Multiple sequence alignment - TraesCS6B01G349500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6B01G349500 chr6B 100.000 3491 0 0 1 3491 614310734 614314224 0.000000e+00 6447.0
1 TraesCS6B01G349500 chr6B 97.958 2498 40 8 646 3137 614436692 614439184 0.000000e+00 4320.0
2 TraesCS6B01G349500 chr6B 97.160 2007 40 11 646 2646 614581755 614583750 0.000000e+00 3374.0
3 TraesCS6B01G349500 chr6B 89.747 1736 132 28 806 2517 636491421 636493134 0.000000e+00 2178.0
4 TraesCS6B01G349500 chr6B 92.847 1370 82 11 1150 2511 636585754 636584393 0.000000e+00 1973.0
5 TraesCS6B01G349500 chr6B 96.893 354 11 0 3135 3488 614463760 614464113 8.340000e-166 593.0
6 TraesCS6B01G349500 chr6B 83.062 307 27 11 806 1087 636586093 636585787 4.470000e-64 255.0
7 TraesCS6B01G349500 chr6A 95.445 1471 61 4 1178 2646 554824785 554826251 0.000000e+00 2340.0
8 TraesCS6B01G349500 chr6A 89.746 1814 141 28 904 2703 564910763 564908981 0.000000e+00 2278.0
9 TraesCS6B01G349500 chr6A 89.436 1827 137 31 889 2694 564974739 564976530 0.000000e+00 2254.0
10 TraesCS6B01G349500 chr6A 82.530 1162 103 38 1 1093 554823291 554824421 0.000000e+00 929.0
11 TraesCS6B01G349500 chr6A 89.744 78 8 0 806 883 564974626 564974703 2.220000e-17 100.0
12 TraesCS6B01G349500 chr6A 98.077 52 1 0 806 857 564910899 564910848 1.330000e-14 91.6
13 TraesCS6B01G349500 chr6D 94.765 1471 68 6 1178 2646 409347234 409348697 0.000000e+00 2281.0
14 TraesCS6B01G349500 chr6D 91.156 1617 105 23 899 2503 422190634 422192224 0.000000e+00 2159.0
15 TraesCS6B01G349500 chr6D 89.364 1636 133 25 899 2520 422205544 422203936 0.000000e+00 2019.0
16 TraesCS6B01G349500 chr6D 88.743 1146 56 20 1 1093 409345758 409346883 0.000000e+00 1334.0
17 TraesCS6B01G349500 chr6D 83.221 149 21 4 2557 2703 422203933 422203787 2.190000e-27 134.0
18 TraesCS6B01G349500 chr6D 87.850 107 12 1 223 329 422190081 422190186 1.320000e-24 124.0
19 TraesCS6B01G349500 chr6D 91.026 78 6 1 223 300 422206260 422206184 1.710000e-18 104.0
20 TraesCS6B01G349500 chr6D 87.179 78 10 0 806 883 422190511 422190588 4.800000e-14 89.8
21 TraesCS6B01G349500 chr6D 92.982 57 3 1 267 323 422206197 422206142 8.030000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6B01G349500 chr6B 614310734 614314224 3490 False 6447.000000 6447 100.000000 1 3491 1 chr6B.!!$F1 3490
1 TraesCS6B01G349500 chr6B 614436692 614439184 2492 False 4320.000000 4320 97.958000 646 3137 1 chr6B.!!$F2 2491
2 TraesCS6B01G349500 chr6B 614581755 614583750 1995 False 3374.000000 3374 97.160000 646 2646 1 chr6B.!!$F4 2000
3 TraesCS6B01G349500 chr6B 636491421 636493134 1713 False 2178.000000 2178 89.747000 806 2517 1 chr6B.!!$F5 1711
4 TraesCS6B01G349500 chr6B 636584393 636586093 1700 True 1114.000000 1973 87.954500 806 2511 2 chr6B.!!$R1 1705
5 TraesCS6B01G349500 chr6A 554823291 554826251 2960 False 1634.500000 2340 88.987500 1 2646 2 chr6A.!!$F1 2645
6 TraesCS6B01G349500 chr6A 564908981 564910899 1918 True 1184.800000 2278 93.911500 806 2703 2 chr6A.!!$R1 1897
7 TraesCS6B01G349500 chr6A 564974626 564976530 1904 False 1177.000000 2254 89.590000 806 2694 2 chr6A.!!$F2 1888
8 TraesCS6B01G349500 chr6D 409345758 409348697 2939 False 1807.500000 2281 91.754000 1 2646 2 chr6D.!!$F1 2645
9 TraesCS6B01G349500 chr6D 422190081 422192224 2143 False 790.933333 2159 88.728333 223 2503 3 chr6D.!!$F2 2280
10 TraesCS6B01G349500 chr6D 422203787 422206260 2473 True 584.850000 2019 89.148250 223 2703 4 chr6D.!!$R1 2480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 988 1.001641 GCTGGCTCCATCACTTGGT 60.002 57.895 0.0 0.0 46.52 3.67 F
2144 2719 2.099405 TGCATCGTGAGTCATCCTACA 58.901 47.619 0.0 0.0 0.00 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2265 2854 1.867865 CGATCGATCTCGTCCTTCAGA 59.132 52.381 22.43 0.0 40.80 3.27 R
3390 3986 0.032952 TGTTCGTCTAGCGCCTTGTT 59.967 50.000 2.29 0.0 41.07 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.873129 ATAGCGTGCGCCTCACCG 62.873 66.667 13.21 0.03 42.69 4.94
77 78 3.536956 TCCGTTTGTTCTGTTGAGTCT 57.463 42.857 0.00 0.00 0.00 3.24
127 128 1.009829 CTCTGCCCAGCGTTTATCAC 58.990 55.000 0.00 0.00 0.00 3.06
194 206 1.135603 TGGTACGGAAATGACGTCGAG 60.136 52.381 11.62 0.91 44.37 4.04
210 222 1.152830 GAGGAGTTGCAACCCCCAA 59.847 57.895 29.21 0.00 0.00 4.12
211 223 1.152546 AGGAGTTGCAACCCCCAAC 60.153 57.895 29.21 14.73 42.11 3.77
239 251 7.944554 GGAATTCCTTGGGATGAACAATCTATA 59.055 37.037 17.73 0.00 35.43 1.31
243 255 9.713684 TTCCTTGGGATGAACAATCTATATTTT 57.286 29.630 0.00 0.00 35.43 1.82
245 257 9.359653 CCTTGGGATGAACAATCTATATTTTCT 57.640 33.333 0.00 0.00 35.43 2.52
323 373 9.929180 CTCGGATATATGTTTATCTCTTTGGAA 57.071 33.333 0.00 0.00 0.00 3.53
379 474 4.160439 TCCAGTTTTATCTGCATCGAGAGT 59.840 41.667 0.00 0.00 34.47 3.24
405 500 2.106511 CCACATCCGGGTTATTCAGGAT 59.893 50.000 0.00 0.00 43.66 3.24
408 503 4.997395 CACATCCGGGTTATTCAGGATAAG 59.003 45.833 0.00 0.00 41.17 1.73
409 504 4.905456 ACATCCGGGTTATTCAGGATAAGA 59.095 41.667 0.00 0.00 41.17 2.10
410 507 5.368523 ACATCCGGGTTATTCAGGATAAGAA 59.631 40.000 0.00 0.00 41.17 2.52
411 508 5.961398 TCCGGGTTATTCAGGATAAGAAA 57.039 39.130 0.00 0.00 31.01 2.52
412 509 6.509523 TCCGGGTTATTCAGGATAAGAAAT 57.490 37.500 0.00 0.00 31.01 2.17
437 535 3.197766 AGAATGTGCTGACCGGATTTCTA 59.802 43.478 9.46 0.00 0.00 2.10
439 537 3.179443 TGTGCTGACCGGATTTCTATC 57.821 47.619 9.46 0.00 0.00 2.08
468 568 1.003118 AGGAATGCGCAAGTAACCTCA 59.997 47.619 17.11 0.00 38.03 3.86
521 622 3.181520 CGCTGATCTTTTACGAAGGGTTG 60.182 47.826 0.00 0.00 0.00 3.77
621 738 2.364970 TGGTTTCCATGTTCTTGCCAAG 59.635 45.455 0.00 0.00 0.00 3.61
626 743 2.627699 TCCATGTTCTTGCCAAGTTTCC 59.372 45.455 4.04 0.00 0.00 3.13
639 765 2.271944 AGTTTCCTGGCTTGTACACC 57.728 50.000 0.00 0.00 0.00 4.16
666 792 5.880332 TGCAGTAGATGAAGATTTGTAACCC 59.120 40.000 0.00 0.00 0.00 4.11
673 799 2.215942 AGATTTGTAACCCCAGCACC 57.784 50.000 0.00 0.00 0.00 5.01
709 878 3.117491 TGCTCAAAGTTCTGTCCTCAG 57.883 47.619 0.00 0.00 42.54 3.35
794 988 1.001641 GCTGGCTCCATCACTTGGT 60.002 57.895 0.00 0.00 46.52 3.67
2144 2719 2.099405 TGCATCGTGAGTCATCCTACA 58.901 47.619 0.00 0.00 0.00 2.74
2265 2854 2.418746 CGATCATTTCTTCGACTGGGGT 60.419 50.000 0.00 0.00 37.55 4.95
2398 2987 1.361668 CGGCAAGGTCATCGTCAAGG 61.362 60.000 0.00 0.00 0.00 3.61
3109 3705 0.942962 CCGCTCCTCTGCATTTGATC 59.057 55.000 0.00 0.00 0.00 2.92
3114 3710 3.065095 GCTCCTCTGCATTTGATCTGTTC 59.935 47.826 0.00 0.00 0.00 3.18
3137 3733 1.383799 CATCCCACCACACCCACAT 59.616 57.895 0.00 0.00 0.00 3.21
3138 3734 0.680921 CATCCCACCACACCCACATC 60.681 60.000 0.00 0.00 0.00 3.06
3139 3735 1.139498 ATCCCACCACACCCACATCA 61.139 55.000 0.00 0.00 0.00 3.07
