 272.0
7 TraesCS6B01G351400 chr6D 95.161 62 3 0 25 86 132199054 132198993 8.010000e-17 99.0
8 TraesCS6B01G351400 chr6A 89.422 1333 82 17 638 1935 555395955 555394647 0.000000e+00 1626.0
9 TraesCS6B01G351400 chr6A 94.400 500 24 1 2042 2541 555384400 555383905 0.000000e+00 765.0
10 TraesCS6B01G351400 chr6A 93.631 157 8 1 87 241 326800042 326799886 2.100000e-57 233.0
11 TraesCS6B01G351400 chr6A 90.598 117 5 2 1931 2047 555389693 555389583 2.180000e-32 150.0
12 TraesCS6B01G351400 chr6A 81.818 154 11 7 419 571 555396123 555395986 2.860000e-21 113.0
13 TraesCS6B01G351400 chr4A 97.351 151 4 0 87 237 538890832 538890982 1.250000e-64 257.0
14 TraesCS6B01G351400 chr4A 94.231 156 8 1 87 241 319830767 319830922 1.630000e-58 237.0
15 TraesCS6B01G351400 chr7A 92.949 156 10 1 87 241 439797425 439797580 3.520000e-55 226.0
16 TraesCS6B01G351400 chr5B 94.595 74 3 1 14 86 465529903 465529976 2.860000e-21 113.0
17 TraesCS6B01G351400 chr5B 91.892 74 5 1 14 86 465523280 465523207 6.190000e-18 102.0
18 TraesCS6B01G351400 chr5B 97.619 42 1 0 202 243 475665849 475665808 4.850000e-09 73.1
19 TraesCS6B01G351400 chr5D 95.161 62 3 0 25 86 13479296 13479357 8.010000e-17 99.0
20 TraesCS6B01G351400 chr4D 89.474 76 7 1 12 86 237980907 237980832 1.040000e-15 95.3
21 TraesCS6B01G351400 chr3A 89.333 75 7 1 14 87 119483785 119483711 3.730000e-15 93.5
22 TraesCS6B01G351400 chr3A 90.000 50 4 1 192 240 715135722 715135673 2.920000e-06 63.9
23 TraesCS6B01G351400 chr3A 92.500 40 2 1 14 52 119656228 119656267 4.890000e-04 56.5
24 TraesCS6B01G351400 chr3A 96.875 32 1 0 55 86 119683295 119683326 2.000000e-03 54.7
25 TraesCS6B01G351400 chr7B 87.931 58 7 0 187 244 589685093 589685150 6.280000e-08 69.4
26 TraesCS6B01G351400 chr1A 77.876 113 21 4 132 241 538134964 538134853 2.260000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G351400 chr6B 616943471 616946976 3505 False 6475.0 6475 100.000 1 3506 1 chr6B.!!$F1 3505
1 TraesCS6B01G351400 chr6B 702354464 702355117 653 True 1024.0 1024 94.954 2688 3340 1 chr6B.!!$R4 652
2 TraesCS6B01G351400 chr6D 410110991 410113402 2411 True 2981.0 2981 89.262 239 2627 1 chr6D.!!$R2 2388
3 TraesCS6B01G351400 chr6A 555394647 555396123 1476 True 869.5 1626 85.620 419 1935 2 chr6A.!!$R4 1516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.107831 ACGGGCTTGTTTGCTAGTCA 59.892 50.0 0.00 0.0 0.00 3.41 F
602 628 0.109272 GCGATGCAGCTAGCCGTATA 60.109 55.0 12.13 0.0 44.83 1.47 F
628 657 0.248289 GGGTTAGAAGCTGTGGCGTA 59.752 55.0 0.00 0.0 44.37 4.42 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1567 0.874390 CGACAACATGGTGAAGGTGG 59.126 55.0 19.9 0.0 0.00 4.61 R
1587 1670 0.877071 TGAGGTCGAGGAACACGTAC 59.123 55.0 0.0 0.0 44.14 3.67 R
2627 2710 0.868406 GTGTCTCGCTTTGGTTGAGG 59.132 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.928416 ACGGGCTTGTTTGCTAGTC 58.072 52.632 0.00 0.00 0.00 2.59
19 20 0.107831 ACGGGCTTGTTTGCTAGTCA 59.892 50.000 0.00 0.00 0.00 3.41
20 21 1.234821 CGGGCTTGTTTGCTAGTCAA 58.765 50.000 0.00 0.00 0.00 3.18
21 22 1.197721 CGGGCTTGTTTGCTAGTCAAG 59.802 52.381 11.68 11.68 40.71 3.02
22 23 2.230660 GGGCTTGTTTGCTAGTCAAGT 58.769 47.619 14.99 0.00 40.14 3.16
23 24 2.623416 GGGCTTGTTTGCTAGTCAAGTT 59.377 45.455 14.99 0.00 40.14 2.66
24 25 3.818773 GGGCTTGTTTGCTAGTCAAGTTA 59.181 43.478 14.99 1.29 40.14 2.24
25 26 4.277423 GGGCTTGTTTGCTAGTCAAGTTAA 59.723 41.667 14.99 6.65 40.14 2.01
26 27 5.221165 GGGCTTGTTTGCTAGTCAAGTTAAA 60.221 40.000 14.99 0.00 40.14 1.52
27 28 5.915196 GGCTTGTTTGCTAGTCAAGTTAAAG 59.085 40.000 14.99 11.09 40.14 1.85
28 29 6.238648 GGCTTGTTTGCTAGTCAAGTTAAAGA 60.239 38.462 14.99 0.00 40.14 2.52
29 30 7.193595 GCTTGTTTGCTAGTCAAGTTAAAGAA 58.806 34.615 14.99 0.00 40.14 2.52
30 31 7.700656 GCTTGTTTGCTAGTCAAGTTAAAGAAA 59.299 33.333 14.99 0.00 40.14 2.52
31 32 9.226345 CTTGTTTGCTAGTCAAGTTAAAGAAAG 57.774 33.333 0.00 0.00 35.84 2.62
32 33 8.500753 TGTTTGCTAGTCAAGTTAAAGAAAGA 57.499 30.769 0.00 0.00 35.84 2.52
33 34 9.120538 TGTTTGCTAGTCAAGTTAAAGAAAGAT 57.879 29.630 0.00 0.00 35.84 2.40
34 35 9.387123 GTTTGCTAGTCAAGTTAAAGAAAGATG 57.613 33.333 0.00 0.00 35.84 2.90
35 36 8.677148 TTGCTAGTCAAGTTAAAGAAAGATGT 57.323 30.769 0.00 0.00 0.00 3.06
36 37 8.087982 TGCTAGTCAAGTTAAAGAAAGATGTG 57.912 34.615 0.00 0.00 0.00 3.21
37 38 7.715249 TGCTAGTCAAGTTAAAGAAAGATGTGT 59.285 33.333 0.00 0.00 0.00 3.72
38 39 8.224437 GCTAGTCAAGTTAAAGAAAGATGTGTC 58.776 37.037 0.00 0.00 0.00 3.67
39 40 9.261180 CTAGTCAAGTTAAAGAAAGATGTGTCA 57.739 33.333 0.00 0.00 0.00 3.58
40 41 8.682936 AGTCAAGTTAAAGAAAGATGTGTCAT 57.317 30.769 0.00 0.00 0.00 3.06
41 42 8.778358 AGTCAAGTTAAAGAAAGATGTGTCATC 58.222 33.333 1.98 1.98 0.00 2.92
42 43 8.559536 GTCAAGTTAAAGAAAGATGTGTCATCA 58.440 33.333 11.47 0.00 0.00 3.07
43 44 8.777413 TCAAGTTAAAGAAAGATGTGTCATCAG 58.223 33.333 11.47 0.00 0.00 2.90
44 45 8.777413 CAAGTTAAAGAAAGATGTGTCATCAGA 58.223 33.333 11.47 0.00 0.00 3.27
45 46 9.512588 AAGTTAAAGAAAGATGTGTCATCAGAT 57.487 29.630 11.47 0.00 0.00 2.90
46 47 9.160496 AGTTAAAGAAAGATGTGTCATCAGATC 57.840 33.333 11.47 6.83 42.38 2.75
47 48 8.939929 GTTAAAGAAAGATGTGTCATCAGATCA 58.060 33.333 11.47 0.00 43.83 2.92
48 49 7.991084 AAAGAAAGATGTGTCATCAGATCAA 57.009 32.000 11.47 0.00 43.83 2.57
49 50 7.991084 AAGAAAGATGTGTCATCAGATCAAA 57.009 32.000 11.47 0.00 43.83 2.69
50 51 7.612668 AGAAAGATGTGTCATCAGATCAAAG 57.387 36.000 11.47 0.00 43.83 2.77
51 52 7.166851 AGAAAGATGTGTCATCAGATCAAAGT 58.833 34.615 11.47 0.00 43.83 2.66
52 53 6.738832 AAGATGTGTCATCAGATCAAAGTG 57.261 37.500 11.47 0.00 43.83 3.16
53 54 5.802465 AGATGTGTCATCAGATCAAAGTGT 58.198 37.500 11.47 0.00 43.83 3.55
54 55 5.873712 AGATGTGTCATCAGATCAAAGTGTC 59.126 40.000 11.47 0.00 43.83 3.67
55 56 4.959723 TGTGTCATCAGATCAAAGTGTCA 58.040 39.130 0.00 0.00 0.00 3.58
56 57 4.992951 TGTGTCATCAGATCAAAGTGTCAG 59.007 41.667 0.00 0.00 0.00 3.51
57 58 4.391216 GTGTCATCAGATCAAAGTGTCAGG 59.609 45.833 0.00 0.00 0.00 3.86
58 59 4.284234 TGTCATCAGATCAAAGTGTCAGGA 59.716 41.667 0.00 0.00 0.00 3.86
59 60 5.221702 TGTCATCAGATCAAAGTGTCAGGAA 60.222 40.000 0.00 0.00 0.00 3.36
60 61 5.702670 GTCATCAGATCAAAGTGTCAGGAAA 59.297 40.000 0.00 0.00 0.00 3.13
61 62 6.205464 GTCATCAGATCAAAGTGTCAGGAAAA 59.795 38.462 0.00 0.00 0.00 2.29
62 63 6.429078 TCATCAGATCAAAGTGTCAGGAAAAG 59.571 38.462 0.00 0.00 0.00 2.27
63 64 5.684704 TCAGATCAAAGTGTCAGGAAAAGT 58.315 37.500 0.00 0.00 0.00 2.66
64 65 5.528690 TCAGATCAAAGTGTCAGGAAAAGTG 59.471 40.000 0.00 0.00 0.00 3.16
65 66 5.297776 CAGATCAAAGTGTCAGGAAAAGTGT 59.702 40.000 0.00 0.00 0.00 3.55
66 67 4.963276 TCAAAGTGTCAGGAAAAGTGTG 57.037 40.909 0.00 0.00 0.00 3.82
67 68 4.331968 TCAAAGTGTCAGGAAAAGTGTGT 58.668 39.130 0.00 0.00 0.00 3.72
68 69 4.394920 TCAAAGTGTCAGGAAAAGTGTGTC 59.605 41.667 0.00 0.00 0.00 3.67
69 70 3.627395 AGTGTCAGGAAAAGTGTGTCA 57.373 42.857 0.00 0.00 0.00 3.58
70 71 4.156455 AGTGTCAGGAAAAGTGTGTCAT 57.844 40.909 0.00 0.00 0.00 3.06
71 72 5.290493 AGTGTCAGGAAAAGTGTGTCATA 57.710 39.130 0.00 0.00 0.00 2.15
72 73 5.869579 AGTGTCAGGAAAAGTGTGTCATAT 58.130 37.500 0.00 0.00 0.00 1.78
73 74 7.004555 AGTGTCAGGAAAAGTGTGTCATATA 57.995 36.000 0.00 0.00 0.00 0.86
74 75 7.450074 AGTGTCAGGAAAAGTGTGTCATATAA 58.550 34.615 0.00 0.00 0.00 0.98
75 76 8.103305 AGTGTCAGGAAAAGTGTGTCATATAAT 58.897 33.333 0.00 0.00 0.00 1.28
76 77 8.391106 GTGTCAGGAAAAGTGTGTCATATAATC 58.609 37.037 0.00 0.00 0.00 1.75
77 78 8.100164 TGTCAGGAAAAGTGTGTCATATAATCA 58.900 33.333 0.00 0.00 0.00 2.57
78 79 8.946085 GTCAGGAAAAGTGTGTCATATAATCAA 58.054 33.333 0.00 0.00 0.00 2.57
79 80 9.685276 TCAGGAAAAGTGTGTCATATAATCAAT 57.315 29.630 0.00 0.00 0.00 2.57
85 86 9.793252 AAAGTGTGTCATATAATCAATTTGCTC 57.207 29.630 0.00 0.00 0.00 4.26
86 87 8.743085 AGTGTGTCATATAATCAATTTGCTCT 57.257 30.769 0.00 0.00 0.00 4.09
87 88 9.836864 AGTGTGTCATATAATCAATTTGCTCTA 57.163 29.630 0.00 0.00 0.00 2.43
89 90 9.836864 TGTGTCATATAATCAATTTGCTCTAGT 57.163 29.630 0.00 0.00 0.00 2.57
99 100 7.926674 TCAATTTGCTCTAGTTTGATGATGA 57.073 32.000 0.00 0.00 0.00 2.92
100 101 7.755591 TCAATTTGCTCTAGTTTGATGATGAC 58.244 34.615 0.00 0.00 0.00 3.06
101 102 5.784750 TTTGCTCTAGTTTGATGATGACG 57.215 39.130 0.00 0.00 0.00 4.35
102 103 4.718940 TGCTCTAGTTTGATGATGACGA 57.281 40.909 0.00 0.00 0.00 4.20
103 104 5.072040 TGCTCTAGTTTGATGATGACGAA 57.928 39.130 0.00 0.00 0.00 3.85
104 105 4.864806 TGCTCTAGTTTGATGATGACGAAC 59.135 41.667 0.00 0.00 33.35 3.95
105 106 4.027295 GCTCTAGTTTGATGATGACGAACG 60.027 45.833 0.00 0.00 36.92 3.95
106 107 4.421058 TCTAGTTTGATGATGACGAACGG 58.579 43.478 0.00 0.00 36.92 4.44
