Multiple sequence alignment - TraesCS6B01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G349800 chr6B 100.000 3494 0 0 1 3494 614581102 614584595 0.000000e+00 6453.0
1 TraesCS6B01G349800 chr6B 98.132 2034 28 7 624 2649 614436662 614438693 0.000000e+00 3537.0
2 TraesCS6B01G349800 chr6B 97.160 2007 40 11 654 2649 614311379 614313379 0.000000e+00 3374.0
3 TraesCS6B01G349800 chr6B 88.870 1806 141 36 738 2520 636491366 636493134 0.000000e+00 2167.0
4 TraesCS6B01G349800 chr6B 92.857 1372 81 12 1150 2514 636585754 636584393 0.000000e+00 1975.0
5 TraesCS6B01G349800 chr6B 88.296 487 33 14 3020 3494 88253232 88253706 2.350000e-156 562.0
6 TraesCS6B01G349800 chr6B 82.135 459 58 16 3051 3493 542600208 542599758 4.260000e-99 372.0
7 TraesCS6B01G349800 chr6B 95.982 224 5 2 1 220 614436444 614436667 9.220000e-96 361.0
8 TraesCS6B01G349800 chr6B 82.993 294 25 11 819 1087 636586080 636585787 3.480000e-60 243.0
9 TraesCS6B01G349800 chr6B 87.313 134 12 4 2560 2690 636584382 636584251 7.810000e-32 148.0
10 TraesCS6B01G349800 chr6D 93.251 1867 92 12 1178 3022 409347234 409349088 0.000000e+00 2719.0
11 TraesCS6B01G349800 chr6D 90.988 1620 105 24 899 2506 422190634 422192224 0.000000e+00 2145.0
12 TraesCS6B01G349800 chr6D 89.499 1638 130 26 899 2523 422205544 422203936 0.000000e+00 2034.0
13 TraesCS6B01G349800 chr6D 85.201 473 28 14 654 1093 409346420 409346883 6.880000e-122 448.0
14 TraesCS6B01G349800 chr6D 83.696 184 22 7 2556 2733 422192225 422192406 2.160000e-37 167.0
15 TraesCS6B01G349800 chr6D 86.154 65 9 0 819 883 422190524 422190588 1.740000e-08 71.3
16 TraesCS6B01G349800 chr6A 94.750 1638 63 8 1178 2805 554824785 554826409 0.000000e+00 2527.0
17 TraesCS6B01G349800 chr6A 89.783 1801 137 26 904 2690 564910763 564908996 0.000000e+00 2263.0
18 TraesCS6B01G349800 chr6A 89.079 1868 143 39 889 2733 564974739 564976568 0.000000e+00 2263.0
19 TraesCS6B01G349800 chr6A 83.542 480 71 7 3020 3493 15763178 15762701 3.200000e-120 442.0
20 TraesCS6B01G349800 chr6A 83.721 473 38 12 654 1093 554823955 554824421 9.030000e-111 411.0
21 TraesCS6B01G349800 chr6A 88.372 129 11 3 2564 2689 564907833 564907706 6.040000e-33 152.0
22 TraesCS6B01G349800 chr6A 89.231 65 7 0 819 883 564974639 564974703 8.040000e-12 82.4
23 TraesCS6B01G349800 chr6A 100.000 39 0 0 819 857 564910886 564910848 4.840000e-09 73.1
24 TraesCS6B01G349800 chr7A 83.820 822 124 7 1317 2132 559361806 559362624 0.000000e+00 773.0