3140 3736 1.303561 CCCACCACACCCACATCAG 60.304 63.158 0.00 0.00 0.00 2.90
3141 3737 1.303561 CCACCACACCCACATCAGG 60.304 63.158 0.00 0.00 0.00 3.86
3142 3738 1.760527 CACCACACCCACATCAGGA 59.239 57.895 0.00 0.00 0.00 3.86
3143 3739 0.606401 CACCACACCCACATCAGGAC 60.606 60.000 0.00 0.00 0.00 3.85
3144 3740 1.059584 ACCACACCCACATCAGGACA 61.060 55.000 0.00 0.00 0.00 4.02
3145 3741 0.110295 CCACACCCACATCAGGACAA 59.890 55.000 0.00 0.00 0.00 3.18
3146 3742 1.478471 CCACACCCACATCAGGACAAA 60.478 52.381 0.00 0.00 0.00 2.83
3147 3743 1.881973 CACACCCACATCAGGACAAAG 59.118 52.381 0.00 0.00 0.00 2.77
3148 3744 1.774254 ACACCCACATCAGGACAAAGA 59.226 47.619 0.00 0.00 0.00 2.52
3149 3745 2.224621 ACACCCACATCAGGACAAAGAG 60.225 50.000 0.00 0.00 0.00 2.85
3150 3746 1.271597 ACCCACATCAGGACAAAGAGC 60.272 52.381 0.00 0.00 0.00 4.09
3151 3747 1.457346 CCACATCAGGACAAAGAGCC 58.543 55.000 0.00 0.00 0.00 4.70
3152 3748 1.457346 CACATCAGGACAAAGAGCCC 58.543 55.000 0.00 0.00 0.00 5.19
3153 3749 1.004044 CACATCAGGACAAAGAGCCCT 59.996 52.381 0.00 0.00 0.00 5.19
3154 3750 1.280421 ACATCAGGACAAAGAGCCCTC 59.720 52.381 0.00 0.00 0.00 4.30
3155 3751 1.280133 CATCAGGACAAAGAGCCCTCA 59.720 52.381 0.00 0.00 0.00 3.86
3156 3752 0.979665 TCAGGACAAAGAGCCCTCAG 59.020 55.000 0.00 0.00 0.00 3.35
3157 3753 0.676151 CAGGACAAAGAGCCCTCAGC 60.676 60.000 0.00 0.00 44.25 4.26
3167 3763 4.729918 CCCTCAGCTGGGTGGCAC 62.730 72.222 13.79 9.70 42.25 5.01
3168 3764 3.644606 CCTCAGCTGGGTGGCACT 61.645 66.667 18.45 0.00 34.17 4.40
3169 3765 2.293318 CCTCAGCTGGGTGGCACTA 61.293 63.158 18.45 6.28 34.17 2.74
3170 3766 1.630126 CCTCAGCTGGGTGGCACTAT 61.630 60.000 18.45 0.00 34.17 2.12
3171 3767 0.179062 CTCAGCTGGGTGGCACTATC 60.179 60.000 18.45 8.27 34.17 2.08
3172 3768 0.909133 TCAGCTGGGTGGCACTATCA 60.909 55.000 18.45 12.29 34.17 2.15
3173 3769 0.035152 CAGCTGGGTGGCACTATCAA 60.035 55.000 18.45 0.00 34.17 2.57
3174 3770 0.035056 AGCTGGGTGGCACTATCAAC 60.035 55.000 18.45 9.11 34.17 3.18
3175 3771 1.032114 GCTGGGTGGCACTATCAACC 61.032 60.000 18.45 9.46 42.13 3.77
3176 3772 0.620556 CTGGGTGGCACTATCAACCT 59.379 55.000 18.45 0.00 42.28 3.50
3177 3773 1.004745 CTGGGTGGCACTATCAACCTT 59.995 52.381 18.45 0.00 42.28 3.50
3178 3774 1.004277 TGGGTGGCACTATCAACCTTC 59.996 52.381 18.45 0.00 42.28 3.46
3179 3775 1.682087 GGGTGGCACTATCAACCTTCC 60.682 57.143 18.45 1.87 38.86 3.46
3180 3776 1.004277 GGTGGCACTATCAACCTTCCA 59.996 52.381 18.45 0.00 0.00 3.53
3181 3777 2.084546 GTGGCACTATCAACCTTCCAC 58.915 52.381 11.13 0.00 36.20 4.02
3182 3778 1.702401 TGGCACTATCAACCTTCCACA 59.298 47.619 0.00 0.00 0.00 4.17
3183 3779 2.107378 TGGCACTATCAACCTTCCACAA 59.893 45.455 0.00 0.00 0.00 3.33
3184 3780 3.245229 TGGCACTATCAACCTTCCACAAT 60.245 43.478 0.00 0.00 0.00 2.71
3185 3781 3.763897 GGCACTATCAACCTTCCACAATT 59.236 43.478 0.00 0.00 0.00 2.32
3186 3782 4.142381 GGCACTATCAACCTTCCACAATTC 60.142 45.833 0.00 0.00 0.00 2.17
3187 3783 4.458989 GCACTATCAACCTTCCACAATTCA 59.541 41.667 0.00 0.00 0.00 2.57
3188 3784 5.392380 GCACTATCAACCTTCCACAATTCAG 60.392 44.000 0.00 0.00 0.00 3.02
3189 3785 5.707298 CACTATCAACCTTCCACAATTCAGT 59.293 40.000 0.00 0.00 0.00 3.41
3190 3786 6.878923 CACTATCAACCTTCCACAATTCAGTA 59.121 38.462 0.00 0.00 0.00 2.74
3191 3787 7.390440 CACTATCAACCTTCCACAATTCAGTAA 59.610 37.037 0.00 0.00 0.00 2.24
3192 3788 6.824305 ATCAACCTTCCACAATTCAGTAAG 57.176 37.500 0.00 0.00 0.00 2.34
3193 3789 4.518970 TCAACCTTCCACAATTCAGTAAGC 59.481 41.667 0.00 0.00 0.00 3.09
3194 3790 4.098914 ACCTTCCACAATTCAGTAAGCA 57.901 40.909 0.00 0.00 0.00 3.91
3195 3791 4.666512 ACCTTCCACAATTCAGTAAGCAT 58.333 39.130 0.00 0.00 0.00 3.79
3196 3792 4.702131 ACCTTCCACAATTCAGTAAGCATC 59.298 41.667 0.00 0.00 0.00 3.91
3197 3793 4.096984 CCTTCCACAATTCAGTAAGCATCC 59.903 45.833 0.00 0.00 0.00 3.51
3198 3794 3.620488 TCCACAATTCAGTAAGCATCCC 58.380 45.455 0.00 0.00 0.00 3.85
3199 3795 3.010027 TCCACAATTCAGTAAGCATCCCA 59.990 43.478 0.00 0.00 0.00 4.37
3200 3796 3.956199 CCACAATTCAGTAAGCATCCCAT 59.044 43.478 0.00 0.00 0.00 4.00
3201 3797 4.202080 CCACAATTCAGTAAGCATCCCATG 60.202 45.833 0.00 0.00 0.00 3.66
3202 3798 4.400251 CACAATTCAGTAAGCATCCCATGT 59.600 41.667 0.00 0.00 0.00 3.21
3203 3799 4.400251 ACAATTCAGTAAGCATCCCATGTG 59.600 41.667 0.00 0.00 0.00 3.21
3204 3800 2.042686 TCAGTAAGCATCCCATGTGC 57.957 50.000 0.00 0.00 42.81 4.57
3205 3801 1.281577 TCAGTAAGCATCCCATGTGCA 59.718 47.619 9.21 0.00 44.87 4.57
3206 3802 1.674441 CAGTAAGCATCCCATGTGCAG 59.326 52.381 9.21 0.00 44.87 4.41
3207 3803 1.561076 AGTAAGCATCCCATGTGCAGA 59.439 47.619 9.21 0.00 44.87 4.26
3208 3804 2.025981 AGTAAGCATCCCATGTGCAGAA 60.026 45.455 9.21 0.00 44.87 3.02
3209 3805 2.154567 AAGCATCCCATGTGCAGAAT 57.845 45.000 9.21 0.00 44.87 2.40
3210 3806 2.154567 AGCATCCCATGTGCAGAATT 57.845 45.000 9.21 0.00 44.87 2.17
3211 3807 1.754803 AGCATCCCATGTGCAGAATTG 59.245 47.619 9.21 0.00 44.87 2.32
3212 3808 1.479323 GCATCCCATGTGCAGAATTGT 59.521 47.619 2.12 0.00 42.08 2.71
3213 3809 2.737359 GCATCCCATGTGCAGAATTGTG 60.737 50.000 0.00 0.00 42.08 3.33
3214 3810 0.889994 TCCCATGTGCAGAATTGTGC 59.110 50.000 20.04 20.04 44.27 4.57
3215 3811 0.892755 CCCATGTGCAGAATTGTGCT 59.107 50.000 25.85 5.60 44.32 4.40
3216 3812 1.403647 CCCATGTGCAGAATTGTGCTG 60.404 52.381 25.85 16.57 44.32 4.41
3230 3826 2.653115 GCTGCAGCAAGGTTTCCC 59.347 61.111 33.36 0.00 41.59 3.97
3231 3827 2.956987 CTGCAGCAAGGTTTCCCG 59.043 61.111 0.00 0.00 35.12 5.14
3232 3828 1.600636 CTGCAGCAAGGTTTCCCGA 60.601 57.895 0.00 0.00 35.12 5.14
3233 3829 1.152860 TGCAGCAAGGTTTCCCGAA 60.153 52.632 0.00 0.00 35.12 4.30
3234 3830 1.172180 TGCAGCAAGGTTTCCCGAAG 61.172 55.000 0.00 0.00 35.12 3.79
3235 3831 0.889186 GCAGCAAGGTTTCCCGAAGA 60.889 55.000 0.00 0.00 35.12 2.87
3236 3832 0.875059 CAGCAAGGTTTCCCGAAGAC 59.125 55.000 0.00 0.00 35.12 3.01
3237 3833 0.250770 AGCAAGGTTTCCCGAAGACC 60.251 55.000 0.00 0.00 35.12 3.85
3238 3834 0.536460 GCAAGGTTTCCCGAAGACCA 60.536 55.000 9.79 0.00 35.89 4.02
3239 3835 1.235724 CAAGGTTTCCCGAAGACCAC 58.764 55.000 9.79 0.00 35.89 4.16
3240 3836 0.109913 AAGGTTTCCCGAAGACCACC 59.890 55.000 9.79 1.42 35.89 4.61
3241 3837 1.303074 GGTTTCCCGAAGACCACCC 60.303 63.158 0.00 0.00 33.61 4.61
3242 3838 1.452801 GTTTCCCGAAGACCACCCA 59.547 57.895 0.00 0.00 0.00 4.51
3243 3839 0.179012 GTTTCCCGAAGACCACCCAA 60.179 55.000 0.00 0.00 0.00 4.12
3244 3840 0.179012 TTTCCCGAAGACCACCCAAC 60.179 55.000 0.00 0.00 0.00 3.77
3245 3841 1.057851 TTCCCGAAGACCACCCAACT 61.058 55.000 0.00 0.00 0.00 3.16
3246 3842 1.057851 TCCCGAAGACCACCCAACTT 61.058 55.000 0.00 0.00 0.00 2.66
3247 3843 0.179001 CCCGAAGACCACCCAACTTT 60.179 55.000 0.00 0.00 0.00 2.66