107 108 3.040147 AGTTTGATGATGACGAACGGT 57.960 42.857 0.00 0.00 36.92 4.83
108 109 4.182693 AGTTTGATGATGACGAACGGTA 57.817 40.909 0.00 0.00 36.92 4.02
109 110 3.924686 AGTTTGATGATGACGAACGGTAC 59.075 43.478 0.00 0.00 36.92 3.34
124 125 1.625511 GGTACGGGGATTAGATCGGT 58.374 55.000 0.00 0.00 0.00 4.69
125 126 1.966354 GGTACGGGGATTAGATCGGTT 59.034 52.381 0.00 0.00 0.00 4.44
126 127 2.288640 GGTACGGGGATTAGATCGGTTG 60.289 54.545 0.00 0.00 0.00 3.77
127 128 1.784358 ACGGGGATTAGATCGGTTGA 58.216 50.000 0.00 0.00 0.00 3.18
128 129 2.326428 ACGGGGATTAGATCGGTTGAT 58.674 47.619 0.00 0.00 37.60 2.57
129 130 2.704065 ACGGGGATTAGATCGGTTGATT 59.296 45.455 0.00 0.00 34.09 2.57
130 131 3.899360 ACGGGGATTAGATCGGTTGATTA 59.101 43.478 0.00 0.00 34.09 1.75
131 132 4.021368 ACGGGGATTAGATCGGTTGATTAG 60.021 45.833 0.00 0.00 34.09 1.73
132 133 4.021368 CGGGGATTAGATCGGTTGATTAGT 60.021 45.833 0.00 0.00 34.09 2.24
133 134 5.238583 GGGGATTAGATCGGTTGATTAGTG 58.761 45.833 0.00 0.00 34.09 2.74
134 135 5.238583 GGGATTAGATCGGTTGATTAGTGG 58.761 45.833 0.00 0.00 34.09 4.00
135 136 4.691216 GGATTAGATCGGTTGATTAGTGGC 59.309 45.833 0.00 0.00 34.09 5.01
136 137 5.511545 GGATTAGATCGGTTGATTAGTGGCT 60.512 44.000 0.00 0.00 34.09 4.75
137 138 3.914426 AGATCGGTTGATTAGTGGCTT 57.086 42.857 0.00 0.00 34.09 4.35
138 139 3.535561 AGATCGGTTGATTAGTGGCTTG 58.464 45.455 0.00 0.00 34.09 4.01
139 140 2.851263 TCGGTTGATTAGTGGCTTGT 57.149 45.000 0.00 0.00 0.00 3.16
140 141 3.134574 TCGGTTGATTAGTGGCTTGTT 57.865 42.857 0.00 0.00 0.00 2.83
141 142 2.811431 TCGGTTGATTAGTGGCTTGTTG 59.189 45.455 0.00 0.00 0.00 3.33
142 143 2.668279 CGGTTGATTAGTGGCTTGTTGC 60.668 50.000 0.00 0.00 41.94 4.17
143 144 2.584791 GTTGATTAGTGGCTTGTTGCG 58.415 47.619 0.00 0.00 44.05 4.85
144 145 1.890876 TGATTAGTGGCTTGTTGCGT 58.109 45.000 0.00 0.00 44.05 5.24
145 146 2.226330 TGATTAGTGGCTTGTTGCGTT 58.774 42.857 0.00 0.00 44.05 4.84
146 147 3.403968 TGATTAGTGGCTTGTTGCGTTA 58.596 40.909 0.00 0.00 44.05 3.18
147 148 3.815962 TGATTAGTGGCTTGTTGCGTTAA 59.184 39.130 0.00 0.00 44.05 2.01
148 149 3.612472 TTAGTGGCTTGTTGCGTTAAC 57.388 42.857 0.00 0.00 44.05 2.01
149 150 0.666374 AGTGGCTTGTTGCGTTAACC 59.334 50.000 0.00 0.00 44.05 2.85
150 151 0.382515 GTGGCTTGTTGCGTTAACCA 59.617 50.000 0.00 0.00 44.05 3.67
151 152 0.382515 TGGCTTGTTGCGTTAACCAC 59.617 50.000 0.00 0.00 44.05 4.16
152 153 0.382515 GGCTTGTTGCGTTAACCACA 59.617 50.000 0.00 0.00 44.05 4.17
153 154 1.000717 GGCTTGTTGCGTTAACCACAT 60.001 47.619 0.00 0.00 44.05 3.21
154 155 2.226912 GGCTTGTTGCGTTAACCACATA 59.773 45.455 0.00 0.00 44.05 2.29
155 156 3.488489 GCTTGTTGCGTTAACCACATAG 58.512 45.455 0.00 3.54 38.55 2.23
156 157 3.187637 GCTTGTTGCGTTAACCACATAGA 59.812 43.478 0.00 0.00 38.55 1.98
157 158 4.142687 GCTTGTTGCGTTAACCACATAGAT 60.143 41.667 0.00 0.00 38.55 1.98
158 159 4.937696 TGTTGCGTTAACCACATAGATG 57.062 40.909 0.00 0.00 38.55 2.90
159 160 4.320023 TGTTGCGTTAACCACATAGATGT 58.680 39.130 0.00 0.00 38.55 3.06
160 161 4.757657 TGTTGCGTTAACCACATAGATGTT 59.242 37.500 0.00 0.00 36.68 2.71
161 162 5.239744 TGTTGCGTTAACCACATAGATGTTT 59.760 36.000 0.00 0.00 36.68 2.83
162 163 5.950758 TGCGTTAACCACATAGATGTTTT 57.049 34.783 0.00 0.00 39.39 2.43
163 164 7.041303 TGTTGCGTTAACCACATAGATGTTTTA 60.041 33.333 0.00 0.00 36.68 1.52
164 165 7.067532 TGCGTTAACCACATAGATGTTTTAG 57.932 36.000 0.00 0.00 39.39 1.85
165 166 6.874664 TGCGTTAACCACATAGATGTTTTAGA 59.125 34.615 0.00 0.00 39.39 2.10
166 167 7.148540 TGCGTTAACCACATAGATGTTTTAGAC 60.149 37.037 0.00 0.00 39.39 2.59
167 168 7.675637 GCGTTAACCACATAGATGTTTTAGACC 60.676 40.741 0.00 0.00 39.39 3.85
168 169 7.201582 CGTTAACCACATAGATGTTTTAGACCC 60.202 40.741 0.00 0.00 39.39 4.46
169 170 6.388619 AACCACATAGATGTTTTAGACCCT 57.611 37.500 0.00 0.00 39.39 4.34
170 171 6.388619 ACCACATAGATGTTTTAGACCCTT 57.611 37.500 0.00 0.00 39.39 3.95
171 172 6.180472 ACCACATAGATGTTTTAGACCCTTG 58.820 40.000 0.00 0.00 39.39 3.61
172 173 5.590259 CCACATAGATGTTTTAGACCCTTGG 59.410 44.000 0.00 0.00 39.39 3.61
173 174 6.414732 CACATAGATGTTTTAGACCCTTGGA 58.585 40.000 0.00 0.00 39.39 3.53
174 175 7.056635 CACATAGATGTTTTAGACCCTTGGAT 58.943 38.462 0.00 0.00 39.39 3.41
175 176 7.227512 CACATAGATGTTTTAGACCCTTGGATC 59.772 40.741 0.00 0.00 39.39 3.36
176 177 4.770795 AGATGTTTTAGACCCTTGGATCG 58.229 43.478 0.00 0.00 0.00 3.69
177 178 3.343941 TGTTTTAGACCCTTGGATCGG 57.656 47.619 0.00 0.00 0.00 4.18
178 179 2.014857 GTTTTAGACCCTTGGATCGGC 58.985 52.381 0.00 0.00 0.00 5.54
179 180 1.580059 TTTAGACCCTTGGATCGGCT 58.420 50.000 0.00 0.00 0.00 5.52
180 181 2.464796 TTAGACCCTTGGATCGGCTA 57.535 50.000 0.00 0.00 0.00 3.93
181 182 1.996798 TAGACCCTTGGATCGGCTAG 58.003 55.000 0.00 0.00 0.00 3.42
182 183 0.261991 AGACCCTTGGATCGGCTAGA 59.738 55.000 0.00 0.00 0.00 2.43
183 184 1.133009 AGACCCTTGGATCGGCTAGAT 60.133 52.381 0.00 0.00 43.51 1.98
184 185 2.110188 AGACCCTTGGATCGGCTAGATA 59.890 50.000 0.00 0.00 40.26 1.98
185 186 2.897969 GACCCTTGGATCGGCTAGATAA 59.102 50.000 0.00 0.00 40.26 1.75
186 187 3.314693 ACCCTTGGATCGGCTAGATAAA 58.685 45.455 0.00 0.00 40.26 1.40
187 188 3.071167 ACCCTTGGATCGGCTAGATAAAC 59.929 47.826 0.00 0.00 40.26 2.01
188 189 3.318017 CCTTGGATCGGCTAGATAAACG 58.682 50.000 0.00 0.00 40.26 3.60
189 190 3.318017 CTTGGATCGGCTAGATAAACGG 58.682 50.000 0.00 0.00 40.26 4.44
190 191 2.313317 TGGATCGGCTAGATAAACGGT 58.687 47.619 0.00 0.00 40.26 4.83
191 192 2.696707 TGGATCGGCTAGATAAACGGTT 59.303 45.455 0.00 0.00 40.26 4.44
192 193 3.243636 TGGATCGGCTAGATAAACGGTTC 60.244 47.826 0.00 0.00 40.26 3.62
193 194 3.005578 GGATCGGCTAGATAAACGGTTCT 59.994 47.826 0.00 0.00 40.26 3.01
194 195 3.431922 TCGGCTAGATAAACGGTTCTG 57.568 47.619 0.00 0.00 0.00 3.02
195 196 2.100252 TCGGCTAGATAAACGGTTCTGG 59.900 50.000 0.00 0.00 0.00 3.86
196 197 2.159142 CGGCTAGATAAACGGTTCTGGT 60.159 50.000 0.00 0.00 0.00 4.00
197 198 3.677976 CGGCTAGATAAACGGTTCTGGTT 60.678 47.826 0.00 0.00 0.00 3.67
198 199 4.440525 CGGCTAGATAAACGGTTCTGGTTA 60.441 45.833 0.00 0.00 0.00 2.85
199 200 5.608449 GGCTAGATAAACGGTTCTGGTTAT 58.392 41.667 0.00 2.06 0.00 1.89
200 201 6.053650 GGCTAGATAAACGGTTCTGGTTATT 58.946 40.000 0.00 0.00 0.00 1.40
201 202 6.541278 GGCTAGATAAACGGTTCTGGTTATTT 59.459 38.462 0.00 1.66 0.00 1.40
202 203 7.407337 GCTAGATAAACGGTTCTGGTTATTTG 58.593 38.462 0.00 0.49 0.00 2.32
203 204 6.753107 AGATAAACGGTTCTGGTTATTTGG 57.247 37.500 0.00 0.00 0.00 3.28
204 205 6.478129 AGATAAACGGTTCTGGTTATTTGGA 58.522 36.000 0.00 0.00 0.00 3.53
205 206 7.116736 AGATAAACGGTTCTGGTTATTTGGAT 58.883 34.615 0.00 0.00 0.00 3.41
206 207 5.638596 AAACGGTTCTGGTTATTTGGATC 57.361 39.130 0.00 0.00 0.00 3.36
207 208 4.569719 ACGGTTCTGGTTATTTGGATCT 57.430 40.909 0.00 0.00 0.00 2.75
208 209 4.261801 ACGGTTCTGGTTATTTGGATCTG 58.738 43.478 0.00 0.00 0.00 2.90
209 210 3.065371 CGGTTCTGGTTATTTGGATCTGC 59.935 47.826 0.00 0.00 0.00 4.26
210 211 3.381590 GGTTCTGGTTATTTGGATCTGCC 59.618 47.826 0.00 0.00 37.10 4.85
211 212 3.297134 TCTGGTTATTTGGATCTGCCC 57.703 47.619 0.00 0.00 34.97 5.36
212 213 2.091885 TCTGGTTATTTGGATCTGCCCC 60.092 50.000 0.00 0.00 34.97 5.80
213 214 1.929494 TGGTTATTTGGATCTGCCCCT 59.071 47.619 0.00 0.00 34.97 4.79
214 215 2.314549 TGGTTATTTGGATCTGCCCCTT 59.685 45.455 0.00 0.00 34.97 3.95
215 216 3.245948 TGGTTATTTGGATCTGCCCCTTT 60.246 43.478 0.00 0.00 34.97 3.11
216 217 3.384789 GGTTATTTGGATCTGCCCCTTTC 59.615 47.826 0.00 0.00 34.97 2.62
217 218 4.281657 GTTATTTGGATCTGCCCCTTTCT 58.718 43.478 0.00 0.00 34.97 2.52
218 219 2.999185 TTTGGATCTGCCCCTTTCTT 57.001 45.000 0.00 0.00 34.97 2.52
219 220 2.514458 TTGGATCTGCCCCTTTCTTC 57.486 50.000 0.00 0.00 34.97 2.87
220 221 1.673767 TGGATCTGCCCCTTTCTTCT 58.326 50.000 0.00 0.00 34.97 2.85
221 222 1.995542 TGGATCTGCCCCTTTCTTCTT 59.004 47.619 0.00 0.00 34.97 2.52
222 223 2.379907 TGGATCTGCCCCTTTCTTCTTT 59.620 45.455 0.00 0.00 34.97 2.52
223 224 3.181418 TGGATCTGCCCCTTTCTTCTTTT 60.181 43.478 0.00 0.00 34.97 2.27
224 225 3.834813 GGATCTGCCCCTTTCTTCTTTTT 59.165 43.478 0.00 0.00 0.00 1.94
225 226 5.016831 GGATCTGCCCCTTTCTTCTTTTTA 58.983 41.667 0.00 0.00 0.00 1.52
226 227 5.658634 GGATCTGCCCCTTTCTTCTTTTTAT 59.341 40.000 0.00 0.00 0.00 1.40
227 228 6.833933 GGATCTGCCCCTTTCTTCTTTTTATA 59.166 38.462 0.00 0.00 0.00 0.98
228 229 7.013750 GGATCTGCCCCTTTCTTCTTTTTATAG 59.986 40.741 0.00 0.00 0.00 1.31
229 230 6.187682 TCTGCCCCTTTCTTCTTTTTATAGG 58.812 40.000 0.00 0.00 0.00 2.57
230 231 5.269189 TGCCCCTTTCTTCTTTTTATAGGG 58.731 41.667 0.00 0.00 40.44 3.53
235 236 7.640313 CCCTTTCTTCTTTTTATAGGGGTAGT 58.360 38.462 0.00 0.00 37.72 2.73