25 TraesCS6B01G349800 chr3B 98.511 403 6 0 222 624 430939859 430940261 0.000000e+00 712.0
26 TraesCS6B01G349800 chr3B 88.197 466 40 7 3042 3494 720853973 720854436 3.070000e-150 542.0
27 TraesCS6B01G349800 chr3B 85.743 498 46 5 3022 3494 779024318 779023821 1.450000e-138 503.0
28 TraesCS6B01G349800 chr5B 88.571 455 34 8 3042 3494 591610478 591610040 1.430000e-148 536.0
29 TraesCS6B01G349800 chr5B 82.645 484 63 18 3019 3494 708662305 708661835 3.250000e-110 409.0
30 TraesCS6B01G349800 chr5B 97.006 167 5 0 459 625 347396083 347395917 7.380000e-72 281.0
31 TraesCS6B01G349800 chr5B 86.580 231 30 1 3022 3252 606632300 606632071 1.610000e-63 254.0
32 TraesCS6B01G349800 chr7B 85.772 499 47 4 3020 3494 619629961 619630459 1.120000e-139 507.0
33 TraesCS6B01G349800 chr7B 85.804 479 57 7 3018 3494 629544267 629543798 6.740000e-137 497.0
34 TraesCS6B01G349800 chr7B 84.569 499 50 10 3020 3494 86205008 86204513 1.470000e-128 470.0
35 TraesCS6B01G349800 chr7B 94.894 235 10 2 226 460 311327968 311328200 1.980000e-97 366.0
36 TraesCS6B01G349800 chr3D 83.564 505 60 15 3008 3493 577483336 577483836 5.320000e-123 451.0
37 TraesCS6B01G349800 chr3D 84.687 431 55 9 3070 3493 586515030 586515456 1.500000e-113 420.0
38 TraesCS6B01G349800 chr1D 95.378 238 8 3 226 463 462934168 462933934 3.290000e-100 375.0
39 TraesCS6B01G349800 chr1D 94.958 238 11 1 226 463 462915691 462915455 4.260000e-99 372.0
40 TraesCS6B01G349800 chr1D 94.561 239 10 3 226 463 462913123 462912887 1.980000e-97 366.0
41 TraesCS6B01G349800 chr1D 94.561 239 10 3 226 463 462920351 462920115 1.980000e-97 366.0
42 TraesCS6B01G349800 chr1D 94.538 238 12 1 226 463 462927000 462926764 1.980000e-97 366.0
43 TraesCS6B01G349800 chr1D 94.538 238 9 3 226 463 462900296 462900063 7.130000e-97 364.0
44 TraesCS6B01G349800 chr1D 94.538 238 10 3 226 463 462924966 462924732 7.130000e-97 364.0
45 TraesCS6B01G349800 chr1D 97.041 169 5 0 459 627 462896952 462896784 5.710000e-73 285.0
46 TraesCS6B01G349800 chr1D 97.041 169 5 0 459 627 462904644 462904476 5.710000e-73 285.0
47 TraesCS6B01G349800 chr1D 97.041 169 4 1 459 627 462926230 462926063 2.050000e-72 283.0
48 TraesCS6B01G349800 chr1D 96.450 169 6 0 459 627 462891838 462891670 2.660000e-71 279.0
49 TraesCS6B01G349800 chr1D 96.450 169 6 0 459 627 462907183 462907015 2.660000e-71 279.0