3248 3844 1.072648 CCCGAAGACCACCCAACTTTA 59.927 52.381 0.00 0.00 0.00 1.85
3249 3845 2.423577 CCGAAGACCACCCAACTTTAG 58.576 52.381 0.00 0.00 0.00 1.85
3250 3846 1.804748 CGAAGACCACCCAACTTTAGC 59.195 52.381 0.00 0.00 0.00 3.09
3251 3847 2.160205 GAAGACCACCCAACTTTAGCC 58.840 52.381 0.00 0.00 0.00 3.93
3252 3848 1.446016 AGACCACCCAACTTTAGCCT 58.554 50.000 0.00 0.00 0.00 4.58
3253 3849 1.073923 AGACCACCCAACTTTAGCCTG 59.926 52.381 0.00 0.00 0.00 4.85
3254 3850 0.539669 ACCACCCAACTTTAGCCTGC 60.540 55.000 0.00 0.00 0.00 4.85
3255 3851 0.251341 CCACCCAACTTTAGCCTGCT 60.251 55.000 0.00 0.00 0.00 4.24
3256 3852 1.168714 CACCCAACTTTAGCCTGCTC 58.831 55.000 0.00 0.00 0.00 4.26
3257 3853 0.038310 ACCCAACTTTAGCCTGCTCC 59.962 55.000 0.00 0.00 0.00 4.70
3258 3854 0.038166 CCCAACTTTAGCCTGCTCCA 59.962 55.000 0.00 0.00 0.00 3.86
3259 3855 1.547675 CCCAACTTTAGCCTGCTCCAA 60.548 52.381 0.00 0.00 0.00 3.53
3260 3856 1.541588 CCAACTTTAGCCTGCTCCAAC 59.458 52.381 0.00 0.00 0.00 3.77
3261 3857 2.229792 CAACTTTAGCCTGCTCCAACA 58.770 47.619 0.00 0.00 0.00 3.33
3262 3858 1.897560 ACTTTAGCCTGCTCCAACAC 58.102 50.000 0.00 0.00 0.00 3.32
3263 3859 1.421646 ACTTTAGCCTGCTCCAACACT 59.578 47.619 0.00 0.00 0.00 3.55
3264 3860 2.079925 CTTTAGCCTGCTCCAACACTC 58.920 52.381 0.00 0.00 0.00 3.51
3265 3861 1.352083 TTAGCCTGCTCCAACACTCT 58.648 50.000 0.00 0.00 0.00 3.24
3266 3862 1.352083 TAGCCTGCTCCAACACTCTT 58.648 50.000 0.00 0.00 0.00 2.85
3267 3863 0.475906 AGCCTGCTCCAACACTCTTT 59.524 50.000 0.00 0.00 0.00 2.52
3268 3864 0.877743 GCCTGCTCCAACACTCTTTC 59.122 55.000 0.00 0.00 0.00 2.62
3269 3865 1.815408 GCCTGCTCCAACACTCTTTCA 60.815 52.381 0.00 0.00 0.00 2.69
3270 3866 1.876156 CCTGCTCCAACACTCTTTCAC 59.124 52.381 0.00 0.00 0.00 3.18
3271 3867 1.876156 CTGCTCCAACACTCTTTCACC 59.124 52.381 0.00 0.00 0.00 4.02
3272 3868 1.211703 TGCTCCAACACTCTTTCACCA 59.788 47.619 0.00 0.00 0.00 4.17
3273 3869 2.158623 TGCTCCAACACTCTTTCACCAT 60.159 45.455 0.00 0.00 0.00 3.55
3274 3870 2.485814 GCTCCAACACTCTTTCACCATC 59.514 50.000 0.00 0.00 0.00 3.51
3275 3871 3.808618 GCTCCAACACTCTTTCACCATCT 60.809 47.826 0.00 0.00 0.00 2.90
3276 3872 4.392940 CTCCAACACTCTTTCACCATCTT 58.607 43.478 0.00 0.00 0.00 2.40
3277 3873 5.551233 CTCCAACACTCTTTCACCATCTTA 58.449 41.667 0.00 0.00 0.00 2.10
3278 3874 5.305585 TCCAACACTCTTTCACCATCTTAC 58.694 41.667 0.00 0.00 0.00 2.34
3279 3875 5.063204 CCAACACTCTTTCACCATCTTACA 58.937 41.667 0.00 0.00 0.00 2.41
3280 3876 5.707298 CCAACACTCTTTCACCATCTTACAT 59.293 40.000 0.00 0.00 0.00 2.29
3281 3877 6.207417 CCAACACTCTTTCACCATCTTACATT 59.793 38.462 0.00 0.00 0.00 2.71
3282 3878 7.255590 CCAACACTCTTTCACCATCTTACATTT 60.256 37.037 0.00 0.00 0.00 2.32
3283 3879 7.440523 ACACTCTTTCACCATCTTACATTTC 57.559 36.000 0.00 0.00 0.00 2.17
3284 3880 6.998074 ACACTCTTTCACCATCTTACATTTCA 59.002 34.615 0.00 0.00 0.00 2.69
3285 3881 7.173907 ACACTCTTTCACCATCTTACATTTCAG 59.826 37.037 0.00 0.00 0.00 3.02
3286 3882 6.656693 ACTCTTTCACCATCTTACATTTCAGG 59.343 38.462 0.00 0.00 0.00 3.86
3287 3883 6.778821 TCTTTCACCATCTTACATTTCAGGA 58.221 36.000 0.00 0.00 0.00 3.86
3288 3884 7.230747 TCTTTCACCATCTTACATTTCAGGAA 58.769 34.615 0.00 0.00 0.00 3.36
3289 3885 7.391554 TCTTTCACCATCTTACATTTCAGGAAG 59.608 37.037 0.00 0.00 0.00 3.46
3290 3886 6.373005 TCACCATCTTACATTTCAGGAAGA 57.627 37.500 0.00 0.00 32.73 2.87
3291 3887 6.962182 TCACCATCTTACATTTCAGGAAGAT 58.038 36.000 0.00 0.00 38.81 2.40
3295 3891 7.024340 CATCTTACATTTCAGGAAGATGTGG 57.976 40.000 16.91 0.00 45.28 4.17
3296 3892 4.943705 TCTTACATTTCAGGAAGATGTGGC 59.056 41.667 14.47 0.00 35.72 5.01
3297 3893 2.450476 ACATTTCAGGAAGATGTGGCC 58.550 47.619 0.00 0.00 33.08 5.36
3298 3894 1.402968 CATTTCAGGAAGATGTGGCCG 59.597 52.381 0.00 0.00 0.00 6.13
3299 3895 0.960364 TTTCAGGAAGATGTGGCCGC 60.960 55.000 10.11 10.11 0.00 6.53
3300 3896 2.819984 TTCAGGAAGATGTGGCCGCC 62.820 60.000 15.15 1.04 0.00 6.13
3301 3897 4.473520 AGGAAGATGTGGCCGCCG 62.474 66.667 15.15 0.00 0.00 6.46
3302 3898 4.778143 GGAAGATGTGGCCGCCGT 62.778 66.667 15.15 1.73 0.00 5.68
3303 3899 3.195698 GAAGATGTGGCCGCCGTC 61.196 66.667 15.15 12.15 0.00 4.79
3304 3900 4.778143 AAGATGTGGCCGCCGTCC 62.778 66.667 15.15 0.00 0.00 4.79
3309 3905 4.778143 GTGGCCGCCGTCCTCATT 62.778 66.667 4.45 0.00 0.00 2.57
3310 3906 4.028490 TGGCCGCCGTCCTCATTT 62.028 61.111 4.58 0.00 0.00 2.32
3311 3907 2.188469 GGCCGCCGTCCTCATTTA 59.812 61.111 0.00 0.00 0.00 1.40
3312 3908 1.450669 GGCCGCCGTCCTCATTTAA 60.451 57.895 0.00 0.00 0.00 1.52
3313 3909 1.712018 GGCCGCCGTCCTCATTTAAC 61.712 60.000 0.00 0.00 0.00 2.01
3314 3910 1.712018 GCCGCCGTCCTCATTTAACC 61.712 60.000 0.00 0.00 0.00 2.85
3315 3911 1.426041 CCGCCGTCCTCATTTAACCG 61.426 60.000 0.00 0.00 0.00 4.44
3316 3912 0.458889 CGCCGTCCTCATTTAACCGA 60.459 55.000 0.00 0.00 0.00 4.69
3317 3913 1.287425 GCCGTCCTCATTTAACCGAG 58.713 55.000 0.00 0.00 0.00 4.63
3318 3914 1.405121 GCCGTCCTCATTTAACCGAGT 60.405 52.381 0.00 0.00 0.00 4.18
3319 3915 2.268298 CCGTCCTCATTTAACCGAGTG 58.732 52.381 0.00 0.00 0.00 3.51
3320 3916 1.659098 CGTCCTCATTTAACCGAGTGC 59.341 52.381 0.00 0.00 0.00 4.40
3321 3917 2.695359 GTCCTCATTTAACCGAGTGCA 58.305 47.619 0.00 0.00 0.00 4.57
3322 3918 2.415512 GTCCTCATTTAACCGAGTGCAC 59.584 50.000 9.40 9.40 0.00 4.57
3323 3919 2.037902 TCCTCATTTAACCGAGTGCACA 59.962 45.455 21.04 0.00 0.00 4.57
3324 3920 2.159627 CCTCATTTAACCGAGTGCACAC 59.840 50.000 21.04 12.49 0.00 3.82
3325 3921 3.067106 CTCATTTAACCGAGTGCACACT 58.933 45.455 21.04 2.22 45.84 3.55
3326 3922 2.805671 TCATTTAACCGAGTGCACACTG 59.194 45.455 21.04 12.04 42.66 3.66
3327 3923 1.588674 TTTAACCGAGTGCACACTGG 58.411 50.000 21.04 18.90 42.66 4.00
3331 3927 3.046087 CGAGTGCACACTGGGCAG 61.046 66.667 21.04 0.00 42.85 4.85
3332 3928 2.670934 GAGTGCACACTGGGCAGG 60.671 66.667 21.04 0.00 42.85 4.85
3333 3929 3.482232 GAGTGCACACTGGGCAGGT 62.482 63.158 21.04 0.00 42.85 4.00
3334 3930 2.980233 GTGCACACTGGGCAGGTC 60.980 66.667 13.17 0.00 42.85 3.85
3335 3931 3.487626 TGCACACTGGGCAGGTCA 61.488 61.111 0.41 0.00 36.11 4.02
3336 3932 2.034687 GCACACTGGGCAGGTCAT 59.965 61.111 0.00 0.00 0.00 3.06
3337 3933 2.338015 GCACACTGGGCAGGTCATG 61.338 63.158 0.00 0.00 0.00 3.07
3338 3934 1.073722 CACACTGGGCAGGTCATGT 59.926 57.895 0.00 0.00 0.00 3.21
3339 3935 0.957395 CACACTGGGCAGGTCATGTC 60.957 60.000 0.00 0.00 0.00 3.06
3346 3942 1.106285 GGCAGGTCATGTCCAATTCC 58.894 55.000 11.70 3.00 0.00 3.01
3347 3943 1.616725 GGCAGGTCATGTCCAATTCCA 60.617 52.381 11.70 0.00 0.00 3.53
3348 3944 1.474077 GCAGGTCATGTCCAATTCCAC 59.526 52.381 11.70 0.00 0.00 4.02
3349 3945 1.739466 CAGGTCATGTCCAATTCCACG 59.261 52.381 11.70 0.00 0.00 4.94
