AutoCloner

Multiple sequence alignment - TraesCS6B01G351100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6B01G351100	chr6B	100.000	2528	0	0	1	2528	616431124	616428597	0.000000e+00	4669.0
1	TraesCS6B01G351100	chr6B	91.687	1672	100	13	144	1785	616380727	616382389	0.000000e+00	2281.0
2	TraesCS6B01G351100	chr6B	93.860	114	4	1	2415	2528	68915682	68915792	4.330000e-38	169.0
3	TraesCS6B01G351100	chr6B	86.577	149	10	5	1	147	616380536	616380676	3.370000e-34	156.0
4	TraesCS6B01G351100	chr6D	91.036	1506	96	20	351	1825	410055549	410054052	0.000000e+00	1997.0
5	TraesCS6B01G351100	chr6D	92.336	1083	67	11	656	1727	409872471	409873548	0.000000e+00	1526.0
6	TraesCS6B01G351100	chr6D	89.019	1193	85	15	670	1825	409882533	409883716	0.000000e+00	1435.0
7	TraesCS6B01G351100	chr6D	87.531	818	53	23	1736	2528	410042533	410041740	0.000000e+00	900.0
8	TraesCS6B01G351100	chr6D	87.480	639	52	19	1	625	409871856	409872480	0.000000e+00	712.0
9	TraesCS6B01G351100	chr6D	85.374	294	24	4	1	291	410070326	410070049	1.140000e-73	287.0
10	TraesCS6B01G351100	chr6D	90.909	143	13	0	480	622	409882384	409882526	2.570000e-45	193.0
11	TraesCS6B01G351100	chr6A	91.197	1170	70	13	656	1796	555323477	555324642	0.000000e+00	1559.0
12	TraesCS6B01G351100	chr6A	85.714	665	45	28	1885	2528	555358416	555359051	0.000000e+00	656.0
13	TraesCS6B01G351100	chr6A	87.770	556	33	13	80	625	555322956	555323486	3.570000e-173	617.0
14	TraesCS6B01G351100	chr6A	91.489	47	3	1	1835	1880	555358224	555358270	2.100000e-06	63.9
15	TraesCS6B01G351100	chr2A	77.001	987	138	50	1	940	95157632	95158576	1.360000e-132	483.0
16	TraesCS6B01G351100	chr2A	77.081	973	134	50	1	926	95272341	95273271	1.760000e-131	479.0
17	TraesCS6B01G351100	chr2A	85.714	224	26	5	993	1213	90045394	90045174	5.440000e-57	231.0
18	TraesCS6B01G351100	chr2D	76.714	992	137	56	1	928	96679299	96680260	1.370000e-127	466.0
19	TraesCS6B01G351100	chr2D	78.053	647	95	31	306	928	96749424	96750047	5.140000e-97	364.0
20	TraesCS6B01G351100	chr2D	76.182	550	97	25	995	1524	96775627	96776162	2.490000e-65	259.0
21	TraesCS6B01G351100	chr2D	84.259	216	29	4	993	1205	90309259	90309046	3.300000e-49	206.0
22	TraesCS6B01G351100	chr2B	76.555	981	143	52	2	928	147829650	147830597	8.240000e-125	457.0
23	TraesCS6B01G351100	chr2B	76.555	981	143	52	2	928	147869403	147870350	8.240000e-125	457.0
24	TraesCS6B01G351100	chr2B	76.488	672	88	37	1	625	148036301	148036949	4.090000e-78	302.0
25	TraesCS6B01G351100	chr2B	90.099	202	11	6	2333	2528	669447517	669447319	1.160000e-63	254.0
26	TraesCS6B01G351100	chr2B	88.942	208	14	6	2327	2528	84773553	84773349	5.400000e-62	248.0
