Multiple sequence alignment - TraesCS6B01G351000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G351000 chr6B 100.000 4250 0 0 1 4250 616429786 616425537 0.000000e+00 7849.0
1 TraesCS6B01G351000 chr6B 88.769 463 34 4 1 447 616381929 616382389 6.210000e-153 551.0
2 TraesCS6B01G351000 chr6B 91.083 157 11 1 1077 1233 68915682 68915835 4.310000e-50 209.0
3 TraesCS6B01G351000 chr6B 90.714 140 11 2 3438 3576 36810822 36810684 7.260000e-43 185.0
4 TraesCS6B01G351000 chr6B 88.079 151 13 3 3450 3599 697815260 697815114 1.570000e-39 174.0
5 TraesCS6B01G351000 chr6B 87.000 100 9 2 3437 3533 704862522 704862620 4.490000e-20 110.0
6 TraesCS6B01G351000 chr6D 96.215 1585 57 1 1729 3313 410041177 410039596 0.000000e+00 2591.0
7 TraesCS6B01G351000 chr6D 88.560 979 63 23 398 1351 410042533 410041579 0.000000e+00 1142.0
8 TraesCS6B01G351000 chr6D 90.855 503 29 11 1 487 410054553 410054052 0.000000e+00 658.0
9 TraesCS6B01G351000 chr6D 87.723 505 37 8 1 487 409883219 409883716 2.220000e-157 566.0
10 TraesCS6B01G351000 chr6D 90.769 390 31 5 1 389 409873163 409873548 2.270000e-142 516.0
11 TraesCS6B01G351000 chr6D 91.205 307 21 5 3683 3987 410039166 410038864 3.060000e-111 412.0
12 TraesCS6B01G351000 chr6D 88.710 124 9 4 3473 3595 3104245 3104126 3.420000e-31 147.0
13 TraesCS6B01G351000 chr6D 69.848 1121 272 59 1981 3068 410117240 410116153 2.060000e-28 137.0
14 TraesCS6B01G351000 chr6D 90.667 75 6 1 4135 4209 409890613 409890540 9.730000e-17 99.0
15 TraesCS6B01G351000 chr6D 98.148 54 1 0 1676 1729 410041279 410041226 1.260000e-15 95.3
16 TraesCS6B01G351000 chr6D 93.443 61 4 0 3600 3660 410039464 410039404 1.630000e-14 91.6
17 TraesCS6B01G351000 chr6A 91.942 1849 97 29 1613 3436 555359426 555361247 0.000000e+00 2542.0
18 TraesCS6B01G351000 chr6A 85.907 1036 63 40 547 1529 555358416 555359421 0.000000e+00 1027.0
19 TraesCS6B01G351000 chr6A 90.147 477 26 9 1 458 555324168 555324642 6.080000e-168 601.0
20 TraesCS6B01G351000 chr6A 89.600 125 7 4 3473 3595 68503176 68503296 2.050000e-33 154.0
21 TraesCS6B01G351000 chr6A 71.159 690 156 33 1981 2650 555415955 555415289 9.590000e-27 132.0
22 TraesCS6B01G351000 chr6A 91.489 47 3 1 497 542 555358224 555358270 3.550000e-06 63.9
23 TraesCS6B01G351000 chr7B 76.971 1433 275 39 1838 3238 85842935 85841526 0.000000e+00 767.0
24 TraesCS6B01G351000 chr7B 74.030 1263 266 49 1829 3054 85823078 85824315 3.870000e-125 459.0
25 TraesCS6B01G351000 chr7B 89.286 224 15 6 989 1206 213253942 213254162 5.410000e-69 272.0
26 TraesCS6B01G351000 chr7B 89.000 100 8 2 3434 3533 616897332 616897428 2.080000e-23 121.0
27 TraesCS6B01G351000 chr7B 76.585 205 32 14 2048 2241 22463392 22463591 9.730000e-17 99.0
28 TraesCS6B01G351000 chr7B 79.394 165 7 10 1049 1212 634763225 634763363 1.630000e-14 91.6
29 TraesCS6B01G351000 chr7D 76.786 1456 261 57 1838 3238 124166610 124165177 0.000000e+00 745.0
30 TraesCS6B01G351000 chr7D 73.958 1367 291 53 1829 3158 124023081 124021743 3.820000e-135 492.0
31 TraesCS6B01G351000 chr7D 75.328 839 167 34 2337 3158 124029719 124030534 2.410000e-97 366.0
32 TraesCS6B01G351000 chr7D 89.362 188 13 5 3425 3609 582297420 582297237 3.310000e-56 230.0
33 TraesCS6B01G351000 chr7D 76.812 414 88 8 1829 2238 124029202 124029611 4.280000e-55 226.0
34 TraesCS6B01G351000 chr7D 87.770 139 10 3 3468 3599 602397967 602398105 5.690000e-34 156.0
35 TraesCS6B01G351000 chr7D 84.848 99 10 3 3438 3533 60130260 60130164 1.260000e-15 95.3
36 TraesCS6B01G351000 chr7A 76.738 1453 267 51 1838 3238 126794120 126792687 0.000000e+00 745.0
37 TraesCS6B01G351000 chr7A 74.803 1266 254 52 1829 3054 126783914 126785154 1.050000e-140 510.0
38 TraesCS6B01G351000 chr7A 74.582 838 172 34 2340 3158 126775220 126774405 3.170000e-86 329.0
39 TraesCS6B01G351000 chr7A 77.778 405 82 7 1838 2238 126775731 126775331 4.250000e-60 243.0
40 TraesCS6B01G351000 chr7A 91.667 156 7 5 989 1138 675923838 675923683 1.200000e-50 211.0
41 TraesCS6B01G351000 chr1B 90.040 251 16 6 989 1233 644364917 644364670 2.470000e-82 316.0
42 TraesCS6B01G351000 chr1B 85.507 138 17 3 3473 3607 673414492 673414355 1.590000e-29 141.0
43 TraesCS6B01G351000 chr1B 82.258 186 7 9 1048 1233 8150519 8150360 2.060000e-28 137.0
44 TraesCS6B01G351000 chr2B 90.830 229 12 6 995 1217 669447517 669447292 8.930000e-77 298.0
45 TraesCS6B01G351000 chr2B 88.393 224 17 6 989 1206 84773553 84773333 1.170000e-65 261.0
46 TraesCS6B01G351000 chr2B 96.241 133 2 2 3471 3602 648073380 648073250 9.260000e-52 215.0
47 TraesCS6B01G351000 chr4A 86.026 229 29 2 1967 2193 598783976 598783749 4.250000e-60 243.0
48 TraesCS6B01G351000 chrUn 83.772 228 35 2 1967 2193 344899135 344898909 9.260000e-52 215.0
49 TraesCS6B01G351000 chr4B 83.333 234 37 2 1961 2193 7482519 7482751 9.260000e-52 215.0
50 TraesCS6B01G351000 chr4B 78.808 151 22 6 2888 3033 191789673 191789818 4.520000e-15 93.5
51 TraesCS6B01G351000 chr5B 85.876 177 19 3 3427 3602 77643834 77643663 2.610000e-42 183.0
52 TraesCS6B01G351000 chr3A 89.344 122 7 3 989 1104 687598943 687598822 9.520000e-32 148.0
53 TraesCS6B01G351000 chr5A 87.705 122 9 5 989 1104 340598827 340598706 2.060000e-28 137.0
54 TraesCS6B01G351000 chr1D 86.555 119 14 2 3437 3554 391861424 391861541 3.450000e-26 130.0
55 TraesCS6B01G351000 chr5D 85.714 98 12 2 3437 3533 480810381 480810285 7.520000e-18 102.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G351000 chr6B 616425537 616429786 4249 True 7849.000000 7849 100.000000 1 4250 1 chr6B.!!$R2 4249
1 TraesCS6B01G351000 chr6D 410038864 410042533 3669 True 866.380000 2591 93.514200 398 3987 5 chr6D.!!$R5 3589
2 TraesCS6B01G351000 chr6D 410054052 410054553 501 True 658.000000 658 90.855000 1 487 1 chr6D.!!$R3 486
3 TraesCS6B01G351000 chr6A 555358224 555361247 3023 False 1210.966667 2542 89.779333 497 3436 3 chr6A.!!$F3 2939
4 TraesCS6B01G351000 chr7B 85841526 85842935 1409 True 767.000000 767 76.971000 1838 3238 1 chr7B.!!$R1 1400
5 TraesCS6B01G351000 chr7B 85823078 85824315 1237 False 459.000000 459 74.030000 1829 3054 1 chr7B.!!$F2 1225
6 TraesCS6B01G351000 chr7D 124165177 124166610 1433 True 745.000000 745 76.786000 1838 3238 1 chr7D.!!$R3 1400
7 TraesCS6B01G351000 chr7D 124021743 124023081 1338 True 492.000000 492 73.958000 1829 3158 1 chr7D.!!$R2 1329
8 TraesCS6B01G351000 chr7D 124029202 124030534 1332 False 296.000000 366 76.070000 1829 3158 2 chr7D.!!$F2 1329
9 TraesCS6B01G351000 chr7A 126792687 126794120 1433 True 745.000000 745 76.738000 1838 3238 1 chr7A.!!$R1 1400
10 TraesCS6B01G351000 chr7A 126783914 126785154 1240 False 510.000000 510 74.803000 1829 3054 1 chr7A.!!$F1 1225
11 TraesCS6B01G351000 chr7A 126774405 126775731 1326 True 286.000000 329 76.180000 1838 3158 2 chr7A.!!$R3 1320

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.106708 TCAGAATATGGCGTGCCCTC 59.893 55.0 8.69 0.12 34.56 4.30 F
967 1164 0.168128 GCAACGGCGTCATAAGCTTT 59.832 50.0 15.17 0.00 34.52 3.51 F
1654 1900 0.038166 GCATCTCCAAACCCCAGTCA 59.962 55.0 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1543 1787 0.109319 GGCCGACGTGCAAAATCAAT 60.109 50.0 0.0 0.00 0.00 2.57 R
2445 2804 0.613572 TGTAGGTGTCCATCCTCGCA 60.614 55.0 0.0 0.00 36.60 5.10 R
3532 3926 0.261991 ACGCCCTCATCCTAGGAAGA 59.738 55.0 17.3 16.38 39.15 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.246719 AGGTGCTGTTCAAGTCAGAC 57.753 50.000 0.00 0.00 35.20 3.51
42 43 1.213733 CCGCGCTCATGTCATCTGAG 61.214 60.000 5.56 0.00 42.47 3.35
173 174 1.093159 GGGCAGATCAGAAAGCACTG 58.907 55.000 0.00 0.00 39.02 3.66
176 177 0.725686 CAGATCAGAAAGCACTGCCG 59.274 55.000 0.00 0.00 37.75 5.69
183 184 0.594796 GAAAGCACTGCCGGTTTGTG 60.595 55.000 15.74 15.74 36.76 3.33
202 203 3.496884 TGTGAATTAACCAGCTCACGAAC 59.503 43.478 0.00 0.00 40.87 3.95
228 229 0.106708 TCAGAATATGGCGTGCCCTC 59.893 55.000 8.69 0.12 34.56 4.30
251 252 4.175787 TCTTAAGTTCTTGACTCCTCGC 57.824 45.455 1.63 0.00 37.72 5.03
276 277 6.079424 ACCGAGAGTAATCAGAATAAGCTC 57.921 41.667 0.00 0.00 0.00 4.09
291 292 1.209383 GCTCGTGCTCTCGTGTGTA 59.791 57.895 1.41 0.00 36.03 2.90
305 306 6.789262 TCTCGTGTGTACTAGCTAAATTACC 58.211 40.000 0.00 0.00 0.00 2.85
315 316 3.418047 AGCTAAATTACCGGTGCTGTTT 58.582 40.909 19.93 14.37 0.00 2.83
367 368 9.959749 GGTTCATTCTTTGTTTTACATCTGTAA 57.040 29.630 0.00 0.00 38.60 2.41
