Multiple sequence alignment - TraesCS6B01G350100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G350100 chr6B 100.000 2779 0 0 1 2779 615229245 615232023 0.000000e+00 5132.0
1 TraesCS6B01G350100 chr6B 93.660 2082 75 19 720 2779 615166709 615168755 0.000000e+00 3061.0
2 TraesCS6B01G350100 chr6B 90.114 2013 153 22 1 1997 615274393 615276375 0.000000e+00 2573.0
3 TraesCS6B01G350100 chr6B 81.507 584 76 17 1082 1643 615605438 615606011 4.220000e-123 451.0
4 TraesCS6B01G350100 chr6B 86.667 210 19 7 1998 2201 615276678 615276884 1.000000e-54 224.0
5 TraesCS6B01G350100 chr6B 76.386 415 79 11 2361 2759 615289370 615289781 3.630000e-49 206.0
6 TraesCS6B01G350100 chr6B 87.805 82 7 1 1082 1160 615294926 615295007 2.950000e-15 93.5
7 TraesCS6B01G350100 chr6D 92.857 1092 53 11 723 1798 409583813 409584895 0.000000e+00 1561.0
8 TraesCS6B01G350100 chr6D 88.943 1022 79 19 1766 2779 409516947 409517942 0.000000e+00 1230.0
9 TraesCS6B01G350100 chr6D 89.858 986 58 13 720 1671 409515933 409516910 0.000000e+00 1229.0
10 TraesCS6B01G350100 chr6D 91.912 408 28 5 1 406 409583096 409583500 1.440000e-157 566.0
11 TraesCS6B01G350100 chr6D 80.815 589 68 27 1082 1643 409655215 409655785 1.190000e-113 420.0
12 TraesCS6B01G350100 chr6D 88.843 242 21 4 97 336 80600358 80600121 2.710000e-75 292.0
13 TraesCS6B01G350100 chr6D 94.667 75 4 0 720 794 409583484 409583558 1.750000e-22 117.0
14 TraesCS6B01G350100 chr6D 94.118 68 3 1 340 406 409515882 409515949 4.900000e-18 102.0
15 TraesCS6B01G350100 chr6A 88.615 1256 89 33 779 1997 554855277 554856515 0.000000e+00 1478.0
16 TraesCS6B01G350100 chr6A 80.068 587 88 16 1082 1643 555088983 555089565 2.580000e-110 409.0
17 TraesCS6B01G350100 chr6A 79.775 267 46 7 87 350 594218998 594218737 1.310000e-43 187.0
18 TraesCS6B01G350100 chr6A 78.571 280 55 4 70 348 486271509 486271784 2.200000e-41 180.0
19 TraesCS6B01G350100 chr1A 85.878 262 29 4 87 344 434422683 434422940 3.530000e-69 272.0
20 TraesCS6B01G350100 chr1A 85.441 261 29 9 87 344 3221784 3221530 2.120000e-66 263.0
21 TraesCS6B01G350100 chr1A 80.586 273 46 6 2361 2629 22630792 22631061 1.300000e-48 204.0
22 TraesCS6B01G350100 chr3B 85.328 259 30 4 87 344 97755892 97756143 7.630000e-66 261.0
23 TraesCS6B01G350100 chr3B 85.514 214 20 6 410 616 579317873 579317664 2.170000e-51 213.0
24 TraesCS6B01G350100 chr2D 85.271 258 33 3 91 346 38627205 38626951 7.630000e-66 261.0
25 TraesCS6B01G350100 chr2D 84.906 212 22 5 409 614 327753888 327753681 3.630000e-49 206.0