27	TraesCS6B01G351100	chr7B	90.244	205	11	6	2327	2525	213253942	213254143	2.490000e-65	259.0
28	TraesCS6B01G351100	chrUn	76.130	553	96	26	993	1524	17365345	17365882	8.970000e-65	257.0
29	TraesCS6B01G351100	chr1B	89.423	208	13	6	2327	2528	644364917	644364713	1.160000e-63	254.0
30	TraesCS6B01G351100	chr7A	91.667	156	7	5	2327	2476	675923838	675923683	7.090000e-51	211.0
31	TraesCS6B01G351100	chr3A	89.344	122	7	3	2327	2442	687598943	687598822	5.630000e-32	148.0
32	TraesCS6B01G351100	chr5A	87.705	122	9	5	2327	2442	340598827	340598706	1.220000e-28	137.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6B01G351100	chr6B	616428597	616431124	2527	True	4669.00	4669	100.0000	1	2528	1	chr6B.!!$R1	2527
1	TraesCS6B01G351100	chr6B	616380536	616382389	1853	False	1218.50	2281	89.1320	1	1785	2	chr6B.!!$F2	1784
2	TraesCS6B01G351100	chr6D	410054052	410055549	1497	True	1997.00	1997	91.0360	351	1825	1	chr6D.!!$R2	1474
3	TraesCS6B01G351100	chr6D	409871856	409873548	1692	False	1119.00	1526	89.9080	1	1727	2	chr6D.!!$F1	1726
4	TraesCS6B01G351100	chr6D	410041740	410042533	793	True	900.00	900	87.5310	1736	2528	1	chr6D.!!$R1	792
5	TraesCS6B01G351100	chr6D	409882384	409883716	1332	False	814.00	1435	89.9640	480	1825	2	chr6D.!!$F2	1345
6	TraesCS6B01G351100	chr6A	555322956	555324642	1686	False	1088.00	1559	89.4835	80	1796	2	chr6A.!!$F1	1716
7	TraesCS6B01G351100	chr6A	555358224	555359051	827	False	359.95	656	88.6015	1835	2528	2	chr6A.!!$F2	693
8	TraesCS6B01G351100	chr2A	95157632	95158576	944	False	483.00	483	77.0010	1	940	1	chr2A.!!$F1	939
9	TraesCS6B01G351100	chr2A	95272341	95273271	930	False	479.00	479	77.0810	1	926	1	chr2A.!!$F2	925
10	TraesCS6B01G351100	chr2D	96679299	96680260	961	False	466.00	466	76.7140	1	928	1	chr2D.!!$F1	927
11	TraesCS6B01G351100	chr2D	96749424	96750047	623	False	364.00	364	78.0530	306	928	1	chr2D.!!$F2	622
12	TraesCS6B01G351100	chr2D	96775627	96776162	535	False	259.00	259	76.1820	995	1524	1	chr2D.!!$F3	529
13	TraesCS6B01G351100	chr2B	147829650	147830597	947	False	457.00	457	76.5550	2	928	1	chr2B.!!$F1	926
14	TraesCS6B01G351100	chr2B	147869403	147870350	947	False	457.00	457	76.5550	2	928	1	chr2B.!!$F2	926
15	TraesCS6B01G351100	chr2B	148036301	148036949	648	False	302.00	302	76.4880	1	625	1	chr2B.!!$F3	624
16	TraesCS6B01G351100	chrUn	17365345	17365882	537	False	257.00	257	76.1300	993	1524	1	chrUn.!!$F1	531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
293	393	0.400213	TGCTTCACCCATCCGTCTTT	59.6	50.0	0.0	0.0	0.0	2.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2246	2615	0.25064	CTATTGCTAGCAGGGGCAGG	60.251	60.0	18.45	1.96	44.61	4.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	1.001641	GAGCCAGTTGATGCCACCT	60.002	57.895	0.00	0.00	0.00	4.00