384 385 9.903682 ACATCTGTAATTGAATCTTTTCTGTTG 57.096 29.630 0.00 0.00 32.78 3.33
389 390 9.950680 TGTAATTGAATCTTTTCTGTTGACTTC 57.049 29.630 0.00 0.00 32.78 3.01
390 391 9.107367 GTAATTGAATCTTTTCTGTTGACTTCG 57.893 33.333 0.00 0.00 32.78 3.79
435 452 4.866486 GCTAAAATGGGAATTTCAGCACTG 59.134 41.667 2.17 0.00 0.00 3.66
591 750 1.017387 GCAAGTGGGGCGAAAGATAG 58.983 55.000 0.00 0.00 0.00 2.08
592 751 1.406887 GCAAGTGGGGCGAAAGATAGA 60.407 52.381 0.00 0.00 0.00 1.98
593 752 2.555199 CAAGTGGGGCGAAAGATAGAG 58.445 52.381 0.00 0.00 0.00 2.43
594 753 2.160721 AGTGGGGCGAAAGATAGAGA 57.839 50.000 0.00 0.00 0.00 3.10
623 782 3.994392 GGTTCAGTTCGTTTAGCATCAGA 59.006 43.478 0.00 0.00 0.00 3.27
639 798 2.089201 TCAGAACTCGGCTCGTGATTA 58.911 47.619 4.13 0.00 0.00 1.75
641 800 2.093106 AGAACTCGGCTCGTGATTAGT 58.907 47.619 4.13 0.00 0.00 2.24
683 848 1.810030 GATGAACCGTGGACTCGCC 60.810 63.158 0.00 0.00 37.10 5.54
740 905 9.445878 CCAGTACTATCCTACATTATTCTACGA 57.554 37.037 0.00 0.00 0.00 3.43
756 921 9.541143 TTATTCTACGATGTGATTAATTGCTCA 57.459 29.630 0.00 0.00 0.00 4.26
771 936 3.213206 TGCTCATGTCCTGTTTTCAGT 57.787 42.857 0.00 0.00 45.68 3.41
772 937 4.350368 TGCTCATGTCCTGTTTTCAGTA 57.650 40.909 0.00 0.00 45.68 2.74
773 938 4.065088 TGCTCATGTCCTGTTTTCAGTAC 58.935 43.478 0.00 0.00 45.68 2.73
887 1069 4.524318 CCGCGCCTAATCCCGTGT 62.524 66.667 0.00 0.00 33.49 4.49
890 1072 1.300697 GCGCCTAATCCCGTGTAGG 60.301 63.158 0.00 0.00 40.03 3.18
893 1076 2.523440 CCTAATCCCGTGTAGGCCA 58.477 57.895 5.01 0.00 39.21 5.36
906 1089 2.124507 TAGGCCAGCCGCAGTTTCTT 62.125 55.000 5.01 0.00 41.95 2.52
907 1090 2.256461 GCCAGCCGCAGTTTCTTG 59.744 61.111 0.00 0.00 37.47 3.02
908 1091 2.256461 CCAGCCGCAGTTTCTTGC 59.744 61.111 0.00 0.00 40.67 4.01
909 1092 2.256461 CAGCCGCAGTTTCTTGCC 59.744 61.111 0.00 0.00 41.01 4.52
910 1093 2.113986 AGCCGCAGTTTCTTGCCT 59.886 55.556 0.00 0.00 41.01 4.75
914 1097 2.653115 GCAGTTTCTTGCCTGCCC 59.347 61.111 0.24 0.00 46.55 5.36
915 1098 2.935740 GCAGTTTCTTGCCTGCCCC 61.936 63.158 0.24 0.00 46.55 5.80
916 1099 1.228675 CAGTTTCTTGCCTGCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
917 1100 1.228675 AGTTTCTTGCCTGCCCCTG 60.229 57.895 0.00 0.00 0.00 4.45
918 1101 2.601367 TTTCTTGCCTGCCCCTGC 60.601 61.111 0.00 0.00 38.26 4.85
919 1102 3.150903 TTTCTTGCCTGCCCCTGCT 62.151 57.895 0.00 0.00 38.71 4.24
921 1104 2.124403 CTTGCCTGCCCCTGCTAG 60.124 66.667 0.00 0.00 38.71 3.42
922 1105 4.431131 TTGCCTGCCCCTGCTAGC 62.431 66.667 8.10 8.10 38.71 3.42
926 1109 1.839191 CCTGCCCCTGCTAGCAATA 59.161 57.895 19.86 2.61 38.82 1.90
927 1110 0.250640 CCTGCCCCTGCTAGCAATAG 60.251 60.000 19.86 10.77 38.82 1.73
931 1114 2.978978 TGCCCCTGCTAGCAATAGATAA 59.021 45.455 19.86 0.00 35.69 1.75
933 1116 4.006319 GCCCCTGCTAGCAATAGATAAAG 58.994 47.826 19.86 3.28 33.53 1.85
939 1122 6.463614 CCTGCTAGCAATAGATAAAGAGTGGT 60.464 42.308 19.86 0.00 0.00 4.16
940 1123 6.889198 TGCTAGCAATAGATAAAGAGTGGTT 58.111 36.000 16.84 0.00 0.00 3.67
952 1135 2.171489 GAGTGGTTTCGCCTCGCAAC 62.171 60.000 0.00 0.00 38.35 4.17
967 1164 0.168128 GCAACGGCGTCATAAGCTTT 59.832 50.000 15.17 0.00 34.52 3.51
975 1172 3.439129 GGCGTCATAAGCTTTAGTTGGTT 59.561 43.478 3.20 0.00 34.52 3.67
984 1181 2.354403 GCTTTAGTTGGTTAGCCGAGGA 60.354 50.000 0.00 0.00 37.67 3.71
1048 1256 3.749064 GCGTCACGGAGCAGGAGA 61.749 66.667 0.00 0.00 0.00 3.71
1160 1368 4.123506 CGGAAGAAGAATAAGAAGAGGCC 58.876 47.826 0.00 0.00 0.00 5.19
1163 1371 5.454045 GGAAGAAGAATAAGAAGAGGCCGAT 60.454 44.000 0.00 0.00 0.00 4.18
1262 1470 2.049433 CCTTCTTGTCGACGGCGT 60.049 61.111 14.65 14.65 38.98 5.68
1396 1617 5.063180 AGTATGTGTTTCGATCGTGGTAA 57.937 39.130 15.94 0.00 0.00 2.85
1407 1628 3.855950 CGATCGTGGTAAACTGGTAGTTC 59.144 47.826 7.03 0.00 37.47 3.01
1433 1654 9.482627 CTAATCTTAGACCATAGATTTGTCCAC 57.517 37.037 0.00 0.00 40.55 4.02
1479 1716 3.483954 AGCATCGGCAGCTGTAATT 57.516 47.368 16.64 0.00 44.61 1.40
1541 1785 8.073355 CTGAAAGTTAGCCTACCGTTATTATG 57.927 38.462 0.00 0.00 0.00 1.90
1542 1786 6.480981 TGAAAGTTAGCCTACCGTTATTATGC 59.519 38.462 0.00 0.00 0.00 3.14
1543 1787 5.540400 AGTTAGCCTACCGTTATTATGCA 57.460 39.130 0.00 0.00 0.00 3.96
1544 1788 6.110411 AGTTAGCCTACCGTTATTATGCAT 57.890 37.500 3.79 3.79 0.00 3.96
1545 1789 6.531021 AGTTAGCCTACCGTTATTATGCATT 58.469 36.000 3.54 0.00 0.00 3.56
1546 1790 6.426937 AGTTAGCCTACCGTTATTATGCATTG 59.573 38.462 3.54 0.00 0.00 2.82
1547 1791 4.968259 AGCCTACCGTTATTATGCATTGA 58.032 39.130 3.54 0.00 0.00 2.57
1548 1792 5.560724 AGCCTACCGTTATTATGCATTGAT 58.439 37.500 3.54 2.27 0.00 2.57
1549 1793 6.003950 AGCCTACCGTTATTATGCATTGATT 58.996 36.000 3.54 0.00 0.00 2.57
1550 1794 6.490040 AGCCTACCGTTATTATGCATTGATTT 59.510 34.615 3.54 0.00 0.00 2.17
1551 1795 7.014230 AGCCTACCGTTATTATGCATTGATTTT 59.986 33.333 3.54 0.00 0.00 1.82
1552 1796 7.114811 GCCTACCGTTATTATGCATTGATTTTG 59.885 37.037 3.54 0.00 0.00 2.44
1553 1797 6.826893 ACCGTTATTATGCATTGATTTTGC 57.173 33.333 3.54 0.00 40.55 3.68
1559 1803 1.684142 TGCATTGATTTTGCACGTCG 58.316 45.000 0.00 0.00 44.73 5.12
1573 1817 2.024868 CGTCGGCCGTGAATGTTCA 61.025 57.895 27.15 0.00 34.20 3.18
1587 1831 6.713762 TGAATGTTCACAACCTTTCTCAAT 57.286 33.333 0.00 0.00 31.01 2.57
1588 1832 6.506147 TGAATGTTCACAACCTTTCTCAATG 58.494 36.000 0.00 0.00 31.01 2.82
1589 1833 6.320926 TGAATGTTCACAACCTTTCTCAATGA 59.679 34.615 0.00 0.00 31.01 2.57
1590 1834 6.713762 ATGTTCACAACCTTTCTCAATGAA 57.286 33.333 0.00 0.00 0.00 2.57
1591 1835 6.522625 TGTTCACAACCTTTCTCAATGAAA 57.477 33.333 0.00 0.00 41.85 2.69
1592 1836 7.111247 TGTTCACAACCTTTCTCAATGAAAT 57.889 32.000 0.00 0.00 42.96 2.17
1593 1837 7.555087 TGTTCACAACCTTTCTCAATGAAATT 58.445 30.769 0.00 0.00 42.96 1.82
1603 1847 8.239998 CCTTTCTCAATGAAATTAACTGACCTC 58.760 37.037 0.00 0.00 42.96 3.85
1654 1900 0.038166 GCATCTCCAAACCCCAGTCA 59.962 55.000 0.00 0.00 0.00 3.41
1705 1977 0.663153 GCCCCATGCGTAAATCTGAC 59.337 55.000 0.00 0.00 0.00 3.51
1795 2116 2.115052 TGCATGCAGGTTCCGGTT 59.885 55.556 18.46 0.00 0.00 4.44
2315 2657 0.180406 AAGAACAAGGTGCTCACGGT 59.820 50.000 0.00 0.00 0.00 4.83
2565 2924 2.722201 CCTCGGCCGCTACCTCTTT 61.722 63.158 23.51 0.00 0.00 2.52
3313 3704 8.169268 CCAAACTCGATCACAAGTAGTAAAATC 58.831 37.037 0.00 0.00 0.00 2.17
3314 3705 8.708742 CAAACTCGATCACAAGTAGTAAAATCA 58.291 33.333 0.00 0.00 0.00 2.57
3317 3708 9.517609 ACTCGATCACAAGTAGTAAAATCATAC 57.482 33.333 0.00 0.00 0.00 2.39
3345 3739 8.661352 AGAATTTAAGATGGGTTTTGTTTGTG 57.339 30.769 0.00 0.00 0.00 3.33
3364 3758 1.000506 TGTACTCTTCTTGCGGGTGTC 59.999 52.381 0.00 0.00 0.00 3.67
3381 3775 5.010282 GGGTGTCTCATGGTTAAAATCACT 58.990 41.667 0.00 0.00 0.00 3.41
3386 3780 7.173218 GTGTCTCATGGTTAAAATCACTTCTCA 59.827 37.037 0.00 0.00 0.00 3.27
3401 3795 4.216902 CACTTCTCAAATCCAGACATGCAA 59.783 41.667 0.00 0.00 0.00 4.08
3452 3846 5.305585 TGAAAAAGGGTCTGTCTATGTCAC 58.694 41.667 0.00 0.00 0.00 3.67
3453 3847 4.974645 AAAAGGGTCTGTCTATGTCACA 57.025 40.909 0.00 0.00 0.00 3.58
3455 3849 4.744795 AAGGGTCTGTCTATGTCACATC 57.255 45.455 0.00 0.00 0.00 3.06
3456 3850 3.987745 AGGGTCTGTCTATGTCACATCT 58.012 45.455 0.00 0.00 0.00 2.90
3458 3852 5.136828 AGGGTCTGTCTATGTCACATCTAG 58.863 45.833 0.00 0.00 0.00 2.43
3460 3854 5.772672 GGGTCTGTCTATGTCACATCTAGAT 59.227 44.000 0.00 0.00 0.00 1.98
3461 3855 6.294453 GGGTCTGTCTATGTCACATCTAGATG 60.294 46.154 27.63 27.63 44.15 2.90
3494 3888 8.561738 TTATCTCACATCTAACTTTTTCACCC 57.438 34.615 0.00 0.00 0.00 4.61
3495 3889 6.187727 TCTCACATCTAACTTTTTCACCCT 57.812 37.500 0.00 0.00 0.00 4.34
3496 3890 6.601332 TCTCACATCTAACTTTTTCACCCTT 58.399 36.000 0.00 0.00 0.00 3.95
3497 3891 6.486657 TCTCACATCTAACTTTTTCACCCTTG 59.513 38.462 0.00 0.00 0.00 3.61
3499 3893 7.004086 TCACATCTAACTTTTTCACCCTTGAT 58.996 34.615 0.00 0.00 0.00 2.57
3500 3894 7.505585 TCACATCTAACTTTTTCACCCTTGATT 59.494 33.333 0.00 0.00 0.00 2.57
3501 3895 8.143835 CACATCTAACTTTTTCACCCTTGATTT 58.856 33.333 0.00 0.00 0.00 2.17
3502 3896 8.704668 ACATCTAACTTTTTCACCCTTGATTTT 58.295 29.630 0.00 0.00 0.00 1.82
3503 3897 9.546428 CATCTAACTTTTTCACCCTTGATTTTT 57.454 29.630 0.00 0.00 0.00 1.94
3528 3922 8.876275 TTTTTGAAAAGTCTCTCATGGATTTG 57.124 30.769 0.00 0.00 0.00 2.32
3529 3923 7.587037 TTTGAAAAGTCTCTCATGGATTTGT 57.413 32.000 0.00 0.00 0.00 2.83
3530 3924 7.587037 TTGAAAAGTCTCTCATGGATTTGTT 57.413 32.000 0.00 0.00 0.00 2.83