236 237 8.775151 CCCTTTCTTCTTTTTATAGGGGTAGTA 58.225 37.037 0.00 0.00 37.72 1.82
237 238 9.833917 CCTTTCTTCTTTTTATAGGGGTAGTAG 57.166 37.037 0.00 0.00 0.00 2.57
251 252 3.505293 GGGTAGTAGATACACCGATCCAC 59.495 52.174 0.00 0.00 35.96 4.02
252 253 4.396522 GGTAGTAGATACACCGATCCACT 58.603 47.826 0.00 0.00 35.96 4.00
254 255 3.488363 AGTAGATACACCGATCCACTCC 58.512 50.000 0.00 0.00 0.00 3.85
255 256 2.454336 AGATACACCGATCCACTCCA 57.546 50.000 0.00 0.00 0.00 3.86
256 257 2.964209 AGATACACCGATCCACTCCAT 58.036 47.619 0.00 0.00 0.00 3.41
257 258 2.894126 AGATACACCGATCCACTCCATC 59.106 50.000 0.00 0.00 0.00 3.51
258 259 2.454336 TACACCGATCCACTCCATCT 57.546 50.000 0.00 0.00 0.00 2.90
259 260 0.826715 ACACCGATCCACTCCATCTG 59.173 55.000 0.00 0.00 0.00 2.90
270 271 1.066143 ACTCCATCTGCGTTTACCTGG 60.066 52.381 0.00 0.00 0.00 4.45
279 280 2.102757 TGCGTTTACCTGGACTGTGTAA 59.897 45.455 0.00 0.00 0.00 2.41
280 281 2.735134 GCGTTTACCTGGACTGTGTAAG 59.265 50.000 0.00 0.00 0.00 2.34
284 285 4.819105 TTACCTGGACTGTGTAAGATGG 57.181 45.455 0.00 0.00 0.00 3.51
287 288 2.350522 CTGGACTGTGTAAGATGGCAC 58.649 52.381 0.00 0.00 36.26 5.01
290 291 2.076863 GACTGTGTAAGATGGCACCAC 58.923 52.381 0.00 0.00 34.94 4.16
302 303 3.434319 CACCACCACCATCAGCGC 61.434 66.667 0.00 0.00 0.00 5.92
304 305 3.434319 CCACCACCATCAGCGCAC 61.434 66.667 11.47 0.00 0.00 5.34
311 312 1.349627 CCATCAGCGCACGATGAAC 59.650 57.895 30.44 0.00 43.95 3.18
312 313 1.360931 CCATCAGCGCACGATGAACA 61.361 55.000 30.44 0.00 43.95 3.18
313 314 0.654160 CATCAGCGCACGATGAACAT 59.346 50.000 26.84 0.00 43.95 2.71
315 316 2.003196 TCAGCGCACGATGAACATAA 57.997 45.000 11.47 0.00 37.61 1.90
317 318 2.935849 TCAGCGCACGATGAACATAAAT 59.064 40.909 11.47 0.00 37.61 1.40
331 336 9.892987 GATGAACATAAATAAATCTCGATAGCG 57.107 33.333 0.00 0.00 39.35 4.26
344 349 5.166398 TCTCGATAGCGTTATCTCGACATA 58.834 41.667 15.99 0.00 35.41 2.29
403 429 2.689785 CCCACACGCGTCCTACGTA 61.690 63.158 9.86 0.00 44.73 3.57
416 442 3.827302 GTCCTACGTATGGATCCATCTGT 59.173 47.826 30.61 27.93 37.82 3.41
424 450 0.769873 GGATCCATCTGTCATGGCCT 59.230 55.000 6.95 0.00 39.01 5.19
425 451 1.544982 GGATCCATCTGTCATGGCCTG 60.545 57.143 6.95 0.00 39.01 4.85
426 452 1.419012 GATCCATCTGTCATGGCCTGA 59.581 52.381 3.32 2.06 39.01 3.86
427 453 1.288188 TCCATCTGTCATGGCCTGAA 58.712 50.000 3.32 0.00 39.01 3.02
428 454 1.065199 TCCATCTGTCATGGCCTGAAC 60.065 52.381 3.32 0.00 39.01 3.18
429 455 1.386533 CATCTGTCATGGCCTGAACC 58.613 55.000 3.32 0.00 35.07 3.62
430 456 1.064906 CATCTGTCATGGCCTGAACCT 60.065 52.381 3.32 0.00 35.07 3.50
457 483 3.432051 CTAGGGGACAGAAGGCGCG 62.432 68.421 0.00 0.00 0.00 6.86
489 515 0.179029 AATTAACCGGGCGATCAGGG 60.179 55.000 6.32 0.00 34.87 4.45
508 534 3.330853 CGCGCGATCCCTTAGCAC 61.331 66.667 28.94 0.00 0.00 4.40
569 595 1.424403 TCATTCTGTTGTGCCGTACG 58.576 50.000 8.69 8.69 0.00 3.67
570 596 1.144969 CATTCTGTTGTGCCGTACGT 58.855 50.000 15.21 0.00 0.00 3.57
571 597 2.030096 TCATTCTGTTGTGCCGTACGTA 60.030 45.455 15.21 0.00 0.00 3.57
572 598 2.054687 TTCTGTTGTGCCGTACGTAG 57.945 50.000 15.21 0.29 0.00 3.51
600 626 2.027605 GCGATGCAGCTAGCCGTA 59.972 61.111 12.13 0.00 44.83 4.02
601 627 1.373497 GCGATGCAGCTAGCCGTAT 60.373 57.895 12.13 6.10 44.83 3.06
602 628 0.109272 GCGATGCAGCTAGCCGTATA 60.109 55.000 12.13 0.00 44.83 1.47
604 630 1.618861 GATGCAGCTAGCCGTATACG 58.381 55.000 18.40 18.40 44.83 3.06
606 632 0.742505 TGCAGCTAGCCGTATACGTT 59.257 50.000 22.87 13.48 44.83 3.99
607 633 1.268896 TGCAGCTAGCCGTATACGTTC 60.269 52.381 22.87 14.25 44.83 3.95
608 634 1.268896 GCAGCTAGCCGTATACGTTCA 60.269 52.381 22.87 7.08 37.23 3.18
613 642 1.188863 AGCCGTATACGTTCAGGGTT 58.811 50.000 22.87 2.76 37.74 4.11
622 651 1.692519 ACGTTCAGGGTTAGAAGCTGT 59.307 47.619 0.00 0.00 0.00 4.40
623 652 2.069273 CGTTCAGGGTTAGAAGCTGTG 58.931 52.381 0.00 0.00 0.00 3.66
624 653 2.427506 GTTCAGGGTTAGAAGCTGTGG 58.572 52.381 0.00 0.00 0.00 4.17
625 654 0.324943 TCAGGGTTAGAAGCTGTGGC 59.675 55.000 0.00 0.00 39.06 5.01
626 655 1.021390 CAGGGTTAGAAGCTGTGGCG 61.021 60.000 0.00 0.00 44.37 5.69
627 656 1.003718 GGGTTAGAAGCTGTGGCGT 60.004 57.895 0.00 0.00 44.37 5.68
628 657 0.248289 GGGTTAGAAGCTGTGGCGTA 59.752 55.000 0.00 0.00 44.37 4.42
629 658 1.641577 GGTTAGAAGCTGTGGCGTAG 58.358 55.000 0.00 0.00 44.37 3.51
630 659 1.641577 GTTAGAAGCTGTGGCGTAGG 58.358 55.000 0.00 0.00 44.37 3.18
810 866 4.059459 CGTGGCGTTGCTCGTGAC 62.059 66.667 4.16 1.32 42.13 3.67
870 926 1.444553 GAGGAGTGGAGTTCGTGCG 60.445 63.158 0.00 0.00 0.00 5.34
871 927 1.863662 GAGGAGTGGAGTTCGTGCGA 61.864 60.000 0.00 0.00 0.00 5.10
892 948 4.441634 CGAAAGCCAGGTAGTAGTAAGCAT 60.442 45.833 0.00 0.00 0.00 3.79
894 950 2.623889 AGCCAGGTAGTAGTAAGCATCG 59.376 50.000 0.00 0.00 0.00 3.84
898 954 4.097437 CCAGGTAGTAGTAAGCATCGACAA 59.903 45.833 0.00 0.00 0.00 3.18
922 978 7.639162 ATCGTATTCATTCATTTACGAGACC 57.361 36.000 9.48 0.00 46.42 3.85
925 981 7.381408 TCGTATTCATTCATTTACGAGACCATC 59.619 37.037 0.00 0.00 40.85 3.51
1097 1173 4.796231 CCGGCCTTCGACGACCAG 62.796 72.222 0.00 0.00 42.43 4.00
1109 1185 3.103911 GACCAGTCGTGCCGTTCG 61.104 66.667 0.00 0.00 0.00 3.95
1145 1228 4.233635 CTCTACCGCCGTCCGTCG 62.234 72.222 0.00 0.00 39.52 5.12
1386 1469 3.374402 ACCGACCGAGTCCTGCTG 61.374 66.667 0.00 0.00 0.00 4.41
1484 1567 3.313257 GATCGCCGACTTCGACGC 61.313 66.667 2.21 0.00 44.54 5.19
1577 1660 2.812178 CAACGTTACCGCCGAGGG 60.812 66.667 0.00 0.00 46.96 4.30
1622 1705 1.685180 CCTCATCCAGTCCTACACCGA 60.685 57.143 0.00 0.00 0.00 4.69
1724 1807 2.899339 GCTCTTCCTCATGCCGGC 60.899 66.667 22.73 22.73 0.00 6.13
1837 1920 0.462047 GGGCATCGTCCGTGAATTCT 60.462 55.000 7.05 0.00 0.00 2.40
1900 1983 4.680237 TGCGCGTGTTCCAGGAGG 62.680 66.667 8.43 0.00 0.00 4.30
1978 2061 2.345991 TGCTACCCAAGGTCGCAC 59.654 61.111 8.74 0.00 46.82 5.34
1979 2062 2.214216 TGCTACCCAAGGTCGCACT 61.214 57.895 8.74 0.00 46.82 4.40
1980 2063 1.448013 GCTACCCAAGGTCGCACTC 60.448 63.158 5.48 0.00 42.82 3.51
1981 2064 1.153823 CTACCCAAGGTCGCACTCG 60.154 63.158 0.00 0.00 37.09 4.18
1982 2065 3.291101 TACCCAAGGTCGCACTCGC 62.291 63.158 0.00 0.00 37.09 5.03
1983 2066 4.680237 CCCAAGGTCGCACTCGCA 62.680 66.667 0.00 0.00 38.40 5.10
1984 2067 3.414700 CCAAGGTCGCACTCGCAC 61.415 66.667 0.00 0.00 38.40 5.34
2016 2099 2.048127 GCGGCGAGAAACACCTCT 60.048 61.111 12.98 0.00 0.00 3.69
2023 2106 1.569479 GAGAAACACCTCTGCCGTGC 61.569 60.000 0.00 0.00 34.45 5.34
2115 2198 4.807039 ATCCGCGGCGTGTACCAC 62.807 66.667 23.51 0.00 0.00 4.16
2125 2208 1.070105 GTGTACCACGCCAACTGGA 59.930 57.895 0.00 0.00 37.39 3.86
2133 2216 2.047179 GCCAACTGGACGGAGACC 60.047 66.667 0.00 0.00 44.11 3.85
2147 2230 1.305549 AGACCGGGGATTACGTGGT 60.306 57.895 6.32 0.00 35.14 4.16
2418 2501 2.573869 CCGAGACAGATGTGCGGT 59.426 61.111 13.05 0.00 37.63 5.68
2443 2526 1.373570 GAAAGGGAGCGACATTGGAG 58.626 55.000 0.00 0.00 0.00 3.86
2444 2527 0.035056 AAAGGGAGCGACATTGGAGG 60.035 55.000 0.00 0.00 0.00 4.30
2454 2537 4.514577 ATTGGAGGTCTCGCGCCG 62.515 66.667 0.00 0.00 0.00 6.46
2484 2567 1.153309 CTGCGAGGATGTGCATGGA 60.153 57.895 0.00 0.00 40.89 3.41
2551 2634 7.923344 GTCTGTGTACATAATATGCTTGAGAGT 59.077 37.037 0.00 0.00 0.00 3.24
2564 2647 5.452078 GCTTGAGAGTGTCTATCTAGCAT 57.548 43.478 17.48 0.00 44.93 3.79
2623 2706 4.419522 ACAAATAGAAACATGGCACGTC 57.580 40.909 0.00 0.00 0.00 4.34
2627 2710 6.037172 ACAAATAGAAACATGGCACGTCTATC 59.963 38.462 0.00 0.45 31.79 2.08
2628 2711 2.906354 AGAAACATGGCACGTCTATCC 58.094 47.619 0.00 0.00 0.00 2.59
2629 2712 2.501723 AGAAACATGGCACGTCTATCCT 59.498 45.455 0.00 0.00 0.00 3.24
2630 2713 2.604046 AACATGGCACGTCTATCCTC 57.396 50.000 0.00 0.00 0.00 3.71
2631 2714 1.485124 ACATGGCACGTCTATCCTCA 58.515 50.000 0.00 0.00 0.00 3.86
2632 2715 1.831106 ACATGGCACGTCTATCCTCAA 59.169 47.619 0.00 0.00 0.00 3.02
2633 2716 2.205074 CATGGCACGTCTATCCTCAAC 58.795 52.381 0.00 0.00 0.00 3.18
2634 2717 0.535335 TGGCACGTCTATCCTCAACC 59.465 55.000 0.00 0.00 0.00 3.77
2635 2718 0.535335 GGCACGTCTATCCTCAACCA 59.465 55.000 0.00 0.00 0.00 3.67
2636 2719 1.066430 GGCACGTCTATCCTCAACCAA 60.066 52.381 0.00 0.00 0.00 3.67
2637 2720 2.614481 GGCACGTCTATCCTCAACCAAA 60.614 50.000 0.00 0.00 0.00 3.28
2638 2721 2.673368 GCACGTCTATCCTCAACCAAAG 59.327 50.000 0.00 0.00 0.00 2.77
2639 2722 2.673368 CACGTCTATCCTCAACCAAAGC 59.327 50.000 0.00 0.00 0.00 3.51
2640 2723 1.927174 CGTCTATCCTCAACCAAAGCG 59.073 52.381 0.00 0.00 0.00 4.68
2641 2724 2.416836 CGTCTATCCTCAACCAAAGCGA 60.417 50.000 0.00 0.00 0.00 4.93
2642 2725 3.190874 GTCTATCCTCAACCAAAGCGAG 58.809 50.000 0.00 0.00 0.00 5.03