52	59	0.464916	ACACCCACAACGGAGGAAAC	60.465	55.000	0.00	0.00	36.56	2.78
213	297	1.079819	CATGGTCGTTGGCTCGTCT	60.080	57.895	3.16	0.00	0.00	4.18
222	308	1.272769	GTTGGCTCGTCTAGGACAGTT	59.727	52.381	0.00	0.00	32.09	3.16
224	310	1.272490	TGGCTCGTCTAGGACAGTTTG	59.728	52.381	0.00	0.00	32.09	2.93
257	353	6.043127	TGGATCAAGCCAGCTATAAATAGACA	59.957	38.462	1.08	0.00	33.10	3.41
271	367	4.503741	AATAGACATGCACAACACCAAC	57.496	40.909	0.00	0.00	0.00	3.77
273	369	1.949525	AGACATGCACAACACCAACTC	59.050	47.619	0.00	0.00	0.00	3.01
293	393	0.400213	TGCTTCACCCATCCGTCTTT	59.600	50.000	0.00	0.00	0.00	2.52
294	394	1.202879	TGCTTCACCCATCCGTCTTTT	60.203	47.619	0.00	0.00	0.00	2.27
304	404	2.941453	TCCGTCTTTTCATCCTCTCG	57.059	50.000	0.00	0.00	0.00	4.04
327	452	4.500545	GCTAGCTAGCTGCAGAGTTCATAA	60.501	45.833	33.71	0.89	45.62	1.90
328	453	4.686191	AGCTAGCTGCAGAGTTCATAAT	57.314	40.909	18.57	0.00	45.94	1.28
329	454	5.798125	AGCTAGCTGCAGAGTTCATAATA	57.202	39.130	18.57	0.00	45.94	0.98
330	455	6.357579	AGCTAGCTGCAGAGTTCATAATAT	57.642	37.500	18.57	0.00	45.94	1.28
331	456	7.473735	AGCTAGCTGCAGAGTTCATAATATA	57.526	36.000	18.57	0.00	45.94	0.86
349	474	0.677731	TAGCAACCATGGCTGCTGAC	60.678	55.000	40.32	15.85	45.64	3.51
382	509	1.993956	TGGTTGTGGTAGCATTGCTT	58.006	45.000	17.71	1.09	40.44	3.91
502	629	0.542467	TCACCGTGGGCTACTACCAA	60.542	55.000	0.00	0.00	40.24	3.67
613	740	3.467803	CCTCTTCTTCCACGACTGTTTT	58.532	45.455	0.00	0.00	0.00	2.43
627	754	0.881159	TGTTTTGTCAGGGTACGCCG	60.881	55.000	6.27	0.00	34.97	6.46
694	847	4.969395	CGTGTGAATATTTACGCATGCATT	59.031	37.500	19.57	8.48	0.00	3.56
831	1002	4.090588	CCCAGCCTCCGCGGTTAA	62.091	66.667	27.15	4.62	41.18	2.01
903	1074	3.728267	CTCGTGCGCCGACATCGTA	62.728	63.158	15.44	0.00	41.60	3.43
1107	1281	3.885901	TCCTCGAGGATATGTTCAGAGTG	59.114	47.826	30.49	0.00	39.78	3.51
1184	1358	2.286523	CCCACTGCTCGTCCTTCCT	61.287	63.158	0.00	0.00	0.00	3.36
1194	1368	1.601419	CGTCCTTCCTTGACCGCCTA	61.601	60.000	0.00	0.00	0.00	3.93
1629	1813	1.209383	GCTCGTGCTCTCGTGTGTA	59.791	57.895	1.41	0.00	36.03	2.90
1705	1892	9.959749	GGTTCATTCTTTGTTTTACATCTGTAA	57.040	29.630	0.00	0.00	38.60	2.41
1722	1909	9.903682	ACATCTGTAATTGAATCTTTTCTGTTG	57.096	29.630	0.00	0.00	32.78	3.33
1727	1914	9.950680	TGTAATTGAATCTTTTCTGTTGACTTC	57.049	29.630	0.00	0.00	32.78	3.01
1728	1915	9.107367	GTAATTGAATCTTTTCTGTTGACTTCG	57.893	33.333	0.00	0.00	32.78	3.79
1928	2273	3.168773	GCAAGTGGGGCGAAAGATA	57.831	52.632	0.00	0.00	0.00	1.98
1929	2274	1.017387	GCAAGTGGGGCGAAAGATAG	58.983	55.000	0.00	0.00	0.00	2.08
1930	2275	1.406887	GCAAGTGGGGCGAAAGATAGA	60.407	52.381	0.00	0.00	0.00	1.98