3531 3925 7.587037 TGAAAAGTCTCTCATGGATTTGTTT 57.413 32.000 0.00 0.00 0.00 2.83
3532 3926 8.010733 TGAAAAGTCTCTCATGGATTTGTTTT 57.989 30.769 0.00 0.00 0.00 2.43
3533 3927 8.137437 TGAAAAGTCTCTCATGGATTTGTTTTC 58.863 33.333 0.00 3.97 33.05 2.29
3534 3928 7.830099 AAAGTCTCTCATGGATTTGTTTTCT 57.170 32.000 0.00 0.00 0.00 2.52
3535 3929 7.830099 AAGTCTCTCATGGATTTGTTTTCTT 57.170 32.000 0.00 0.00 0.00 2.52
3536 3930 7.446001 AGTCTCTCATGGATTTGTTTTCTTC 57.554 36.000 0.00 0.00 0.00 2.87
3537 3931 6.432472 AGTCTCTCATGGATTTGTTTTCTTCC 59.568 38.462 0.00 0.00 0.00 3.46
3538 3932 6.432472 GTCTCTCATGGATTTGTTTTCTTCCT 59.568 38.462 0.00 0.00 0.00 3.36
3539 3933 7.607991 GTCTCTCATGGATTTGTTTTCTTCCTA 59.392 37.037 0.00 0.00 0.00 2.94
3540 3934 7.826252 TCTCTCATGGATTTGTTTTCTTCCTAG 59.174 37.037 0.00 0.00 0.00 3.02
3541 3935 6.886459 TCTCATGGATTTGTTTTCTTCCTAGG 59.114 38.462 0.82 0.82 0.00 3.02
3542 3936 6.789268 TCATGGATTTGTTTTCTTCCTAGGA 58.211 36.000 7.62 7.62 0.00 2.94
3543 3937 7.413446 TCATGGATTTGTTTTCTTCCTAGGAT 58.587 34.615 13.57 0.00 0.00 3.24
3544 3938 7.340232 TCATGGATTTGTTTTCTTCCTAGGATG 59.660 37.037 13.57 15.48 0.00 3.51
3545 3939 6.789268 TGGATTTGTTTTCTTCCTAGGATGA 58.211 36.000 20.63 20.63 0.00 2.92
3546 3940 6.886459 TGGATTTGTTTTCTTCCTAGGATGAG 59.114 38.462 22.61 14.37 31.47 2.90
3547 3941 6.319911 GGATTTGTTTTCTTCCTAGGATGAGG 59.680 42.308 22.61 10.29 38.03 3.86
3548 3942 4.844349 TGTTTTCTTCCTAGGATGAGGG 57.156 45.455 22.61 8.20 37.20 4.30
3549 3943 3.054361 TGTTTTCTTCCTAGGATGAGGGC 60.054 47.826 22.61 17.18 37.20 5.19
3550 3944 1.414158 TTCTTCCTAGGATGAGGGCG 58.586 55.000 22.61 3.79 37.20 6.13
3551 3945 0.261991 TCTTCCTAGGATGAGGGCGT 59.738 55.000 20.63 0.00 37.20 5.68
3552 3946 1.123928 CTTCCTAGGATGAGGGCGTT 58.876 55.000 17.85 0.00 37.20 4.84
3553 3947 2.091499 TCTTCCTAGGATGAGGGCGTTA 60.091 50.000 20.63 0.00 37.20 3.18
3554 3948 1.996798 TCCTAGGATGAGGGCGTTAG 58.003 55.000 7.62 0.00 37.20 2.34
3555 3949 1.497716 TCCTAGGATGAGGGCGTTAGA 59.502 52.381 7.62 0.00 37.20 2.10
3556 3950 2.110188 TCCTAGGATGAGGGCGTTAGAT 59.890 50.000 7.62 0.00 37.20 1.98
3557 3951 2.232452 CCTAGGATGAGGGCGTTAGATG 59.768 54.545 1.05 0.00 32.39 2.90
3558 3952 1.794714 AGGATGAGGGCGTTAGATGT 58.205 50.000 0.00 0.00 0.00 3.06
3559 3953 1.414181 AGGATGAGGGCGTTAGATGTG 59.586 52.381 0.00 0.00 0.00 3.21
3560 3954 1.412710 GGATGAGGGCGTTAGATGTGA 59.587 52.381 0.00 0.00 0.00 3.58
3561 3955 2.546795 GGATGAGGGCGTTAGATGTGAG 60.547 54.545 0.00 0.00 0.00 3.51
3562 3956 1.847328 TGAGGGCGTTAGATGTGAGA 58.153 50.000 0.00 0.00 0.00 3.27
3563 3957 2.388735 TGAGGGCGTTAGATGTGAGAT 58.611 47.619 0.00 0.00 0.00 2.75
3564 3958 3.562182 TGAGGGCGTTAGATGTGAGATA 58.438 45.455 0.00 0.00 0.00 1.98
3565 3959 3.958147 TGAGGGCGTTAGATGTGAGATAA 59.042 43.478 0.00 0.00 0.00 1.75
3566 3960 4.588951 TGAGGGCGTTAGATGTGAGATAAT 59.411 41.667 0.00 0.00 0.00 1.28
3567 3961 5.773176 TGAGGGCGTTAGATGTGAGATAATA 59.227 40.000 0.00 0.00 0.00 0.98
3568 3962 6.437477 TGAGGGCGTTAGATGTGAGATAATAT 59.563 38.462 0.00 0.00 0.00 1.28
3569 3963 6.868622 AGGGCGTTAGATGTGAGATAATATC 58.131 40.000 0.00 0.00 0.00 1.63
3570 3964 6.665680 AGGGCGTTAGATGTGAGATAATATCT 59.334 38.462 1.83 1.83 43.70 1.98
3649 4043 9.696917 AAATTTCAAAACTAGCAGTTAAGATGG 57.303 29.630 2.60 0.00 37.47 3.51
3655 4049 5.677319 ACTAGCAGTTAAGATGGCTACAA 57.323 39.130 0.00 0.00 37.79 2.41
3660 4054 6.472887 AGCAGTTAAGATGGCTACAAAGTTA 58.527 36.000 0.00 0.00 34.25 2.24
3661 4055 6.595716 AGCAGTTAAGATGGCTACAAAGTTAG 59.404 38.462 0.00 0.00 34.25 2.34
3662 4056 6.371825 GCAGTTAAGATGGCTACAAAGTTAGT 59.628 38.462 0.00 0.00 0.00 2.24
3665 4059 8.376270 AGTTAAGATGGCTACAAAGTTAGTCTT 58.624 33.333 0.00 0.00 38.10 3.01
3666 4060 9.000486 GTTAAGATGGCTACAAAGTTAGTCTTT 58.000 33.333 0.00 0.00 45.96 2.52
3670 4064 8.154856 AGATGGCTACAAAGTTAGTCTTTAACA 58.845 33.333 0.56 0.00 43.57 2.41
3671 4065 7.486802 TGGCTACAAAGTTAGTCTTTAACAC 57.513 36.000 0.56 0.00 43.57 3.32
3673 4067 7.225931 TGGCTACAAAGTTAGTCTTTAACACTG 59.774 37.037 0.56 0.22 43.57 3.66
3674 4068 7.226128 GGCTACAAAGTTAGTCTTTAACACTGT 59.774 37.037 0.56 5.12 43.57 3.55
3675 4069 8.062448 GCTACAAAGTTAGTCTTTAACACTGTG 58.938 37.037 6.19 6.19 43.57 3.66
3677 4071 8.331730 ACAAAGTTAGTCTTTAACACTGTGTT 57.668 30.769 27.14 27.14 43.57 3.32
3678 4072 8.448615 ACAAAGTTAGTCTTTAACACTGTGTTC 58.551 33.333 27.73 14.19 43.57 3.18
3679 4073 8.665685 CAAAGTTAGTCTTTAACACTGTGTTCT 58.334 33.333 27.73 19.87 43.57 3.01
3680 4074 9.880157 AAAGTTAGTCTTTAACACTGTGTTCTA 57.120 29.630 27.73 18.95 43.59 2.10
3681 4075 8.868635 AGTTAGTCTTTAACACTGTGTTCTAC 57.131 34.615 27.73 19.81 40.22 2.59
3689 4298 8.876275 TTTAACACTGTGTTCTACTACGAATT 57.124 30.769 27.73 3.94 40.22 2.17
3699 4308 6.070653 TGTTCTACTACGAATTACATGGGGTT 60.071 38.462 0.00 0.00 0.00 4.11
3721 4330 3.732892 GCAGCCGTTAAGCGCCAA 61.733 61.111 2.29 0.00 39.71 4.52
3724 4333 2.033194 AGCCGTTAAGCGCCAAGTC 61.033 57.895 2.29 0.00 39.71 3.01
3752 4363 1.665916 CTGCGGATATGGCCTGTCG 60.666 63.158 3.32 2.12 0.00 4.35
3782 4393 4.104143 GGCGAACCGAGGTATGTG 57.896 61.111 0.00 0.00 0.00 3.21
3802 4413 4.127171 GTGGTGTGTTTCAGAAGCTTCTA 58.873 43.478 28.02 11.81 35.34 2.10
3804 4415 5.239525 GTGGTGTGTTTCAGAAGCTTCTAAT 59.760 40.000 28.02 4.62 35.34 1.73
3837 4448 1.291877 GAGTGGTGTGCAGGCTAACG 61.292 60.000 0.00 0.00 0.00 3.18
3845 4456 0.901114 TGCAGGCTAACGGAGGTGTA 60.901 55.000 0.00 0.00 0.00 2.90
3856 4467 3.310860 GAGGTGTAGTGCGTGGGGG 62.311 68.421 0.00 0.00 0.00 5.40
3906 4517 1.687494 GCTCGGCATCTGTGAACGTC 61.687 60.000 0.00 0.00 0.00 4.34
3927 4538 0.316841 TTTCACCATTTTGGAGGCGC 59.683 50.000 0.00 0.00 40.96 6.53
3956 4567 1.160137 GTCCATCACTTGCACACTCC 58.840 55.000 0.00 0.00 0.00 3.85
3968 4579 1.271597 GCACACTCCTGGATCCAGTTT 60.272 52.381 34.49 18.70 42.15 2.66
3998 4609 1.301795 GCCTAAGGCTATGTCGGGC 60.302 63.158 0.00 0.00 46.69 6.13
3999 4610 2.733319 GCCTAAGGCTATGTCGGGCC 62.733 65.000 0.00 0.00 46.69 5.80
4003 4614 3.224324 GGCTATGTCGGGCCGAGA 61.224 66.667 31.98 30.24 38.91 4.04
4004 4615 2.336809 GCTATGTCGGGCCGAGAG 59.663 66.667 31.98 25.82 36.23 3.20
4005 4616 2.194212 GCTATGTCGGGCCGAGAGA 61.194 63.158 31.98 25.28 36.23 3.10
4006 4617 1.953017 CTATGTCGGGCCGAGAGAG 59.047 63.158 29.32 29.32 36.23 3.20
4007 4618 1.519751 CTATGTCGGGCCGAGAGAGG 61.520 65.000 32.73 20.17 35.41 3.69
4008 4619 2.978298 TATGTCGGGCCGAGAGAGGG 62.978 65.000 31.98 0.00 36.23 4.30
4027 4638 3.824510 GTCGCCGTCGTCGCTTTC 61.825 66.667 0.00 0.00 36.96 2.62
4030 4641 3.179939 GCCGTCGTCGCTTTCCTC 61.180 66.667 0.00 0.00 35.54 3.71
4031 4642 2.567049 CCGTCGTCGCTTTCCTCT 59.433 61.111 0.00 0.00 35.54 3.69
4032 4643 1.080705 CCGTCGTCGCTTTCCTCTT 60.081 57.895 0.00 0.00 35.54 2.85
4033 4644 0.666577 CCGTCGTCGCTTTCCTCTTT 60.667 55.000 0.00 0.00 35.54 2.52
4034 4645 0.435008 CGTCGTCGCTTTCCTCTTTG 59.565 55.000 0.00 0.00 0.00 2.77
4035 4646 0.790814 GTCGTCGCTTTCCTCTTTGG 59.209 55.000 0.00 0.00 37.10 3.28
4036 4647 0.320421 TCGTCGCTTTCCTCTTTGGG 60.320 55.000 0.00 0.00 36.20 4.12
4037 4648 0.602905 CGTCGCTTTCCTCTTTGGGT 60.603 55.000 0.00 0.00 36.20 4.51
4038 4649 0.875059 GTCGCTTTCCTCTTTGGGTG 59.125 55.000 0.00 0.00 36.20 4.61
4039 4650 0.472471 TCGCTTTCCTCTTTGGGTGT 59.528 50.000 0.00 0.00 36.20 4.16
4040 4651 0.875059 CGCTTTCCTCTTTGGGTGTC 59.125 55.000 0.00 0.00 36.20 3.67
4041 4652 0.875059 GCTTTCCTCTTTGGGTGTCG 59.125 55.000 0.00 0.00 36.20 4.35
4042 4653 0.875059 CTTTCCTCTTTGGGTGTCGC 59.125 55.000 0.00 0.00 36.20 5.19
4043 4654 0.536460 TTTCCTCTTTGGGTGTCGCC 60.536 55.000 0.00 0.00 36.20 5.54
4044 4655 1.415672 TTCCTCTTTGGGTGTCGCCT 61.416 55.000 1.66 0.00 37.43 5.52
4045 4656 1.073199 CCTCTTTGGGTGTCGCCTT 59.927 57.895 1.66 0.00 37.43 4.35
4046 4657 1.237285 CCTCTTTGGGTGTCGCCTTG 61.237 60.000 1.66 0.00 37.43 3.61
4047 4658 0.250295 CTCTTTGGGTGTCGCCTTGA 60.250 55.000 1.66 0.00 37.43 3.02
4048 4659 0.181587 TCTTTGGGTGTCGCCTTGAA 59.818 50.000 1.66 0.00 37.43 2.69
4049 4660 0.593128 CTTTGGGTGTCGCCTTGAAG 59.407 55.000 1.66 1.12 37.43 3.02
4050 4661 0.181587 TTTGGGTGTCGCCTTGAAGA 59.818 50.000 1.66 0.00 37.43 2.87
4051 4662 0.534203 TTGGGTGTCGCCTTGAAGAC 60.534 55.000 1.66 0.00 37.43 3.01
4052 4663 1.671379 GGGTGTCGCCTTGAAGACC 60.671 63.158 1.66 0.00 36.61 3.85
4053 4664 1.671379 GGTGTCGCCTTGAAGACCC 60.671 63.158 0.00 0.00 36.61 4.46