50 TraesCS6B01G349800 chr1D 96.450 169 6 0 459 627 462966665 462966497 2.660000e-71 279.0
51 TraesCS6B01G349800 chr1D 95.858 169 7 0 459 627 462894388 462894220 1.240000e-69 274.0
52 TraesCS6B01G349800 chr5D 85.366 369 36 15 3135 3493 407360215 407360575 1.980000e-97 366.0
53 TraesCS6B01G349800 chr4B 91.770 243 14 4 3253 3494 627545002 627544765 2.010000e-87 333.0
54 TraesCS6B01G349800 chr2B 86.463 229 29 2 3022 3249 105382022 105382249 2.080000e-62 250.0
55 TraesCS6B01G349800 chr2B 85.714 231 31 2 3019 3249 71390504 71390732 3.480000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G349800 chr6B 614581102 614584595 3493 False 6453.000000 6453 100.000000 1 3494 1 chr6B.!!$F3 3493
1 TraesCS6B01G349800 chr6B 614311379 614313379 2000 False 3374.000000 3374 97.160000 654 2649 1 chr6B.!!$F2 1995
2 TraesCS6B01G349800 chr6B 636491366 636493134 1768 False 2167.000000 2167 88.870000 738 2520 1 chr6B.!!$F4 1782
3 TraesCS6B01G349800 chr6B 614436444 614438693 2249 False 1949.000000 3537 97.057000 1 2649 2 chr6B.!!$F5 2648
4 TraesCS6B01G349800 chr6B 636584251 636586080 1829 True 788.666667 1975 87.721000 819 2690 3 chr6B.!!$R2 1871
5 TraesCS6B01G349800 chr6D 422203936 422205544 1608 True 2034.000000 2034 89.499000 899 2523 1 chr6D.!!$R1 1624
6 TraesCS6B01G349800 chr6D 409346420 409349088 2668 False 1583.500000 2719 89.226000 654 3022 2 chr6D.!!$F1 2368
7 TraesCS6B01G349800 chr6D 422190524 422192406 1882 False 794.433333 2145 86.946000 819 2733 3 chr6D.!!$F2 1914
8 TraesCS6B01G349800 chr6A 554823955 554826409 2454 False 1469.000000 2527 89.235500 654 2805 2 chr6A.!!$F1 2151
9 TraesCS6B01G349800 chr6A 564974639 564976568 1929 False 1172.700000 2263 89.155000 819 2733 2 chr6A.!!$F2 1914
10 TraesCS6B01G349800 chr6A 564907706 564910886 3180 True 829.366667 2263 92.718333 819 2690 3 chr6A.!!$R2 1871
11 TraesCS6B01G349800 chr7A 559361806 559362624 818 False 773.000000 773 83.820000 1317 2132 1 chr7A.!!$F1 815
12 TraesCS6B01G349800 chr3D 577483336 577483836 500 False 451.000000 451 83.564000 3008 3493 1 chr3D.!!$F1 485
13 TraesCS6B01G349800 chr1D 462912887 462915691 2804 True 369.000000 372 94.759500 226 463 2 chr1D.!!$R6 237
14 TraesCS6B01G349800 chr1D 462924732 462927000 2268 True 337.666667 366 95.372333 226 627 3 chr1D.!!$R7 401
15 TraesCS6B01G349800 chr1D 462891670 462900296 8626 True 300.500000 364 95.971750 226 627 4 chr1D.!!$R4 401