3350 3946 0.451783 GGTCATGTCCAATTCCACGC 59.548 55.000 3.91 0.00 0.00 5.34
3351 3947 0.451783 GTCATGTCCAATTCCACGCC 59.548 55.000 0.00 0.00 0.00 5.68
3352 3948 0.037447 TCATGTCCAATTCCACGCCA 59.963 50.000 0.00 0.00 0.00 5.69
3353 3949 0.887247 CATGTCCAATTCCACGCCAA 59.113 50.000 0.00 0.00 0.00 4.52
3354 3950 0.887933 ATGTCCAATTCCACGCCAAC 59.112 50.000 0.00 0.00 0.00 3.77
3355 3951 1.175983 TGTCCAATTCCACGCCAACC 61.176 55.000 0.00 0.00 0.00 3.77
3356 3952 0.893727 GTCCAATTCCACGCCAACCT 60.894 55.000 0.00 0.00 0.00 3.50
3357 3953 0.178975 TCCAATTCCACGCCAACCTT 60.179 50.000 0.00 0.00 0.00 3.50
3358 3954 0.678950 CCAATTCCACGCCAACCTTT 59.321 50.000 0.00 0.00 0.00 3.11
3359 3955 1.605202 CCAATTCCACGCCAACCTTTG 60.605 52.381 0.00 0.00 0.00 2.77
3360 3956 1.339610 CAATTCCACGCCAACCTTTGA 59.660 47.619 0.00 0.00 0.00 2.69
3361 3957 1.698506 ATTCCACGCCAACCTTTGAA 58.301 45.000 0.00 0.00 0.00 2.69
3362 3958 1.698506 TTCCACGCCAACCTTTGAAT 58.301 45.000 0.00 0.00 0.00 2.57
3363 3959 1.243902 TCCACGCCAACCTTTGAATC 58.756 50.000 0.00 0.00 0.00 2.52
3364 3960 1.202879 TCCACGCCAACCTTTGAATCT 60.203 47.619 0.00 0.00 0.00 2.40
3365 3961 1.613437 CCACGCCAACCTTTGAATCTT 59.387 47.619 0.00 0.00 0.00 2.40
3366 3962 2.351738 CCACGCCAACCTTTGAATCTTC 60.352 50.000 0.00 0.00 0.00 2.87
3367 3963 2.293122 CACGCCAACCTTTGAATCTTCA 59.707 45.455 0.00 0.00 34.92 3.02
3368 3964 3.057315 CACGCCAACCTTTGAATCTTCAT 60.057 43.478 0.00 0.00 37.00 2.57
3369 3965 3.573967 ACGCCAACCTTTGAATCTTCATT 59.426 39.130 0.00 0.00 37.00 2.57
3370 3966 4.168760 CGCCAACCTTTGAATCTTCATTC 58.831 43.478 0.00 0.00 39.24 2.67
3371 3967 4.082571 CGCCAACCTTTGAATCTTCATTCT 60.083 41.667 0.00 0.00 39.49 2.40
3372 3968 5.166398 GCCAACCTTTGAATCTTCATTCTG 58.834 41.667 0.00 0.00 39.49 3.02
3373 3969 5.279156 GCCAACCTTTGAATCTTCATTCTGT 60.279 40.000 0.00 0.00 39.49 3.41
3374 3970 6.739565 GCCAACCTTTGAATCTTCATTCTGTT 60.740 38.462 0.00 0.00 39.49 3.16
3375 3971 7.212274 CCAACCTTTGAATCTTCATTCTGTTT 58.788 34.615 0.00 0.00 39.49 2.83
3376 3972 7.170320 CCAACCTTTGAATCTTCATTCTGTTTG 59.830 37.037 0.00 0.00 39.49 2.93
3377 3973 6.218746 ACCTTTGAATCTTCATTCTGTTTGC 58.781 36.000 0.00 0.00 39.49 3.68
3378 3974 5.636543 CCTTTGAATCTTCATTCTGTTTGCC 59.363 40.000 0.00 0.00 39.49 4.52
3379 3975 5.787953 TTGAATCTTCATTCTGTTTGCCA 57.212 34.783 0.00 0.00 39.49 4.92
3380 3976 5.787953 TGAATCTTCATTCTGTTTGCCAA 57.212 34.783 0.00 0.00 39.49 4.52
3381 3977 6.349243 TGAATCTTCATTCTGTTTGCCAAT 57.651 33.333 0.00 0.00 39.49 3.16
3382 3978 6.392354 TGAATCTTCATTCTGTTTGCCAATC 58.608 36.000 0.00 0.00 39.49 2.67
3383 3979 6.209986 TGAATCTTCATTCTGTTTGCCAATCT 59.790 34.615 0.00 0.00 39.49 2.40
3384 3980 5.381174 TCTTCATTCTGTTTGCCAATCTG 57.619 39.130 0.00 0.00 0.00 2.90
3385 3981 3.581024 TCATTCTGTTTGCCAATCTGC 57.419 42.857 0.00 0.00 0.00 4.26
3386 3982 3.159472 TCATTCTGTTTGCCAATCTGCT 58.841 40.909 0.00 0.00 0.00 4.24
3387 3983 3.057104 TCATTCTGTTTGCCAATCTGCTG 60.057 43.478 0.00 0.00 0.00 4.41
3388 3984 1.985473 TCTGTTTGCCAATCTGCTGT 58.015 45.000 0.00 0.00 0.00 4.40
3389 3985 1.610038 TCTGTTTGCCAATCTGCTGTG 59.390 47.619 0.00 0.00 0.00 3.66
3390 3986 1.610038 CTGTTTGCCAATCTGCTGTGA 59.390 47.619 0.00 0.00 0.00 3.58
3391 3987 2.030371 TGTTTGCCAATCTGCTGTGAA 58.970 42.857 0.00 0.00 0.00 3.18
3392 3988 2.223782 TGTTTGCCAATCTGCTGTGAAC 60.224 45.455 0.00 0.00 0.00 3.18
3393 3989 1.689984 TTGCCAATCTGCTGTGAACA 58.310 45.000 0.00 0.00 0.00 3.18
3394 3990 1.689984 TGCCAATCTGCTGTGAACAA 58.310 45.000 0.00 0.00 0.00 2.83
3395 3991 1.610038 TGCCAATCTGCTGTGAACAAG 59.390 47.619 0.00 0.00 0.00 3.16
3396 3992 1.068055 GCCAATCTGCTGTGAACAAGG 60.068 52.381 0.00 0.00 0.00 3.61
3397 3993 1.068055 CCAATCTGCTGTGAACAAGGC 60.068 52.381 0.00 0.00 0.00 4.35
3398 3994 0.877071 AATCTGCTGTGAACAAGGCG 59.123 50.000 0.00 0.00 0.00 5.52
3399 3995 1.580845 ATCTGCTGTGAACAAGGCGC 61.581 55.000 0.00 0.00 0.00 6.53
3400 3996 2.203195 TGCTGTGAACAAGGCGCT 60.203 55.556 7.64 0.00 0.00 5.92
3401 3997 0.950555 CTGCTGTGAACAAGGCGCTA 60.951 55.000 7.64 0.00 0.00 4.26
3402 3998 0.950555 TGCTGTGAACAAGGCGCTAG 60.951 55.000 7.64 0.00 0.00 3.42
3403 3999 0.670546 GCTGTGAACAAGGCGCTAGA 60.671 55.000 7.64 0.00 0.00 2.43
3404 4000 1.071605 CTGTGAACAAGGCGCTAGAC 58.928 55.000 7.64 0.00 0.00 2.59
3422 4018 7.623268 GCTAGACGAACATTTTGAAATTGTT 57.377 32.000 15.51 15.51 0.00 2.83
3423 4019 7.493313 GCTAGACGAACATTTTGAAATTGTTG 58.507 34.615 19.17 14.21 0.00 3.33
3424 4020 6.826893 AGACGAACATTTTGAAATTGTTGG 57.173 33.333 19.17 19.14 0.00 3.77
3425 4021 5.752955 AGACGAACATTTTGAAATTGTTGGG 59.247 36.000 22.32 16.01 0.00 4.12
3426 4022 5.665459 ACGAACATTTTGAAATTGTTGGGA 58.335 33.333 22.32 0.00 0.00 4.37
3427 4023 5.522097 ACGAACATTTTGAAATTGTTGGGAC 59.478 36.000 22.32 10.30 0.00 4.46
3428 4024 5.050431 CGAACATTTTGAAATTGTTGGGACC 60.050 40.000 19.17 6.95 0.00 4.46
3429 4025 5.628797 ACATTTTGAAATTGTTGGGACCT 57.371 34.783 0.03 0.00 0.00 3.85
3430 4026 6.000246 ACATTTTGAAATTGTTGGGACCTT 58.000 33.333 0.03 0.00 0.00 3.50
3431 4027 5.821995 ACATTTTGAAATTGTTGGGACCTTG 59.178 36.000 0.03 0.00 0.00 3.61
3432 4028 3.467374 TTGAAATTGTTGGGACCTTGC 57.533 42.857 0.00 0.00 0.00 4.01
3433 4029 2.392662 TGAAATTGTTGGGACCTTGCA 58.607 42.857 0.00 0.00 0.00 4.08
3434 4030 2.364970 TGAAATTGTTGGGACCTTGCAG 59.635 45.455 0.00 0.00 0.00 4.41
3435 4031 0.681175 AATTGTTGGGACCTTGCAGC 59.319 50.000 0.00 0.00 0.00 5.25
3436 4032 0.178953 ATTGTTGGGACCTTGCAGCT 60.179 50.000 0.00 0.00 0.00 4.24
3437 4033 0.396974 TTGTTGGGACCTTGCAGCTT 60.397 50.000 0.00 0.00 0.00 3.74
3438 4034 0.823356 TGTTGGGACCTTGCAGCTTC 60.823 55.000 0.00 0.00 0.00 3.86
3439 4035 1.228552 TTGGGACCTTGCAGCTTCC 60.229 57.895 0.00 1.76 0.00 3.46
3440 4036 2.005606 TTGGGACCTTGCAGCTTCCA 62.006 55.000 10.68 3.52 0.00 3.53
3441 4037 1.228552 GGGACCTTGCAGCTTCCAA 60.229 57.895 10.68 0.00 0.00 3.53
3442 4038 0.827507 GGGACCTTGCAGCTTCCAAA 60.828 55.000 10.68 0.00 0.00 3.28
3443 4039 1.260544 GGACCTTGCAGCTTCCAAAT 58.739 50.000 0.00 0.00 0.00 2.32
3444 4040 1.620323 GGACCTTGCAGCTTCCAAATT 59.380 47.619 0.00 0.00 0.00 1.82
3445 4041 2.037641 GGACCTTGCAGCTTCCAAATTT 59.962 45.455 0.00 0.00 0.00 1.82
3446 4042 3.494924 GGACCTTGCAGCTTCCAAATTTT 60.495 43.478 0.00 0.00 0.00 1.82
3447 4043 3.732212 ACCTTGCAGCTTCCAAATTTTC 58.268 40.909 0.00 0.00 0.00 2.29
3448 4044 3.389002 ACCTTGCAGCTTCCAAATTTTCT 59.611 39.130 0.00 0.00 0.00 2.52
3449 4045 4.141642 ACCTTGCAGCTTCCAAATTTTCTT 60.142 37.500 0.00 0.00 0.00 2.52
3450 4046 4.450080 CCTTGCAGCTTCCAAATTTTCTTC 59.550 41.667 0.00 0.00 0.00 2.87
3451 4047 3.993920 TGCAGCTTCCAAATTTTCTTCC 58.006 40.909 0.00 0.00 0.00 3.46
3452 4048 3.387374 TGCAGCTTCCAAATTTTCTTCCA 59.613 39.130 0.00 0.00 0.00 3.53