26 TraesCS6B01G350100 chr2D 75.472 212 30 10 497 706 523642361 523642170 1.770000e-12 84.2
27 TraesCS6B01G350100 chr1D 85.385 260 28 5 87 344 44977346 44977095 7.630000e-66 261.0
28 TraesCS6B01G350100 chr1D 82.927 164 28 0 1416 1579 366475659 366475496 6.200000e-32 148.0
29 TraesCS6B01G350100 chr3A 84.942 259 31 4 87 344 69662542 69662793 3.550000e-64 255.0
30 TraesCS6B01G350100 chr3A 77.215 237 36 3 468 704 744561469 744561687 3.760000e-24 122.0
31 TraesCS6B01G350100 chr4D 82.332 283 42 8 2373 2650 449043292 449043013 3.580000e-59 239.0
32 TraesCS6B01G350100 chr4D 80.328 305 33 7 409 706 208562620 208562336 3.630000e-49 206.0
33 TraesCS6B01G350100 chr4A 82.463 268 43 3 87 353 606414105 606413841 5.990000e-57 231.0
34 TraesCS6B01G350100 chr4A 77.848 316 62 7 2364 2674 45331411 45331099 3.650000e-44 189.0
35 TraesCS6B01G350100 chr4B 81.648 267 44 3 82 348 1090093 1090354 1.680000e-52 217.0
36 TraesCS6B01G350100 chr4B 84.579 214 24 5 410 616 620380699 620380488 1.300000e-48 204.0
37 TraesCS6B01G350100 chr4B 84.579 214 24 5 410 616 620561059 620560848 1.300000e-48 204.0
38 TraesCS6B01G350100 chr4B 84.186 215 25 5 409 616 620491444 620491232 1.690000e-47 200.0
39 TraesCS6B01G350100 chr1B 80.000 330 31 15 409 724 108840920 108841228 7.800000e-51 211.0
40 TraesCS6B01G350100 chr1B 77.918 317 37 13 401 706 112747965 112748259 1.710000e-37 167.0
41 TraesCS6B01G350100 chr5A 80.727 275 43 9 2361 2629 595543352 595543082 3.630000e-49 206.0
42 TraesCS6B01G350100 chr5A 79.153 307 33 9 409 706 600290219 600290503 1.700000e-42 183.0
43 TraesCS6B01G350100 chr5A 82.407 108 16 3 612 719 545530208 545530312 1.060000e-14 91.6
44 TraesCS6B01G350100 chr2B 84.112 214 24 6 410 616 97493124 97492914 6.070000e-47 198.0
45 TraesCS6B01G350100 chr2B 84.038 213 26 5 409 616 131107899 131107690 6.070000e-47 198.0
46 TraesCS6B01G350100 chr2B 78.986 138 27 2 468 604 388892495 388892631 2.950000e-15 93.5
47 TraesCS6B01G350100 chr5D 79.505 283 49 5 2361 2637 476159694 476159415 2.820000e-45 193.0
48 TraesCS6B01G350100 chr5B 79.554 269 46 8 2362 2624 491441396 491441131 1.700000e-42 183.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G350100 chr6B 615229245 615232023 2778 False 5132.000000 5132 100.000000 1 2779 1 chr6B.!!$F2 2778
1 TraesCS6B01G350100 chr6B 615166709 615168755 2046 False 3061.000000 3061 93.660000 720 2779 1 chr6B.!!$F1 2059
2 TraesCS6B01G350100 chr6B 615274393 615276884 2491 False 1398.500000 2573 88.390500 1 2201 2 chr6B.!!$F6 2200
3 TraesCS6B01G350100 chr6B 615605438 615606011 573 False 451.000000 451 81.507000 1082 1643 1 chr6B.!!$F5 561