16 TraesCS6B01G349800 chr1D 462904476 462907183 2707 True 282.000000 285 96.745500 459 627 2 chr1D.!!$R5 168

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 2335 0.465097 CGAAGGCCTGCTCCATCATT 60.465 55.0 5.69 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2717 12391 1.065928 AGTATGCTGCCGTACGAGC 59.934 57.895 18.76 18.91 38.27 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 4.277476 TCATCCGGGTTATTCAGCAAATT 58.723 39.130 0.00 0.00 0.00 1.82
192 197 6.567687 TCCATGTTCTTGCGAATTTTCTTA 57.432 33.333 0.00 0.00 0.00 2.10
221 226 9.835389 TTGGTTTATACAGTACTGTTTTAGTGT 57.165 29.630 32.15 9.47 41.83 3.55
365 370 0.672711 GCTTCGGGCGGTTTTAGTCT 60.673 55.000 0.00 0.00 0.00 3.24
376 381 3.558033 GGTTTTAGTCTGGGGTGAACAA 58.442 45.455 0.00 0.00 0.00 2.83
385 390 3.442273 TCTGGGGTGAACAATAAAATCGC 59.558 43.478 0.00 0.00 0.00 4.58
390 395 5.107259 GGGGTGAACAATAAAATCGCAAAAC 60.107 40.000 0.00 0.00 0.00 2.43
399 404 8.768955 ACAATAAAATCGCAAAACAATAGCAAA 58.231 25.926 0.00 0.00 0.00 3.68
402 407 9.810231 ATAAAATCGCAAAACAATAGCAAAAAG 57.190 25.926 0.00 0.00 0.00 2.27
406 411 7.104326 TCGCAAAACAATAGCAAAAAGAATC 57.896 32.000 0.00 0.00 0.00 2.52
536 1642 5.064325 ACGAAAACTATCCGGTTTTGATAGC 59.936 40.000 0.00 0.00 45.62 2.97
588 1694 5.073311 TGAGGGACGATTTCTAAACTCTG 57.927 43.478 0.00 0.00 0.00 3.35
795 2334 1.147824 CGAAGGCCTGCTCCATCAT 59.852 57.895 5.69 0.00 0.00 2.45
796 2335 0.465097 CGAAGGCCTGCTCCATCATT 60.465 55.000 5.69 0.00 0.00 2.57
797 2336 1.772836 GAAGGCCTGCTCCATCATTT 58.227 50.000 5.69 0.00 0.00 2.32
798 2337 1.407979 GAAGGCCTGCTCCATCATTTG 59.592 52.381 5.69 0.00 0.00 2.32
800 2339 1.440476 GCCTGCTCCATCATTTGGC 59.560 57.895 0.00 0.00 46.01 4.52
801 2340 2.024590 GCCTGCTCCATCATTTGGCC 62.025 60.000 0.00 0.00 46.01 5.36
802 2341 0.685131 CCTGCTCCATCATTTGGCCA 60.685 55.000 0.00 0.00 46.01 5.36
803 2342 1.410004 CTGCTCCATCATTTGGCCAT 58.590 50.000 6.09 0.00 46.01 4.40
804 2343 1.760613 CTGCTCCATCATTTGGCCATT 59.239 47.619 6.09 0.00 46.01 3.16
805 2344 2.960384 CTGCTCCATCATTTGGCCATTA 59.040 45.455 6.09 0.00 46.01 1.90
806 2345 3.372897 TGCTCCATCATTTGGCCATTAA 58.627 40.909 6.09 0.00 46.01 1.40
807 2346 3.773667 TGCTCCATCATTTGGCCATTAAA 59.226 39.130 6.09 0.00 46.01 1.52
1803 4251 4.450122 GGACGTCGCTCGCGTACA 62.450 66.667 9.92 0.00 42.29 2.90
2111 8975 0.761187 ATGCCTACATCCTCACGCAT 59.239 50.000 0.00 0.00 32.32 4.73
2634 11014 5.105392 TGAGGGACATCCATTGTATTTTTGC 60.105 40.000 0.00 0.00 39.18 3.68