4054 4665 1.070786 GTGTCGCCTTGAAGACCCA 59.929 57.895 0.00 0.00 36.61 4.51
4055 4666 0.321653 GTGTCGCCTTGAAGACCCAT 60.322 55.000 0.00 0.00 36.61 4.00
4056 4667 0.321564 TGTCGCCTTGAAGACCCATG 60.322 55.000 0.00 0.00 36.61 3.66
4057 4668 1.026718 GTCGCCTTGAAGACCCATGG 61.027 60.000 4.14 4.14 35.24 3.66
4058 4669 1.198094 TCGCCTTGAAGACCCATGGA 61.198 55.000 15.22 0.00 34.35 3.41
4059 4670 0.107017 CGCCTTGAAGACCCATGGAT 60.107 55.000 15.22 0.00 34.35 3.41
4060 4671 1.685148 GCCTTGAAGACCCATGGATC 58.315 55.000 15.22 5.30 34.35 3.36
4061 4672 1.752084 GCCTTGAAGACCCATGGATCC 60.752 57.143 15.22 4.20 34.35 3.36
4062 4673 1.133668 CCTTGAAGACCCATGGATCCC 60.134 57.143 15.22 0.50 34.35 3.85
4063 4674 0.546122 TTGAAGACCCATGGATCCCG 59.454 55.000 15.22 0.00 0.00 5.14
4064 4675 0.620410 TGAAGACCCATGGATCCCGT 60.620 55.000 15.22 0.83 0.00 5.28
4065 4676 0.546598 GAAGACCCATGGATCCCGTT 59.453 55.000 15.22 0.00 0.00 4.44
4066 4677 0.999712 AAGACCCATGGATCCCGTTT 59.000 50.000 15.22 0.00 0.00 3.60
4067 4678 0.255890 AGACCCATGGATCCCGTTTG 59.744 55.000 15.22 1.74 0.00 2.93
4068 4679 1.379843 ACCCATGGATCCCGTTTGC 60.380 57.895 15.22 0.00 0.00 3.68
4069 4680 2.480610 CCCATGGATCCCGTTTGCG 61.481 63.158 15.22 0.00 37.95 4.85
4070 4681 2.408835 CATGGATCCCGTTTGCGC 59.591 61.111 9.90 0.00 36.67 6.09
4071 4682 2.114670 CATGGATCCCGTTTGCGCT 61.115 57.895 9.90 0.00 36.67 5.92
4072 4683 1.819632 ATGGATCCCGTTTGCGCTC 60.820 57.895 9.90 0.00 36.67 5.03
4073 4684 2.125106 GGATCCCGTTTGCGCTCT 60.125 61.111 9.73 0.00 36.67 4.09
4074 4685 2.174319 GGATCCCGTTTGCGCTCTC 61.174 63.158 9.73 0.00 36.67 3.20
4075 4686 2.125106 ATCCCGTTTGCGCTCTCC 60.125 61.111 9.73 0.00 36.67 3.71
4076 4687 2.852495 GATCCCGTTTGCGCTCTCCA 62.852 60.000 9.73 0.00 36.67 3.86
4077 4688 2.257409 ATCCCGTTTGCGCTCTCCAT 62.257 55.000 9.73 0.00 36.67 3.41
4078 4689 2.753966 CCCGTTTGCGCTCTCCATG 61.754 63.158 9.73 0.00 36.67 3.66
4079 4690 2.034879 CCGTTTGCGCTCTCCATGT 61.035 57.895 9.73 0.00 36.67 3.21
4080 4691 1.133253 CGTTTGCGCTCTCCATGTG 59.867 57.895 9.73 0.00 0.00 3.21
4081 4692 1.154150 GTTTGCGCTCTCCATGTGC 60.154 57.895 9.73 0.00 40.87 4.57
4082 4693 1.302752 TTTGCGCTCTCCATGTGCT 60.303 52.632 9.73 0.00 41.05 4.40
4083 4694 0.036483 TTTGCGCTCTCCATGTGCTA 60.036 50.000 9.73 0.00 41.05 3.49
4084 4695 0.460811 TTGCGCTCTCCATGTGCTAG 60.461 55.000 9.73 0.00 41.05 3.42
4085 4696 1.322538 TGCGCTCTCCATGTGCTAGA 61.323 55.000 9.73 0.00 41.05 2.43
4086 4697 0.033228 GCGCTCTCCATGTGCTAGAT 59.967 55.000 0.00 0.00 37.87 1.98
4087 4698 1.780806 CGCTCTCCATGTGCTAGATG 58.219 55.000 0.00 0.00 33.42 2.90
4088 4699 1.510776 GCTCTCCATGTGCTAGATGC 58.489 55.000 0.00 0.00 43.25 3.91
4089 4700 1.070445 GCTCTCCATGTGCTAGATGCT 59.930 52.381 0.00 0.00 43.37 3.79
4090 4701 2.867251 GCTCTCCATGTGCTAGATGCTC 60.867 54.545 0.00 0.00 43.37 4.26
4092 4703 2.102084 TCTCCATGTGCTAGATGCTCAC 59.898 50.000 0.00 0.00 46.07 3.51
4093 4704 1.202452 TCCATGTGCTAGATGCTCACG 60.202 52.381 0.00 0.00 46.07 4.35
4094 4705 1.202452 CCATGTGCTAGATGCTCACGA 60.202 52.381 0.00 0.00 46.07 4.35
4095 4706 1.857217 CATGTGCTAGATGCTCACGAC 59.143 52.381 0.00 0.00 46.07 4.34
4096 4707 1.177401 TGTGCTAGATGCTCACGACT 58.823 50.000 0.00 0.00 39.83 4.18
4097 4708 1.546029 TGTGCTAGATGCTCACGACTT 59.454 47.619 0.00 0.00 39.83 3.01
4098 4709 2.029020 TGTGCTAGATGCTCACGACTTT 60.029 45.455 0.00 0.00 39.83 2.66
4099 4710 2.346847 GTGCTAGATGCTCACGACTTTG 59.653 50.000 0.00 0.00 43.37 2.77
4100 4711 1.325943 GCTAGATGCTCACGACTTTGC 59.674 52.381 0.00 0.00 38.95 3.68
4101 4712 2.886081 CTAGATGCTCACGACTTTGCT 58.114 47.619 0.00 0.00 0.00 3.91
4102 4713 1.436600 AGATGCTCACGACTTTGCTG 58.563 50.000 0.00 0.00 0.00 4.41
4103 4714 1.151668 GATGCTCACGACTTTGCTGT 58.848 50.000 0.00 0.00 0.00 4.40
4104 4715 1.127582 GATGCTCACGACTTTGCTGTC 59.872 52.381 0.00 0.00 0.00 3.51
4117 4728 4.056125 CTGTCGGCAGGTGCTCGA 62.056 66.667 9.79 10.29 39.87 4.04
4127 4738 4.664677 GTGCTCGACCTGCGGTGT 62.665 66.667 4.94 0.00 41.33 4.16
4128 4739 4.357947 TGCTCGACCTGCGGTGTC 62.358 66.667 4.94 4.73 41.33 3.67
4129 4740 4.357947 GCTCGACCTGCGGTGTCA 62.358 66.667 12.71 2.36 41.33 3.58
4130 4741 2.573869 CTCGACCTGCGGTGTCAT 59.426 61.111 12.71 0.00 41.33 3.06
4131 4742 1.807165 CTCGACCTGCGGTGTCATG 60.807 63.158 12.71 0.00 41.33 3.07
4132 4743 2.815211 CGACCTGCGGTGTCATGG 60.815 66.667 12.71 0.00 35.25 3.66
4133 4744 2.347490 GACCTGCGGTGTCATGGT 59.653 61.111 4.94 0.00 35.25 3.55
4134 4745 2.032528 ACCTGCGGTGTCATGGTG 59.967 61.111 0.00 0.00 32.98 4.17
4135 4746 2.032528 CCTGCGGTGTCATGGTGT 59.967 61.111 0.00 0.00 0.00 4.16
4136 4747 2.327343 CCTGCGGTGTCATGGTGTG 61.327 63.158 0.00 0.00 0.00 3.82
4137 4748 2.281414 TGCGGTGTCATGGTGTGG 60.281 61.111 0.00 0.00 0.00 4.17
4138 4749 3.737172 GCGGTGTCATGGTGTGGC 61.737 66.667 0.00 0.00 0.00 5.01
4139 4750 3.422303 CGGTGTCATGGTGTGGCG 61.422 66.667 0.00 0.00 34.28 5.69
4140 4751 2.281484 GGTGTCATGGTGTGGCGT 60.281 61.111 0.00 0.00 34.28 5.68
4141 4752 2.325082 GGTGTCATGGTGTGGCGTC 61.325 63.158 0.00 0.00 34.28 5.19
4142 4753 2.356913 TGTCATGGTGTGGCGTCG 60.357 61.111 0.00 0.00 34.28 5.12
4143 4754 2.048597 GTCATGGTGTGGCGTCGA 60.049 61.111 0.00 0.00 0.00 4.20
4144 4755 2.094659 GTCATGGTGTGGCGTCGAG 61.095 63.158 0.00 0.00 0.00 4.04
4145 4756 2.048222 CATGGTGTGGCGTCGAGT 60.048 61.111 0.00 0.00 0.00 4.18
4146 4757 1.667830 CATGGTGTGGCGTCGAGTT 60.668 57.895 0.00 0.00 0.00 3.01
4147 4758 1.070786 ATGGTGTGGCGTCGAGTTT 59.929 52.632 0.00 0.00 0.00 2.66
4148 4759 1.227999 ATGGTGTGGCGTCGAGTTTG 61.228 55.000 0.00 0.00 0.00 2.93
4149 4760 2.604174 GGTGTGGCGTCGAGTTTGG 61.604 63.158 0.00 0.00 0.00 3.28
4150 4761 2.970324 TGTGGCGTCGAGTTTGGC 60.970 61.111 0.00 0.00 0.00 4.52
4151 4762 2.970324 GTGGCGTCGAGTTTGGCA 60.970 61.111 0.00 0.00 35.66 4.92
4152 4763 2.203084 TGGCGTCGAGTTTGGCAA 60.203 55.556 0.00 0.00 35.04 4.52
4153 4764 2.251371 GGCGTCGAGTTTGGCAAC 59.749 61.111 0.00 0.00 0.00 4.17
4154 4765 2.127758 GCGTCGAGTTTGGCAACG 60.128 61.111 0.00 0.16 38.03 4.10
4155 4766 2.591311 GCGTCGAGTTTGGCAACGA 61.591 57.895 10.98 9.09 38.03 3.85
4156 4767 1.897398 GCGTCGAGTTTGGCAACGAT 61.897 55.000 13.42 0.00 38.03 3.73
4157 4768 0.179250 CGTCGAGTTTGGCAACGATG 60.179 55.000 13.42 13.73 38.03 3.84
4158 4769 1.144969 GTCGAGTTTGGCAACGATGA 58.855 50.000 13.42 1.65 38.03 2.92
4159 4770 1.732259 GTCGAGTTTGGCAACGATGAT 59.268 47.619 13.42 0.00 38.03 2.45
4160 4771 1.731709 TCGAGTTTGGCAACGATGATG 59.268 47.619 0.00 0.00 38.03 3.07
4161 4772 1.731709 CGAGTTTGGCAACGATGATGA 59.268 47.619 0.00 0.00 38.03 2.92
4162 4773 2.352651 CGAGTTTGGCAACGATGATGAT 59.647 45.455 0.00 0.00 38.03 2.45
4163 4774 3.688272 GAGTTTGGCAACGATGATGATG 58.312 45.455 0.00 0.00 38.03 3.07
4164 4775 2.424601 AGTTTGGCAACGATGATGATGG 59.575 45.455 0.00 0.00 38.03 3.51
4165 4776 0.740149 TTGGCAACGATGATGATGGC 59.260 50.000 0.00 0.00 42.51 4.40
4166 4777 1.102809 TGGCAACGATGATGATGGCC 61.103 55.000 0.00 0.00 40.29 5.36
4167 4778 1.102809 GGCAACGATGATGATGGCCA 61.103 55.000 8.56 8.56 39.66 5.36
4168 4779 0.309922 GCAACGATGATGATGGCCAG 59.690 55.000 13.05 0.00 0.00 4.85
4169 4780 1.957668 CAACGATGATGATGGCCAGA 58.042 50.000 13.05 0.00 0.00 3.86
4170 4781 2.501261 CAACGATGATGATGGCCAGAT 58.499 47.619 13.05 5.52 0.00 2.90
4171 4782 2.180432 ACGATGATGATGGCCAGATG 57.820 50.000 13.05 0.00 0.00 2.90
4172 4783 1.271217 ACGATGATGATGGCCAGATGG 60.271 52.381 13.05 1.97 38.53 3.51
4173 4784 1.271217 CGATGATGATGGCCAGATGGT 60.271 52.381 13.05 0.00 37.57 3.55
4174 4785 2.027837 CGATGATGATGGCCAGATGGTA 60.028 50.000 13.05 0.00 37.57 3.25
4175 4786 3.607741 GATGATGATGGCCAGATGGTAG 58.392 50.000 13.05 0.00 37.57 3.18
4176 4787 1.701292 TGATGATGGCCAGATGGTAGG 59.299 52.381 13.05 0.00 37.57 3.18
4177 4788 1.004044 GATGATGGCCAGATGGTAGGG 59.996 57.143 13.05 0.00 37.57 3.53
4178 4789 0.327480 TGATGGCCAGATGGTAGGGT 60.327 55.000 13.05 0.00 37.57 4.34
4179 4790 0.109342 GATGGCCAGATGGTAGGGTG 59.891 60.000 13.05 0.00 37.57 4.61
4180 4791 0.624500 ATGGCCAGATGGTAGGGTGT 60.625 55.000 13.05 0.00 37.57 4.16
4181 4792 1.271840 TGGCCAGATGGTAGGGTGTC 61.272 60.000 0.00 0.00 37.57 3.67
4182 4793 1.271840 GGCCAGATGGTAGGGTGTCA 61.272 60.000 0.00 0.00 37.57 3.58
4183 4794 0.618458 GCCAGATGGTAGGGTGTCAA 59.382 55.000 0.00 0.00 37.57 3.18
4184 4795 1.679032 GCCAGATGGTAGGGTGTCAAC 60.679 57.143 0.00 0.00 37.57 3.18