1931	2276	2.555199	CAAGTGGGGCGAAAGATAGAG	58.445	52.381	0.00	0.00	0.00	2.43
1961	2306	3.994392	GGTTCAGTTCGTTTAGCATCAGA	59.006	43.478	0.00	0.00	0.00	3.27
1977	2322	2.089201	TCAGAACTCGGCTCGTGATTA	58.911	47.619	4.13	0.00	0.00	1.75
1979	2324	2.093106	AGAACTCGGCTCGTGATTAGT	58.907	47.619	4.13	0.00	0.00	2.24
2021	2372	1.810030	GATGAACCGTGGACTCGCC	60.810	63.158	0.00	0.00	37.10	5.54
2078	2429	9.445878	CCAGTACTATCCTACATTATTCTACGA	57.554	37.037	0.00	0.00	0.00	3.43
2094	2445	9.541143	TTATTCTACGATGTGATTAATTGCTCA	57.459	29.630	0.00	0.00	0.00	4.26
2109	2460	3.213206	TGCTCATGTCCTGTTTTCAGT	57.787	42.857	0.00	0.00	45.68	3.41
2110	2461	4.350368	TGCTCATGTCCTGTTTTCAGTA	57.650	40.909	0.00	0.00	45.68	2.74
2111	2462	4.065088	TGCTCATGTCCTGTTTTCAGTAC	58.935	43.478	0.00	0.00	45.68	2.73
2225	2593	4.524318	CCGCGCCTAATCCCGTGT	62.524	66.667	0.00	0.00	33.49	4.49
2228	2596	1.300697	GCGCCTAATCCCGTGTAGG	60.301	63.158	0.00	0.00	40.03	3.18
2231	2600	2.523440	CCTAATCCCGTGTAGGCCA	58.477	57.895	5.01	0.00	39.21	5.36
2244	2613	2.124507	TAGGCCAGCCGCAGTTTCTT	62.125	55.000	5.01	0.00	41.95	2.52
2245	2614	2.256461	GCCAGCCGCAGTTTCTTG	59.744	61.111	0.00	0.00	37.47	3.02
2246	2615	2.256461	CCAGCCGCAGTTTCTTGC	59.744	61.111	0.00	0.00	40.67	4.01
2247	2616	2.256461	CAGCCGCAGTTTCTTGCC	59.744	61.111	0.00	0.00	41.01	4.52
2248	2617	2.113986	AGCCGCAGTTTCTTGCCT	59.886	55.556	0.00	0.00	41.01	4.75
2252	2621	2.653115	GCAGTTTCTTGCCTGCCC	59.347	61.111	0.24	0.00	46.55	5.36
2253	2622	2.935740	GCAGTTTCTTGCCTGCCCC	61.936	63.158	0.24	0.00	46.55	5.80
2254	2623	1.228675	CAGTTTCTTGCCTGCCCCT	60.229	57.895	0.00	0.00	0.00	4.79
2255	2624	1.228675	AGTTTCTTGCCTGCCCCTG	60.229	57.895	0.00	0.00	0.00	4.45
2256	2625	2.601367	TTTCTTGCCTGCCCCTGC	60.601	61.111	0.00	0.00	38.26	4.85
2268	2637	2.568956	CTGCCCCTGCTAGCAATAGATA	59.431	50.000	19.86	3.17	38.82	1.98
2269	2638	2.978978	TGCCCCTGCTAGCAATAGATAA	59.021	45.455	19.86	0.00	35.69	1.75
2270	2639	3.394274	TGCCCCTGCTAGCAATAGATAAA	59.606	43.478	19.86	0.00	35.69	1.40
2271	2640	4.006319	GCCCCTGCTAGCAATAGATAAAG	58.994	47.826	19.86	3.28	33.53	1.85
2277	2646	6.463614	CCTGCTAGCAATAGATAAAGAGTGGT	60.464	42.308	19.86	0.00	0.00	4.16
2278	2647	6.889198	TGCTAGCAATAGATAAAGAGTGGTT	58.111	36.000	16.84	0.00	0.00	3.67
2290	2659	2.171489	GAGTGGTTTCGCCTCGCAAC	62.171	60.000	0.00	0.00	38.35	4.17
2305	2688	0.168128	GCAACGGCGTCATAAGCTTT	59.832	50.000	15.17	0.00	34.52	3.51
2313	2696	3.439129	GGCGTCATAAGCTTTAGTTGGTT	59.561	43.478	3.20	0.00	34.52	3.67
2322	2705	2.354403	GCTTTAGTTGGTTAGCCGAGGA	60.354	50.000	0.00	0.00	37.67	3.71
2386	2780	3.749064	GCGTCACGGAGCAGGAGA	61.749	66.667	0.00	0.00	0.00	3.71