3453 4049 4.141756 TGCAGCTTCCAAATTTTCTTCCAA 60.142 37.500 0.00 0.00 0.00 3.53
3454 4050 4.999311 GCAGCTTCCAAATTTTCTTCCAAT 59.001 37.500 0.00 0.00 0.00 3.16
3455 4051 5.471116 GCAGCTTCCAAATTTTCTTCCAATT 59.529 36.000 0.00 0.00 0.00 2.32
3456 4052 6.650390 GCAGCTTCCAAATTTTCTTCCAATTA 59.350 34.615 0.00 0.00 0.00 1.40
3457 4053 7.173047 GCAGCTTCCAAATTTTCTTCCAATTAA 59.827 33.333 0.00 0.00 0.00 1.40
3458 4054 9.054922 CAGCTTCCAAATTTTCTTCCAATTAAA 57.945 29.630 0.00 0.00 0.00 1.52
3459 4055 9.625747 AGCTTCCAAATTTTCTTCCAATTAAAA 57.374 25.926 0.00 0.00 0.00 1.52
3460 4056 9.663904 GCTTCCAAATTTTCTTCCAATTAAAAC 57.336 29.630 0.00 0.00 0.00 2.43
3461 4057 9.862585 CTTCCAAATTTTCTTCCAATTAAAACG 57.137 29.630 0.00 0.00 0.00 3.60
3462 4058 8.950208 TCCAAATTTTCTTCCAATTAAAACGT 57.050 26.923 0.00 0.00 0.00 3.99
3463 4059 9.384764 TCCAAATTTTCTTCCAATTAAAACGTT 57.615 25.926 0.00 0.00 0.00 3.99
3464 4060 9.995957 CCAAATTTTCTTCCAATTAAAACGTTT 57.004 25.926 7.96 7.96 0.00 3.60
3470 4066 9.535878 TTTCTTCCAATTAAAACGTTTAATGCT 57.464 25.926 15.03 0.17 0.00 3.79
3471 4067 9.535878 TTCTTCCAATTAAAACGTTTAATGCTT 57.464 25.926 15.03 0.00 0.00 3.91
3472 4068 9.187455 TCTTCCAATTAAAACGTTTAATGCTTC 57.813 29.630 15.03 0.00 0.00 3.86
3473 4069 9.191995 CTTCCAATTAAAACGTTTAATGCTTCT 57.808 29.630 15.03 0.00 0.00 2.85
3474 4070 8.736751 TCCAATTAAAACGTTTAATGCTTCTC 57.263 30.769 15.03 0.00 0.00 2.87
3475 4071 7.810759 TCCAATTAAAACGTTTAATGCTTCTCC 59.189 33.333 15.03 0.00 0.00 3.71
3476 4072 7.062956 CCAATTAAAACGTTTAATGCTTCTCCC 59.937 37.037 15.03 0.00 0.00 4.30
3477 4073 6.887626 TTAAAACGTTTAATGCTTCTCCCT 57.112 33.333 15.03 0.00 0.00 4.20
3478 4074 5.784578 AAAACGTTTAATGCTTCTCCCTT 57.215 34.783 15.03 0.00 0.00 3.95
3479 4075 5.784578 AAACGTTTAATGCTTCTCCCTTT 57.215 34.783 12.83 0.00 0.00 3.11
3480 4076 5.372547 AACGTTTAATGCTTCTCCCTTTC 57.627 39.130 0.00 0.00 0.00 2.62
3481 4077 4.394729 ACGTTTAATGCTTCTCCCTTTCA 58.605 39.130 0.00 0.00 0.00 2.69
3482 4078 5.010282 ACGTTTAATGCTTCTCCCTTTCAT 58.990 37.500 0.00 0.00 0.00 2.57
3483 4079 5.476945 ACGTTTAATGCTTCTCCCTTTCATT 59.523 36.000 0.00 0.00 0.00 2.57
3484 4080 6.015434 ACGTTTAATGCTTCTCCCTTTCATTT 60.015 34.615 0.00 0.00 0.00 2.32
3485 4081 6.528072 CGTTTAATGCTTCTCCCTTTCATTTC 59.472 38.462 0.00 0.00 0.00 2.17
3486 4082 7.378181 GTTTAATGCTTCTCCCTTTCATTTCA 58.622 34.615 0.00 0.00 0.00 2.69
3487 4083 5.656213 AATGCTTCTCCCTTTCATTTCAG 57.344 39.130 0.00 0.00 0.00 3.02
3488 4084 4.104383 TGCTTCTCCCTTTCATTTCAGT 57.896 40.909 0.00 0.00 0.00 3.41
3489 4085 3.822735 TGCTTCTCCCTTTCATTTCAGTG 59.177 43.478 0.00 0.00 0.00 3.66
3490 4086 3.192212 GCTTCTCCCTTTCATTTCAGTGG 59.808 47.826 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.519455 GTGAGGCGCACGCTATCTT 60.519 57.895 15.36 0.00 41.60 2.40
77 78 1.344114 GAGGCCAAAGCAAATCCAACA 59.656 47.619 5.01 0.00 42.56 3.33
127 128 4.545706 TGGGATAAGCAGGCGCCG 62.546 66.667 23.20 17.35 39.83 6.46
210 222 1.295020 TCATCCCAAGGAATTCCGGT 58.705 50.000 18.82 8.34 42.08 5.28
211 223 2.024414 GTTCATCCCAAGGAATTCCGG 58.976 52.381 18.82 14.38 42.08 5.14
239 251 5.193679 GGTAGGAGTATGTGGCAAGAAAAT 58.806 41.667 0.00 0.00 0.00 1.82
243 255 2.116238 GGGTAGGAGTATGTGGCAAGA 58.884 52.381 0.00 0.00 0.00 3.02
245 257 2.116238 GAGGGTAGGAGTATGTGGCAA 58.884 52.381 0.00 0.00 0.00 4.52
246 258 1.007842 TGAGGGTAGGAGTATGTGGCA 59.992 52.381 0.00 0.00 0.00 4.92
379 474 0.329931 ATAACCCGGATGTGGTGCAA 59.670 50.000 0.73 0.00 35.88 4.08
405 500 6.093495 CCGGTCAGCACATTCTTAATTTCTTA 59.907 38.462 0.00 0.00 0.00 2.10
408 503 4.394920 TCCGGTCAGCACATTCTTAATTTC 59.605 41.667 0.00 0.00 0.00 2.17
409 504 4.331968 TCCGGTCAGCACATTCTTAATTT 58.668 39.130 0.00 0.00 0.00 1.82
410 507 3.950397 TCCGGTCAGCACATTCTTAATT 58.050 40.909 0.00 0.00 0.00 1.40
411 508 3.627395 TCCGGTCAGCACATTCTTAAT 57.373 42.857 0.00 0.00 0.00 1.40
412 509 3.627395 ATCCGGTCAGCACATTCTTAA 57.373 42.857 0.00 0.00 0.00 1.85
420 517 3.126831 CAGATAGAAATCCGGTCAGCAC 58.873 50.000 0.00 0.00 31.98 4.40
521 622 1.068748 CAGTCCAGACATGCTGTTTGC 60.069 52.381 13.67 0.00 43.33 3.68
621 738 0.872388 CGGTGTACAAGCCAGGAAAC 59.128 55.000 0.00 0.00 0.00 2.78
626 743 1.163420 TGCAACGGTGTACAAGCCAG 61.163 55.000 0.66 0.00 0.00 4.85
639 765 5.536554 ACAAATCTTCATCTACTGCAACG 57.463 39.130 0.00 0.00 0.00 4.10
666 792 2.734755 TTCATGGAATAGGGTGCTGG 57.265 50.000 0.00 0.00 0.00 4.85
673 799 7.325694 ACTTTGAGCATTTTTCATGGAATAGG 58.674 34.615 0.00 0.00 0.00 2.57
728 910 4.989168 GGACAAAACGACTGTCAGTTATCT 59.011 41.667 7.00 2.16 44.16 1.98
794 988 3.579586 AGCTCAAAAGGCAATTCAATGGA 59.420 39.130 0.00 0.00 0.00 3.41
2236 2825 7.187480 CAGTCGAAGAAATGATCGTAGAACTA 58.813 38.462 0.00 0.00 38.62 2.24
2265 2854 1.867865 CGATCGATCTCGTCCTTCAGA 59.132 52.381 22.43 0.00 40.80 3.27
2398 2987 2.146342 CACATCATATCTTGGCCCGAC 58.854 52.381 0.00 0.00 0.00 4.79
2981 3577 1.080569 GGCGGTTCTGCACAAATGG 60.081 57.895 5.97 0.00 36.28 3.16
3071 3667 3.862642 GCGGGCTTCTAGTCCTCATAATG 60.863 52.174 0.00 0.00 38.01 1.90
3109 3705 0.692476 TGGTGGGATGTCAGGAACAG 59.308 55.000 0.00 0.00 42.37 3.16
3114 3710 1.002134 GGTGTGGTGGGATGTCAGG 60.002 63.158 0.00 0.00 0.00 3.86
3140 3736 4.310288 GCTGAGGGCTCTTTGTCC 57.690 61.111 0.00 0.00 41.82 4.02
3151 3747 1.630126 ATAGTGCCACCCAGCTGAGG 61.630 60.000 17.39 17.11 0.00 3.86
3152 3748 0.179062 GATAGTGCCACCCAGCTGAG 60.179 60.000 17.39 3.79 0.00 3.35
3153 3749 0.909133 TGATAGTGCCACCCAGCTGA 60.909 55.000 17.39 0.00 0.00 4.26
3154 3750 0.035152 TTGATAGTGCCACCCAGCTG 60.035 55.000 6.78 6.78 0.00 4.24
3155 3751 0.035056 GTTGATAGTGCCACCCAGCT 60.035 55.000 0.00 0.00 0.00 4.24
3156 3752 1.032114 GGTTGATAGTGCCACCCAGC 61.032 60.000 0.00 0.00 0.00 4.85
3157 3753 0.620556 AGGTTGATAGTGCCACCCAG 59.379 55.000 0.00 0.00 0.00 4.45
3158 3754 1.004277 GAAGGTTGATAGTGCCACCCA 59.996 52.381 0.00 0.00 0.00 4.51
3159 3755 1.682087 GGAAGGTTGATAGTGCCACCC 60.682 57.143 0.00 0.00 0.00 4.61
3160 3756 1.004277 TGGAAGGTTGATAGTGCCACC 59.996 52.381 0.00 0.00 0.00 4.61
3161 3757 2.084546 GTGGAAGGTTGATAGTGCCAC 58.915 52.381 0.00 0.00 37.72 5.01
3162 3758 1.702401 TGTGGAAGGTTGATAGTGCCA 59.298 47.619 0.00 0.00 0.00 4.92
3163 3759 2.489938 TGTGGAAGGTTGATAGTGCC 57.510 50.000 0.00 0.00 0.00 5.01
3164 3760 4.458989 TGAATTGTGGAAGGTTGATAGTGC 59.541 41.667 0.00 0.00 0.00 4.40
3165 3761 5.707298 ACTGAATTGTGGAAGGTTGATAGTG 59.293 40.000 0.00 0.00 0.00 2.74
3166 3762 5.880901 ACTGAATTGTGGAAGGTTGATAGT 58.119 37.500 0.00 0.00 0.00 2.12
3167 3763 7.414540 GCTTACTGAATTGTGGAAGGTTGATAG 60.415 40.741 0.00 0.00 0.00 2.08
3168 3764 6.374333 GCTTACTGAATTGTGGAAGGTTGATA 59.626 38.462 0.00 0.00 0.00 2.15