2717 12391 1.153745 GAGCAGCCACGACCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
2735 12409 1.065928 GCTCGTACGGCAGCATACT 59.934 57.895 20.43 0.00 35.56 2.12
2794 12475 0.613853 GGGGGCTGGGTTTAAAGGAC 60.614 60.000 0.00 0.00 0.00 3.85
2798 12479 2.525368 GGCTGGGTTTAAAGGACACAT 58.475 47.619 0.00 0.00 28.57 3.21
2813 12494 6.716934 AGGACACATACTAATAGTCTGGTG 57.283 41.667 10.00 12.07 33.03 4.17
2832 12513 8.764287 GTCTGGTGACTGAAAATTTATTTTTGG 58.236 33.333 2.28 2.15 38.73 3.28
2833 12514 7.440856 TCTGGTGACTGAAAATTTATTTTTGGC 59.559 33.333 2.28 2.53 39.86 4.52
2849 12543 3.907894 TTGGCCAGTCACGTTAAATTC 57.092 42.857 5.11 0.00 0.00 2.17
2859 12553 8.286800 CCAGTCACGTTAAATTCAGATTAAACA 58.713 33.333 0.00 0.00 0.00 2.83
2860 12554 9.658475 CAGTCACGTTAAATTCAGATTAAACAA 57.342 29.630 0.00 0.00 0.00 2.83
2930 12624 3.303881 TCAGTCGAATTCCTCACACAG 57.696 47.619 0.00 0.00 0.00 3.66
2943 12637 1.347378 TCACACAGCCTAACTCATGCA 59.653 47.619 0.00 0.00 0.00 3.96
3142 12848 3.518068 CCCCCAAGCGCCGATTTC 61.518 66.667 2.29 0.00 0.00 2.17
3161 12867 4.519610 GCCCATTATTCGGCCCAT 57.480 55.556 0.00 0.00 39.39 4.00
3166 12872 2.697751 CCCATTATTCGGCCCATTTTCA 59.302 45.455 0.00 0.00 0.00 2.69
3167 12873 3.324556 CCCATTATTCGGCCCATTTTCAT 59.675 43.478 0.00 0.00 0.00 2.57
3172 12878 1.378531 TCGGCCCATTTTCATCGAAG 58.621 50.000 0.00 0.00 0.00 3.79
3175 12881 2.358898 CGGCCCATTTTCATCGAAGAAT 59.641 45.455 3.62 0.00 43.58 2.40
3176 12882 3.181487 CGGCCCATTTTCATCGAAGAATT 60.181 43.478 3.62 0.00 43.58 2.17
3179 12885 4.678840 GCCCATTTTCATCGAAGAATTGCT 60.679 41.667 3.62 0.00 43.58 3.91
3180 12886 5.413499 CCCATTTTCATCGAAGAATTGCTT 58.587 37.500 3.62 0.00 43.58 3.91
3181 12887 5.290158 CCCATTTTCATCGAAGAATTGCTTG 59.710 40.000 3.62 0.00 43.58 4.01
3191 12897 3.360249 AGAATTGCTTGATATTGGCGC 57.640 42.857 0.00 0.00 0.00 6.53
3212 12918 0.949105 AATCGGCCCATATTCGACGC 60.949 55.000 0.00 0.00 35.70 5.19
3219 12925 1.545614 CCATATTCGACGCGGTTCGG 61.546 60.000 17.50 2.94 43.86 4.30
3220 12926 0.868602 CATATTCGACGCGGTTCGGT 60.869 55.000 17.50 10.21 43.86 4.69
3226 12932 2.935446 GACGCGGTTCGGTGTGTTC 61.935 63.158 12.47 0.00 43.86 3.18
3228 12934 2.589442 GCGGTTCGGTGTGTTCCA 60.589 61.111 0.00 0.00 0.00 3.53
3230 12936 1.068417 CGGTTCGGTGTGTTCCAGA 59.932 57.895 0.00 0.00 0.00 3.86
3232 12938 0.602905 GGTTCGGTGTGTTCCAGAGG 60.603 60.000 0.00 0.00 0.00 3.69