2498	2892	4.123506	CGGAAGAAGAATAAGAAGAGGCC	58.876	47.826	0.00	0.00	0.00	5.19
2501	2895	5.454045	GGAAGAAGAATAAGAAGAGGCCGAT	60.454	44.000	0.00	0.00	0.00	4.18

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
31	32	1.338890	TTCCTCCGTTGTGGGTGTCA	61.339	55.000	0.00	0.00	38.76	3.58
52	59	1.809207	GGTTGACATTCCATGCCCG	59.191	57.895	0.00	0.00	0.00	6.13
72	79	0.917259	GAACATAGTGACAGCTCGCG	59.083	55.000	0.00	0.00	31.62	5.87
213	297	5.755409	TCCAAGCTAATCAAACTGTCCTA	57.245	39.130	0.00	0.00	0.00	2.94
257	353	0.670162	GCAGAGTTGGTGTTGTGCAT	59.330	50.000	0.00	0.00	34.11	3.96
271	367	0.460987	GACGGATGGGTGAAGCAGAG	60.461	60.000	0.00	0.00	0.00	3.35
273	369	0.036010	AAGACGGATGGGTGAAGCAG	60.036	55.000	0.00	0.00	0.00	4.24
293	393	1.883275	GCTAGCTAGCGAGAGGATGAA	59.117	52.381	28.89	0.00	39.82	2.57
294	394	1.529226	GCTAGCTAGCGAGAGGATGA	58.471	55.000	28.89	0.00	39.82	2.92
349	474	0.599204	CAACCAAGGCAGCAAGCTTG	60.599	55.000	22.44	22.44	44.79	4.01
502	629	1.632046	CCGCGTTATGGCACTTCGTT	61.632	55.000	4.92	0.00	0.00	3.85
613	740	0.608856	TAGTTCGGCGTACCCTGACA	60.609	55.000	13.15	0.00	0.00	3.58
627	754	9.098355	TGCATGAATTCTATACACTTGTAGTTC	57.902	33.333	7.05	0.00	33.52	3.01
677	830	9.695526	AAACATATCAATGCATGCGTAAATATT	57.304	25.926	13.96	2.61	36.50	1.28
694	847	4.629634	CGTTAGTGCCTCACAAACATATCA	59.370	41.667	0.00	0.00	36.74	2.15
787	958	1.218316	GGATGCCGAACTTCTCCGT	59.782	57.895	0.00	0.00	0.00	4.69
831	1002	4.194720	GCCGCGTCGATCACCTCT	62.195	66.667	4.92	0.00	0.00	3.69
1184	1358	2.154747	TTTGGGGGTAGGCGGTCAA	61.155	57.895	0.00	0.00	0.00	3.18
1194	1368	2.612493	CGATGAGGGGTTTGGGGGT	61.612	63.158	0.00	0.00	0.00	4.95
1620	1804	5.680229	CGGTAATTTAGCTAGTACACACGAG	59.320	44.000	11.31	0.00	0.00	4.18
1622	1806	4.736793	CCGGTAATTTAGCTAGTACACACG	59.263	45.833	0.00	5.60	0.00	4.49
1629	1813	3.197116	ACAGCACCGGTAATTTAGCTAGT	59.803	43.478	6.87	8.95	0.00	2.57
1705	1892	7.264373	ACGAAGTCAACAGAAAAGATTCAAT	57.736	32.000	0.00	0.00	29.74	2.57
1722	1909	6.145338	TGAAGATACCTCCATAACGAAGTC	57.855	41.667	0.00	0.00	45.00	3.01
1727	1914	5.006746	GCAAACTGAAGATACCTCCATAACG	59.993	44.000	0.00	0.00	0.00	3.18
1728	1915	6.116126	AGCAAACTGAAGATACCTCCATAAC	58.884	40.000	0.00	0.00	0.00	1.89
1900	2245	1.080569	CCCACTTGCGCATGGTTTC	60.081	57.895	24.55	0.00	33.80	2.78
1901	2246	2.573083	CCCCACTTGCGCATGGTTT	61.573	57.895	24.55	4.37	33.80	3.27
1921	2266	5.482908	TGAACCACAGCTTCTCTATCTTTC	58.517	41.667	0.00	0.00	0.00	2.62
1961	2306	2.607187	CAACTAATCACGAGCCGAGTT	58.393	47.619	1.50	0.00	0.00	3.01
1977	2322	2.455674	TGTGATTACGCAGAGCAACT	57.544	45.000	0.00	0.00	32.49	3.16
1979	2324	3.750652	TCAAATGTGATTACGCAGAGCAA	59.249	39.130	0.00	0.00	39.92	3.91