3169 3765 5.183904 GCTTACTGAATTGTGGAAGGTTGAT 59.816 40.000 0.00 0.00 0.00 2.57
3170 3766 4.518970 GCTTACTGAATTGTGGAAGGTTGA 59.481 41.667 0.00 0.00 0.00 3.18
3171 3767 4.278170 TGCTTACTGAATTGTGGAAGGTTG 59.722 41.667 0.00 0.00 0.00 3.77
3172 3768 4.469657 TGCTTACTGAATTGTGGAAGGTT 58.530 39.130 0.00 0.00 0.00 3.50
3173 3769 4.098914 TGCTTACTGAATTGTGGAAGGT 57.901 40.909 0.00 0.00 0.00 3.50
3174 3770 4.096984 GGATGCTTACTGAATTGTGGAAGG 59.903 45.833 0.00 0.00 0.00 3.46
3175 3771 4.096984 GGGATGCTTACTGAATTGTGGAAG 59.903 45.833 0.00 0.00 0.00 3.46
3176 3772 4.016444 GGGATGCTTACTGAATTGTGGAA 58.984 43.478 0.00 0.00 0.00 3.53
3177 3773 3.010027 TGGGATGCTTACTGAATTGTGGA 59.990 43.478 0.00 0.00 0.00 4.02
3178 3774 3.355378 TGGGATGCTTACTGAATTGTGG 58.645 45.455 0.00 0.00 0.00 4.17
3179 3775 4.400251 ACATGGGATGCTTACTGAATTGTG 59.600 41.667 0.00 0.00 0.00 3.33
3180 3776 4.400251 CACATGGGATGCTTACTGAATTGT 59.600 41.667 0.00 0.00 0.00 2.71
3181 3777 4.735578 GCACATGGGATGCTTACTGAATTG 60.736 45.833 0.00 0.00 40.08 2.32
3182 3778 3.382546 GCACATGGGATGCTTACTGAATT 59.617 43.478 0.00 0.00 40.08 2.17
3183 3779 2.954318 GCACATGGGATGCTTACTGAAT 59.046 45.455 0.00 0.00 40.08 2.57
3184 3780 2.290832 TGCACATGGGATGCTTACTGAA 60.291 45.455 0.00 0.00 43.77 3.02
3185 3781 1.281577 TGCACATGGGATGCTTACTGA 59.718 47.619 0.00 0.00 43.77 3.41
3186 3782 1.674441 CTGCACATGGGATGCTTACTG 59.326 52.381 0.00 0.00 43.77 2.74
3187 3783 1.561076 TCTGCACATGGGATGCTTACT 59.439 47.619 0.00 0.00 43.77 2.24
3188 3784 2.042686 TCTGCACATGGGATGCTTAC 57.957 50.000 0.00 0.00 43.77 2.34
3189 3785 2.804986 TTCTGCACATGGGATGCTTA 57.195 45.000 0.00 0.00 43.77 3.09
3190 3786 2.154567 ATTCTGCACATGGGATGCTT 57.845 45.000 0.00 0.00 43.77 3.91
3191 3787 1.754803 CAATTCTGCACATGGGATGCT 59.245 47.619 0.00 0.00 43.77 3.79
3192 3788 1.479323 ACAATTCTGCACATGGGATGC 59.521 47.619 0.00 0.00 43.68 3.91
3193 3789 2.737359 GCACAATTCTGCACATGGGATG 60.737 50.000 0.00 0.00 37.11 3.51
3194 3790 1.479323 GCACAATTCTGCACATGGGAT 59.521 47.619 0.00 0.00 37.11 3.85
3195 3791 0.889994 GCACAATTCTGCACATGGGA 59.110 50.000 0.00 0.00 37.11 4.37
3196 3792 0.892755 AGCACAATTCTGCACATGGG 59.107 50.000 8.47 0.00 39.86 4.00
3197 3793 1.990799 CAGCACAATTCTGCACATGG 58.009 50.000 8.47 0.00 39.86 3.66
3224 3820 0.179012 TTGGGTGGTCTTCGGGAAAC 60.179 55.000 0.00 0.00 0.00 2.78
3225 3821 0.179012 GTTGGGTGGTCTTCGGGAAA 60.179 55.000 0.00 0.00 0.00 3.13
3226 3822 1.057851 AGTTGGGTGGTCTTCGGGAA 61.058 55.000 0.00 0.00 0.00 3.97
3227 3823 1.057851 AAGTTGGGTGGTCTTCGGGA 61.058 55.000 0.00 0.00 0.00 5.14
3228 3824 0.179001 AAAGTTGGGTGGTCTTCGGG 60.179 55.000 0.00 0.00 0.00 5.14
3229 3825 2.423577 CTAAAGTTGGGTGGTCTTCGG 58.576 52.381 0.00 0.00 0.00 4.30
3230 3826 1.804748 GCTAAAGTTGGGTGGTCTTCG 59.195 52.381 0.00 0.00 0.00 3.79
3231 3827 2.160205 GGCTAAAGTTGGGTGGTCTTC 58.840 52.381 0.00 0.00 0.00 2.87
3232 3828 1.780919 AGGCTAAAGTTGGGTGGTCTT 59.219 47.619 0.00 0.00 0.00 3.01
3233 3829 1.073923 CAGGCTAAAGTTGGGTGGTCT 59.926 52.381 0.00 0.00 0.00 3.85
3234 3830 1.534729 CAGGCTAAAGTTGGGTGGTC 58.465 55.000 0.00 0.00 0.00 4.02
3235 3831 0.539669 GCAGGCTAAAGTTGGGTGGT 60.540 55.000 0.00 0.00 0.00 4.16
3236 3832 0.251341 AGCAGGCTAAAGTTGGGTGG 60.251 55.000 0.00 0.00 0.00 4.61
3237 3833 1.168714 GAGCAGGCTAAAGTTGGGTG 58.831 55.000 0.00 0.00 0.00 4.61
3238 3834 0.038310 GGAGCAGGCTAAAGTTGGGT 59.962 55.000 0.00 0.00 0.00 4.51
3239 3835 0.038166 TGGAGCAGGCTAAAGTTGGG 59.962 55.000 0.00 0.00 0.00 4.12
3240 3836 1.541588 GTTGGAGCAGGCTAAAGTTGG 59.458 52.381 0.00 0.00 0.00 3.77
3241 3837 2.030805 GTGTTGGAGCAGGCTAAAGTTG 60.031 50.000 0.00 0.00 0.00 3.16
3242 3838 2.158608 AGTGTTGGAGCAGGCTAAAGTT 60.159 45.455 0.00 0.00 0.00 2.66
3243 3839 1.421646 AGTGTTGGAGCAGGCTAAAGT 59.578 47.619 0.00 0.00 0.00 2.66
3244 3840 2.079925 GAGTGTTGGAGCAGGCTAAAG 58.920 52.381 0.00 0.00 0.00 1.85
3245 3841 1.699634 AGAGTGTTGGAGCAGGCTAAA 59.300 47.619 0.00 0.00 0.00 1.85
3246 3842 1.352083 AGAGTGTTGGAGCAGGCTAA 58.648 50.000 0.00 0.00 0.00 3.09
3247 3843 1.352083 AAGAGTGTTGGAGCAGGCTA 58.648 50.000 0.00 0.00 0.00 3.93
3248 3844 0.475906 AAAGAGTGTTGGAGCAGGCT 59.524 50.000 0.00 0.00 0.00 4.58
3249 3845 0.877743 GAAAGAGTGTTGGAGCAGGC 59.122 55.000 0.00 0.00 0.00 4.85
3250 3846 1.876156 GTGAAAGAGTGTTGGAGCAGG 59.124 52.381 0.00 0.00 0.00 4.85
3251 3847 1.876156 GGTGAAAGAGTGTTGGAGCAG 59.124 52.381 0.00 0.00 0.00 4.24
3252 3848 1.211703 TGGTGAAAGAGTGTTGGAGCA 59.788 47.619 0.00 0.00 0.00 4.26
3253 3849 1.967319 TGGTGAAAGAGTGTTGGAGC 58.033 50.000 0.00 0.00 0.00 4.70
3254 3850 4.013267 AGATGGTGAAAGAGTGTTGGAG 57.987 45.455 0.00 0.00 0.00 3.86
3255 3851 4.437682 AAGATGGTGAAAGAGTGTTGGA 57.562 40.909 0.00 0.00 0.00 3.53
3256 3852 5.063204 TGTAAGATGGTGAAAGAGTGTTGG 58.937 41.667 0.00 0.00 0.00 3.77
3257 3853 6.808008 ATGTAAGATGGTGAAAGAGTGTTG 57.192 37.500 0.00 0.00 0.00 3.33
3258 3854 7.502226 TGAAATGTAAGATGGTGAAAGAGTGTT 59.498 33.333 0.00 0.00 0.00 3.32
3259 3855 6.998074 TGAAATGTAAGATGGTGAAAGAGTGT 59.002 34.615 0.00 0.00 0.00 3.55
3260 3856 7.361542 CCTGAAATGTAAGATGGTGAAAGAGTG 60.362 40.741 0.00 0.00 0.00 3.51
3261 3857 6.656693 CCTGAAATGTAAGATGGTGAAAGAGT 59.343 38.462 0.00 0.00 0.00 3.24
3262 3858 6.881065 TCCTGAAATGTAAGATGGTGAAAGAG 59.119 38.462 0.00 0.00 0.00 2.85
3263 3859 6.778821 TCCTGAAATGTAAGATGGTGAAAGA 58.221 36.000 0.00 0.00 0.00 2.52
3264 3860 7.391554 TCTTCCTGAAATGTAAGATGGTGAAAG 59.608 37.037 0.00 0.00 0.00 2.62
3265 3861 7.230747 TCTTCCTGAAATGTAAGATGGTGAAA 58.769 34.615 0.00 0.00 0.00 2.69
3266 3862 6.778821 TCTTCCTGAAATGTAAGATGGTGAA 58.221 36.000 0.00 0.00 0.00 3.18
3267 3863 6.373005 TCTTCCTGAAATGTAAGATGGTGA 57.627 37.500 0.00 0.00 0.00 4.02
3268 3864 7.024340 CATCTTCCTGAAATGTAAGATGGTG 57.976 40.000 13.54 0.00 45.94 4.17
3272 3868 5.591877 GCCACATCTTCCTGAAATGTAAGAT 59.408 40.000 0.00 0.00 38.82 2.40
3273 3869 4.943705 GCCACATCTTCCTGAAATGTAAGA 59.056 41.667 0.00 0.00 32.54 2.10
3274 3870 4.096984 GGCCACATCTTCCTGAAATGTAAG 59.903 45.833 0.00 0.00 32.54 2.34
3275 3871 4.016444 GGCCACATCTTCCTGAAATGTAA 58.984 43.478 0.00 0.00 32.54 2.41
3276 3872 3.620488 GGCCACATCTTCCTGAAATGTA 58.380 45.455 0.00 0.00 32.54 2.29
3277 3873 2.450476 GGCCACATCTTCCTGAAATGT 58.550 47.619 0.00 0.00 34.03 2.71
3278 3874 1.402968 CGGCCACATCTTCCTGAAATG 59.597 52.381 2.24 0.00 0.00 2.32
3279 3875 1.755179 CGGCCACATCTTCCTGAAAT 58.245 50.000 2.24 0.00 0.00 2.17
3280 3876 0.960364 GCGGCCACATCTTCCTGAAA 60.960 55.000 2.24 0.00 0.00 2.69
3281 3877 1.377202 GCGGCCACATCTTCCTGAA 60.377 57.895 2.24 0.00 0.00 3.02
3282 3878 2.268920 GCGGCCACATCTTCCTGA 59.731 61.111 2.24 0.00 0.00 3.86
3283 3879 2.825836 GGCGGCCACATCTTCCTG 60.826 66.667 15.62 0.00 0.00 3.86