4185 4796 1.628340 CCAGATGGTAGGGTGTCAACA 59.372 52.381 0.00 0.00 0.00 3.33
4186 4797 2.239654 CCAGATGGTAGGGTGTCAACAT 59.760 50.000 0.00 0.00 0.00 2.71
4187 4798 3.273434 CAGATGGTAGGGTGTCAACATG 58.727 50.000 0.00 0.00 0.00 3.21
4188 4799 2.239654 AGATGGTAGGGTGTCAACATGG 59.760 50.000 0.00 0.00 0.00 3.66
4189 4800 0.037590 TGGTAGGGTGTCAACATGGC 59.962 55.000 0.00 0.00 0.00 4.40
4190 4801 0.328258 GGTAGGGTGTCAACATGGCT 59.672 55.000 0.00 0.00 0.00 4.75
4191 4802 1.271926 GGTAGGGTGTCAACATGGCTT 60.272 52.381 0.00 0.00 0.00 4.35
4192 4803 2.514803 GTAGGGTGTCAACATGGCTTT 58.485 47.619 0.00 0.00 0.00 3.51
4193 4804 1.331214 AGGGTGTCAACATGGCTTTG 58.669 50.000 0.00 0.00 0.00 2.77
4194 4805 0.318120 GGGTGTCAACATGGCTTTGG 59.682 55.000 0.00 0.00 0.00 3.28
4195 4806 1.039856 GGTGTCAACATGGCTTTGGT 58.960 50.000 0.00 0.00 0.00 3.67
4196 4807 2.235016 GGTGTCAACATGGCTTTGGTA 58.765 47.619 0.00 0.00 0.00 3.25
4197 4808 2.228822 GGTGTCAACATGGCTTTGGTAG 59.771 50.000 0.00 0.00 0.00 3.18
4207 4818 2.502213 GCTTTGGTAGCCGTTTTGTT 57.498 45.000 0.00 0.00 44.48 2.83
4208 4819 2.816689 GCTTTGGTAGCCGTTTTGTTT 58.183 42.857 0.00 0.00 44.48 2.83
4209 4820 2.792674 GCTTTGGTAGCCGTTTTGTTTC 59.207 45.455 0.00 0.00 44.48 2.78
4210 4821 3.377439 CTTTGGTAGCCGTTTTGTTTCC 58.623 45.455 0.00 0.00 0.00 3.13
4211 4822 0.945813 TGGTAGCCGTTTTGTTTCCG 59.054 50.000 0.00 0.00 0.00 4.30
4212 4823 0.239082 GGTAGCCGTTTTGTTTCCGG 59.761 55.000 0.00 0.00 44.46 5.14
4215 4826 2.716864 CCGTTTTGTTTCCGGCGT 59.283 55.556 6.01 0.00 34.62 5.68
4216 4827 1.655959 CCGTTTTGTTTCCGGCGTG 60.656 57.895 6.01 0.00 34.62 5.34
4217 4828 2.290082 CGTTTTGTTTCCGGCGTGC 61.290 57.895 6.01 0.00 0.00 5.34
4218 4829 1.065109 GTTTTGTTTCCGGCGTGCT 59.935 52.632 6.01 0.00 0.00 4.40
4219 4830 0.933047 GTTTTGTTTCCGGCGTGCTC 60.933 55.000 6.01 0.00 0.00 4.26
4220 4831 2.381665 TTTTGTTTCCGGCGTGCTCG 62.382 55.000 6.01 3.31 40.37 5.03
4221 4832 3.793775 TTGTTTCCGGCGTGCTCGA 62.794 57.895 13.13 0.00 39.71 4.04
4222 4833 2.813908 GTTTCCGGCGTGCTCGAT 60.814 61.111 13.13 0.00 39.71 3.59
4223 4834 1.517694 GTTTCCGGCGTGCTCGATA 60.518 57.895 13.13 0.00 39.71 2.92
4224 4835 1.226859 TTTCCGGCGTGCTCGATAG 60.227 57.895 13.13 1.83 39.71 2.08
4241 4852 4.804139 TCGATAGAATTTCCTTTGTCTCGC 59.196 41.667 0.00 0.00 46.15 5.03
4242 4853 4.025647 CGATAGAATTTCCTTTGTCTCGCC 60.026 45.833 0.00 0.00 39.76 5.54
4243 4854 3.140325 AGAATTTCCTTTGTCTCGCCA 57.860 42.857 0.00 0.00 0.00 5.69
4244 4855 3.690460 AGAATTTCCTTTGTCTCGCCAT 58.310 40.909 0.00 0.00 0.00 4.40
4245 4856 3.441572 AGAATTTCCTTTGTCTCGCCATG 59.558 43.478 0.00 0.00 0.00 3.66
4246 4857 2.270352 TTTCCTTTGTCTCGCCATGT 57.730 45.000 0.00 0.00 0.00 3.21
4247 4858 2.270352 TTCCTTTGTCTCGCCATGTT 57.730 45.000 0.00 0.00 0.00 2.71
4248 4859 2.270352 TCCTTTGTCTCGCCATGTTT 57.730 45.000 0.00 0.00 0.00 2.83
4249 4860 2.582052 TCCTTTGTCTCGCCATGTTTT 58.418 42.857 0.00 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.891060 GCGGCGTCTGACTTGAACAG 61.891 60.000 9.37 0.00 36.80 3.16
21 22 3.993234 GATGACATGAGCGCGGCG 61.993 66.667 19.62 19.62 0.00 6.46
42 43 1.134367 TCCACCAATCTCGATGTCGTC 59.866 52.381 2.04 0.00 40.80 4.20
163 164 0.751643 ACAAACCGGCAGTGCTTTCT 60.752 50.000 16.11 0.00 0.00 2.52
173 174 2.941428 CTGGTTAATTCACAAACCGGC 58.059 47.619 0.00 0.00 46.74 6.13
176 177 4.546570 GTGAGCTGGTTAATTCACAAACC 58.453 43.478 0.00 1.50 44.51 3.27
183 184 2.093783 CCGTTCGTGAGCTGGTTAATTC 59.906 50.000 0.00 0.00 0.00 2.17
202 203 1.073964 CGCCATATTCTGATCAGCCG 58.926 55.000 18.36 7.49 0.00 5.52
228 229 4.564769 GCGAGGAGTCAAGAACTTAAGATG 59.435 45.833 10.09 3.02 38.74 2.90
251 252 6.276847 AGCTTATTCTGATTACTCTCGGTTG 58.723 40.000 0.00 0.00 0.00 3.77
276 277 1.790838 GCTAGTACACACGAGAGCACG 60.791 57.143 0.00 0.00 39.31 5.34
282 283 5.680229 CGGTAATTTAGCTAGTACACACGAG 59.320 44.000 11.31 0.00 0.00 4.18
284 285 4.736793 CCGGTAATTTAGCTAGTACACACG 59.263 45.833 0.00 5.60 0.00 4.49
291 292 3.197116 ACAGCACCGGTAATTTAGCTAGT 59.803 43.478 6.87 8.95 0.00 2.57
367 368 7.264373 ACGAAGTCAACAGAAAAGATTCAAT 57.736 32.000 0.00 0.00 29.74 2.57
383 384 5.655090 TGAAGATACCTCCATAACGAAGTCA 59.345 40.000 0.00 0.00 45.00 3.41
384 385 6.145338 TGAAGATACCTCCATAACGAAGTC 57.855 41.667 0.00 0.00 45.00 3.01
389 390 5.006746 GCAAACTGAAGATACCTCCATAACG 59.993 44.000 0.00 0.00 0.00 3.18
390 391 6.116126 AGCAAACTGAAGATACCTCCATAAC 58.884 40.000 0.00 0.00 0.00 1.89
435 452 3.984193 ATTCAGCTCCCTGCACGGC 62.984 63.158 0.00 0.00 45.94 5.68
562 721 1.080569 CCCACTTGCGCATGGTTTC 60.081 57.895 24.55 0.00 33.80 2.78
563 722 2.573083 CCCCACTTGCGCATGGTTT 61.573 57.895 24.55 4.37 33.80 3.27
583 742 5.482908 TGAACCACAGCTTCTCTATCTTTC 58.517 41.667 0.00 0.00 0.00 2.62
623 782 2.607187 CAACTAATCACGAGCCGAGTT 58.393 47.619 1.50 0.00 0.00 3.01
639 798 2.455674 TGTGATTACGCAGAGCAACT 57.544 45.000 0.00 0.00 32.49 3.16
641 800 3.750652 TCAAATGTGATTACGCAGAGCAA 59.249 39.130 0.00 0.00 39.92 3.91
683 848 3.619483 TGCATACTTTTTGGATCGTACCG 59.381 43.478 0.00 0.00 0.00 4.02
740 905 5.889853 ACAGGACATGAGCAATTAATCACAT 59.110 36.000 0.00 0.00 0.00 3.21
756 921 4.495422 CGCTAGTACTGAAAACAGGACAT 58.505 43.478 13.84 3.51 38.48 3.06
771 936 3.833645 CCTGCACCGCCGCTAGTA 61.834 66.667 0.00 0.00 0.00 1.82
887 1069 2.046314 GAAACTGCGGCTGGCCTA 60.046 61.111 3.32 0.00 42.61 3.93
890 1072 2.256461 CAAGAAACTGCGGCTGGC 59.744 61.111 11.64 0.00 43.96 4.85
893 1076 2.113986 AGGCAAGAAACTGCGGCT 59.886 55.556 0.00 0.00 43.60 5.52
907 1090 2.343475 TATTGCTAGCAGGGGCAGGC 62.343 60.000 18.45 0.00 44.61 4.85
908 1091 0.250640 CTATTGCTAGCAGGGGCAGG 60.251 60.000 18.45 1.96 44.61 4.85
909 1092 0.761187 TCTATTGCTAGCAGGGGCAG 59.239 55.000 18.45 11.34 44.61 4.85
910 1093 1.438469 ATCTATTGCTAGCAGGGGCA 58.562 50.000 18.45 2.54 44.61 5.36
912 1095 5.012561 ACTCTTTATCTATTGCTAGCAGGGG 59.987 44.000 18.45 11.46 0.00 4.79
913 1096 5.931146 CACTCTTTATCTATTGCTAGCAGGG 59.069 44.000 18.45 11.81 0.00 4.45
914 1097 5.931146 CCACTCTTTATCTATTGCTAGCAGG 59.069 44.000 18.45 12.16 0.00 4.85
915 1098 6.520272 ACCACTCTTTATCTATTGCTAGCAG 58.480 40.000 18.45 6.82 0.00 4.24
916 1099 6.485830 ACCACTCTTTATCTATTGCTAGCA 57.514 37.500 14.93 14.93 0.00 3.49
917 1100 7.306866 CGAAACCACTCTTTATCTATTGCTAGC 60.307 40.741 8.10 8.10 0.00 3.42
918 1101 7.306866 GCGAAACCACTCTTTATCTATTGCTAG 60.307 40.741 0.00 0.00 0.00 3.42
919 1102 6.479001 GCGAAACCACTCTTTATCTATTGCTA 59.521 38.462 0.00 0.00 0.00 3.49
921 1104 5.502606 GCGAAACCACTCTTTATCTATTGC 58.497 41.667 0.00 0.00 0.00 3.56
922 1105 5.817816 AGGCGAAACCACTCTTTATCTATTG 59.182 40.000 0.00 0.00 43.14 1.90
923 1106 5.990668 AGGCGAAACCACTCTTTATCTATT 58.009 37.500 0.00 0.00 43.14 1.73
926 1109 3.676324 CGAGGCGAAACCACTCTTTATCT 60.676 47.826 0.00 0.00 43.14 1.98
927 1110 2.603560 CGAGGCGAAACCACTCTTTATC 59.396 50.000 0.00 0.00 43.14 1.75
931 1114 1.668151 GCGAGGCGAAACCACTCTT 60.668 57.895 0.00 0.00 43.14 2.85
933 1116 1.959226 TTGCGAGGCGAAACCACTC 60.959 57.895 0.00 0.00 43.14 3.51
952 1135 2.030457 CCAACTAAAGCTTATGACGCCG 59.970 50.000 0.00 0.00 0.00 6.46
956 1139 5.220605 CGGCTAACCAACTAAAGCTTATGAC 60.221 44.000 0.00 0.00 35.30 3.06
959 1142 5.093849 TCGGCTAACCAACTAAAGCTTAT 57.906 39.130 0.00 0.00 35.30 1.73
961 1158 3.335579 CTCGGCTAACCAACTAAAGCTT 58.664 45.455 0.00 0.00 35.30 3.74
967 1164 2.028748 GTGTTCCTCGGCTAACCAACTA 60.029 50.000 0.00 0.00 34.57 2.24
975 1172 4.789075 GCGCGTGTTCCTCGGCTA 62.789 66.667 8.43 0.00 0.00 3.93
1005 1207 2.912025 AACACCTTGGCCTTGCGG 60.912 61.111 3.32 1.07 0.00 5.69
1007 1209 2.644992 CGAACACCTTGGCCTTGC 59.355 61.111 3.32 0.00 0.00 4.01
1008 1210 2.644992 GCGAACACCTTGGCCTTG 59.355 61.111 3.32 0.00 0.00 3.61
1009 1211 2.978010 CGCGAACACCTTGGCCTT 60.978 61.111 0.00 0.00 0.00 4.35
1012 1214 3.423154 CTCCGCGAACACCTTGGC 61.423 66.667 8.23 0.00 0.00 4.52
1193 1401 1.557443 GACGAGCAACAGGTTGACCG 61.557 60.000 15.88 17.28 42.93 4.79
1308 1516 3.329929 AACTAAGCTTGGTTACCTCGG 57.670 47.619 24.84 0.00 29.61 4.63
1345 1566 3.688185 CAGAGACTTGTAAGCATGCATGT 59.312 43.478 26.79 11.59 33.32 3.21
1396 1617 8.611051 ATGGTCTAAGATTAGAACTACCAGTT 57.389 34.615 16.46 0.00 45.54 3.16
1407 1628 9.482627 GTGGACAAATCTATGGTCTAAGATTAG 57.517 37.037 0.00 0.00 40.66 1.73
1465 1702 2.470156 CTGCAATTACAGCTGCCGA 58.530 52.632 15.27 0.00 37.79 5.54