2021	2372	3.619483	TGCATACTTTTTGGATCGTACCG	59.381	43.478	0.00	0.00	0.00	4.02
2078	2429	5.889853	ACAGGACATGAGCAATTAATCACAT	59.110	36.000	0.00	0.00	0.00	3.21
2094	2445	4.495422	CGCTAGTACTGAAAACAGGACAT	58.505	43.478	13.84	3.51	38.48	3.06
2109	2460	3.833645	CCTGCACCGCCGCTAGTA	61.834	66.667	0.00	0.00	0.00	1.82
2225	2593	2.046314	GAAACTGCGGCTGGCCTA	60.046	61.111	3.32	0.00	42.61	3.93
2228	2596	2.256461	CAAGAAACTGCGGCTGGC	59.744	61.111	11.64	0.00	43.96	4.85
2231	2600	2.113986	AGGCAAGAAACTGCGGCT	59.886	55.556	0.00	0.00	43.60	5.52
2245	2614	2.343475	TATTGCTAGCAGGGGCAGGC	62.343	60.000	18.45	0.00	44.61	4.85
2246	2615	0.250640	CTATTGCTAGCAGGGGCAGG	60.251	60.000	18.45	1.96	44.61	4.85
2247	2616	0.761187	TCTATTGCTAGCAGGGGCAG	59.239	55.000	18.45	11.34	44.61	4.85
2248	2617	1.438469	ATCTATTGCTAGCAGGGGCA	58.562	50.000	18.45	2.54	44.61	5.36
2250	2619	5.012561	ACTCTTTATCTATTGCTAGCAGGGG	59.987	44.000	18.45	11.46	0.00	4.79
2251	2620	5.931146	CACTCTTTATCTATTGCTAGCAGGG	59.069	44.000	18.45	11.81	0.00	4.45
2252	2621	5.931146	CCACTCTTTATCTATTGCTAGCAGG	59.069	44.000	18.45	12.16	0.00	4.85
2253	2622	6.520272	ACCACTCTTTATCTATTGCTAGCAG	58.480	40.000	18.45	6.82	0.00	4.24
2254	2623	6.485830	ACCACTCTTTATCTATTGCTAGCA	57.514	37.500	14.93	14.93	0.00	3.49
2255	2624	7.306866	CGAAACCACTCTTTATCTATTGCTAGC	60.307	40.741	8.10	8.10	0.00	3.42
2256	2625	7.306866	GCGAAACCACTCTTTATCTATTGCTAG	60.307	40.741	0.00	0.00	0.00	3.42
2268	2637	1.228657	GCGAGGCGAAACCACTCTTT	61.229	55.000	0.00	0.00	43.14	2.52
2269	2638	1.668151	GCGAGGCGAAACCACTCTT	60.668	57.895	0.00	0.00	43.14	2.85
2270	2639	2.048127	GCGAGGCGAAACCACTCT	60.048	61.111	0.00	0.00	43.14	3.24
2271	2640	1.959226	TTGCGAGGCGAAACCACTC	60.959	57.895	0.00	0.00	43.14	3.51
2290	2659	2.030457	CCAACTAAAGCTTATGACGCCG	59.970	50.000	0.00	0.00	0.00	6.46
2294	2663	5.220605	CGGCTAACCAACTAAAGCTTATGAC	60.221	44.000	0.00	0.00	35.30	3.06
2297	2666	5.093849	TCGGCTAACCAACTAAAGCTTAT	57.906	39.130	0.00	0.00	35.30	1.73
2299	2682	3.335579	CTCGGCTAACCAACTAAAGCTT	58.664	45.455	0.00	0.00	35.30	3.74
2305	2688	2.028748	GTGTTCCTCGGCTAACCAACTA	60.029	50.000	0.00	0.00	34.57	2.24
2313	2696	4.789075	GCGCGTGTTCCTCGGCTA	62.789	66.667	8.43	0.00	0.00	3.93
2343	2731	2.912025	AACACCTTGGCCTTGCGG	60.912	61.111	3.32	1.07	0.00	5.69
2345	2733	2.644992	CGAACACCTTGGCCTTGC	59.355	61.111	3.32	0.00	0.00	4.01
2346	2734	2.644992	GCGAACACCTTGGCCTTG	59.355	61.111	3.32	0.00	0.00	3.61
2347	2735	2.978010	CGCGAACACCTTGGCCTT	60.978	61.111	0.00	0.00	0.00	4.35
2350	2738	3.423154	CTCCGCGAACACCTTGGC	61.423	66.667	8.23	0.00	0.00	4.52

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.