4 TraesCS6B01G350100 chr6D 409515882 409517942 2060 False 853.666667 1230 90.973000 340 2779 3 chr6D.!!$F2 2439
5 TraesCS6B01G350100 chr6D 409583096 409584895 1799 False 748.000000 1561 93.145333 1 1798 3 chr6D.!!$F3 1797
6 TraesCS6B01G350100 chr6D 409655215 409655785 570 False 420.000000 420 80.815000 1082 1643 1 chr6D.!!$F1 561
7 TraesCS6B01G350100 chr6A 554855277 554856515 1238 False 1478.000000 1478 88.615000 779 1997 1 chr6A.!!$F2 1218
8 TraesCS6B01G350100 chr6A 555088983 555089565 582 False 409.000000 409 80.068000 1082 1643 1 chr6A.!!$F3 561

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
960 1014 0.109827 TTCAAATGCGCGTGGACATG 60.11 50.0 8.43 0.0 0.0 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2642 3118 1.497278 CACGCACCCGTCAATTCTG 59.503 57.895 0.0 0.0 46.39 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
336 337 9.563898 CTATACGCACTATATTATGAAACGGAA 57.436 33.333 0.00 0.00 0.00 4.30
337 338 8.821147 ATACGCACTATATTATGAAACGGAAA 57.179 30.769 0.00 0.00 0.00 3.13
431 433 2.038659 CCAACCTGTGGTTTGATGGTT 58.961 47.619 0.00 0.00 44.33 3.67
432 434 3.226777 CCAACCTGTGGTTTGATGGTTA 58.773 45.455 0.00 0.00 44.33 2.85
433 435 3.255642 CCAACCTGTGGTTTGATGGTTAG 59.744 47.826 0.00 0.00 44.33 2.34
434 436 4.141287 CAACCTGTGGTTTGATGGTTAGA 58.859 43.478 0.00 0.00 44.33 2.10
437 439 3.347216 CTGTGGTTTGATGGTTAGAGGG 58.653 50.000 0.00 0.00 0.00 4.30
438 440 2.983192 TGTGGTTTGATGGTTAGAGGGA 59.017 45.455 0.00 0.00 0.00 4.20
439 441 3.244770 TGTGGTTTGATGGTTAGAGGGAC 60.245 47.826 0.00 0.00 0.00 4.46
441 443 3.009033 TGGTTTGATGGTTAGAGGGACTG 59.991 47.826 0.00 0.00 41.55 3.51
453 455 1.209747 GAGGGACTGTGTGGTATTCCC 59.790 57.143 0.00 0.00 45.71 3.97
477 479 2.202987 CCAGGGTCTGATGCTCGC 60.203 66.667 0.00 0.00 32.44 5.03
485 487 3.316308 GGGTCTGATGCTCGCATTTATTT 59.684 43.478 5.79 0.00 36.70 1.40
501 503 8.971321 CGCATTTATTTCTGGATTTATTTCAGG 58.029 33.333 0.00 0.00 0.00 3.86
508 510 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
512 514 6.127479 TGGATTTATTTCAGGATTTTCGGTGG 60.127 38.462 0.00 0.00 0.00 4.61
515 517 2.649531 TTCAGGATTTTCGGTGGTGT 57.350 45.000 0.00 0.00 0.00 4.16
522 524 1.686355 TTTTCGGTGGTGTGCATTCT 58.314 45.000 0.00 0.00 0.00 2.40
535 537 1.693606 TGCATTCTGTGTGAGGAGACA 59.306 47.619 0.00 0.00 0.00 3.41
560 562 2.517875 CGACGACGGGGTCCCTAT 60.518 66.667 8.15 0.00 33.30 2.57
562 564 1.454479 GACGACGGGGTCCCTATGA 60.454 63.158 8.15 0.00 0.00 2.15
598 600 7.731882 ATTTCAAGATGATATGTGAGCTCAG 57.268 36.000 18.89 0.24 0.00 3.35