1479 1716 0.387494 CATGTTTGCACGATGCTGCA 60.387 50.000 4.13 4.13 45.31 4.41
1493 1730 2.371841 TGAGTAAGCAGTGACCCATGTT 59.628 45.455 0.00 0.00 0.00 2.71
1497 1741 2.047061 AGTTGAGTAAGCAGTGACCCA 58.953 47.619 0.00 0.00 0.00 4.51
1529 1773 7.922505 GCAAAATCAATGCATAATAACGGTA 57.077 32.000 0.00 0.00 43.29 4.02
1530 1774 6.826893 GCAAAATCAATGCATAATAACGGT 57.173 33.333 0.00 0.00 43.29 4.83
1541 1785 0.984109 CCGACGTGCAAAATCAATGC 59.016 50.000 0.00 0.00 44.08 3.56
1542 1786 0.984109 GCCGACGTGCAAAATCAATG 59.016 50.000 0.00 0.00 0.00 2.82
1543 1787 0.109319 GGCCGACGTGCAAAATCAAT 60.109 50.000 0.00 0.00 0.00 2.57
1544 1788 1.284408 GGCCGACGTGCAAAATCAA 59.716 52.632 0.00 0.00 0.00 2.57
1545 1789 2.950673 GGCCGACGTGCAAAATCA 59.049 55.556 0.00 0.00 0.00 2.57
1546 1790 2.202298 CGGCCGACGTGCAAAATC 60.202 61.111 24.07 0.00 37.93 2.17
1555 1799 2.222953 GTGAACATTCACGGCCGACG 62.223 60.000 35.90 22.57 46.80 5.12
1556 1800 1.495951 GTGAACATTCACGGCCGAC 59.504 57.895 35.90 12.66 46.80 4.79
1557 1801 3.960237 GTGAACATTCACGGCCGA 58.040 55.556 35.90 10.61 46.80 5.54
1585 1829 5.574188 AGCAGGAGGTCAGTTAATTTCATT 58.426 37.500 0.00 0.00 0.00 2.57
1586 1830 5.184892 AGCAGGAGGTCAGTTAATTTCAT 57.815 39.130 0.00 0.00 0.00 2.57
1587 1831 4.640771 AGCAGGAGGTCAGTTAATTTCA 57.359 40.909 0.00 0.00 0.00 2.69
1588 1832 4.572795 GCTAGCAGGAGGTCAGTTAATTTC 59.427 45.833 10.63 0.00 0.00 2.17
1589 1833 4.226168 AGCTAGCAGGAGGTCAGTTAATTT 59.774 41.667 18.83 0.00 0.00 1.82
1590 1834 3.777522 AGCTAGCAGGAGGTCAGTTAATT 59.222 43.478 18.83 0.00 0.00 1.40
1591 1835 3.133721 CAGCTAGCAGGAGGTCAGTTAAT 59.866 47.826 18.83 0.00 0.00 1.40
1592 1836 2.497675 CAGCTAGCAGGAGGTCAGTTAA 59.502 50.000 18.83 0.00 0.00 2.01
1593 1837 2.103373 CAGCTAGCAGGAGGTCAGTTA 58.897 52.381 18.83 0.00 0.00 2.24
1627 1871 2.620585 GGGTTTGGAGATGCTCTTATGC 59.379 50.000 0.00 0.00 0.00 3.14
1705 1977 1.299541 AGTGTTGACTTGTCTTGGCG 58.700 50.000 2.35 0.00 0.00 5.69
1795 2116 1.800032 CGTACGGTAACCAGGCGTA 59.200 57.895 7.57 0.00 0.00 4.42
1859 2180 1.419374 GCATGTCTTGTCGTCGACTT 58.581 50.000 24.75 2.03 33.15 3.01
1953 2274 1.654954 GGAGCTCTTCGTGCCGTCTA 61.655 60.000 14.64 0.00 0.00 2.59
1954 2275 2.569134 GAGCTCTTCGTGCCGTCT 59.431 61.111 6.43 0.00 0.00 4.18
2315 2657 3.003173 CCGGCTCCTTGGAGTCCA 61.003 66.667 8.12 8.12 0.00 4.02
2445 2804 0.613572 TGTAGGTGTCCATCCTCGCA 60.614 55.000 0.00 0.00 36.60 5.10
3259 3646 3.863142 AACCGTGTAACTACTGCCTAG 57.137 47.619 0.00 0.00 31.75 3.02
3260 3647 3.573538 TGAAACCGTGTAACTACTGCCTA 59.426 43.478 0.00 0.00 31.75 3.93
3261 3648 2.366266 TGAAACCGTGTAACTACTGCCT 59.634 45.455 0.00 0.00 31.75 4.75
3266 3653 2.991866 GGCTCTGAAACCGTGTAACTAC 59.008 50.000 0.00 0.00 31.75 2.73
3313 3704 9.716507 CAAAACCCATCTTAAATTCTACGTATG 57.283 33.333 0.00 0.00 0.00 2.39
3314 3705 9.457436 ACAAAACCCATCTTAAATTCTACGTAT 57.543 29.630 0.00 0.00 0.00 3.06
3317 3708 8.911662 CAAACAAAACCCATCTTAAATTCTACG 58.088 33.333 0.00 0.00 0.00 3.51
3327 3718 5.891551 AGAGTACACAAACAAAACCCATCTT 59.108 36.000 0.00 0.00 0.00 2.40
3345 3739 1.272769 AGACACCCGCAAGAAGAGTAC 59.727 52.381 0.00 0.00 43.02 2.73
3364 3758 9.565213 GATTTGAGAAGTGATTTTAACCATGAG 57.435 33.333 0.00 0.00 0.00 2.90
3381 3775 4.401022 ACTTGCATGTCTGGATTTGAGAA 58.599 39.130 0.00 0.00 0.00 2.87
3386 3780 6.182627 TCTGAATACTTGCATGTCTGGATTT 58.817 36.000 8.74 0.00 0.00 2.17
3427 3821 7.103641 GTGACATAGACAGACCCTTTTTCATA 58.896 38.462 0.00 0.00 0.00 2.15
3428 3822 5.940470 GTGACATAGACAGACCCTTTTTCAT 59.060 40.000 0.00 0.00 0.00 2.57
3429 3823 5.163248 TGTGACATAGACAGACCCTTTTTCA 60.163 40.000 0.00 0.00 0.00 2.69
3430 3824 5.305585 TGTGACATAGACAGACCCTTTTTC 58.694 41.667 0.00 0.00 0.00 2.29
3431 3825 5.304686 TGTGACATAGACAGACCCTTTTT 57.695 39.130 0.00 0.00 0.00 1.94
3432 3826 4.974645 TGTGACATAGACAGACCCTTTT 57.025 40.909 0.00 0.00 0.00 2.27
3433 3827 4.780021 AGATGTGACATAGACAGACCCTTT 59.220 41.667 0.00 0.00 0.00 3.11
3434 3828 4.357325 AGATGTGACATAGACAGACCCTT 58.643 43.478 0.00 0.00 0.00 3.95
3435 3829 3.987745 AGATGTGACATAGACAGACCCT 58.012 45.455 0.00 0.00 0.00 4.34
3436 3830 5.133941 TCTAGATGTGACATAGACAGACCC 58.866 45.833 0.00 0.00 0.00 4.46
3437 3831 6.676950 CATCTAGATGTGACATAGACAGACC 58.323 44.000 22.42 0.00 34.23 3.85
3468 3862 9.178758 GGGTGAAAAAGTTAGATGTGAGATAAT 57.821 33.333 0.00 0.00 0.00 1.28
3469 3863 8.383175 AGGGTGAAAAAGTTAGATGTGAGATAA 58.617 33.333 0.00 0.00 0.00 1.75
3470 3864 7.918076 AGGGTGAAAAAGTTAGATGTGAGATA 58.082 34.615 0.00 0.00 0.00 1.98
3473 3867 6.486657 TCAAGGGTGAAAAAGTTAGATGTGAG 59.513 38.462 0.00 0.00 0.00 3.51
3475 3869 6.633500 TCAAGGGTGAAAAAGTTAGATGTG 57.367 37.500 0.00 0.00 0.00 3.21
3476 3870 7.839680 AATCAAGGGTGAAAAAGTTAGATGT 57.160 32.000 0.00 0.00 37.30 3.06
3503 3897 8.477256 ACAAATCCATGAGAGACTTTTCAAAAA 58.523 29.630 0.00 0.00 0.00 1.94
3504 3898 8.010733 ACAAATCCATGAGAGACTTTTCAAAA 57.989 30.769 0.00 0.00 0.00 2.44
3505 3899 7.587037 ACAAATCCATGAGAGACTTTTCAAA 57.413 32.000 0.00 0.00 0.00 2.69
3506 3900 7.587037 AACAAATCCATGAGAGACTTTTCAA 57.413 32.000 0.00 0.00 0.00 2.69
3507 3901 7.587037 AAACAAATCCATGAGAGACTTTTCA 57.413 32.000 0.00 0.00 0.00 2.69
3508 3902 8.355913 AGAAAACAAATCCATGAGAGACTTTTC 58.644 33.333 0.00 1.39 0.00 2.29
3509 3903 8.242729 AGAAAACAAATCCATGAGAGACTTTT 57.757 30.769 0.00 0.00 0.00 2.27
3510 3904 7.830099 AGAAAACAAATCCATGAGAGACTTT 57.170 32.000 0.00 0.00 0.00 2.66
3511 3905 7.040132 GGAAGAAAACAAATCCATGAGAGACTT 60.040 37.037 0.00 0.00 32.08 3.01
3512 3906 6.432472 GGAAGAAAACAAATCCATGAGAGACT 59.568 38.462 0.00 0.00 32.08 3.24
3513 3907 6.432472 AGGAAGAAAACAAATCCATGAGAGAC 59.568 38.462 0.00 0.00 34.30 3.36
3514 3908 6.546484 AGGAAGAAAACAAATCCATGAGAGA 58.454 36.000 0.00 0.00 34.30 3.10
3515 3909 6.830873 AGGAAGAAAACAAATCCATGAGAG 57.169 37.500 0.00 0.00 34.30 3.20
3516 3910 6.886459 CCTAGGAAGAAAACAAATCCATGAGA 59.114 38.462 1.05 0.00 34.30 3.27
3517 3911 6.886459 TCCTAGGAAGAAAACAAATCCATGAG 59.114 38.462 9.71 0.00 34.30 2.90
3518 3912 6.789268 TCCTAGGAAGAAAACAAATCCATGA 58.211 36.000 9.71 0.00 34.30 3.07
3519 3913 7.340232 TCATCCTAGGAAGAAAACAAATCCATG 59.660 37.037 17.30 3.50 34.30 3.66
3520 3914 7.413446 TCATCCTAGGAAGAAAACAAATCCAT 58.587 34.615 17.30 0.00 34.30 3.41
3521 3915 6.789268 TCATCCTAGGAAGAAAACAAATCCA 58.211 36.000 17.30 0.00 34.30 3.41
3522 3916 6.319911 CCTCATCCTAGGAAGAAAACAAATCC 59.680 42.308 17.30 0.00 39.15 3.01
3523 3917 6.319911 CCCTCATCCTAGGAAGAAAACAAATC 59.680 42.308 17.30 0.00 39.15 2.17
3524 3918 6.190587 CCCTCATCCTAGGAAGAAAACAAAT 58.809 40.000 17.30 0.00 39.15 2.32
3525 3919 5.570320 CCCTCATCCTAGGAAGAAAACAAA 58.430 41.667 17.30 0.00 39.15 2.83
3526 3920 4.567747 GCCCTCATCCTAGGAAGAAAACAA 60.568 45.833 17.30 0.00 39.15 2.83
3527 3921 3.054361 GCCCTCATCCTAGGAAGAAAACA 60.054 47.826 17.30 0.00 39.15 2.83
3528 3922 3.546724 GCCCTCATCCTAGGAAGAAAAC 58.453 50.000 17.30 4.90 39.15 2.43
3529 3923 2.170607 CGCCCTCATCCTAGGAAGAAAA 59.829 50.000 17.30 0.00 39.15 2.29
3530 3924 1.762957 CGCCCTCATCCTAGGAAGAAA 59.237 52.381 17.30 0.51 39.15 2.52
3531 3925 1.343075 ACGCCCTCATCCTAGGAAGAA 60.343 52.381 17.30 3.18 39.15 2.52
3532 3926 0.261991 ACGCCCTCATCCTAGGAAGA 59.738 55.000 17.30 16.38 39.15 2.87
3533 3927 1.123928 AACGCCCTCATCCTAGGAAG 58.876 55.000 17.30 12.24 39.15 3.46
3534 3928 2.091499 TCTAACGCCCTCATCCTAGGAA 60.091 50.000 17.30 0.00 39.15 3.36
3535 3929 1.497716 TCTAACGCCCTCATCCTAGGA 59.502 52.381 15.46 15.46 39.15 2.94
3536 3930 1.996798 TCTAACGCCCTCATCCTAGG 58.003 55.000 0.82 0.82 36.30 3.02
3537 3931 2.894126 ACATCTAACGCCCTCATCCTAG 59.106 50.000 0.00 0.00 0.00 3.02
3538 3932 2.628178 CACATCTAACGCCCTCATCCTA 59.372 50.000 0.00 0.00 0.00 2.94
3539 3933 1.414181 CACATCTAACGCCCTCATCCT 59.586 52.381 0.00 0.00 0.00 3.24
3540 3934 1.412710 TCACATCTAACGCCCTCATCC 59.587 52.381 0.00 0.00 0.00 3.51
3541 3935 2.362397 TCTCACATCTAACGCCCTCATC 59.638 50.000 0.00 0.00 0.00 2.92
3542 3936 2.388735 TCTCACATCTAACGCCCTCAT 58.611 47.619 0.00 0.00 0.00 2.90
3543 3937 1.847328 TCTCACATCTAACGCCCTCA 58.153 50.000 0.00 0.00 0.00 3.86
3544 3938 4.585955 TTATCTCACATCTAACGCCCTC 57.414 45.455 0.00 0.00 0.00 4.30
3545 3939 6.665680 AGATATTATCTCACATCTAACGCCCT 59.334 38.462 0.08 0.00 33.42 5.19
3546 3940 6.868622 AGATATTATCTCACATCTAACGCCC 58.131 40.000 0.08 0.00 33.42 6.13
3573 3967 9.053840 ACAGATTTGCTATTTCACATCTAGATG 57.946 33.333 27.63 27.63 44.15 2.90