2643 2726 3.096852 TCTATCCTCAACCAAAGCGAGA 58.903 45.455 0.00 0.00 0.00 4.04
2644 2727 2.100605 ATCCTCAACCAAAGCGAGAC 57.899 50.000 0.00 0.00 0.00 3.36
2645 2728 0.756294 TCCTCAACCAAAGCGAGACA 59.244 50.000 0.00 0.00 0.00 3.41
2646 2729 0.868406 CCTCAACCAAAGCGAGACAC 59.132 55.000 0.00 0.00 0.00 3.67
2647 2730 1.541233 CCTCAACCAAAGCGAGACACT 60.541 52.381 0.00 0.00 0.00 3.55
2648 2731 1.795286 CTCAACCAAAGCGAGACACTC 59.205 52.381 0.00 0.00 0.00 3.51
2649 2732 0.868406 CAACCAAAGCGAGACACTCC 59.132 55.000 0.00 0.00 0.00 3.85
2650 2733 0.600255 AACCAAAGCGAGACACTCCG 60.600 55.000 0.00 0.00 0.00 4.63
2651 2734 1.738099 CCAAAGCGAGACACTCCGG 60.738 63.158 0.00 0.00 0.00 5.14
2652 2735 1.289066 CAAAGCGAGACACTCCGGA 59.711 57.895 2.93 2.93 0.00 5.14
2653 2736 0.108615 CAAAGCGAGACACTCCGGAT 60.109 55.000 3.57 0.00 0.00 4.18
2654 2737 0.173708 AAAGCGAGACACTCCGGATC 59.826 55.000 3.57 0.00 0.00 3.36
2655 2738 1.994507 AAGCGAGACACTCCGGATCG 61.995 60.000 17.89 17.89 36.51 3.69
2656 2739 2.470362 GCGAGACACTCCGGATCGA 61.470 63.158 24.57 0.00 35.47 3.59
2657 2740 1.352404 CGAGACACTCCGGATCGAC 59.648 63.158 17.42 6.59 35.47 4.20
2658 2741 1.352404 GAGACACTCCGGATCGACG 59.648 63.158 3.57 0.00 0.00 5.12
2659 2742 1.078637 AGACACTCCGGATCGACGA 60.079 57.895 3.57 0.00 35.47 4.20
2660 2743 1.062206 GACACTCCGGATCGACGAC 59.938 63.158 3.57 0.00 35.47 4.34
2661 2744 1.642037 GACACTCCGGATCGACGACA 61.642 60.000 3.57 0.00 35.47 4.35
2662 2745 1.239296 ACACTCCGGATCGACGACAA 61.239 55.000 3.57 0.00 35.47 3.18
2663 2746 0.109458 CACTCCGGATCGACGACAAA 60.109 55.000 3.57 0.00 35.47 2.83
2664 2747 0.170561 ACTCCGGATCGACGACAAAG 59.829 55.000 3.57 0.00 35.47 2.77
2665 2748 1.140407 CTCCGGATCGACGACAAAGC 61.140 60.000 3.57 0.00 35.47 3.51
2666 2749 2.505498 CCGGATCGACGACAAAGCG 61.505 63.158 0.00 0.00 35.47 4.68
2667 2750 2.505498 CGGATCGACGACAAAGCGG 61.505 63.158 0.00 0.00 35.47 5.52
2668 2751 1.445582 GGATCGACGACAAAGCGGT 60.446 57.895 0.00 0.00 35.12 5.68
2669 2752 1.683790 GGATCGACGACAAAGCGGTG 61.684 60.000 0.00 0.00 35.12 4.94
2670 2753 1.683790 GATCGACGACAAAGCGGTGG 61.684 60.000 0.00 0.00 35.12 4.61
2671 2754 3.411351 CGACGACAAAGCGGTGGG 61.411 66.667 0.00 0.00 35.12 4.61
2672 2755 2.029964 GACGACAAAGCGGTGGGA 59.970 61.111 0.00 0.00 35.12 4.37
2673 2756 2.027625 GACGACAAAGCGGTGGGAG 61.028 63.158 0.00 0.00 35.12 4.30
2674 2757 2.742372 CGACAAAGCGGTGGGAGG 60.742 66.667 0.00 0.00 0.00 4.30
2675 2758 2.747686 GACAAAGCGGTGGGAGGA 59.252 61.111 0.00 0.00 0.00 3.71
2676 2759 1.376037 GACAAAGCGGTGGGAGGAG 60.376 63.158 0.00 0.00 0.00 3.69
2677 2760 2.045926 CAAAGCGGTGGGAGGAGG 60.046 66.667 0.00 0.00 0.00 4.30
2678 2761 2.203938 AAAGCGGTGGGAGGAGGA 60.204 61.111 0.00 0.00 0.00 3.71
2679 2762 1.616628 AAAGCGGTGGGAGGAGGAT 60.617 57.895 0.00 0.00 0.00 3.24
2680 2763 0.326238 AAAGCGGTGGGAGGAGGATA 60.326 55.000 0.00 0.00 0.00 2.59
2681 2764 0.760945 AAGCGGTGGGAGGAGGATAG 60.761 60.000 0.00 0.00 0.00 2.08
2682 2765 1.152525 GCGGTGGGAGGAGGATAGA 60.153 63.158 0.00 0.00 0.00 1.98
2683 2766 0.759436 GCGGTGGGAGGAGGATAGAA 60.759 60.000 0.00 0.00 0.00 2.10
2684 2767 2.016905 CGGTGGGAGGAGGATAGAAT 57.983 55.000 0.00 0.00 0.00 2.40
2685 2768 1.620819 CGGTGGGAGGAGGATAGAATG 59.379 57.143 0.00 0.00 0.00 2.67
2686 2769 1.981495 GGTGGGAGGAGGATAGAATGG 59.019 57.143 0.00 0.00 0.00 3.16
2727 2810 4.593864 GCGGCGGATCTGGAGACC 62.594 72.222 9.78 0.00 0.00 3.85
2812 2895 3.271706 TACGACGACAAGGGCACGG 62.272 63.158 0.00 0.00 0.00 4.94
2922 3005 2.450304 ATCCCGGATCCCATGGCA 60.450 61.111 6.09 0.00 0.00 4.92
2978 3061 3.062466 CGTGACAGGCCTCGAGGA 61.062 66.667 35.69 10.23 37.39 3.71
2984 3067 2.752238 AGGCCTCGAGGAGACACG 60.752 66.667 35.69 6.96 46.29 4.49
3034 3117 2.000701 ATCCCACCAGATCCGCCAA 61.001 57.895 0.00 0.00 0.00 4.52
3139 3222 1.065928 GATCCGGGCGTGAGTACAG 59.934 63.158 0.00 0.00 0.00 2.74
3144 3227 1.448013 GGGCGTGAGTACAGAAGCC 60.448 63.158 11.18 11.18 39.67 4.35
3148 3231 1.871039 GCGTGAGTACAGAAGCCAAAA 59.129 47.619 0.00 0.00 0.00 2.44
3173 3256 1.226717 CTCCGCTTGACCTAGACGC 60.227 63.158 0.00 0.00 0.00 5.19
3258 3342 0.679960 GGTGGAGGGGAAAATCGGTG 60.680 60.000 0.00 0.00 0.00 4.94
3298 3382 3.483869 GATTGCGGCCTCCCCTCT 61.484 66.667 0.00 0.00 0.00 3.69
3321 3405 1.825191 CCACCTGATTCCATGGCGG 60.825 63.158 6.96 4.66 0.00 6.13
3323 3407 0.179009 CACCTGATTCCATGGCGGAT 60.179 55.000 6.96 0.34 45.80 4.18
3329 3413 0.251341 ATTCCATGGCGGATAAGGGC 60.251 55.000 6.96 0.00 45.80 5.19
3336 3420 2.669569 CGGATAAGGGCGGGCATG 60.670 66.667 3.27 0.00 0.00 4.06
3340 3424 0.251341 GATAAGGGCGGGCATGGATT 60.251 55.000 3.27 0.00 0.00 3.01
3341 3425 0.251341 ATAAGGGCGGGCATGGATTC 60.251 55.000 3.27 0.00 0.00 2.52
3342 3426 2.351924 TAAGGGCGGGCATGGATTCC 62.352 60.000 3.27 0.00 0.00 3.01
3344 3428 4.875713 GGCGGGCATGGATTCCGT 62.876 66.667 0.00 0.00 44.97 4.69
3345 3429 3.585990 GCGGGCATGGATTCCGTG 61.586 66.667 18.93 18.93 44.97 4.94
3346 3430 2.901840 CGGGCATGGATTCCGTGG 60.902 66.667 23.27 6.22 40.61 4.94
3349 3433 2.513666 GCATGGATTCCGTGGCGA 60.514 61.111 23.27 0.00 40.61 5.54
3350 3434 2.823829 GCATGGATTCCGTGGCGAC 61.824 63.158 23.27 5.89 40.61 5.19
3351 3435 2.180204 CATGGATTCCGTGGCGACC 61.180 63.158 16.00 0.00 36.92 4.79
3352 3436 3.733344 ATGGATTCCGTGGCGACCG 62.733 63.158 0.00 0.00 0.00 4.79
3373 3457 2.202932 CGAGGGATTCGGTGCTGG 60.203 66.667 0.00 0.00 45.54 4.85
3374 3458 2.990479 GAGGGATTCGGTGCTGGT 59.010 61.111 0.00 0.00 0.00 4.00
3375 3459 1.153349 GAGGGATTCGGTGCTGGTC 60.153 63.158 0.00 0.00 0.00 4.02
3376 3460 1.899437 GAGGGATTCGGTGCTGGTCA 61.899 60.000 0.00 0.00 0.00 4.02
3377 3461 1.450312 GGGATTCGGTGCTGGTCAG 60.450 63.158 0.00 0.00 0.00 3.51
3378 3462 1.450312 GGATTCGGTGCTGGTCAGG 60.450 63.158 0.00 0.00 0.00 3.86
3379 3463 2.045926 ATTCGGTGCTGGTCAGGC 60.046 61.111 0.00 0.00 0.00 4.85
3380 3464 3.958147 ATTCGGTGCTGGTCAGGCG 62.958 63.158 0.00 0.00 0.00 5.52
3433 3517 3.918220 GCGCTTCGATCGTGGCAG 61.918 66.667 25.00 19.88 0.00 4.85
3434 3518 3.918220 CGCTTCGATCGTGGCAGC 61.918 66.667 25.00 20.72 0.00 5.25
3435 3519 3.918220 GCTTCGATCGTGGCAGCG 61.918 66.667 22.43 0.00 0.00 5.18
3436 3520 3.918220 CTTCGATCGTGGCAGCGC 61.918 66.667 15.94 0.00 0.00 5.92
3448 3532 4.104633 CAGCGCGACGACGTCAAC 62.105 66.667 26.26 16.71 41.98 3.18
3449 3533 4.617486 AGCGCGACGACGTCAACA 62.617 61.111 26.26 0.00 41.98 3.33
3450 3534 3.684315 GCGCGACGACGTCAACAA 61.684 61.111 26.26 0.00 41.98 2.83
3451 3535 2.164673 CGCGACGACGTCAACAAC 59.835 61.111 26.26 9.74 41.98 3.32
3452 3536 2.569794 CGCGACGACGTCAACAACA 61.570 57.895 26.26 0.00 41.98 3.33
3453 3537 1.632120 GCGACGACGTCAACAACAA 59.368 52.632 26.26 0.00 41.98 2.83
3454 3538 0.649628 GCGACGACGTCAACAACAAC 60.650 55.000 26.26 0.00 41.98 3.32
3455 3539 0.379760 CGACGACGTCAACAACAACG 60.380 55.000 26.26 7.14 44.22 4.10
3456 3540 0.043652 GACGACGTCAACAACAACGG 60.044 55.000 22.66 0.00 42.99 4.44
3457 3541 1.367195 CGACGTCAACAACAACGGC 60.367 57.895 17.16 0.00 43.45 5.68
3458 3542 1.367195 GACGTCAACAACAACGGCG 60.367 57.895 11.55 4.80 42.99 6.46
3459 3543 2.052590 CGTCAACAACAACGGCGG 60.053 61.111 13.24 0.00 35.32 6.13
3460 3544 2.353030 GTCAACAACAACGGCGGC 60.353 61.111 13.24 0.00 0.00 6.53
3461 3545 2.824489 TCAACAACAACGGCGGCA 60.824 55.556 13.24 0.00 0.00 5.69
3462 3546 2.103143 CAACAACAACGGCGGCAA 59.897 55.556 13.24 0.00 0.00 4.52
3463 3547 1.943693 CAACAACAACGGCGGCAAG 60.944 57.895 13.24 0.00 0.00 4.01
3464 3548 2.411504 AACAACAACGGCGGCAAGT 61.412 52.632 13.24 0.25 0.00 3.16
3465 3549 2.051345 CAACAACGGCGGCAAGTC 60.051 61.111 13.24 0.00 0.00 3.01
3466 3550 3.284449 AACAACGGCGGCAAGTCC 61.284 61.111 13.24 0.00 0.00 3.85
3467 3551 4.555709 ACAACGGCGGCAAGTCCA 62.556 61.111 13.24 0.00 34.01 4.02
3468 3552 4.025401 CAACGGCGGCAAGTCCAC 62.025 66.667 13.24 0.00 34.01 4.02
3473 3557 4.643387 GCGGCAAGTCCACCCACT 62.643 66.667 0.00 0.00 34.01 4.00
3474 3558 2.358737 CGGCAAGTCCACCCACTC 60.359 66.667 0.00 0.00 34.01 3.51
3475 3559 2.358737 GGCAAGTCCACCCACTCG 60.359 66.667 0.00 0.00 34.01 4.18
3476 3560 2.358737 GCAAGTCCACCCACTCGG 60.359 66.667 0.00 0.00 37.81 4.63
3477 3561 2.879233 GCAAGTCCACCCACTCGGA 61.879 63.158 0.00 0.00 34.64 4.55
3481 3565 2.123208 TCCACCCACTCGGACACA 60.123 61.111 0.00 0.00 34.64 3.72
3482 3566 1.535444 TCCACCCACTCGGACACAT 60.535 57.895 0.00 0.00 34.64 3.21
3483 3567 1.079127 CCACCCACTCGGACACATC 60.079 63.158 0.00 0.00 34.64 3.06
3484 3568 1.446099 CACCCACTCGGACACATCG 60.446 63.158 0.00 0.00 34.64 3.84
3485 3569 2.184322 CCCACTCGGACACATCGG 59.816 66.667 0.00 0.00 0.00 4.18
3486 3570 2.184322 CCACTCGGACACATCGGG 59.816 66.667 0.00 0.00 0.00 5.14