3233 12939 0.602905 GTTCGGTGTGTTCCAGAGGG 60.603 60.000 0.00 0.00 0.00 4.30
3234 12940 0.761323 TTCGGTGTGTTCCAGAGGGA 60.761 55.000 0.00 0.00 43.03 4.20
3282 12991 7.177216 TGCCTTCATAGTTCATCACAGAAAATT 59.823 33.333 0.00 0.00 0.00 1.82
3357 13066 7.433708 AAAACTCATATTTCATCACACGTCA 57.566 32.000 0.00 0.00 0.00 4.35
3358 13067 7.615582 AAACTCATATTTCATCACACGTCAT 57.384 32.000 0.00 0.00 0.00 3.06
3359 13068 7.615582 AACTCATATTTCATCACACGTCATT 57.384 32.000 0.00 0.00 0.00 2.57
3362 13071 6.112058 TCATATTTCATCACACGTCATTCCA 58.888 36.000 0.00 0.00 0.00 3.53
3386 13097 1.690219 CGCCCTTGAGCCTCCATAGT 61.690 60.000 0.00 0.00 0.00 2.12
3401 13112 2.477825 CATAGTTGCTCCACCAGATCG 58.522 52.381 0.00 0.00 0.00 3.69
3404 13115 0.320771 GTTGCTCCACCAGATCGTGT 60.321 55.000 0.89 0.00 31.47 4.49
3413 13124 1.229428 CCAGATCGTGTTGCAGTTGT 58.771 50.000 0.00 0.00 0.00 3.32
3428 13139 2.815503 CAGTTGTTGATGCATCTGTGGA 59.184 45.455 26.32 3.81 33.71 4.02
3434 13145 0.394192 GATGCATCTGTGGATCCCGA 59.606 55.000 19.70 3.51 44.65 5.14
3450 13161 1.273606 CCCGAATCTCCTGACGCATAT 59.726 52.381 0.00 0.00 0.00 1.78
3493 13204 2.002586 CGGTAGCTGGTGATCAACTTG 58.997 52.381 12.94 6.15 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 162 5.066505 GCAAGAACATGGAAACTAGTATGGG 59.933 44.000 0.00 0.00 0.00 4.00
158 163 5.220662 CGCAAGAACATGGAAACTAGTATGG 60.221 44.000 0.00 0.00 43.02 2.74
220 225 9.636879 GGACGAAAAATATACTTATCCCTCTAC 57.363 37.037 0.00 0.00 0.00 2.59
221 226 9.597681 AGGACGAAAAATATACTTATCCCTCTA 57.402 33.333 0.00 0.00 0.00 2.43
222 227 8.493787 AGGACGAAAAATATACTTATCCCTCT 57.506 34.615 0.00 0.00 0.00 3.69
223 228 7.541437 CGAGGACGAAAAATATACTTATCCCTC 59.459 40.741 0.00 0.00 42.66 4.30
224 229 7.232127 TCGAGGACGAAAAATATACTTATCCCT 59.768 37.037 0.00 0.00 45.74 4.20
365 370 3.157881 TGCGATTTTATTGTTCACCCCA 58.842 40.909 0.00 0.00 0.00 4.96
376 381 9.810231 CTTTTTGCTATTGTTTTGCGATTTTAT 57.190 25.926 0.00 0.00 0.00 1.40
536 1642 1.402984 CGGAGAGTTTTCGTCCCTCAG 60.403 57.143 0.00 0.00 0.00 3.35
588 1694 2.833631 TTCGTCCTCAAACTCTTCCC 57.166 50.000 0.00 0.00 0.00 3.97
598 1704 8.258850 AGGGATAAGTATATTTTTCGTCCTCA 57.741 34.615 0.00 0.00 0.00 3.86
651 2076 9.713740 GCTTTCTTACAAATCATCATCTACTTG 57.286 33.333 0.00 0.00 0.00 3.16
799 2338 3.186909 GGTCAAAAGGCGATTTAATGGC 58.813 45.455 3.31 3.31 0.00 4.40
800 2339 3.434637 CGGTCAAAAGGCGATTTAATGG 58.565 45.455 0.00 0.00 0.00 3.16