3578 3972 8.969260 TCATACAGATTTGCTATTTCACATCT 57.031 30.769 0.00 0.00 34.76 2.90
3635 4029 6.049955 ACTTTGTAGCCATCTTAACTGCTA 57.950 37.500 0.00 0.00 35.34 3.49
3640 4034 8.549338 AAGACTAACTTTGTAGCCATCTTAAC 57.451 34.615 0.00 0.00 34.94 2.01
3649 4043 8.062448 CACAGTGTTAAAGACTAACTTTGTAGC 58.938 37.037 0.00 0.00 46.62 3.58
3655 4049 9.310716 GTAGAACACAGTGTTAAAGACTAACTT 57.689 33.333 19.17 0.00 41.28 2.66
3660 4054 7.012704 TCGTAGTAGAACACAGTGTTAAAGACT 59.987 37.037 19.17 18.85 41.28 3.24
3661 4055 7.134815 TCGTAGTAGAACACAGTGTTAAAGAC 58.865 38.462 19.17 13.49 41.28 3.01
3662 4056 7.263100 TCGTAGTAGAACACAGTGTTAAAGA 57.737 36.000 19.17 8.97 41.28 2.52
3665 4059 9.398170 GTAATTCGTAGTAGAACACAGTGTTAA 57.602 33.333 19.17 7.82 41.28 2.01
3666 4060 8.567104 TGTAATTCGTAGTAGAACACAGTGTTA 58.433 33.333 19.17 1.57 41.28 2.41
3667 4061 7.428020 TGTAATTCGTAGTAGAACACAGTGTT 58.572 34.615 19.23 19.23 44.37 3.32
3668 4062 6.973843 TGTAATTCGTAGTAGAACACAGTGT 58.026 36.000 0.00 0.00 32.39 3.55
3670 4064 7.033791 CCATGTAATTCGTAGTAGAACACAGT 58.966 38.462 0.00 0.00 34.23 3.55
3671 4065 6.475727 CCCATGTAATTCGTAGTAGAACACAG 59.524 42.308 0.00 0.00 34.23 3.66
3673 4067 5.751990 CCCCATGTAATTCGTAGTAGAACAC 59.248 44.000 0.00 0.00 32.39 3.32
3674 4068 5.422970 ACCCCATGTAATTCGTAGTAGAACA 59.577 40.000 0.00 0.00 32.39 3.18
3675 4069 5.910614 ACCCCATGTAATTCGTAGTAGAAC 58.089 41.667 0.00 0.00 32.39 3.01
3677 4071 6.835488 AGTAACCCCATGTAATTCGTAGTAGA 59.165 38.462 0.00 0.00 0.00 2.59
3678 4072 6.921857 CAGTAACCCCATGTAATTCGTAGTAG 59.078 42.308 0.00 0.00 0.00 2.57
3679 4073 6.183360 CCAGTAACCCCATGTAATTCGTAGTA 60.183 42.308 0.00 0.00 0.00 1.82
3680 4074 5.395990 CCAGTAACCCCATGTAATTCGTAGT 60.396 44.000 0.00 0.00 0.00 2.73
3681 4075 5.054477 CCAGTAACCCCATGTAATTCGTAG 58.946 45.833 0.00 0.00 0.00 3.51
3689 4298 0.254747 GCTGCCAGTAACCCCATGTA 59.745 55.000 0.00 0.00 0.00 2.29
3699 4308 1.447140 CGCTTAACGGCTGCCAGTA 60.447 57.895 20.29 6.86 38.44 2.74
3771 4382 2.073816 GAAACACACCACATACCTCGG 58.926 52.381 0.00 0.00 0.00 4.63
3773 4384 4.002906 TCTGAAACACACCACATACCTC 57.997 45.455 0.00 0.00 0.00 3.85
3775 4386 3.058224 GCTTCTGAAACACACCACATACC 60.058 47.826 0.00 0.00 0.00 2.73
3778 4389 2.936202 AGCTTCTGAAACACACCACAT 58.064 42.857 0.00 0.00 0.00 3.21
3779 4390 2.418368 AGCTTCTGAAACACACCACA 57.582 45.000 0.00 0.00 0.00 4.17
3780 4391 2.945668 AGAAGCTTCTGAAACACACCAC 59.054 45.455 27.96 0.00 35.89 4.16
3781 4392 3.281727 AGAAGCTTCTGAAACACACCA 57.718 42.857 27.96 0.00 35.89 4.17
3782 4393 5.693814 CATTAGAAGCTTCTGAAACACACC 58.306 41.667 34.26 2.23 38.19 4.16
3802 4413 0.250467 ACTCACGAAGCCACTGCATT 60.250 50.000 0.00 0.00 41.13 3.56
3804 4415 1.595109 CACTCACGAAGCCACTGCA 60.595 57.895 0.00 0.00 41.13 4.41
3837 4448 2.264794 CCCACGCACTACACCTCC 59.735 66.667 0.00 0.00 0.00 4.30
3856 4467 1.228154 GAGACCACCCAACACCACC 60.228 63.158 0.00 0.00 0.00 4.61
3857 4468 0.182775 AAGAGACCACCCAACACCAC 59.817 55.000 0.00 0.00 0.00 4.16
3906 4517 1.665735 CGCCTCCAAAATGGTGAAACG 60.666 52.381 0.21 0.00 39.03 3.60
3927 4538 3.770040 TGATGGACTCCACGGCGG 61.770 66.667 13.24 0.00 35.80 6.13
3932 4543 1.160137 GTGCAAGTGATGGACTCCAC 58.840 55.000 0.00 0.00 46.03 4.02
3968 4579 1.967779 GCCTTAGGCTTTCACCCAAAA 59.032 47.619 17.16 0.00 46.69 2.44
3987 4598 2.136196 CTCTCTCGGCCCGACATAGC 62.136 65.000 0.00 0.00 0.00 2.97
3988 4599 1.519751 CCTCTCTCGGCCCGACATAG 61.520 65.000 0.00 0.00 0.00 2.23
3989 4600 1.528542 CCTCTCTCGGCCCGACATA 60.529 63.158 0.00 0.00 0.00 2.29
3990 4601 2.835431 CCTCTCTCGGCCCGACAT 60.835 66.667 0.00 0.00 0.00 3.06
4010 4621 3.824510 GAAAGCGACGACGGCGAC 61.825 66.667 30.26 18.33 41.64 5.19
4013 4624 3.179939 GAGGAAAGCGACGACGGC 61.180 66.667 9.67 0.00 40.15 5.68
4014 4625 0.666577 AAAGAGGAAAGCGACGACGG 60.667 55.000 9.67 0.00 40.15 4.79
4015 4626 0.435008 CAAAGAGGAAAGCGACGACG 59.565 55.000 2.12 2.12 42.93 5.12
4016 4627 0.790814 CCAAAGAGGAAAGCGACGAC 59.209 55.000 0.00 0.00 41.22 4.34
4017 4628 0.320421 CCCAAAGAGGAAAGCGACGA 60.320 55.000 0.00 0.00 41.22 4.20
4018 4629 0.602905 ACCCAAAGAGGAAAGCGACG 60.603 55.000 0.00 0.00 41.22 5.12
4019 4630 0.875059 CACCCAAAGAGGAAAGCGAC 59.125 55.000 0.00 0.00 41.22 5.19
4020 4631 0.472471 ACACCCAAAGAGGAAAGCGA 59.528 50.000 0.00 0.00 41.22 4.93
4021 4632 0.875059 GACACCCAAAGAGGAAAGCG 59.125 55.000 0.00 0.00 41.22 4.68
4022 4633 0.875059 CGACACCCAAAGAGGAAAGC 59.125 55.000 0.00 0.00 41.22 3.51
4023 4634 0.875059 GCGACACCCAAAGAGGAAAG 59.125 55.000 0.00 0.00 41.22 2.62
4024 4635 0.536460 GGCGACACCCAAAGAGGAAA 60.536 55.000 0.00 0.00 41.22 3.13
4025 4636 1.072505 GGCGACACCCAAAGAGGAA 59.927 57.895 0.00 0.00 41.22 3.36
4026 4637 1.415672 AAGGCGACACCCAAAGAGGA 61.416 55.000 0.00 0.00 41.22 3.71
4027 4638 1.073199 AAGGCGACACCCAAAGAGG 59.927 57.895 0.00 0.00 40.58 3.69
4028 4639 0.250295 TCAAGGCGACACCCAAAGAG 60.250 55.000 0.00 0.00 40.58 2.85
4029 4640 0.181587 TTCAAGGCGACACCCAAAGA 59.818 50.000 0.00 0.00 40.58 2.52
4030 4641 0.593128 CTTCAAGGCGACACCCAAAG 59.407 55.000 0.00 0.00 40.58 2.77
4031 4642 0.181587 TCTTCAAGGCGACACCCAAA 59.818 50.000 0.00 0.00 40.58 3.28
4032 4643 0.534203 GTCTTCAAGGCGACACCCAA 60.534 55.000 0.00 0.00 40.58 4.12
4033 4644 1.070786 GTCTTCAAGGCGACACCCA 59.929 57.895 0.00 0.00 40.58 4.51
4034 4645 1.671379 GGTCTTCAAGGCGACACCC 60.671 63.158 0.00 0.00 40.58 4.61
4035 4646 1.671379 GGGTCTTCAAGGCGACACC 60.671 63.158 0.00 0.00 39.61 4.16
4036 4647 0.321653 ATGGGTCTTCAAGGCGACAC 60.322 55.000 0.00 0.00 34.20 3.67
4037 4648 0.321564 CATGGGTCTTCAAGGCGACA 60.322 55.000 0.00 0.00 31.88 4.35
4038 4649 1.026718 CCATGGGTCTTCAAGGCGAC 61.027 60.000 2.85 0.00 0.00 5.19
4039 4650 1.198094 TCCATGGGTCTTCAAGGCGA 61.198 55.000 13.02 0.00 0.00 5.54
4040 4651 0.107017 ATCCATGGGTCTTCAAGGCG 60.107 55.000 13.02 0.00 0.00 5.52
4041 4652 1.685148 GATCCATGGGTCTTCAAGGC 58.315 55.000 18.37 0.00 0.00 4.35
4042 4653 1.133668 GGGATCCATGGGTCTTCAAGG 60.134 57.143 24.26 0.00 0.00 3.61
4043 4654 1.475751 CGGGATCCATGGGTCTTCAAG 60.476 57.143 24.26 7.94 0.00 3.02
4044 4655 0.546122 CGGGATCCATGGGTCTTCAA 59.454 55.000 24.26 0.00 0.00 2.69
4045 4656 0.620410 ACGGGATCCATGGGTCTTCA 60.620 55.000 24.26 0.00 0.00 3.02
4046 4657 0.546598 AACGGGATCCATGGGTCTTC 59.453 55.000 24.26 15.34 0.00 2.87
4047 4658 0.999712 AAACGGGATCCATGGGTCTT 59.000 50.000 24.26 8.53 0.00 3.01
4048 4659 0.255890 CAAACGGGATCCATGGGTCT 59.744 55.000 24.26 1.79 0.00 3.85
4049 4660 1.384222 GCAAACGGGATCCATGGGTC 61.384 60.000 17.40 17.40 0.00 4.46
4050 4661 1.379843 GCAAACGGGATCCATGGGT 60.380 57.895 15.23 3.70 0.00 4.51
4051 4662 2.480610 CGCAAACGGGATCCATGGG 61.481 63.158 15.23 10.87 34.97 4.00
4052 4663 3.110139 CGCAAACGGGATCCATGG 58.890 61.111 15.23 4.97 34.97 3.66
4053 4664 2.051804 GAGCGCAAACGGGATCCATG 62.052 60.000 15.23 7.95 40.57 3.66
4054 4665 1.819632 GAGCGCAAACGGGATCCAT 60.820 57.895 15.23 0.00 40.57 3.41
4055 4666 2.435938 GAGCGCAAACGGGATCCA 60.436 61.111 15.23 0.00 40.57 3.41
4056 4667 2.125106 AGAGCGCAAACGGGATCC 60.125 61.111 11.47 1.92 40.57 3.36
4057 4668 2.174319 GGAGAGCGCAAACGGGATC 61.174 63.158 11.47 0.00 40.57 3.36
4058 4669 2.125106 GGAGAGCGCAAACGGGAT 60.125 61.111 11.47 0.00 40.57 3.85
4059 4670 2.954684 ATGGAGAGCGCAAACGGGA 61.955 57.895 11.47 0.00 40.57 5.14
4060 4671 2.436646 ATGGAGAGCGCAAACGGG 60.437 61.111 11.47 0.00 40.57 5.28
4061 4672 2.034879 ACATGGAGAGCGCAAACGG 61.035 57.895 11.47 0.00 40.57 4.44
4062 4673 1.133253 CACATGGAGAGCGCAAACG 59.867 57.895 11.47 0.00 44.07 3.60
4063 4674 1.154150 GCACATGGAGAGCGCAAAC 60.154 57.895 11.47 0.00 0.00 2.93
4064 4675 0.036483 TAGCACATGGAGAGCGCAAA 60.036 50.000 11.47 0.00 38.98 3.68
4065 4676 0.460811 CTAGCACATGGAGAGCGCAA 60.461 55.000 11.47 0.00 38.98 4.85
4066 4677 1.142531 CTAGCACATGGAGAGCGCA 59.857 57.895 11.47 0.00 38.98 6.09
4067 4678 0.033228 ATCTAGCACATGGAGAGCGC 59.967 55.000 0.00 0.00 38.98 5.92
4068 4679 1.780806 CATCTAGCACATGGAGAGCG 58.219 55.000 0.00 0.00 38.98 5.03
4069 4680 1.510776 GCATCTAGCACATGGAGAGC 58.489 55.000 0.00 0.00 44.79 4.09
4070 4681 3.799574 GTGAGCATCTAGCACATGGAGAG 60.800 52.174 0.00 0.00 45.47 3.20
4071 4682 2.102084 GTGAGCATCTAGCACATGGAGA 59.898 50.000 0.00 0.00 45.47 3.71
4072 4683 2.481854 GTGAGCATCTAGCACATGGAG 58.518 52.381 0.00 0.00 45.47 3.86
4073 4684 1.202452 CGTGAGCATCTAGCACATGGA 60.202 52.381 0.00 0.00 45.47 3.41