3487 3571 2.646175 CCACTCGGACACATCGGGT 61.646 63.158 0.00 0.00 42.62 5.28
3488 3572 1.317431 CCACTCGGACACATCGGGTA 61.317 60.000 0.00 0.00 39.55 3.69
3489 3573 0.179145 CACTCGGACACATCGGGTAC 60.179 60.000 0.00 0.00 39.55 3.34
3502 3586 4.509737 GGTACCTCGCGCTGGGAC 62.510 72.222 20.46 20.46 37.69 4.46
3503 3587 4.849329 GTACCTCGCGCTGGGACG 62.849 72.222 19.73 0.00 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.197721 CTTGACTAGCAAACAAGCCCG 59.802 52.381 0.00 0.00 35.74 6.13
4 5 6.725246 TCTTTAACTTGACTAGCAAACAAGC 58.275 36.000 14.83 0.00 42.93 4.01
7 8 8.500753 TCTTTCTTTAACTTGACTAGCAAACA 57.499 30.769 0.00 0.00 35.74 2.83
8 9 9.387123 CATCTTTCTTTAACTTGACTAGCAAAC 57.613 33.333 0.00 0.00 35.74 2.93
9 10 9.120538 ACATCTTTCTTTAACTTGACTAGCAAA 57.879 29.630 0.00 0.00 35.74 3.68
10 11 8.559536 CACATCTTTCTTTAACTTGACTAGCAA 58.440 33.333 0.00 0.00 34.73 3.91
12 13 8.089115 ACACATCTTTCTTTAACTTGACTAGC 57.911 34.615 0.00 0.00 0.00 3.42
13 14 9.261180 TGACACATCTTTCTTTAACTTGACTAG 57.739 33.333 0.00 0.00 0.00 2.57
14 15 9.778741 ATGACACATCTTTCTTTAACTTGACTA 57.221 29.630 0.00 0.00 0.00 2.59
15 16 8.682936 ATGACACATCTTTCTTTAACTTGACT 57.317 30.769 0.00 0.00 0.00 3.41
16 17 8.559536 TGATGACACATCTTTCTTTAACTTGAC 58.440 33.333 11.98 0.00 0.00 3.18
17 18 8.675705 TGATGACACATCTTTCTTTAACTTGA 57.324 30.769 11.98 0.00 0.00 3.02
18 19 8.777413 TCTGATGACACATCTTTCTTTAACTTG 58.223 33.333 11.98 0.00 0.00 3.16
19 20 8.908786 TCTGATGACACATCTTTCTTTAACTT 57.091 30.769 11.98 0.00 0.00 2.66
20 21 9.160496 GATCTGATGACACATCTTTCTTTAACT 57.840 33.333 11.98 0.00 0.00 2.24
21 22 8.939929 TGATCTGATGACACATCTTTCTTTAAC 58.060 33.333 11.98 0.00 0.00 2.01
22 23 9.506018 TTGATCTGATGACACATCTTTCTTTAA 57.494 29.630 11.98 0.00 0.00 1.52
23 24 9.506018 TTTGATCTGATGACACATCTTTCTTTA 57.494 29.630 11.98 0.00 0.00 1.85
24 25 7.991084 TTGATCTGATGACACATCTTTCTTT 57.009 32.000 11.98 0.00 0.00 2.52
25 26 7.664731 ACTTTGATCTGATGACACATCTTTCTT 59.335 33.333 11.98 0.00 0.00 2.52
26 27 7.119407 CACTTTGATCTGATGACACATCTTTCT 59.881 37.037 11.98 0.00 0.00 2.52
27 28 7.094890 ACACTTTGATCTGATGACACATCTTTC 60.095 37.037 11.98 7.40 0.00 2.62
28 29 6.713903 ACACTTTGATCTGATGACACATCTTT 59.286 34.615 11.98 0.00 0.00 2.52
29 30 6.236409 ACACTTTGATCTGATGACACATCTT 58.764 36.000 11.98 0.00 0.00 2.40
30 31 5.802465 ACACTTTGATCTGATGACACATCT 58.198 37.500 11.98 0.00 0.00 2.90
31 32 5.640783 TGACACTTTGATCTGATGACACATC 59.359 40.000 0.00 4.98 0.00 3.06
32 33 5.554070 TGACACTTTGATCTGATGACACAT 58.446 37.500 0.00 0.00 0.00 3.21
33 34 4.959723 TGACACTTTGATCTGATGACACA 58.040 39.130 0.00 0.00 0.00 3.72
34 35 4.391216 CCTGACACTTTGATCTGATGACAC 59.609 45.833 0.00 0.00 0.00 3.67
35 36 4.284234 TCCTGACACTTTGATCTGATGACA 59.716 41.667 0.00 0.00 0.00 3.58
36 37 4.825422 TCCTGACACTTTGATCTGATGAC 58.175 43.478 0.00 0.00 0.00 3.06
37 38 5.488262 TTCCTGACACTTTGATCTGATGA 57.512 39.130 0.00 0.00 0.00 2.92
38 39 6.206243 ACTTTTCCTGACACTTTGATCTGATG 59.794 38.462 0.00 0.00 0.00 3.07
39 40 6.206243 CACTTTTCCTGACACTTTGATCTGAT 59.794 38.462 0.00 0.00 0.00 2.90
40 41 5.528690 CACTTTTCCTGACACTTTGATCTGA 59.471 40.000 0.00 0.00 0.00 3.27
41 42 5.297776 ACACTTTTCCTGACACTTTGATCTG 59.702 40.000 0.00 0.00 0.00 2.90
42 43 5.297776 CACACTTTTCCTGACACTTTGATCT 59.702 40.000 0.00 0.00 0.00 2.75
43 44 5.066505 ACACACTTTTCCTGACACTTTGATC 59.933 40.000 0.00 0.00 0.00 2.92
44 45 4.949856 ACACACTTTTCCTGACACTTTGAT 59.050 37.500 0.00 0.00 0.00 2.57
45 46 4.331968 ACACACTTTTCCTGACACTTTGA 58.668 39.130 0.00 0.00 0.00 2.69
46 47 4.155826 TGACACACTTTTCCTGACACTTTG 59.844 41.667 0.00 0.00 0.00 2.77
47 48 4.331968 TGACACACTTTTCCTGACACTTT 58.668 39.130 0.00 0.00 0.00 2.66
48 49 3.950397 TGACACACTTTTCCTGACACTT 58.050 40.909 0.00 0.00 0.00 3.16
49 50 3.627395 TGACACACTTTTCCTGACACT 57.373 42.857 0.00 0.00 0.00 3.55
50 51 7.667043 TTATATGACACACTTTTCCTGACAC 57.333 36.000 0.00 0.00 0.00 3.67
51 52 8.100164 TGATTATATGACACACTTTTCCTGACA 58.900 33.333 0.00 0.00 0.00 3.58
52 53 8.492673 TGATTATATGACACACTTTTCCTGAC 57.507 34.615 0.00 0.00 0.00 3.51
53 54 9.685276 ATTGATTATATGACACACTTTTCCTGA 57.315 29.630 0.00 0.00 0.00 3.86
59 60 9.793252 GAGCAAATTGATTATATGACACACTTT 57.207 29.630 0.00 0.00 0.00 2.66
60 61 9.182214 AGAGCAAATTGATTATATGACACACTT 57.818 29.630 0.00 0.00 0.00 3.16
61 62 8.743085 AGAGCAAATTGATTATATGACACACT 57.257 30.769 0.00 0.00 0.00 3.55
63 64 9.836864 ACTAGAGCAAATTGATTATATGACACA 57.163 29.630 0.00 0.00 0.00 3.72
73 74 8.963725 TCATCATCAAACTAGAGCAAATTGATT 58.036 29.630 0.00 0.00 38.34 2.57
74 75 8.404000 GTCATCATCAAACTAGAGCAAATTGAT 58.596 33.333 0.00 0.00 40.37 2.57
75 76 7.413328 CGTCATCATCAAACTAGAGCAAATTGA 60.413 37.037 0.00 0.00 34.80 2.57
76 77 6.685828 CGTCATCATCAAACTAGAGCAAATTG 59.314 38.462 0.00 0.00 0.00 2.32
77 78 6.595326 TCGTCATCATCAAACTAGAGCAAATT 59.405 34.615 0.00 0.00 0.00 1.82
78 79 6.108687 TCGTCATCATCAAACTAGAGCAAAT 58.891 36.000 0.00 0.00 0.00 2.32
79 80 5.478407 TCGTCATCATCAAACTAGAGCAAA 58.522 37.500 0.00 0.00 0.00 3.68
80 81 5.072040 TCGTCATCATCAAACTAGAGCAA 57.928 39.130 0.00 0.00 0.00 3.91
81 82 4.718940 TCGTCATCATCAAACTAGAGCA 57.281 40.909 0.00 0.00 0.00 4.26
82 83 4.027295 CGTTCGTCATCATCAAACTAGAGC 60.027 45.833 0.00 0.00 0.00 4.09
83 84 4.500837 CCGTTCGTCATCATCAAACTAGAG 59.499 45.833 0.00 0.00 0.00 2.43
84 85 4.082408 ACCGTTCGTCATCATCAAACTAGA 60.082 41.667 0.00 0.00 0.00 2.43
85 86 4.174009 ACCGTTCGTCATCATCAAACTAG 58.826 43.478 0.00 0.00 0.00 2.57
86 87 4.182693 ACCGTTCGTCATCATCAAACTA 57.817 40.909 0.00 0.00 0.00 2.24
87 88 3.040147 ACCGTTCGTCATCATCAAACT 57.960 42.857 0.00 0.00 0.00 2.66
88 89 3.241552 CGTACCGTTCGTCATCATCAAAC 60.242 47.826 0.00 0.00 0.00 2.93
89 90 2.918600 CGTACCGTTCGTCATCATCAAA 59.081 45.455 0.00 0.00 0.00 2.69
90 91 2.521996 CGTACCGTTCGTCATCATCAA 58.478 47.619 0.00 0.00 0.00 2.57
91 92 1.202211 CCGTACCGTTCGTCATCATCA 60.202 52.381 0.00 0.00 0.00 3.07
92 93 1.474017 CCGTACCGTTCGTCATCATC 58.526 55.000 0.00 0.00 0.00 2.92
93 94 0.101759 CCCGTACCGTTCGTCATCAT 59.898 55.000 0.00 0.00 0.00 2.45
94 95 1.507630 CCCGTACCGTTCGTCATCA 59.492 57.895 0.00 0.00 0.00 3.07
95 96 1.226773 CCCCGTACCGTTCGTCATC 60.227 63.158 0.00 0.00 0.00 2.92
96 97 1.039233 ATCCCCGTACCGTTCGTCAT 61.039 55.000 0.00 0.00 0.00 3.06
97 98 1.250154 AATCCCCGTACCGTTCGTCA 61.250 55.000 0.00 0.00 0.00 4.35
98 99 0.738389 TAATCCCCGTACCGTTCGTC 59.262 55.000 0.00 0.00 0.00 4.20
99 100 0.740737 CTAATCCCCGTACCGTTCGT 59.259 55.000 0.00 0.00 0.00 3.85
100 101 1.024271 TCTAATCCCCGTACCGTTCG 58.976 55.000 0.00 0.00 0.00 3.95
101 102 2.351157 CGATCTAATCCCCGTACCGTTC 60.351 54.545 0.00 0.00 0.00 3.95
102 103 1.610522 CGATCTAATCCCCGTACCGTT 59.389 52.381 0.00 0.00 0.00 4.44
103 104 1.242076 CGATCTAATCCCCGTACCGT 58.758 55.000 0.00 0.00 0.00 4.83
104 105 0.524862 CCGATCTAATCCCCGTACCG 59.475 60.000 0.00 0.00 0.00 4.02
105 106 1.625511 ACCGATCTAATCCCCGTACC 58.374 55.000 0.00 0.00 0.00 3.34
106 107 2.624838 TCAACCGATCTAATCCCCGTAC 59.375 50.000 0.00 0.00 0.00 3.67
107 108 2.948115 TCAACCGATCTAATCCCCGTA 58.052 47.619 0.00 0.00 0.00 4.02
108 109 1.784358 TCAACCGATCTAATCCCCGT 58.216 50.000 0.00 0.00 0.00 5.28
109 110 3.402628 AATCAACCGATCTAATCCCCG 57.597 47.619 0.00 0.00 0.00 5.73
110 111 5.238583 CACTAATCAACCGATCTAATCCCC 58.761 45.833 0.00 0.00 0.00 4.81
111 112 5.238583 CCACTAATCAACCGATCTAATCCC 58.761 45.833 0.00 0.00 0.00 3.85
112 113 4.691216 GCCACTAATCAACCGATCTAATCC 59.309 45.833 0.00 0.00 0.00 3.01
113 114 5.542779 AGCCACTAATCAACCGATCTAATC 58.457 41.667 0.00 0.00 0.00 1.75
114 115 5.552870 AGCCACTAATCAACCGATCTAAT 57.447 39.130 0.00 0.00 0.00 1.73
115 116 5.116180 CAAGCCACTAATCAACCGATCTAA 58.884 41.667 0.00 0.00 0.00 2.10
116 117 4.161565 ACAAGCCACTAATCAACCGATCTA 59.838 41.667 0.00 0.00 0.00 1.98
117 118 3.055094 ACAAGCCACTAATCAACCGATCT 60.055 43.478 0.00 0.00 0.00 2.75
118 119 3.270877 ACAAGCCACTAATCAACCGATC 58.729 45.455 0.00 0.00 0.00 3.69
119 120 3.350219 ACAAGCCACTAATCAACCGAT 57.650 42.857 0.00 0.00 0.00 4.18
120 121 2.811431 CAACAAGCCACTAATCAACCGA 59.189 45.455 0.00 0.00 0.00 4.69
121 122 2.668279 GCAACAAGCCACTAATCAACCG 60.668 50.000 0.00 0.00 37.23 4.44
122 123 2.668279 CGCAACAAGCCACTAATCAACC 60.668 50.000 0.00 0.00 41.38 3.77
123 124 2.031157 ACGCAACAAGCCACTAATCAAC 60.031 45.455 0.00 0.00 41.38 3.18
124 125 2.226330 ACGCAACAAGCCACTAATCAA 58.774 42.857 0.00 0.00 41.38 2.57
125 126 1.890876 ACGCAACAAGCCACTAATCA 58.109 45.000 0.00 0.00 41.38 2.57
126 127 2.989422 AACGCAACAAGCCACTAATC 57.011 45.000 0.00 0.00 41.38 1.75
127 128 3.057806 GGTTAACGCAACAAGCCACTAAT 60.058 43.478 0.00 0.00 41.38 1.73