801 2340 2.851824 GCGGTCAAAAGGCGATTTAATG 59.148 45.455 0.00 0.00 0.00 1.90
802 2341 2.490115 TGCGGTCAAAAGGCGATTTAAT 59.510 40.909 0.00 0.00 0.00 1.40
803 2342 1.880675 TGCGGTCAAAAGGCGATTTAA 59.119 42.857 0.00 0.00 0.00 1.52
804 2343 1.198178 GTGCGGTCAAAAGGCGATTTA 59.802 47.619 0.00 0.00 0.00 1.40
805 2344 0.039527 GTGCGGTCAAAAGGCGATTT 60.040 50.000 0.00 0.00 0.00 2.17
806 2345 1.579429 GTGCGGTCAAAAGGCGATT 59.421 52.632 0.00 0.00 0.00 3.34
807 2346 2.332654 GGTGCGGTCAAAAGGCGAT 61.333 57.895 0.00 0.00 0.00 4.58
2196 10248 3.909732 TCAGTTGGGTCATGGTTTTCTT 58.090 40.909 0.00 0.00 0.00 2.52
2197 10249 3.593442 TCAGTTGGGTCATGGTTTTCT 57.407 42.857 0.00 0.00 0.00 2.52
2717 12391 1.065928 AGTATGCTGCCGTACGAGC 59.934 57.895 18.76 18.91 38.27 5.03
2735 12409 2.211250 AACGCTCTACCACTACTCCA 57.789 50.000 0.00 0.00 0.00 3.86
2810 12491 6.484977 TGGCCAAAAATAAATTTTCAGTCACC 59.515 34.615 0.61 0.00 39.20 4.02
2813 12494 7.440856 TGACTGGCCAAAAATAAATTTTCAGTC 59.559 33.333 24.01 24.01 45.72 3.51
2832 12513 4.946784 ATCTGAATTTAACGTGACTGGC 57.053 40.909 0.00 0.00 0.00 4.85
2833 12514 8.286800 TGTTTAATCTGAATTTAACGTGACTGG 58.713 33.333 0.00 0.00 37.26 4.00
2849 12543 8.129161 TGATTGCTTTGTGTTTGTTTAATCTG 57.871 30.769 0.00 0.00 0.00 2.90
2859 12553 9.539825 TTTGTTGTATATGATTGCTTTGTGTTT 57.460 25.926 0.00 0.00 0.00 2.83
2860 12554 9.539825 TTTTGTTGTATATGATTGCTTTGTGTT 57.460 25.926 0.00 0.00 0.00 3.32
2971 12665 0.324738 TGGTGTTTTTGGGCCTCACA 60.325 50.000 4.53 0.00 0.00 3.58
3015 12709 1.472376 GGCTGAAGATGCTCTTAGCGT 60.472 52.381 0.00 0.00 46.26 5.07
3016 12710 1.216122 GGCTGAAGATGCTCTTAGCG 58.784 55.000 13.88 0.00 46.26 4.26
3042 12736 2.319844 GATTTTTATGCCTCCTGGGGG 58.680 52.381 8.74 8.74 35.12 5.40
3086 12781 2.931068 GCCCCAAGAGCCGGTTTTG 61.931 63.158 1.90 5.53 0.00 2.44
3140 12846 4.150994 GCCGAATAATGGGCCGAA 57.849 55.556 0.00 0.00 44.10 4.30
3145 12851 2.697751 TGAAAATGGGCCGAATAATGGG 59.302 45.455 0.00 0.00 0.00 4.00
3149 12855 3.546724 TCGATGAAAATGGGCCGAATAA 58.453 40.909 0.00 0.00 0.00 1.40
3151 12857 2.051334 TCGATGAAAATGGGCCGAAT 57.949 45.000 0.00 0.00 0.00 3.34
3161 12867 9.292846 CAATATCAAGCAATTCTTCGATGAAAA 57.707 29.630 16.60 0.00 31.27 2.29
3166 12872 5.561532 CGCCAATATCAAGCAATTCTTCGAT 60.562 40.000 0.00 0.00 31.27 3.59
3167 12873 4.260743 CGCCAATATCAAGCAATTCTTCGA 60.261 41.667 0.00 0.00 31.27 3.71
3172 12878 2.046313 CGCGCCAATATCAAGCAATTC 58.954 47.619 0.00 0.00 0.00 2.17