4074 4685 1.202452 TCGTGAGCATCTAGCACATGG 60.202 52.381 0.00 0.00 46.68 3.66
4076 4687 1.753649 AGTCGTGAGCATCTAGCACAT 59.246 47.619 0.00 0.00 45.47 3.21
4080 4691 1.325943 GCAAAGTCGTGAGCATCTAGC 59.674 52.381 0.00 0.00 46.19 3.42
4081 4692 2.602211 CAGCAAAGTCGTGAGCATCTAG 59.398 50.000 0.00 0.00 34.92 2.43
4082 4693 2.029020 ACAGCAAAGTCGTGAGCATCTA 60.029 45.455 0.00 0.00 34.92 1.98
4083 4694 1.270518 ACAGCAAAGTCGTGAGCATCT 60.271 47.619 0.00 0.00 34.92 2.90
4084 4695 1.127582 GACAGCAAAGTCGTGAGCATC 59.872 52.381 0.00 0.00 0.00 3.91
4085 4696 1.151668 GACAGCAAAGTCGTGAGCAT 58.848 50.000 0.00 0.00 0.00 3.79
4086 4697 2.605094 GACAGCAAAGTCGTGAGCA 58.395 52.632 0.00 0.00 0.00 4.26
4100 4711 4.056125 TCGAGCACCTGCCGACAG 62.056 66.667 6.73 0.00 43.38 3.51
4119 4730 2.327343 CCACACCATGACACCGCAG 61.327 63.158 0.00 0.00 0.00 5.18
4120 4731 2.281414 CCACACCATGACACCGCA 60.281 61.111 0.00 0.00 0.00 5.69
4121 4732 3.737172 GCCACACCATGACACCGC 61.737 66.667 0.00 0.00 0.00 5.68
4122 4733 3.422303 CGCCACACCATGACACCG 61.422 66.667 0.00 0.00 0.00 4.94
4123 4734 2.281484 ACGCCACACCATGACACC 60.281 61.111 0.00 0.00 0.00 4.16
4124 4735 2.667318 CGACGCCACACCATGACAC 61.667 63.158 0.00 0.00 0.00 3.67
4125 4736 2.356913 CGACGCCACACCATGACA 60.357 61.111 0.00 0.00 0.00 3.58
4126 4737 2.048597 TCGACGCCACACCATGAC 60.049 61.111 0.00 0.00 0.00 3.06
4127 4738 2.094757 AACTCGACGCCACACCATGA 62.095 55.000 0.00 0.00 0.00 3.07
4128 4739 1.227999 AAACTCGACGCCACACCATG 61.228 55.000 0.00 0.00 0.00 3.66
4129 4740 1.070786 AAACTCGACGCCACACCAT 59.929 52.632 0.00 0.00 0.00 3.55
4130 4741 1.885388 CAAACTCGACGCCACACCA 60.885 57.895 0.00 0.00 0.00 4.17
4131 4742 2.604174 CCAAACTCGACGCCACACC 61.604 63.158 0.00 0.00 0.00 4.16
4132 4743 2.935955 CCAAACTCGACGCCACAC 59.064 61.111 0.00 0.00 0.00 3.82
4133 4744 2.970324 GCCAAACTCGACGCCACA 60.970 61.111 0.00 0.00 0.00 4.17
4134 4745 2.539338 TTGCCAAACTCGACGCCAC 61.539 57.895 0.00 0.00 0.00 5.01
4135 4746 2.203084 TTGCCAAACTCGACGCCA 60.203 55.556 0.00 0.00 0.00 5.69
4136 4747 2.251371 GTTGCCAAACTCGACGCC 59.749 61.111 0.00 0.00 33.22 5.68
4137 4748 1.897398 ATCGTTGCCAAACTCGACGC 61.897 55.000 0.00 0.00 40.22 5.19
4138 4749 0.179250 CATCGTTGCCAAACTCGACG 60.179 55.000 0.00 0.00 41.38 5.12
4139 4750 1.144969 TCATCGTTGCCAAACTCGAC 58.855 50.000 0.00 0.00 35.24 4.20
4140 4751 1.731709 CATCATCGTTGCCAAACTCGA 59.268 47.619 0.00 0.00 33.87 4.04
4141 4752 1.731709 TCATCATCGTTGCCAAACTCG 59.268 47.619 0.00 0.00 33.87 4.18
4142 4753 3.488047 CCATCATCATCGTTGCCAAACTC 60.488 47.826 0.00 0.00 33.87 3.01
4143 4754 2.424601 CCATCATCATCGTTGCCAAACT 59.575 45.455 0.00 0.00 33.87 2.66
4144 4755 2.801063 CCATCATCATCGTTGCCAAAC 58.199 47.619 0.00 0.00 0.00 2.93
4145 4756 1.134753 GCCATCATCATCGTTGCCAAA 59.865 47.619 0.00 0.00 0.00 3.28
4146 4757 0.740149 GCCATCATCATCGTTGCCAA 59.260 50.000 0.00 0.00 0.00 4.52
4147 4758 1.102809 GGCCATCATCATCGTTGCCA 61.103 55.000 0.00 0.00 37.36 4.92
4148 4759 1.102809 TGGCCATCATCATCGTTGCC 61.103 55.000 0.00 0.00 37.90 4.52
4149 4760 0.309922 CTGGCCATCATCATCGTTGC 59.690 55.000 5.51 0.00 0.00 4.17
4150 4761 1.957668 TCTGGCCATCATCATCGTTG 58.042 50.000 5.51 0.00 0.00 4.10
4151 4762 2.501261 CATCTGGCCATCATCATCGTT 58.499 47.619 5.51 0.00 0.00 3.85
4152 4763 1.271217 CCATCTGGCCATCATCATCGT 60.271 52.381 5.51 0.00 0.00 3.73
4153 4764 1.271217 ACCATCTGGCCATCATCATCG 60.271 52.381 5.51 0.00 39.32 3.84
4154 4765 2.581216 ACCATCTGGCCATCATCATC 57.419 50.000 5.51 0.00 39.32 2.92
4155 4766 2.307980 CCTACCATCTGGCCATCATCAT 59.692 50.000 5.51 0.00 39.32 2.45
4156 4767 1.701292 CCTACCATCTGGCCATCATCA 59.299 52.381 5.51 0.00 39.32 3.07
4157 4768 1.004044 CCCTACCATCTGGCCATCATC 59.996 57.143 5.51 0.00 39.32 2.92
4158 4769 1.070604 CCCTACCATCTGGCCATCAT 58.929 55.000 5.51 0.00 39.32 2.45
4159 4770 0.327480 ACCCTACCATCTGGCCATCA 60.327 55.000 5.51 0.00 39.32 3.07
4160 4771 0.109342 CACCCTACCATCTGGCCATC 59.891 60.000 5.51 0.00 39.32 3.51
4161 4772 0.624500 ACACCCTACCATCTGGCCAT 60.625 55.000 5.51 0.00 39.32 4.40
4162 4773 1.229820 ACACCCTACCATCTGGCCA 60.230 57.895 4.71 4.71 39.32 5.36
4163 4774 1.271840 TGACACCCTACCATCTGGCC 61.272 60.000 0.00 0.00 39.32 5.36
4164 4775 0.618458 TTGACACCCTACCATCTGGC 59.382 55.000 0.00 0.00 39.32 4.85
4165 4776 1.628340 TGTTGACACCCTACCATCTGG 59.372 52.381 0.00 0.00 42.17 3.86
4166 4777 3.273434 CATGTTGACACCCTACCATCTG 58.727 50.000 0.00 0.00 0.00 2.90
4167 4778 2.239654 CCATGTTGACACCCTACCATCT 59.760 50.000 0.00 0.00 0.00 2.90
4168 4779 2.643551 CCATGTTGACACCCTACCATC 58.356 52.381 0.00 0.00 0.00 3.51
4169 4780 1.340991 GCCATGTTGACACCCTACCAT 60.341 52.381 0.00 0.00 0.00 3.55
4170 4781 0.037590 GCCATGTTGACACCCTACCA 59.962 55.000 0.00 0.00 0.00 3.25
4171 4782 0.328258 AGCCATGTTGACACCCTACC 59.672 55.000 0.00 0.00 0.00 3.18
4172 4783 2.200373 AAGCCATGTTGACACCCTAC 57.800 50.000 0.00 0.00 0.00 3.18
4173 4784 2.513753 CAAAGCCATGTTGACACCCTA 58.486 47.619 0.00 0.00 0.00 3.53
4174 4785 1.331214 CAAAGCCATGTTGACACCCT 58.669 50.000 0.00 0.00 0.00 4.34
4175 4786 0.318120 CCAAAGCCATGTTGACACCC 59.682 55.000 0.00 0.00 0.00 4.61
4176 4787 1.039856 ACCAAAGCCATGTTGACACC 58.960 50.000 0.00 0.00 0.00 4.16
4177 4788 2.351738 GCTACCAAAGCCATGTTGACAC 60.352 50.000 0.00 0.00 46.25 3.67
4178 4789 1.885887 GCTACCAAAGCCATGTTGACA 59.114 47.619 0.00 0.00 46.25 3.58
4179 4790 2.636768 GCTACCAAAGCCATGTTGAC 57.363 50.000 0.00 0.00 46.25 3.18
4189 4800 3.377439 GGAAACAAAACGGCTACCAAAG 58.623 45.455 0.00 0.00 0.00 2.77
4190 4801 2.223525 CGGAAACAAAACGGCTACCAAA 60.224 45.455 0.00 0.00 0.00 3.28
4191 4802 1.334243 CGGAAACAAAACGGCTACCAA 59.666 47.619 0.00 0.00 0.00 3.67
4192 4803 0.945813 CGGAAACAAAACGGCTACCA 59.054 50.000 0.00 0.00 0.00 3.25
4193 4804 0.239082 CCGGAAACAAAACGGCTACC 59.761 55.000 0.00 0.00 41.23 3.18
4194 4805 3.759550 CCGGAAACAAAACGGCTAC 57.240 52.632 0.00 0.00 41.23 3.58
4199 4810 2.290082 GCACGCCGGAAACAAAACG 61.290 57.895 5.05 0.00 0.00 3.60
4200 4811 0.933047 GAGCACGCCGGAAACAAAAC 60.933 55.000 5.05 0.00 0.00 2.43
4201 4812 1.357334 GAGCACGCCGGAAACAAAA 59.643 52.632 5.05 0.00 0.00 2.44
4202 4813 2.887889 CGAGCACGCCGGAAACAAA 61.888 57.895 5.05 0.00 0.00 2.83
4203 4814 3.342627 CGAGCACGCCGGAAACAA 61.343 61.111 5.05 0.00 0.00 2.83
4204 4815 2.215465 TATCGAGCACGCCGGAAACA 62.215 55.000 5.05 0.00 39.58 2.83
4205 4816 1.480219 CTATCGAGCACGCCGGAAAC 61.480 60.000 5.05 0.00 39.58 2.78
4206 4817 1.226859 CTATCGAGCACGCCGGAAA 60.227 57.895 5.05 0.00 39.58 3.13
4207 4818 1.659622 TTCTATCGAGCACGCCGGAA 61.660 55.000 5.05 0.16 39.58 4.30
4208 4819 1.452953 ATTCTATCGAGCACGCCGGA 61.453 55.000 5.05 0.00 39.58 5.14
4209 4820 0.597637 AATTCTATCGAGCACGCCGG 60.598 55.000 0.00 0.00 39.58 6.13
4210 4821 1.190323 GAAATTCTATCGAGCACGCCG 59.810 52.381 0.00 0.00 39.58 6.46
4211 4822 1.527311 GGAAATTCTATCGAGCACGCC 59.473 52.381 0.00 0.00 39.58 5.68
4212 4823 2.474816 AGGAAATTCTATCGAGCACGC 58.525 47.619 0.00 0.00 39.58 5.34
4213 4824 4.330074 ACAAAGGAAATTCTATCGAGCACG 59.670 41.667 0.00 0.00 41.26 5.34
4214 4825 5.582665 AGACAAAGGAAATTCTATCGAGCAC 59.417 40.000 0.00 0.00 0.00 4.40
4215 4826 5.734720 AGACAAAGGAAATTCTATCGAGCA 58.265 37.500 0.00 0.00 0.00 4.26
4216 4827 5.051374 CGAGACAAAGGAAATTCTATCGAGC 60.051 44.000 0.00 0.00 0.00 5.03
4217 4828 5.051374 GCGAGACAAAGGAAATTCTATCGAG 60.051 44.000 1.39 0.00 0.00 4.04
4218 4829 4.804139 GCGAGACAAAGGAAATTCTATCGA 59.196 41.667 1.39 0.00 0.00 3.59
4219 4830 4.025647 GGCGAGACAAAGGAAATTCTATCG 60.026 45.833 0.00 0.00 0.00 2.92
4220 4831 4.876107 TGGCGAGACAAAGGAAATTCTATC 59.124 41.667 0.00 0.00 0.00 2.08
4221 4832 4.843728 TGGCGAGACAAAGGAAATTCTAT 58.156 39.130 0.00 0.00 0.00 1.98
4222 4833 4.280436 TGGCGAGACAAAGGAAATTCTA 57.720 40.909 0.00 0.00 0.00 2.10
4223 4834 3.140325 TGGCGAGACAAAGGAAATTCT 57.860 42.857 0.00 0.00 0.00 2.40
4224 4835 3.191371 ACATGGCGAGACAAAGGAAATTC 59.809 43.478 0.00 0.00 0.00 2.17
4225 4836 3.157087 ACATGGCGAGACAAAGGAAATT 58.843 40.909 0.00 0.00 0.00 1.82
4226 4837 2.795329 ACATGGCGAGACAAAGGAAAT 58.205 42.857 0.00 0.00 0.00 2.17
4227 4838 2.270352 ACATGGCGAGACAAAGGAAA 57.730 45.000 0.00 0.00 0.00 3.13
4228 4839 2.270352 AACATGGCGAGACAAAGGAA 57.730 45.000 0.00 0.00 0.00 3.36
4229 4840 2.270352 AAACATGGCGAGACAAAGGA 57.730 45.000 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.