128 129 2.291190 GGTTAACGCAACAAGCCACTAA 59.709 45.455 0.00 0.00 41.38 2.24
129 130 1.874872 GGTTAACGCAACAAGCCACTA 59.125 47.619 0.00 0.00 41.38 2.74
130 131 0.666374 GGTTAACGCAACAAGCCACT 59.334 50.000 0.00 0.00 41.38 4.00
131 132 0.382515 TGGTTAACGCAACAAGCCAC 59.617 50.000 0.00 0.00 41.38 5.01
132 133 0.382515 GTGGTTAACGCAACAAGCCA 59.617 50.000 0.00 0.00 41.38 4.75
133 134 0.382515 TGTGGTTAACGCAACAAGCC 59.617 50.000 0.00 0.00 41.38 4.35
134 135 2.415697 ATGTGGTTAACGCAACAAGC 57.584 45.000 10.31 0.00 43.88 4.01
135 136 5.106712 ACATCTATGTGGTTAACGCAACAAG 60.107 40.000 10.31 9.37 43.88 3.16
136 137 4.757657 ACATCTATGTGGTTAACGCAACAA 59.242 37.500 10.31 0.00 43.88 2.83
137 138 4.320023 ACATCTATGTGGTTAACGCAACA 58.680 39.130 9.09 9.09 43.88 3.33
138 139 4.939509 ACATCTATGTGGTTAACGCAAC 57.060 40.909 0.00 0.00 43.88 4.17
139 140 5.950758 AAACATCTATGTGGTTAACGCAA 57.049 34.783 0.00 0.00 43.88 4.85
140 141 5.950758 AAAACATCTATGTGGTTAACGCA 57.049 34.783 0.00 1.79 44.94 5.24
141 142 7.178074 GTCTAAAACATCTATGTGGTTAACGC 58.822 38.462 0.00 0.00 41.61 4.84
142 143 7.201582 GGGTCTAAAACATCTATGTGGTTAACG 60.202 40.741 0.00 0.00 41.61 3.18
143 144 7.827729 AGGGTCTAAAACATCTATGTGGTTAAC 59.172 37.037 0.00 0.00 41.61 2.01
144 145 7.924541 AGGGTCTAAAACATCTATGTGGTTAA 58.075 34.615 0.00 0.00 41.61 2.01
145 146 7.504926 AGGGTCTAAAACATCTATGTGGTTA 57.495 36.000 0.00 0.00 41.61 2.85
146 147 6.388619 AGGGTCTAAAACATCTATGTGGTT 57.611 37.500 0.00 0.00 41.61 3.67
147 148 6.180472 CAAGGGTCTAAAACATCTATGTGGT 58.820 40.000 0.00 0.00 41.61 4.16
148 149 5.590259 CCAAGGGTCTAAAACATCTATGTGG 59.410 44.000 0.00 0.00 41.61 4.17
149 150 6.414732 TCCAAGGGTCTAAAACATCTATGTG 58.585 40.000 0.00 0.00 41.61 3.21
150 151 6.636454 TCCAAGGGTCTAAAACATCTATGT 57.364 37.500 0.00 0.00 44.20 2.29
151 152 6.425114 CGATCCAAGGGTCTAAAACATCTATG 59.575 42.308 0.00 0.00 0.00 2.23
152 153 6.464465 CCGATCCAAGGGTCTAAAACATCTAT 60.464 42.308 0.00 0.00 0.00 1.98
153 154 5.163343 CCGATCCAAGGGTCTAAAACATCTA 60.163 44.000 0.00 0.00 0.00 1.98
154 155 4.384208 CCGATCCAAGGGTCTAAAACATCT 60.384 45.833 0.00 0.00 0.00 2.90
155 156 3.877508 CCGATCCAAGGGTCTAAAACATC 59.122 47.826 0.00 0.00 0.00 3.06
156 157 3.886123 CCGATCCAAGGGTCTAAAACAT 58.114 45.455 0.00 0.00 0.00 2.71
157 158 2.617021 GCCGATCCAAGGGTCTAAAACA 60.617 50.000 0.00 0.00 0.00 2.83
158 159 2.014857 GCCGATCCAAGGGTCTAAAAC 58.985 52.381 0.00 0.00 0.00 2.43
159 160 1.913419 AGCCGATCCAAGGGTCTAAAA 59.087 47.619 0.00 0.00 33.71 1.52
160 161 1.580059 AGCCGATCCAAGGGTCTAAA 58.420 50.000 0.00 0.00 33.71 1.85
161 162 2.091499 TCTAGCCGATCCAAGGGTCTAA 60.091 50.000 0.00 0.00 40.37 2.10
162 163 1.497716 TCTAGCCGATCCAAGGGTCTA 59.502 52.381 0.00 0.00 40.37 2.59
163 164 0.261991 TCTAGCCGATCCAAGGGTCT 59.738 55.000 0.00 0.00 40.37 3.85
164 165 1.343069 ATCTAGCCGATCCAAGGGTC 58.657 55.000 0.00 0.00 40.37 4.46
165 166 2.696526 TATCTAGCCGATCCAAGGGT 57.303 50.000 0.00 0.00 42.74 4.34
166 167 3.665190 GTTTATCTAGCCGATCCAAGGG 58.335 50.000 0.00 0.00 33.48 3.95
167 168 3.318017 CGTTTATCTAGCCGATCCAAGG 58.682 50.000 0.00 0.00 33.48 3.61
168 169 3.243771 ACCGTTTATCTAGCCGATCCAAG 60.244 47.826 0.00 0.00 33.48 3.61
169 170 2.696707 ACCGTTTATCTAGCCGATCCAA 59.303 45.455 0.00 0.00 33.48 3.53
170 171 2.313317 ACCGTTTATCTAGCCGATCCA 58.687 47.619 0.00 0.00 33.48 3.41
171 172 3.005578 AGAACCGTTTATCTAGCCGATCC 59.994 47.826 0.00 0.00 33.48 3.36
172 173 3.982058 CAGAACCGTTTATCTAGCCGATC 59.018 47.826 0.00 0.00 33.48 3.69
173 174 3.243771 CCAGAACCGTTTATCTAGCCGAT 60.244 47.826 0.00 0.00 36.11 4.18
174 175 2.100252 CCAGAACCGTTTATCTAGCCGA 59.900 50.000 0.00 0.00 0.00 5.54
175 176 2.159142 ACCAGAACCGTTTATCTAGCCG 60.159 50.000 0.00 0.00 0.00 5.52
176 177 3.538634 ACCAGAACCGTTTATCTAGCC 57.461 47.619 0.00 0.00 0.00 3.93
177 178 7.407337 CAAATAACCAGAACCGTTTATCTAGC 58.593 38.462 0.00 0.00 0.00 3.42
178 179 7.767198 TCCAAATAACCAGAACCGTTTATCTAG 59.233 37.037 0.00 0.00 0.00 2.43
179 180 7.622713 TCCAAATAACCAGAACCGTTTATCTA 58.377 34.615 0.00 0.00 0.00 1.98
180 181 6.478129 TCCAAATAACCAGAACCGTTTATCT 58.522 36.000 0.00 0.00 0.00 1.98
181 182 6.746745 TCCAAATAACCAGAACCGTTTATC 57.253 37.500 0.00 0.00 0.00 1.75
182 183 7.067008 CAGATCCAAATAACCAGAACCGTTTAT 59.933 37.037 0.00 0.00 0.00 1.40
183 184 6.373216 CAGATCCAAATAACCAGAACCGTTTA 59.627 38.462 0.00 0.00 0.00 2.01
184 185 5.183140 CAGATCCAAATAACCAGAACCGTTT 59.817 40.000 0.00 0.00 0.00 3.60
185 186 4.700213 CAGATCCAAATAACCAGAACCGTT 59.300 41.667 0.00 0.00 0.00 4.44
186 187 4.261801 CAGATCCAAATAACCAGAACCGT 58.738 43.478 0.00 0.00 0.00 4.83
187 188 3.065371 GCAGATCCAAATAACCAGAACCG 59.935 47.826 0.00 0.00 0.00 4.44
188 189 3.381590 GGCAGATCCAAATAACCAGAACC 59.618 47.826 0.00 0.00 34.01 3.62
189 190 3.381590 GGGCAGATCCAAATAACCAGAAC 59.618 47.826 0.00 0.00 36.21 3.01
190 191 3.627237 GGGGCAGATCCAAATAACCAGAA 60.627 47.826 0.00 0.00 36.21 3.02
191 192 2.091885 GGGGCAGATCCAAATAACCAGA 60.092 50.000 0.00 0.00 36.21 3.86
192 193 2.091665 AGGGGCAGATCCAAATAACCAG 60.092 50.000 0.00 0.00 36.21 4.00
193 194 1.929494 AGGGGCAGATCCAAATAACCA 59.071 47.619 0.00 0.00 36.21 3.67
194 195 2.755952 AGGGGCAGATCCAAATAACC 57.244 50.000 0.00 0.00 36.21 2.85
195 196 4.281657 AGAAAGGGGCAGATCCAAATAAC 58.718 43.478 0.00 0.00 36.21 1.89
196 197 4.608170 AGAAAGGGGCAGATCCAAATAA 57.392 40.909 0.00 0.00 36.21 1.40
197 198 4.230502 AGAAGAAAGGGGCAGATCCAAATA 59.769 41.667 0.00 0.00 36.21 1.40
198 199 3.012161 AGAAGAAAGGGGCAGATCCAAAT 59.988 43.478 0.00 0.00 36.21 2.32
199 200 2.379907 AGAAGAAAGGGGCAGATCCAAA 59.620 45.455 0.00 0.00 36.21 3.28
200 201 1.995542 AGAAGAAAGGGGCAGATCCAA 59.004 47.619 0.00 0.00 36.21 3.53
201 202 1.673767 AGAAGAAAGGGGCAGATCCA 58.326 50.000 0.00 0.00 36.21 3.41
202 203 2.816777 AAGAAGAAAGGGGCAGATCC 57.183 50.000 0.00 0.00 0.00 3.36
203 204 6.782082 ATAAAAAGAAGAAAGGGGCAGATC 57.218 37.500 0.00 0.00 0.00 2.75
204 205 6.836007 CCTATAAAAAGAAGAAAGGGGCAGAT 59.164 38.462 0.00 0.00 0.00 2.90
205 206 6.187682 CCTATAAAAAGAAGAAAGGGGCAGA 58.812 40.000 0.00 0.00 0.00 4.26
206 207 5.360999 CCCTATAAAAAGAAGAAAGGGGCAG 59.639 44.000 0.00 0.00 38.84 4.85
207 208 5.269189 CCCTATAAAAAGAAGAAAGGGGCA 58.731 41.667 0.00 0.00 38.84 5.36
208 209 5.854010 CCCTATAAAAAGAAGAAAGGGGC 57.146 43.478 0.00 0.00 38.84 5.80
210 211 7.640313 ACTACCCCTATAAAAAGAAGAAAGGG 58.360 38.462 0.00 0.00 41.62 3.95
211 212 9.833917 CTACTACCCCTATAAAAAGAAGAAAGG 57.166 37.037 0.00 0.00 0.00 3.11
218 219 9.372189 GGTGTATCTACTACCCCTATAAAAAGA 57.628 37.037 0.00 0.00 0.00 2.52
219 220 8.302438 CGGTGTATCTACTACCCCTATAAAAAG 58.698 40.741 0.00 0.00 0.00 2.27
220 221 8.004215 TCGGTGTATCTACTACCCCTATAAAAA 58.996 37.037 0.00 0.00 0.00 1.94
221 222 7.526041 TCGGTGTATCTACTACCCCTATAAAA 58.474 38.462 0.00 0.00 0.00 1.52
222 223 7.090319 TCGGTGTATCTACTACCCCTATAAA 57.910 40.000 0.00 0.00 0.00 1.40
223 224 6.702449 TCGGTGTATCTACTACCCCTATAA 57.298 41.667 0.00 0.00 0.00 0.98
224 225 6.126652 GGATCGGTGTATCTACTACCCCTATA 60.127 46.154 0.00 0.00 0.00 1.31
225 226 5.339861 GGATCGGTGTATCTACTACCCCTAT 60.340 48.000 0.00 0.00 0.00 2.57
226 227 4.018960 GGATCGGTGTATCTACTACCCCTA 60.019 50.000 0.00 0.00 0.00 3.53
227 228 3.245193 GGATCGGTGTATCTACTACCCCT 60.245 52.174 0.00 0.00 0.00 4.79
228 229 3.087781 GGATCGGTGTATCTACTACCCC 58.912 54.545 0.00 0.00 0.00 4.95
229 230 3.505293 GTGGATCGGTGTATCTACTACCC 59.495 52.174 0.00 0.00 35.22 3.69
230 231 4.396522 AGTGGATCGGTGTATCTACTACC 58.603 47.826 1.54 0.00 43.48 3.18
231 232 4.455190 GGAGTGGATCGGTGTATCTACTAC 59.545 50.000 3.26 0.56 44.78 2.73
232 233 4.103627 TGGAGTGGATCGGTGTATCTACTA 59.896 45.833 3.26 0.00 44.78 1.82
233 234 3.117625 TGGAGTGGATCGGTGTATCTACT 60.118 47.826 2.93 2.93 46.66 2.57
234 235 3.220110 TGGAGTGGATCGGTGTATCTAC 58.780 50.000 0.00 0.00 37.56 2.59
235 236 3.588210 TGGAGTGGATCGGTGTATCTA 57.412 47.619 0.00 0.00 0.00 1.98
236 237 2.454336 TGGAGTGGATCGGTGTATCT 57.546 50.000 0.00 0.00 0.00 1.98
237 238 2.894126 AGATGGAGTGGATCGGTGTATC 59.106 50.000 0.00 0.00 0.00 2.24
249 250 2.002586 CAGGTAAACGCAGATGGAGTG 58.997 52.381 0.00 0.00 0.00 3.51
251 252 1.207089 TCCAGGTAAACGCAGATGGAG 59.793 52.381 0.00 0.00 33.11 3.86
252 253 1.066430 GTCCAGGTAAACGCAGATGGA 60.066 52.381 0.00 0.00 34.54 3.41
254 255 2.002586 CAGTCCAGGTAAACGCAGATG 58.997 52.381 0.00 0.00 0.00 2.90
255 256 1.623811 ACAGTCCAGGTAAACGCAGAT 59.376 47.619 0.00 0.00 0.00 2.90
256 257 1.045407 ACAGTCCAGGTAAACGCAGA 58.955 50.000 0.00 0.00 0.00 4.26
257 258 1.148310 CACAGTCCAGGTAAACGCAG 58.852 55.000 0.00 0.00 0.00 5.18
258 259 0.466543 ACACAGTCCAGGTAAACGCA 59.533 50.000 0.00 0.00 0.00 5.24