601 603 5.597594 TCAAGATGATATGTGAGCTCAGTCT 59.402 40.000 18.89 7.26 0.00 3.24
622 624 3.297134 TTTGGAGGTGCTCAGTCTTTT 57.703 42.857 0.00 0.00 31.08 2.27
624 626 1.202806 TGGAGGTGCTCAGTCTTTTGG 60.203 52.381 0.00 0.00 31.08 3.28
635 637 5.668471 CTCAGTCTTTTGGAGATGCTCATA 58.332 41.667 0.00 0.00 36.61 2.15
658 660 0.653323 GTAAAGTGTGCGTGTGTGCG 60.653 55.000 0.00 0.00 37.81 5.34
665 667 0.233590 GTGCGTGTGTGCGTTCATAA 59.766 50.000 0.00 0.00 37.81 1.90
670 672 2.732500 CGTGTGTGCGTTCATAAAGGTA 59.267 45.455 0.00 0.00 0.00 3.08
677 679 4.269363 GTGCGTTCATAAAGGTAAGCGTAT 59.731 41.667 0.00 0.00 0.00 3.06
693 695 3.822996 GCGTATGCGAGTGTATATGAGT 58.177 45.455 7.60 0.00 41.33 3.41
711 718 2.287915 GAGTGTTTGCGTCTGTGTTCAT 59.712 45.455 0.00 0.00 0.00 2.57
717 724 5.065346 TGTTTGCGTCTGTGTTCATAAAGAA 59.935 36.000 0.00 0.00 0.00 2.52
718 725 5.743026 TTGCGTCTGTGTTCATAAAGAAA 57.257 34.783 0.00 0.00 38.13 2.52
719 726 5.743026 TGCGTCTGTGTTCATAAAGAAAA 57.257 34.783 0.00 0.00 38.13 2.29
720 727 6.125327 TGCGTCTGTGTTCATAAAGAAAAA 57.875 33.333 0.00 0.00 38.13 1.94
721 728 6.734137 TGCGTCTGTGTTCATAAAGAAAAAT 58.266 32.000 0.00 0.00 38.13 1.82
722 729 7.866729 TGCGTCTGTGTTCATAAAGAAAAATA 58.133 30.769 0.00 0.00 38.13 1.40
723 730 8.015087 TGCGTCTGTGTTCATAAAGAAAAATAG 58.985 33.333 0.00 0.00 38.13 1.73
752 759 4.035208 AGTTTGGCTTTATAAGATTCGGCG 59.965 41.667 0.00 0.00 0.00 6.46
756 763 4.034742 TGGCTTTATAAGATTCGGCGAAAC 59.965 41.667 27.40 23.68 0.00 2.78
911 928 1.436600 CATTTGCTCACTCACTCGCT 58.563 50.000 0.00 0.00 0.00 4.93
957 1011 1.327292 CGTTTCAAATGCGCGTGGAC 61.327 55.000 8.43 3.28 0.00 4.02
958 1012 0.317436 GTTTCAAATGCGCGTGGACA 60.317 50.000 8.43 0.00 0.00 4.02
959 1013 0.595588 TTTCAAATGCGCGTGGACAT 59.404 45.000 8.43 0.00 0.00 3.06
960 1014 0.109827 TTCAAATGCGCGTGGACATG 60.110 50.000 8.43 0.00 0.00 3.21
961 1015 2.153945 CAAATGCGCGTGGACATGC 61.154 57.895 8.43 6.44 39.85 4.06
1037 1103 2.116983 AACTCACACAGCGCCCTCAT 62.117 55.000 2.29 0.00 0.00 2.90
1038 1104 1.812922 CTCACACAGCGCCCTCATC 60.813 63.158 2.29 0.00 0.00 2.92
1051 1122 1.384525 CCTCATCTCCGTCGTTCTCT 58.615 55.000 0.00 0.00 0.00 3.10
1136 1216 1.195115 CTTCCATCTCCCGAACTCCA 58.805 55.000 0.00 0.00 0.00 3.86
1137 1217 1.137872 CTTCCATCTCCCGAACTCCAG 59.862 57.143 0.00 0.00 0.00 3.86
1287 1412 3.845259 GGACGGGTGCATCGGCTA 61.845 66.667 15.97 0.00 41.91 3.93
1821 1970 5.522456 TCATTCGCATATTTGAAAGGATGC 58.478 37.500 14.30 14.30 41.03 3.91
2115 2581 2.636830 CTTGGCATCTCTCGTTCCAAT 58.363 47.619 0.00 0.00 36.37 3.16