3284 3880 4.473520 CGGCGGCCACATCTTCCT 62.474 66.667 20.71 0.00 0.00 3.36
3285 3881 4.778143 ACGGCGGCCACATCTTCC 62.778 66.667 20.71 0.00 0.00 3.46
3286 3882 3.195698 GACGGCGGCCACATCTTC 61.196 66.667 20.71 1.08 0.00 2.87
3287 3883 4.778143 GGACGGCGGCCACATCTT 62.778 66.667 30.45 0.00 0.00 2.40
3292 3888 2.862674 TAAATGAGGACGGCGGCCAC 62.863 60.000 36.46 29.69 0.00 5.01
3293 3889 2.186602 TTAAATGAGGACGGCGGCCA 62.187 55.000 36.46 15.90 0.00 5.36
3294 3890 1.450669 TTAAATGAGGACGGCGGCC 60.451 57.895 28.04 28.04 0.00 6.13
3295 3891 1.712018 GGTTAAATGAGGACGGCGGC 61.712 60.000 13.24 8.60 0.00 6.53
3296 3892 1.426041 CGGTTAAATGAGGACGGCGG 61.426 60.000 13.24 0.00 0.00 6.13
3297 3893 0.458889 TCGGTTAAATGAGGACGGCG 60.459 55.000 4.80 4.80 0.00 6.46
3298 3894 1.287425 CTCGGTTAAATGAGGACGGC 58.713 55.000 0.00 0.00 0.00 5.68
3299 3895 2.268298 CACTCGGTTAAATGAGGACGG 58.732 52.381 9.35 0.00 36.53 4.79
3300 3896 1.659098 GCACTCGGTTAAATGAGGACG 59.341 52.381 9.35 0.00 36.53 4.79
3301 3897 2.415512 GTGCACTCGGTTAAATGAGGAC 59.584 50.000 10.32 2.86 36.53 3.85
3302 3898 2.037902 TGTGCACTCGGTTAAATGAGGA 59.962 45.455 19.41 0.00 36.53 3.71
3303 3899 2.159627 GTGTGCACTCGGTTAAATGAGG 59.840 50.000 19.41 1.64 36.53 3.86
3304 3900 3.067106 AGTGTGCACTCGGTTAAATGAG 58.933 45.455 19.41 4.17 36.92 2.90
3305 3901 2.805671 CAGTGTGCACTCGGTTAAATGA 59.194 45.455 19.41 0.00 40.20 2.57
3306 3902 2.095768 CCAGTGTGCACTCGGTTAAATG 60.096 50.000 19.41 4.97 40.20 2.32
3307 3903 2.151202 CCAGTGTGCACTCGGTTAAAT 58.849 47.619 19.41 0.00 40.20 1.40
3308 3904 1.588674 CCAGTGTGCACTCGGTTAAA 58.411 50.000 19.41 0.00 40.20 1.52
3309 3905 0.250124 CCCAGTGTGCACTCGGTTAA 60.250 55.000 19.41 0.00 40.20 2.01
3310 3906 1.369692 CCCAGTGTGCACTCGGTTA 59.630 57.895 19.41 0.00 40.20 2.85
3311 3907 2.111043 CCCAGTGTGCACTCGGTT 59.889 61.111 19.41 0.00 40.20 4.44
3312 3908 4.626081 GCCCAGTGTGCACTCGGT 62.626 66.667 19.41 0.00 41.09 4.69
3313 3909 4.624364 TGCCCAGTGTGCACTCGG 62.624 66.667 19.41 18.10 41.80 4.63
3314 3910 3.046087 CTGCCCAGTGTGCACTCG 61.046 66.667 19.41 10.57 40.20 4.18
3315 3911 2.670934 CCTGCCCAGTGTGCACTC 60.671 66.667 19.41 15.05 40.20 3.51
3316 3912 3.482232 GACCTGCCCAGTGTGCACT 62.482 63.158 19.41 0.00 43.61 4.40
3317 3913 2.980233 GACCTGCCCAGTGTGCAC 60.980 66.667 10.75 10.75 34.46 4.57
3318 3914 2.832778 ATGACCTGCCCAGTGTGCA 61.833 57.895 0.00 0.00 37.17 4.57
3319 3915 2.034687 ATGACCTGCCCAGTGTGC 59.965 61.111 0.00 0.00 0.00 4.57
3320 3916 0.957395 GACATGACCTGCCCAGTGTG 60.957 60.000 0.00 0.00 0.00 3.82
3321 3917 1.376466 GACATGACCTGCCCAGTGT 59.624 57.895 0.00 0.00 0.00 3.55
3322 3918 1.377725 GGACATGACCTGCCCAGTG 60.378 63.158 6.99 0.00 0.00 3.66
3323 3919 1.426251 TTGGACATGACCTGCCCAGT 61.426 55.000 15.29 0.00 38.77 4.00
3324 3920 0.033796 ATTGGACATGACCTGCCCAG 60.034 55.000 15.29 0.00 38.77 4.45
3325 3921 0.409092 AATTGGACATGACCTGCCCA 59.591 50.000 15.29 2.35 35.29 5.36
3326 3922 1.106285 GAATTGGACATGACCTGCCC 58.894 55.000 15.29 0.00 0.00 5.36
3327 3923 1.106285 GGAATTGGACATGACCTGCC 58.894 55.000 15.29 7.44 0.00 4.85
3328 3924 1.474077 GTGGAATTGGACATGACCTGC 59.526 52.381 15.29 1.45 0.00 4.85
3329 3925 1.739466 CGTGGAATTGGACATGACCTG 59.261 52.381 15.29 0.00 0.00 4.00
3330 3926 1.950484 GCGTGGAATTGGACATGACCT 60.950 52.381 15.29 0.00 0.00 3.85
3331 3927 0.451783 GCGTGGAATTGGACATGACC 59.548 55.000 7.32 7.32 0.00 4.02
3332 3928 0.451783 GGCGTGGAATTGGACATGAC 59.548 55.000 0.00 0.00 0.00 3.06
3333 3929 0.037447 TGGCGTGGAATTGGACATGA 59.963 50.000 0.00 0.00 0.00 3.07
3334 3930 0.887247 TTGGCGTGGAATTGGACATG 59.113 50.000 0.00 0.00 0.00 3.21
3335 3931 0.887933 GTTGGCGTGGAATTGGACAT 59.112 50.000 0.00 0.00 0.00 3.06
3336 3932 1.175983 GGTTGGCGTGGAATTGGACA 61.176 55.000 0.00 0.00 0.00 4.02
3337 3933 0.893727 AGGTTGGCGTGGAATTGGAC 60.894 55.000 0.00 0.00 0.00 4.02
3338 3934 0.178975 AAGGTTGGCGTGGAATTGGA 60.179 50.000 0.00 0.00 0.00 3.53
3339 3935 0.678950 AAAGGTTGGCGTGGAATTGG 59.321 50.000 0.00 0.00 0.00 3.16
3340 3936 1.339610 TCAAAGGTTGGCGTGGAATTG 59.660 47.619 0.00 0.00 0.00 2.32
3341 3937 1.698506 TCAAAGGTTGGCGTGGAATT 58.301 45.000 0.00 0.00 0.00 2.17
3342 3938 1.698506 TTCAAAGGTTGGCGTGGAAT 58.301 45.000 0.00 0.00 0.00 3.01
3343 3939 1.611491 GATTCAAAGGTTGGCGTGGAA 59.389 47.619 0.00 0.00 0.00 3.53
3344 3940 1.202879 AGATTCAAAGGTTGGCGTGGA 60.203 47.619 0.00 0.00 0.00 4.02
3345 3941 1.247567 AGATTCAAAGGTTGGCGTGG 58.752 50.000 0.00 0.00 0.00 4.94
3346 3942 2.293122 TGAAGATTCAAAGGTTGGCGTG 59.707 45.455 0.00 0.00 33.55 5.34
3347 3943 2.582052 TGAAGATTCAAAGGTTGGCGT 58.418 42.857 0.00 0.00 33.55 5.68
3348 3944 3.855689 ATGAAGATTCAAAGGTTGGCG 57.144 42.857 0.00 0.00 41.13 5.69
3349 3945 5.166398 CAGAATGAAGATTCAAAGGTTGGC 58.834 41.667 0.00 0.00 40.59 4.52
3350 3946 6.336842 ACAGAATGAAGATTCAAAGGTTGG 57.663 37.500 0.00 0.00 40.59 3.77
3351 3947 7.306983 GCAAACAGAATGAAGATTCAAAGGTTG 60.307 37.037 0.00 6.40 40.59 3.77
3352 3948 6.703165 GCAAACAGAATGAAGATTCAAAGGTT 59.297 34.615 0.00 0.51 40.59 3.50
3353 3949 6.218746 GCAAACAGAATGAAGATTCAAAGGT 58.781 36.000 0.00 0.00 40.59 3.50
3354 3950 5.636543 GGCAAACAGAATGAAGATTCAAAGG 59.363 40.000 0.00 0.00 40.59 3.11
3355 3951 6.218019 TGGCAAACAGAATGAAGATTCAAAG 58.782 36.000 0.00 0.00 40.59 2.77
3356 3952 6.159299 TGGCAAACAGAATGAAGATTCAAA 57.841 33.333 0.00 0.00 40.59 2.69
3357 3953 5.787953 TGGCAAACAGAATGAAGATTCAA 57.212 34.783 0.00 0.00 40.59 2.69
3358 3954 5.787953 TTGGCAAACAGAATGAAGATTCA 57.212 34.783 0.00 0.00 40.59 2.57
3359 3955 6.530534 CAGATTGGCAAACAGAATGAAGATTC 59.469 38.462 3.01 0.00 39.69 2.52
3360 3956 6.395629 CAGATTGGCAAACAGAATGAAGATT 58.604 36.000 3.01 0.00 39.69 2.40
3361 3957 5.623824 GCAGATTGGCAAACAGAATGAAGAT 60.624 40.000 3.01 0.00 39.69 2.40
3362 3958 4.321452 GCAGATTGGCAAACAGAATGAAGA 60.321 41.667 3.01 0.00 39.69 2.87
3363 3959 3.924686 GCAGATTGGCAAACAGAATGAAG 59.075 43.478 3.01 0.00 39.69 3.02
3364 3960 3.575256 AGCAGATTGGCAAACAGAATGAA 59.425 39.130 3.01 0.00 36.20 2.57
3365 3961 3.057104 CAGCAGATTGGCAAACAGAATGA 60.057 43.478 3.01 0.00 36.20 2.57
3366 3962 3.250744 CAGCAGATTGGCAAACAGAATG 58.749 45.455 3.01 0.00 38.19 2.67
3367 3963 2.895404 ACAGCAGATTGGCAAACAGAAT 59.105 40.909 3.01 0.00 35.83 2.40
3368 3964 2.034939 CACAGCAGATTGGCAAACAGAA 59.965 45.455 3.01 0.00 35.83 3.02
3369 3965 1.610038 CACAGCAGATTGGCAAACAGA 59.390 47.619 3.01 0.00 35.83 3.41
3370 3966 1.610038 TCACAGCAGATTGGCAAACAG 59.390 47.619 3.01 0.00 35.83 3.16
3371 3967 1.689984 TCACAGCAGATTGGCAAACA 58.310 45.000 3.01 0.00 35.83 2.83
3372 3968 2.223782 TGTTCACAGCAGATTGGCAAAC 60.224 45.455 3.01 0.42 35.83 2.93
3373 3969 2.030371 TGTTCACAGCAGATTGGCAAA 58.970 42.857 3.01 0.00 35.83 3.68