259 260 2.443887 TACACAGTCCAGGTAAACGC 57.556 50.000 0.00 0.00 0.00 4.84
270 271 2.076863 GTGGTGCCATCTTACACAGTC 58.923 52.381 0.00 0.00 38.57 3.51
284 285 3.434319 CGCTGATGGTGGTGGTGC 61.434 66.667 0.00 0.00 0.00 5.01
287 288 3.434319 GTGCGCTGATGGTGGTGG 61.434 66.667 9.73 0.00 0.00 4.61
290 291 2.512286 ATCGTGCGCTGATGGTGG 60.512 61.111 9.73 0.00 0.00 4.61
297 298 2.804421 TTTATGTTCATCGTGCGCTG 57.196 45.000 9.73 0.40 0.00 5.18
304 305 9.892987 GCTATCGAGATTTATTTATGTTCATCG 57.107 33.333 0.00 0.00 0.00 3.84
313 314 9.486857 CGAGATAACGCTATCGAGATTTATTTA 57.513 33.333 0.34 0.00 39.23 1.40
315 316 7.693120 GTCGAGATAACGCTATCGAGATTTATT 59.307 37.037 8.67 0.00 44.07 1.40
317 318 6.146673 TGTCGAGATAACGCTATCGAGATTTA 59.853 38.462 8.67 0.00 44.07 1.40
331 336 3.243336 GGCACGGATATGTCGAGATAAC 58.757 50.000 6.34 3.83 0.00 1.89
403 429 1.075050 GGCCATGACAGATGGATCCAT 59.925 52.381 27.66 27.66 41.64 3.41
416 442 1.067295 ACTTCAGGTTCAGGCCATGA 58.933 50.000 5.01 2.70 35.62 3.07
424 450 2.838202 CCCCTAGCTTACTTCAGGTTCA 59.162 50.000 0.00 0.00 0.00 3.18
425 451 3.105283 TCCCCTAGCTTACTTCAGGTTC 58.895 50.000 0.00 0.00 0.00 3.62
426 452 2.838813 GTCCCCTAGCTTACTTCAGGTT 59.161 50.000 0.00 0.00 0.00 3.50
427 453 2.225547 TGTCCCCTAGCTTACTTCAGGT 60.226 50.000 0.00 0.00 0.00 4.00
428 454 2.432510 CTGTCCCCTAGCTTACTTCAGG 59.567 54.545 0.00 0.00 0.00 3.86
429 455 3.366396 TCTGTCCCCTAGCTTACTTCAG 58.634 50.000 0.00 0.00 0.00 3.02
430 456 3.468071 TCTGTCCCCTAGCTTACTTCA 57.532 47.619 0.00 0.00 0.00 3.02
457 483 1.132453 GGTTAATTTGCCTCTGCGACC 59.868 52.381 0.00 0.00 41.78 4.79
502 528 0.942410 GACAGTCAACGCCGTGCTAA 60.942 55.000 0.00 0.00 0.00 3.09
569 595 4.817063 TCGCGCGCCACGTACTAC 62.817 66.667 27.95 0.00 46.11 2.73
570 596 3.879682 ATCGCGCGCCACGTACTA 61.880 61.111 27.95 4.34 46.11 1.82
589 615 2.604855 CCTGAACGTATACGGCTAGCTG 60.605 54.545 27.62 22.26 44.95 4.24
591 617 1.335689 CCCTGAACGTATACGGCTAGC 60.336 57.143 27.62 6.04 44.95 3.42
594 620 1.188863 AACCCTGAACGTATACGGCT 58.811 50.000 27.62 15.19 44.95 5.52
597 623 4.040376 GCTTCTAACCCTGAACGTATACG 58.960 47.826 23.24 23.24 46.33 3.06
600 626 3.514309 ACAGCTTCTAACCCTGAACGTAT 59.486 43.478 0.00 0.00 0.00 3.06
601 627 2.895404 ACAGCTTCTAACCCTGAACGTA 59.105 45.455 0.00 0.00 0.00 3.57
602 628 1.692519 ACAGCTTCTAACCCTGAACGT 59.307 47.619 0.00 0.00 0.00 3.99
604 630 2.427506 CCACAGCTTCTAACCCTGAAC 58.572 52.381 0.00 0.00 0.00 3.18
606 632 0.324943 GCCACAGCTTCTAACCCTGA 59.675 55.000 0.00 0.00 35.50 3.86
607 633 1.021390 CGCCACAGCTTCTAACCCTG 61.021 60.000 0.00 0.00 36.60 4.45
608 634 1.296715 CGCCACAGCTTCTAACCCT 59.703 57.895 0.00 0.00 36.60 4.34
613 642 1.515954 GCCTACGCCACAGCTTCTA 59.484 57.895 0.00 0.00 36.60 2.10
624 653 4.465512 TTCCGTCGACGCCTACGC 62.466 66.667 31.73 0.00 45.53 4.42
626 655 2.575262 CGTTCCGTCGACGCCTAC 60.575 66.667 31.73 24.16 38.18 3.18
627 656 3.027170 GACGTTCCGTCGACGCCTA 62.027 63.158 31.73 16.36 46.56 3.93
628 657 4.395583 GACGTTCCGTCGACGCCT 62.396 66.667 31.73 11.25 46.56 5.52
636 665 4.974989 GTTGGCCCGACGTTCCGT 62.975 66.667 0.00 0.00 45.10 4.69
845 901 1.461091 AACTCCACTCCTCGCAACGA 61.461 55.000 0.00 0.00 0.00 3.85
852 908 1.444553 CGCACGAACTCCACTCCTC 60.445 63.158 0.00 0.00 0.00 3.71
856 912 1.222115 GCTTTCGCACGAACTCCACT 61.222 55.000 4.73 0.00 33.41 4.00
860 916 1.493311 CTGGCTTTCGCACGAACTC 59.507 57.895 4.73 0.29 38.10 3.01
870 926 4.467198 TGCTTACTACTACCTGGCTTTC 57.533 45.455 0.00 0.00 0.00 2.62
871 927 4.441634 CGATGCTTACTACTACCTGGCTTT 60.442 45.833 0.00 0.00 0.00 3.51
882 938 6.635641 TGAATACGATTGTCGATGCTTACTAC 59.364 38.462 6.34 0.00 43.74 2.73
883 939 6.731164 TGAATACGATTGTCGATGCTTACTA 58.269 36.000 6.34 0.00 43.74 1.82
884 940 5.588240 TGAATACGATTGTCGATGCTTACT 58.412 37.500 6.34 0.00 43.74 2.24
885 941 5.883328 TGAATACGATTGTCGATGCTTAC 57.117 39.130 6.34 0.00 43.74 2.34
886 942 6.699642 TGAATGAATACGATTGTCGATGCTTA 59.300 34.615 6.34 0.00 43.74 3.09
887 943 5.523552 TGAATGAATACGATTGTCGATGCTT 59.476 36.000 6.34 0.00 43.74 3.91
892 948 7.432838 TCGTAAATGAATGAATACGATTGTCGA 59.567 33.333 6.34 0.00 43.46 4.20
894 950 8.752254 TCTCGTAAATGAATGAATACGATTGTC 58.248 33.333 7.25 0.00 46.06 3.18
898 954 7.207383 TGGTCTCGTAAATGAATGAATACGAT 58.793 34.615 7.25 0.00 46.06 3.73
922 978 0.110238 CTTGCACCACGGTTTCGATG 60.110 55.000 0.00 0.00 40.11 3.84
925 981 1.010125 CACTTGCACCACGGTTTCG 60.010 57.895 0.00 0.00 43.02 3.46
927 983 2.804856 GCACTTGCACCACGGTTT 59.195 55.556 0.00 0.00 41.59 3.27
928 984 3.582120 CGCACTTGCACCACGGTT 61.582 61.111 1.48 0.00 42.21 4.44
931 987 4.012895 GACCGCACTTGCACCACG 62.013 66.667 1.48 0.00 42.21 4.94
932 988 4.012895 CGACCGCACTTGCACCAC 62.013 66.667 1.48 0.00 42.21 4.16
934 990 1.296056 ATTACGACCGCACTTGCACC 61.296 55.000 1.48 0.00 42.21 5.01
1351 1434 2.580867 GAGCAGCGCGTACAGGAG 60.581 66.667 8.43 0.00 0.00 3.69
1401 1484 1.153804 GAAGAGGCCGTCGAACTCC 60.154 63.158 0.00 0.00 31.70 3.85
1484 1567 0.874390 CGACAACATGGTGAAGGTGG 59.126 55.000 19.90 0.00 0.00 4.61
1584 1667 2.142239 GTCGAGGAACACGTACGCG 61.142 63.158 16.72 8.78 44.14 6.01
1587 1670 0.877071 TGAGGTCGAGGAACACGTAC 59.123 55.000 0.00 0.00 44.14 3.67
1708 1791 2.016393 TACGCCGGCATGAGGAAGAG 62.016 60.000 28.98 8.28 0.00 2.85
1743 1826 1.400530 CCTTCTCCGGGAATAGCCGT 61.401 60.000 0.00 0.00 37.63 5.68
1749 1832 2.073101 GGCCTCCTTCTCCGGGAAT 61.073 63.158 0.00 0.00 33.01 3.01
1965 2048 4.681978 GCGAGTGCGACCTTGGGT 62.682 66.667 0.00 0.00 40.82 4.51
1978 2061 2.789917 GGCATTCTGCTGTGCGAG 59.210 61.111 0.00 0.00 44.28 5.03
1979 2062 3.120385 CGGCATTCTGCTGTGCGA 61.120 61.111 0.00 0.00 44.43 5.10
2031 2114 1.446272 CTTCGTCTTCCTGCCGTCC 60.446 63.158 0.00 0.00 0.00 4.79
2050 2133 2.159421 ACGTCACCAGTATCGATGTCAC 60.159 50.000 8.54 0.00 0.00 3.67
2115 2198 2.432628 GTCTCCGTCCAGTTGGCG 60.433 66.667 7.66 7.66 35.52 5.69
2122 2205 2.227494 TAATCCCCGGTCTCCGTCCA 62.227 60.000 0.00 0.00 46.80 4.02
2125 2208 2.123428 CGTAATCCCCGGTCTCCGT 61.123 63.158 0.00 0.00 46.80 4.69
2133 2216 1.448893 CACCACCACGTAATCCCCG 60.449 63.158 0.00 0.00 0.00 5.73
2443 2526 2.654404 GACATACGGCGCGAGACC 60.654 66.667 12.10 0.00 33.32 3.85
2444 2527 2.654404 GGACATACGGCGCGAGAC 60.654 66.667 12.10 0.00 0.00 3.36
2454 2537 1.878522 CTCGCAGTGCCGGACATAC 60.879 63.158 5.05 0.00 0.00 2.39
2499 2582 3.671411 GGGCGCGCTAGCTAGCTA 61.671 66.667 36.02 22.85 46.85 3.32
2501 2584 4.671569 ATGGGCGCGCTAGCTAGC 62.672 66.667 31.88 31.88 45.62 3.42
2502 2585 1.560860 GAAATGGGCGCGCTAGCTAG 61.561 60.000 32.29 16.84 42.32 3.42
2551 2634 6.451064 TTTCAGTCGAATGCTAGATAGACA 57.549 37.500 8.24 0.00 0.00 3.41
2558 2641 9.430838 CTCATTTTAATTTCAGTCGAATGCTAG 57.569 33.333 8.24 0.00 0.00 3.42
2611 2694 1.831106 TGAGGATAGACGTGCCATGTT 59.169 47.619 0.00 0.00 0.00 2.71
2623 2706 3.190874 GTCTCGCTTTGGTTGAGGATAG 58.809 50.000 0.00 0.00 0.00 2.08
2627 2710 0.868406 GTGTCTCGCTTTGGTTGAGG 59.132 55.000 0.00 0.00 0.00 3.86
2628 2711 1.795286 GAGTGTCTCGCTTTGGTTGAG 59.205 52.381 0.00 0.00 0.00 3.02
2629 2712 1.540363 GGAGTGTCTCGCTTTGGTTGA 60.540 52.381 0.00 0.00 0.00 3.18
2630 2713 0.868406 GGAGTGTCTCGCTTTGGTTG 59.132 55.000 0.00 0.00 0.00 3.77
2631 2714 0.600255 CGGAGTGTCTCGCTTTGGTT 60.600 55.000 0.00 0.00 0.00 3.67
2632 2715 1.006102 CGGAGTGTCTCGCTTTGGT 60.006 57.895 0.00 0.00 0.00 3.67
2633 2716 1.738099 CCGGAGTGTCTCGCTTTGG 60.738 63.158 0.00 0.00 0.00 3.28
2634 2717 0.108615 ATCCGGAGTGTCTCGCTTTG 60.109 55.000 11.34 0.00 0.00 2.77
2635 2718 0.173708 GATCCGGAGTGTCTCGCTTT 59.826 55.000 11.34 0.00 0.00 3.51
2636 2719 1.810532 GATCCGGAGTGTCTCGCTT 59.189 57.895 11.34 0.00 0.00 4.68
2637 2720 2.473760 CGATCCGGAGTGTCTCGCT 61.474 63.158 11.34 0.00 0.00 4.93
2638 2721 2.024871 CGATCCGGAGTGTCTCGC 59.975 66.667 11.34 0.00 0.00 5.03
2639 2722 1.352404 GTCGATCCGGAGTGTCTCG 59.648 63.158 16.45 16.45 0.00 4.04
2640 2723 1.088340 TCGTCGATCCGGAGTGTCTC 61.088 60.000 11.34 0.21 0.00 3.36
2641 2724 1.078637 TCGTCGATCCGGAGTGTCT 60.079 57.895 11.34 0.00 0.00 3.41
2642 2725 1.062206 GTCGTCGATCCGGAGTGTC 59.938 63.158 11.34 1.09 0.00 3.67
2643 2726 1.239296 TTGTCGTCGATCCGGAGTGT 61.239 55.000 11.34 0.00 0.00 3.55
2644 2727 0.109458 TTTGTCGTCGATCCGGAGTG 60.109 55.000 11.34 4.61 0.00 3.51
2645 2728 0.170561 CTTTGTCGTCGATCCGGAGT 59.829 55.000 11.34 0.00 0.00 3.85
2646 2729 1.140407 GCTTTGTCGTCGATCCGGAG 61.140 60.000 11.34 0.00 0.00 4.63
2647 2730 1.153901 GCTTTGTCGTCGATCCGGA 60.154 57.895 6.61 6.61 0.00 5.14
2648 2731 2.505498 CGCTTTGTCGTCGATCCGG 61.505 63.158 0.00 0.00 0.00 5.14