3175 12881 1.090728 TTCGCGCCAATATCAAGCAA 58.909 45.000 0.00 0.00 0.00 3.91
3176 12882 1.264020 GATTCGCGCCAATATCAAGCA 59.736 47.619 0.00 0.00 0.00 3.91
3179 12885 0.865111 CCGATTCGCGCCAATATCAA 59.135 50.000 0.00 0.00 39.11 2.57
3180 12886 1.565156 GCCGATTCGCGCCAATATCA 61.565 55.000 0.00 0.00 39.11 2.15
3181 12887 1.132640 GCCGATTCGCGCCAATATC 59.867 57.895 0.00 0.00 39.11 1.63
3209 12915 2.963320 GAACACACCGAACCGCGT 60.963 61.111 4.92 0.00 38.67 6.01
3212 12918 0.944311 CTCTGGAACACACCGAACCG 60.944 60.000 0.00 0.00 0.00 4.44
3226 12932 8.946797 AAATATTTATGGAGAATTCCCTCTGG 57.053 34.615 0.65 0.00 43.33 3.86
3255 12964 5.164620 TCTGTGATGAACTATGAAGGCAA 57.835 39.130 0.00 0.00 0.00 4.52
3257 12966 6.500684 TTTTCTGTGATGAACTATGAAGGC 57.499 37.500 0.00 0.00 0.00 4.35
3337 13046 6.258507 TGGAATGACGTGTGATGAAATATGAG 59.741 38.462 0.00 0.00 0.00 2.90
3338 13047 6.112058 TGGAATGACGTGTGATGAAATATGA 58.888 36.000 0.00 0.00 0.00 2.15
3339 13048 6.362210 TGGAATGACGTGTGATGAAATATG 57.638 37.500 0.00 0.00 0.00 1.78
3340 13049 5.008019 GCTGGAATGACGTGTGATGAAATAT 59.992 40.000 0.00 0.00 0.00 1.28
3341 13050 4.332543 GCTGGAATGACGTGTGATGAAATA 59.667 41.667 0.00 0.00 0.00 1.40
3342 13051 3.127548 GCTGGAATGACGTGTGATGAAAT 59.872 43.478 0.00 0.00 0.00 2.17
3343 13052 2.483877 GCTGGAATGACGTGTGATGAAA 59.516 45.455 0.00 0.00 0.00 2.69
3347 13056 0.037326 ACGCTGGAATGACGTGTGAT 60.037 50.000 0.00 0.00 38.85 3.06
3357 13066 2.436646 CAAGGGCGACGCTGGAAT 60.437 61.111 20.77 0.00 0.00 3.01
3358 13067 3.589654 CTCAAGGGCGACGCTGGAA 62.590 63.158 20.77 1.21 0.00 3.53
3359 13068 4.069232 CTCAAGGGCGACGCTGGA 62.069 66.667 20.77 10.87 0.00 3.86
3386 13097 0.396435 AACACGATCTGGTGGAGCAA 59.604 50.000 5.83 0.00 42.23 3.91
3401 13112 2.206815 TGCATCAACAACTGCAACAC 57.793 45.000 0.00 0.00 44.87 3.32
3413 13124 1.475571 CGGGATCCACAGATGCATCAA 60.476 52.381 27.81 8.59 42.35 2.57
3421 13132 1.062886 AGGAGATTCGGGATCCACAGA 60.063 52.381 15.23 6.90 35.21 3.41
3422 13133 1.069823 CAGGAGATTCGGGATCCACAG 59.930 57.143 15.23 4.35 35.21 3.66
3428 13139 1.043116 TGCGTCAGGAGATTCGGGAT 61.043 55.000 0.00 0.00 0.00 3.85
3431 13142 2.732412 ATATGCGTCAGGAGATTCGG 57.268 50.000 0.00 0.00 0.00 4.30
3434 13145 3.389329 ACCTCAATATGCGTCAGGAGATT 59.611 43.478 0.00 0.00 29.61 2.40
3450 13161 0.178903 ACCTGGACTGCCTACCTCAA 60.179 55.000 0.00 0.00 34.31 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.