3374 3970 1.689984 TGTTCACAGCAGATTGGCAA 58.310 45.000 0.68 0.68 35.83 4.52
3375 3971 1.610038 CTTGTTCACAGCAGATTGGCA 59.390 47.619 0.00 0.00 35.83 4.92
3376 3972 1.068055 CCTTGTTCACAGCAGATTGGC 60.068 52.381 0.00 0.00 0.00 4.52
3377 3973 1.068055 GCCTTGTTCACAGCAGATTGG 60.068 52.381 0.00 0.00 0.00 3.16
3378 3974 1.400629 CGCCTTGTTCACAGCAGATTG 60.401 52.381 0.00 0.00 0.00 2.67
3379 3975 0.877071 CGCCTTGTTCACAGCAGATT 59.123 50.000 0.00 0.00 0.00 2.40
3380 3976 1.580845 GCGCCTTGTTCACAGCAGAT 61.581 55.000 0.00 0.00 0.00 2.90
3381 3977 2.253758 GCGCCTTGTTCACAGCAGA 61.254 57.895 0.00 0.00 0.00 4.26
3382 3978 0.950555 TAGCGCCTTGTTCACAGCAG 60.951 55.000 2.29 0.00 0.00 4.24
3383 3979 0.950555 CTAGCGCCTTGTTCACAGCA 60.951 55.000 2.29 0.00 0.00 4.41
3384 3980 0.670546 TCTAGCGCCTTGTTCACAGC 60.671 55.000 2.29 0.00 0.00 4.40
3385 3981 1.071605 GTCTAGCGCCTTGTTCACAG 58.928 55.000 2.29 0.00 0.00 3.66
3386 3982 0.666274 CGTCTAGCGCCTTGTTCACA 60.666 55.000 2.29 0.00 0.00 3.58
3387 3983 0.388134 TCGTCTAGCGCCTTGTTCAC 60.388 55.000 2.29 0.00 41.07 3.18
3388 3984 0.315886 TTCGTCTAGCGCCTTGTTCA 59.684 50.000 2.29 0.00 41.07 3.18
3389 3985 0.714439 GTTCGTCTAGCGCCTTGTTC 59.286 55.000 2.29 0.00 41.07 3.18
3390 3986 0.032952 TGTTCGTCTAGCGCCTTGTT 59.967 50.000 2.29 0.00 41.07 2.83
3391 3987 0.246635 ATGTTCGTCTAGCGCCTTGT 59.753 50.000 2.29 0.00 41.07 3.16
3392 3988 1.359848 AATGTTCGTCTAGCGCCTTG 58.640 50.000 2.29 0.00 41.07 3.61
3393 3989 2.094762 AAATGTTCGTCTAGCGCCTT 57.905 45.000 2.29 0.00 41.07 4.35
3394 3990 1.732259 CAAAATGTTCGTCTAGCGCCT 59.268 47.619 2.29 0.00 41.07 5.52
3395 3991 1.730064 TCAAAATGTTCGTCTAGCGCC 59.270 47.619 2.29 0.00 41.07 6.53
3396 3992 3.449322 TTCAAAATGTTCGTCTAGCGC 57.551 42.857 0.00 0.00 41.07 5.92
3397 3993 5.851177 ACAATTTCAAAATGTTCGTCTAGCG 59.149 36.000 0.83 0.83 43.01 4.26
3398 3994 7.358352 CCAACAATTTCAAAATGTTCGTCTAGC 60.358 37.037 0.25 0.00 0.00 3.42
3399 3995 7.114811 CCCAACAATTTCAAAATGTTCGTCTAG 59.885 37.037 0.25 0.00 0.00 2.43
3400 3996 6.920758 CCCAACAATTTCAAAATGTTCGTCTA 59.079 34.615 0.25 0.00 0.00 2.59
3401 3997 5.752955 CCCAACAATTTCAAAATGTTCGTCT 59.247 36.000 0.25 0.00 0.00 4.18
3402 3998 5.751028 TCCCAACAATTTCAAAATGTTCGTC 59.249 36.000 0.25 0.00 0.00 4.20
3403 3999 5.522097 GTCCCAACAATTTCAAAATGTTCGT 59.478 36.000 0.25 0.00 0.00 3.85
3404 4000 5.050431 GGTCCCAACAATTTCAAAATGTTCG 60.050 40.000 0.25 0.00 0.00 3.95
3405 4001 6.054941 AGGTCCCAACAATTTCAAAATGTTC 58.945 36.000 0.25 0.00 0.00 3.18
3406 4002 6.000246 AGGTCCCAACAATTTCAAAATGTT 58.000 33.333 0.00 0.00 0.00 2.71
3407 4003 5.628797 AGGTCCCAACAATTTCAAAATGT 57.371 34.783 0.00 0.00 0.00 2.71
3408 4004 5.277925 GCAAGGTCCCAACAATTTCAAAATG 60.278 40.000 0.00 0.00 0.00 2.32
3409 4005 4.821260 GCAAGGTCCCAACAATTTCAAAAT 59.179 37.500 0.00 0.00 0.00 1.82
3410 4006 4.195416 GCAAGGTCCCAACAATTTCAAAA 58.805 39.130 0.00 0.00 0.00 2.44
3411 4007 3.198635 TGCAAGGTCCCAACAATTTCAAA 59.801 39.130 0.00 0.00 0.00 2.69
3412 4008 2.768527 TGCAAGGTCCCAACAATTTCAA 59.231 40.909 0.00 0.00 0.00 2.69
3413 4009 2.364970 CTGCAAGGTCCCAACAATTTCA 59.635 45.455 0.00 0.00 0.00 2.69
3414 4010 2.867647 GCTGCAAGGTCCCAACAATTTC 60.868 50.000 0.00 0.00 0.00 2.17
3415 4011 1.070601 GCTGCAAGGTCCCAACAATTT 59.929 47.619 0.00 0.00 0.00 1.82
3416 4012 0.681175 GCTGCAAGGTCCCAACAATT 59.319 50.000 0.00 0.00 0.00 2.32
3417 4013 0.178953 AGCTGCAAGGTCCCAACAAT 60.179 50.000 1.02 0.00 44.61 2.71
3418 4014 1.229927 AGCTGCAAGGTCCCAACAA 59.770 52.632 1.02 0.00 44.61 2.83
3419 4015 2.926250 AGCTGCAAGGTCCCAACA 59.074 55.556 1.02 0.00 44.61 3.33
3427 4023 3.999046 AGAAAATTTGGAAGCTGCAAGG 58.001 40.909 1.02 0.00 0.00 3.61
3428 4024 4.450080 GGAAGAAAATTTGGAAGCTGCAAG 59.550 41.667 1.02 0.00 0.00 4.01
3429 4025 4.141756 TGGAAGAAAATTTGGAAGCTGCAA 60.142 37.500 1.02 0.00 0.00 4.08
3430 4026 3.387374 TGGAAGAAAATTTGGAAGCTGCA 59.613 39.130 1.02 0.00 0.00 4.41
3431 4027 3.993920 TGGAAGAAAATTTGGAAGCTGC 58.006 40.909 0.00 0.00 0.00 5.25
3432 4028 8.606040 TTAATTGGAAGAAAATTTGGAAGCTG 57.394 30.769 0.00 0.00 0.00 4.24
3433 4029 9.625747 TTTTAATTGGAAGAAAATTTGGAAGCT 57.374 25.926 0.00 0.00 0.00 3.74
3434 4030 9.663904 GTTTTAATTGGAAGAAAATTTGGAAGC 57.336 29.630 0.00 0.00 0.00 3.86
3435 4031 9.862585 CGTTTTAATTGGAAGAAAATTTGGAAG 57.137 29.630 0.00 0.00 0.00 3.46
3436 4032 9.384764 ACGTTTTAATTGGAAGAAAATTTGGAA 57.615 25.926 0.00 0.00 0.00 3.53
3437 4033 8.950208 ACGTTTTAATTGGAAGAAAATTTGGA 57.050 26.923 0.00 0.00 0.00 3.53
3438 4034 9.995957 AAACGTTTTAATTGGAAGAAAATTTGG 57.004 25.926 7.96 0.00 0.00 3.28
3444 4040 9.535878 AGCATTAAACGTTTTAATTGGAAGAAA 57.464 25.926 20.19 2.86 0.00 2.52
3445 4041 9.535878 AAGCATTAAACGTTTTAATTGGAAGAA 57.464 25.926 20.19 3.40 0.00 2.52
3446 4042 9.187455 GAAGCATTAAACGTTTTAATTGGAAGA 57.813 29.630 20.19 0.00 0.00 2.87
3447 4043 9.191995 AGAAGCATTAAACGTTTTAATTGGAAG 57.808 29.630 20.19 6.13 0.00 3.46
3448 4044 9.187455 GAGAAGCATTAAACGTTTTAATTGGAA 57.813 29.630 20.19 5.71 0.00 3.53
3449 4045 7.810759 GGAGAAGCATTAAACGTTTTAATTGGA 59.189 33.333 20.19 0.00 0.00 3.53
3450 4046 7.062956 GGGAGAAGCATTAAACGTTTTAATTGG 59.937 37.037 20.19 4.84 0.00 3.16
3451 4047 7.812669 AGGGAGAAGCATTAAACGTTTTAATTG 59.187 33.333 20.19 12.29 0.00 2.32
3452 4048 7.892609 AGGGAGAAGCATTAAACGTTTTAATT 58.107 30.769 20.19 6.99 0.00 1.40
3453 4049 7.462571 AGGGAGAAGCATTAAACGTTTTAAT 57.537 32.000 20.19 13.11 0.00 1.40
3454 4050 6.887626 AGGGAGAAGCATTAAACGTTTTAA 57.112 33.333 20.19 11.45 0.00 1.52
3455 4051 6.887626 AAGGGAGAAGCATTAAACGTTTTA 57.112 33.333 20.19 10.92 0.00 1.52
3456 4052 5.784578 AAGGGAGAAGCATTAAACGTTTT 57.215 34.783 20.19 0.00 0.00 2.43
3457 4053 5.300792 TGAAAGGGAGAAGCATTAAACGTTT 59.699 36.000 18.90 18.90 0.00 3.60
3458 4054 4.825085 TGAAAGGGAGAAGCATTAAACGTT 59.175 37.500 0.00 0.00 0.00 3.99
3459 4055 4.394729 TGAAAGGGAGAAGCATTAAACGT 58.605 39.130 0.00 0.00 0.00 3.99
3460 4056 5.567138 ATGAAAGGGAGAAGCATTAAACG 57.433 39.130 0.00 0.00 0.00 3.60
3461 4057 7.378181 TGAAATGAAAGGGAGAAGCATTAAAC 58.622 34.615 0.00 0.00 0.00 2.01
3462 4058 7.233348 ACTGAAATGAAAGGGAGAAGCATTAAA 59.767 33.333 0.00 0.00 0.00 1.52
3463 4059 6.721208 ACTGAAATGAAAGGGAGAAGCATTAA 59.279 34.615 0.00 0.00 0.00 1.40
3464 4060 6.151648 CACTGAAATGAAAGGGAGAAGCATTA 59.848 38.462 0.00 0.00 0.00 1.90
3465 4061 5.047519 CACTGAAATGAAAGGGAGAAGCATT 60.048 40.000 0.00 0.00 0.00 3.56
3466 4062 4.461781 CACTGAAATGAAAGGGAGAAGCAT 59.538 41.667 0.00 0.00 0.00 3.79
3467 4063 3.822735 CACTGAAATGAAAGGGAGAAGCA 59.177 43.478 0.00 0.00 0.00 3.91
3468 4064 3.192212 CCACTGAAATGAAAGGGAGAAGC 59.808 47.826 0.00 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.