2175 2642 1.598130 ACAACTCAGAGCGGTTGGC 60.598 57.895 0.00 0.00 44.71 4.52
2433 2903 6.592798 TTCAACACTTCAAACTTAGTACGG 57.407 37.500 0.00 0.00 0.00 4.02
2436 2906 3.181463 ACACTTCAAACTTAGTACGGCCA 60.181 43.478 2.24 0.00 0.00 5.36
2530 3000 0.532573 AGAGCCGAGCGAGAAAATCA 59.467 50.000 0.00 0.00 0.00 2.57
2642 3118 1.598701 GGCAATTGAGTGGCCAGACC 61.599 60.000 5.11 0.00 46.92 3.85
2675 3151 2.980233 GTGCTCCCACACCTGCAC 60.980 66.667 0.00 0.00 46.66 4.57
2724 3202 0.179142 GTCTTCTTAGGTCGACGCCC 60.179 60.000 9.92 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
336 337 8.772250 TCTCCTGAAATCCAATTGTATACTCTT 58.228 33.333 4.43 0.00 0.00 2.85
337 338 8.324191 TCTCCTGAAATCCAATTGTATACTCT 57.676 34.615 4.43 0.00 0.00 3.24
424 426 2.567169 CACACAGTCCCTCTAACCATCA 59.433 50.000 0.00 0.00 0.00 3.07
431 433 3.371965 GGAATACCACACAGTCCCTCTA 58.628 50.000 0.00 0.00 35.97 2.43
432 434 2.188817 GGAATACCACACAGTCCCTCT 58.811 52.381 0.00 0.00 35.97 3.69
433 435 1.209747 GGGAATACCACACAGTCCCTC 59.790 57.143 0.72 0.00 44.01 4.30
434 436 1.286248 GGGAATACCACACAGTCCCT 58.714 55.000 0.72 0.00 44.01 4.20
437 439 1.679032 GGCTGGGAATACCACACAGTC 60.679 57.143 0.00 0.00 46.80 3.51
438 440 0.328258 GGCTGGGAATACCACACAGT 59.672 55.000 0.00 0.00 46.80 3.55
439 441 0.394352 GGGCTGGGAATACCACACAG 60.394 60.000 0.00 0.00 46.80 3.66
440 442 1.136961 TGGGCTGGGAATACCACACA 61.137 55.000 0.00 0.00 46.80 3.72
441 443 1.688811 TGGGCTGGGAATACCACAC 59.311 57.895 0.00 0.00 46.80 3.82
465 467 5.203370 CAGAAATAAATGCGAGCATCAGAC 58.797 41.667 11.26 2.27 35.31 3.51
470 472 5.779529 AATCCAGAAATAAATGCGAGCAT 57.220 34.783 4.52 4.52 38.46 3.79
472 474 8.579682 AAATAAATCCAGAAATAAATGCGAGC 57.420 30.769 0.00 0.00 0.00 5.03
485 487 6.889722 ACCGAAAATCCTGAAATAAATCCAGA 59.110 34.615 0.00 0.00 0.00 3.86
501 503 2.228822 AGAATGCACACCACCGAAAATC 59.771 45.455 0.00 0.00 0.00 2.17
506 508 0.884259 CACAGAATGCACACCACCGA 60.884 55.000 0.00 0.00 42.53 4.69
508 510 0.311790 CACACAGAATGCACACCACC 59.688 55.000 0.00 0.00 42.53 4.61
512 514 1.802960 CTCCTCACACAGAATGCACAC 59.197 52.381 0.00 0.00 42.53 3.82
515 517 1.693606 TGTCTCCTCACACAGAATGCA 59.306 47.619 0.00 0.00 42.53 3.96
522 524 0.608130 CGGGAATGTCTCCTCACACA 59.392 55.000 0.00 0.00 44.68 3.72
551 553 2.040178 ACGAAGTCATCATAGGGACCC 58.960 52.381 0.59 0.59 29.74 4.46
555 557 7.786178 TGAAATTTACGAAGTCATCATAGGG 57.214 36.000 0.00 0.00 43.93 3.53
560 562 8.546597 TCATCTTGAAATTTACGAAGTCATCA 57.453 30.769 0.00 0.00 43.93 3.07