2649 2732 2.505498 CCGCTTTGTCGTCGATCCG 61.505 63.158 0.00 0.00 0.00 4.18
2650 2733 1.445582 ACCGCTTTGTCGTCGATCC 60.446 57.895 0.00 0.00 0.00 3.36
2651 2734 1.683790 CCACCGCTTTGTCGTCGATC 61.684 60.000 0.00 0.00 0.00 3.69
2652 2735 1.736645 CCACCGCTTTGTCGTCGAT 60.737 57.895 0.00 0.00 0.00 3.59
2653 2736 2.355363 CCACCGCTTTGTCGTCGA 60.355 61.111 0.00 0.00 0.00 4.20
2654 2737 3.411351 CCCACCGCTTTGTCGTCG 61.411 66.667 0.00 0.00 0.00 5.12
2655 2738 2.027625 CTCCCACCGCTTTGTCGTC 61.028 63.158 0.00 0.00 0.00 4.20
2656 2739 2.030562 CTCCCACCGCTTTGTCGT 59.969 61.111 0.00 0.00 0.00 4.34
2657 2740 2.742372 CCTCCCACCGCTTTGTCG 60.742 66.667 0.00 0.00 0.00 4.35
2658 2741 1.376037 CTCCTCCCACCGCTTTGTC 60.376 63.158 0.00 0.00 0.00 3.18
2659 2742 2.750350 CTCCTCCCACCGCTTTGT 59.250 61.111 0.00 0.00 0.00 2.83
2660 2743 1.915078 ATCCTCCTCCCACCGCTTTG 61.915 60.000 0.00 0.00 0.00 2.77
2661 2744 0.326238 TATCCTCCTCCCACCGCTTT 60.326 55.000 0.00 0.00 0.00 3.51
2662 2745 0.760945 CTATCCTCCTCCCACCGCTT 60.761 60.000 0.00 0.00 0.00 4.68
2663 2746 1.152440 CTATCCTCCTCCCACCGCT 60.152 63.158 0.00 0.00 0.00 5.52
2664 2747 0.759436 TTCTATCCTCCTCCCACCGC 60.759 60.000 0.00 0.00 0.00 5.68
2665 2748 1.620819 CATTCTATCCTCCTCCCACCG 59.379 57.143 0.00 0.00 0.00 4.94
2666 2749 1.981495 CCATTCTATCCTCCTCCCACC 59.019 57.143 0.00 0.00 0.00 4.61
2667 2750 2.635427 GTCCATTCTATCCTCCTCCCAC 59.365 54.545 0.00 0.00 0.00 4.61
2668 2751 2.427889 GGTCCATTCTATCCTCCTCCCA 60.428 54.545 0.00 0.00 0.00 4.37
2669 2752 2.261729 GGTCCATTCTATCCTCCTCCC 58.738 57.143 0.00 0.00 0.00 4.30
2670 2753 2.158081 AGGGTCCATTCTATCCTCCTCC 60.158 54.545 0.00 0.00 0.00 4.30
2671 2754 3.169908 GAGGGTCCATTCTATCCTCCTC 58.830 54.545 0.00 0.00 38.36 3.71
2672 2755 2.491825 CGAGGGTCCATTCTATCCTCCT 60.492 54.545 0.00 0.00 40.50 3.69
2673 2756 1.896465 CGAGGGTCCATTCTATCCTCC 59.104 57.143 0.00 0.00 40.50 4.30
2674 2757 1.896465 CCGAGGGTCCATTCTATCCTC 59.104 57.143 0.00 0.00 40.28 3.71
2675 2758 1.220750 ACCGAGGGTCCATTCTATCCT 59.779 52.381 0.00 0.00 0.00 3.24
2676 2759 1.344763 CACCGAGGGTCCATTCTATCC 59.655 57.143 0.00 0.00 31.02 2.59
2677 2760 1.344763 CCACCGAGGGTCCATTCTATC 59.655 57.143 0.00 0.00 31.02 2.08
2678 2761 1.424638 CCACCGAGGGTCCATTCTAT 58.575 55.000 0.00 0.00 31.02 1.98
2679 2762 1.335132 GCCACCGAGGGTCCATTCTA 61.335 60.000 0.00 0.00 38.09 2.10
2680 2763 2.670148 GCCACCGAGGGTCCATTCT 61.670 63.158 0.00 0.00 38.09 2.40
2681 2764 2.124695 GCCACCGAGGGTCCATTC 60.125 66.667 0.00 0.00 38.09 2.67
2682 2765 4.096003 CGCCACCGAGGGTCCATT 62.096 66.667 0.00 0.00 38.09 3.16
2686 2769 4.736896 GACACGCCACCGAGGGTC 62.737 72.222 0.00 0.00 38.09 4.46
2727 2810 3.159858 AAGGGTGACGGTGTGGACG 62.160 63.158 0.00 0.00 37.36 4.79
2732 2815 4.657824 CGCGAAGGGTGACGGTGT 62.658 66.667 0.00 0.00 34.98 4.16
2978 3061 4.047059 CGTGTACCGCCCGTGTCT 62.047 66.667 0.00 0.00 0.00 3.41
3016 3099 1.987807 CTTGGCGGATCTGGTGGGAT 61.988 60.000 3.14 0.00 0.00 3.85
3075 3158 3.556543 TTCGTCCACGTGTACGGCC 62.557 63.158 29.42 0.00 44.95 6.13
3076 3159 2.050168 TTCGTCCACGTGTACGGC 60.050 61.111 29.42 9.20 44.95 5.68
3079 3162 1.200716 TGGATCTTCGTCCACGTGTAC 59.799 52.381 15.65 8.18 43.20 2.90
3127 3210 0.320421 TTGGCTTCTGTACTCACGCC 60.320 55.000 9.05 9.05 38.01 5.68
3139 3222 1.248486 GGAGAGTGGGTTTTGGCTTC 58.752 55.000 0.00 0.00 0.00 3.86
3144 3227 0.593128 CAAGCGGAGAGTGGGTTTTG 59.407 55.000 0.00 0.00 0.00 2.44
3148 3231 2.584391 GGTCAAGCGGAGAGTGGGT 61.584 63.158 0.00 0.00 0.00 4.51
3173 3256 0.674895 CCAGAAGTGGGAGAAAGCGG 60.675 60.000 0.00 0.00 40.67 5.52
3195 3278 1.043673 ATCTAGGGTTTCTCGGCGCT 61.044 55.000 7.64 0.00 0.00 5.92
3201 3284 4.445019 GGTGGATTGGATCTAGGGTTTCTC 60.445 50.000 0.00 0.00 0.00 2.87
3204 3287 2.514160 GGGTGGATTGGATCTAGGGTTT 59.486 50.000 0.00 0.00 0.00 3.27
3258 3342 1.686052 AGCGAAGGATCTGAGATCACC 59.314 52.381 22.67 8.32 0.00 4.02
3298 3382 0.392863 CATGGAATCAGGTGGTCGCA 60.393 55.000 0.00 0.00 0.00 5.10
3321 3405 0.251341 AATCCATGCCCGCCCTTATC 60.251 55.000 0.00 0.00 0.00 1.75
3323 3407 1.150536 GAATCCATGCCCGCCCTTA 59.849 57.895 0.00 0.00 0.00 2.69
3354 3438 4.514577 AGCACCGAATCCCTCGCG 62.515 66.667 0.00 0.00 46.71 5.87
3355 3439 2.892425 CAGCACCGAATCCCTCGC 60.892 66.667 0.00 0.00 46.71 5.03
3357 3441 1.153349 GACCAGCACCGAATCCCTC 60.153 63.158 0.00 0.00 0.00 4.30
3358 3442 1.903877 CTGACCAGCACCGAATCCCT 61.904 60.000 0.00 0.00 0.00 4.20
3359 3443 1.450312 CTGACCAGCACCGAATCCC 60.450 63.158 0.00 0.00 0.00 3.85
3360 3444 1.450312 CCTGACCAGCACCGAATCC 60.450 63.158 0.00 0.00 0.00 3.01
3361 3445 2.109126 GCCTGACCAGCACCGAATC 61.109 63.158 0.00 0.00 0.00 2.52
3362 3446 2.045926 GCCTGACCAGCACCGAAT 60.046 61.111 0.00 0.00 0.00 3.34
3363 3447 4.680237 CGCCTGACCAGCACCGAA 62.680 66.667 0.00 0.00 0.00 4.30
3416 3500 3.918220 CTGCCACGATCGAAGCGC 61.918 66.667 24.34 16.46 0.00 5.92
3417 3501 3.918220 GCTGCCACGATCGAAGCG 61.918 66.667 24.34 18.37 0.00 4.68
3418 3502 3.918220 CGCTGCCACGATCGAAGC 61.918 66.667 24.34 22.67 34.06 3.86
3419 3503 3.918220 GCGCTGCCACGATCGAAG 61.918 66.667 24.34 13.33 34.06 3.79
3431 3515 4.104633 GTTGACGTCGTCGCGCTG 62.105 66.667 19.81 0.00 41.18 5.18
3432 3516 4.617486 TGTTGACGTCGTCGCGCT 62.617 61.111 19.81 0.00 41.18 5.92
3433 3517 3.684315 TTGTTGACGTCGTCGCGC 61.684 61.111 19.81 12.57 41.18 6.86
3434 3518 2.068597 TTGTTGTTGACGTCGTCGCG 62.069 55.000 19.81 0.00 41.18 5.87
3435 3519 0.649628 GTTGTTGTTGACGTCGTCGC 60.650 55.000 19.81 15.18 41.18 5.19
3436 3520 0.379760 CGTTGTTGTTGACGTCGTCG 60.380 55.000 19.81 0.00 43.34 5.12
3437 3521 0.043652 CCGTTGTTGTTGACGTCGTC 60.044 55.000 18.51 18.51 37.56 4.20
3438 3522 2.000587 CCGTTGTTGTTGACGTCGT 58.999 52.632 11.62 0.00 37.56 4.34
3439 3523 1.367195 GCCGTTGTTGTTGACGTCG 60.367 57.895 11.62 0.00 37.56 5.12
3440 3524 1.367195 CGCCGTTGTTGTTGACGTC 60.367 57.895 9.11 9.11 37.56 4.34
3441 3525 2.704616 CGCCGTTGTTGTTGACGT 59.295 55.556 0.00 0.00 37.56 4.34
3442 3526 2.052590 CCGCCGTTGTTGTTGACG 60.053 61.111 0.00 0.00 38.90 4.35
3443 3527 2.353030 GCCGCCGTTGTTGTTGAC 60.353 61.111 0.00 0.00 0.00 3.18
3444 3528 2.329678 CTTGCCGCCGTTGTTGTTGA 62.330 55.000 0.00 0.00 0.00 3.18
3445 3529 1.943693 CTTGCCGCCGTTGTTGTTG 60.944 57.895 0.00 0.00 0.00 3.33
3446 3530 2.331019 GACTTGCCGCCGTTGTTGTT 62.331 55.000 0.00 0.00 0.00 2.83
3447 3531 2.826738 ACTTGCCGCCGTTGTTGT 60.827 55.556 0.00 0.00 0.00 3.32
3448 3532 2.051345 GACTTGCCGCCGTTGTTG 60.051 61.111 0.00 0.00 0.00 3.33
3449 3533 3.284449 GGACTTGCCGCCGTTGTT 61.284 61.111 0.00 0.00 0.00 2.83
3450 3534 4.555709 TGGACTTGCCGCCGTTGT 62.556 61.111 0.00 0.00 40.66 3.32
3451 3535 4.025401 GTGGACTTGCCGCCGTTG 62.025 66.667 0.00 0.00 41.49 4.10
3456 3540 4.643387 AGTGGGTGGACTTGCCGC 62.643 66.667 0.00 0.00 46.77 6.53
3457 3541 2.358737 GAGTGGGTGGACTTGCCG 60.359 66.667 0.00 0.00 40.66 5.69
3458 3542 2.358737 CGAGTGGGTGGACTTGCC 60.359 66.667 0.00 0.00 37.10 4.52
3459 3543 2.358737 CCGAGTGGGTGGACTTGC 60.359 66.667 0.00 0.00 0.00 4.01
3460 3544 3.466881 TCCGAGTGGGTGGACTTG 58.533 61.111 0.00 0.00 37.00 3.16
3464 3548 1.535444 ATGTGTCCGAGTGGGTGGA 60.535 57.895 0.00 0.00 37.00 4.02
3465 3549 1.079127 GATGTGTCCGAGTGGGTGG 60.079 63.158 0.00 0.00 37.00 4.61
3466 3550 1.446099 CGATGTGTCCGAGTGGGTG 60.446 63.158 0.00 0.00 37.00 4.61
3467 3551 2.646175 CCGATGTGTCCGAGTGGGT 61.646 63.158 0.00 0.00 37.00 4.51
3468 3552 2.184322 CCGATGTGTCCGAGTGGG 59.816 66.667 0.00 0.00 35.24 4.61
3469 3553 1.317431 TACCCGATGTGTCCGAGTGG 61.317 60.000 0.00 0.00 0.00 4.00
3470 3554 0.179145 GTACCCGATGTGTCCGAGTG 60.179 60.000 0.00 0.00 0.00 3.51
3471 3555 1.318158 GGTACCCGATGTGTCCGAGT 61.318 60.000 0.00 0.00 0.00 4.18
3472 3556 1.035932 AGGTACCCGATGTGTCCGAG 61.036 60.000 8.74 0.00 0.00 4.63
3473 3557 1.000521 AGGTACCCGATGTGTCCGA 60.001 57.895 8.74 0.00 0.00 4.55
3474 3558 1.436336 GAGGTACCCGATGTGTCCG 59.564 63.158 8.74 0.00 0.00 4.79
3475 3559 1.436336 CGAGGTACCCGATGTGTCC 59.564 63.158 8.74 0.00 0.00 4.02
3476 3560 1.226888 GCGAGGTACCCGATGTGTC 60.227 63.158 22.13 6.06 0.00 3.67
3477 3561 2.890371 GCGAGGTACCCGATGTGT 59.110 61.111 22.13 0.00 0.00 3.72
3478 3562 2.278596 CGCGAGGTACCCGATGTG 60.279 66.667 22.13 7.92 0.00 3.21
3479 3563 4.203076 GCGCGAGGTACCCGATGT 62.203 66.667 22.13 0.00 0.00 3.06
3480 3564 3.900892 AGCGCGAGGTACCCGATG 61.901 66.667 22.13 15.29 41.99 3.84
3481 3565 3.900892 CAGCGCGAGGTACCCGAT 61.901 66.667 22.13 10.04 41.81 4.18
3485 3569 4.509737 GTCCCAGCGCGAGGTACC 62.510 72.222 12.10 2.73 41.81 3.34
3486 3570 4.849329 CGTCCCAGCGCGAGGTAC 62.849 72.222 12.10 13.06 41.81 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.