590 592 2.050144 ACCTCCAAAAGACTGAGCTCA 58.950 47.619 17.19 17.19 0.00 4.26
591 593 2.421619 CACCTCCAAAAGACTGAGCTC 58.578 52.381 6.82 6.82 0.00 4.09
592 594 1.544314 GCACCTCCAAAAGACTGAGCT 60.544 52.381 0.00 0.00 0.00 4.09
598 600 2.147150 GACTGAGCACCTCCAAAAGAC 58.853 52.381 0.00 0.00 0.00 3.01
601 603 3.297134 AAAGACTGAGCACCTCCAAAA 57.703 42.857 0.00 0.00 0.00 2.44
622 624 3.344535 TTACCCCTATGAGCATCTCCA 57.655 47.619 0.00 0.00 34.92 3.86
624 626 4.101741 ACACTTTACCCCTATGAGCATCTC 59.898 45.833 0.00 0.00 34.92 2.75
635 637 0.534203 CACACGCACACTTTACCCCT 60.534 55.000 0.00 0.00 0.00 4.79
658 660 4.505191 TCGCATACGCTTACCTTTATGAAC 59.495 41.667 0.00 0.00 39.84 3.18
665 667 1.203994 ACACTCGCATACGCTTACCTT 59.796 47.619 0.00 0.00 39.84 3.50
670 672 4.023107 ACTCATATACACTCGCATACGCTT 60.023 41.667 0.00 0.00 39.84 4.68
677 679 3.616821 GCAAACACTCATATACACTCGCA 59.383 43.478 0.00 0.00 0.00 5.10
693 695 4.572795 TCTTTATGAACACAGACGCAAACA 59.427 37.500 0.00 0.00 0.00 2.83
730 737 4.034742 TCGCCGAATCTTATAAAGCCAAAC 59.965 41.667 0.00 0.00 0.00 2.93
752 759 7.742556 ATACTACTGGTACTATCGGAGTTTC 57.257 40.000 0.00 0.00 39.81 2.78
816 827 6.441274 AGCTGTTCACACAATCATGTTTTAG 58.559 36.000 0.00 0.00 37.82 1.85
897 914 1.068287 GAACGAGCGAGTGAGTGAGC 61.068 60.000 0.00 0.00 0.00 4.26
1017 1081 1.292223 GAGGGCGCTGTGTGAGTTA 59.708 57.895 8.56 0.00 0.00 2.24
1021 1085 2.230994 GAGATGAGGGCGCTGTGTGA 62.231 60.000 8.56 0.00 0.00 3.58
1037 1103 0.323957 TCCTCAGAGAACGACGGAGA 59.676 55.000 0.00 0.00 0.00 3.71
1038 1104 0.730265 CTCCTCAGAGAACGACGGAG 59.270 60.000 0.00 0.00 43.39 4.63
1051 1122 3.131396 GAGAAAGTTTTGCGTCTCCTCA 58.869 45.455 0.00 0.00 32.08 3.86
1525 1656 3.596667 GAGCGCCGCGAGATCGTAT 62.597 63.158 18.91 0.00 42.22 3.06
1559 1690 2.035442 GGAAGTTGAGTCTGGCGCC 61.035 63.158 22.73 22.73 0.00 6.53
1595 1741 3.046087 AGAAGCCGACGACGACGA 61.046 61.111 20.63 0.00 42.66 4.20
1872 2021 4.166011 GCTTTGGCAGCGGCTACG 62.166 66.667 9.17 0.00 39.29 3.51
2115 2581 2.636778 TTCGCAGCCGTGTCTGAACA 62.637 55.000 1.43 0.00 36.19 3.18
2208 2675 7.779326 TCATTATTTTACATCATCTGCCCTGAA 59.221 33.333 0.00 0.00 0.00 3.02
2433 2903 4.510038 AATCATGATTTTATCGGCTGGC 57.490 40.909 15.36 0.00 0.00 4.85
2436 2906 6.256321 GCACAAAAATCATGATTTTATCGGCT 59.744 34.615 35.08 21.60 46.76 5.52
2530 3000 9.490379 ACTTATGACTTTTCATCTAAAACTCGT 57.510 29.630 0.00 0.00 41.87 4.18
2642 3118 1.497278 CACGCACCCGTCAATTCTG 59.503 57.895 0.00 0.00 46.39 3.02
2675 3151 2.478033 GCGGAAATTGGTAGGGGCG 61.478 63.158 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.